Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene072818 | 0.818013 | 2.45E-52 | -1.69E-46 |
| MS.gene050273 | MS.gene072818 | 0.801588 | 8.39E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene072818 | 0.812823 | 3.49E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene072818 | 0.803964 | 2.71E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene072818 | 0.804608 | 1.99E-49 | -1.69E-46 |
| MS.gene055228 | MS.gene072818 | 0.808122 | 3.62E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072818.t1 | MTR_2g078470 | 93.103 | 29 | 2 | 0 | 98 | 126 | 332 | 360 | 6.00e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 59 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAAGTCTATTCTTGTATT+TGG | 0.208243 | 5.3:+4360315 | MS.gene072818:CDS |
| TAAGGGATTCAGTCCTTTAT+AGG | 0.256906 | 5.3:+4361513 | MS.gene072818:CDS |
| CCCTCAAAACTTGCTCCTAA+TGG | 0.275240 | 5.3:-4361091 | None:intergenic |
| TGCCTAGAGATGATTGTATA+AGG | 0.307790 | 5.3:+4361495 | MS.gene072818:CDS |
| GTAGATATCCCCATTGGATT+TGG | 0.319057 | 5.3:-4360961 | None:intergenic |
| GTGAAGGAAACCTTACAAAT+TGG | 0.322127 | 5.3:+4361404 | MS.gene072818:CDS |
| GTGCTTGTTCCTATTACATT+TGG | 0.327161 | 5.3:+4360510 | MS.gene072818:CDS |
| AGAAGTATACCAAATGTAAT+AGG | 0.349217 | 5.3:-4360519 | None:intergenic |
| TTCAGTCCTTTATAGGGTTA+AGG | 0.352357 | 5.3:+4361520 | MS.gene072818:CDS |
| TTCTTTAGGAATTCCCTTCA+TGG | 0.354739 | 5.3:+4360924 | MS.gene072818:intron |
| ATAAATCCTTAACCCTATAA+AGG | 0.362973 | 5.3:-4361526 | None:intergenic |
| TTCTCTAGGAATTCCTTTCA+TGG | 0.378518 | 5.3:+4361118 | MS.gene072818:CDS |
| ACTTCATTGAGGCATTTAAC+AGG | 0.386908 | 5.3:+4360253 | MS.gene072818:CDS |
| TGGGTTGATGGAAGGAGGAC+AGG | 0.389013 | 5.3:+4361062 | MS.gene072818:intron |
| AAACTGTCTGTAGATGTAAA+AGG | 0.389736 | 5.3:+4360463 | MS.gene072818:CDS |
| ACATTTGGTATACTTCTAAT+CGG | 0.398065 | 5.3:+4360525 | MS.gene072818:CDS |
| AAGGGATTCAGTCCTTTATA+GGG | 0.415621 | 5.3:+4361514 | MS.gene072818:CDS |
| TGCTTATGTTGATCAGTTTG+TGG | 0.431652 | 5.3:+4360293 | MS.gene072818:CDS |
| TCTGCAGCTTCCAATTTGTA+AGG | 0.440495 | 5.3:-4361414 | None:intergenic |
| CTGGTGGATCTTAGCGAATC+CGG | 0.449377 | 5.3:+4361458 | MS.gene072818:CDS |
| ACACCCTTGCCAAATCCAAT+GGG | 0.462345 | 5.3:+4360952 | MS.gene072818:CDS |
| AGGCACGCCACCTGCACTGC+CGG | 0.464599 | 5.3:-4361477 | None:intergenic |
| CTTAGCGAATCCGGCAGTGC+AGG | 0.472560 | 5.3:+4361467 | MS.gene072818:CDS |
| TTTGGTCTGCCAACTGCAAC+AGG | 0.481088 | 5.3:+4360333 | MS.gene072818:CDS |
| GAACTCATACAAAATCCAAC+GGG | 0.503113 | 5.3:+4361146 | MS.gene072818:CDS |
| GCCTAGAGATGATTGTATAA+GGG | 0.504026 | 5.3:+4361496 | MS.gene072818:CDS |
| GAGGACAGGGAAAATCCATT+AGG | 0.505219 | 5.3:+4361076 | MS.gene072818:CDS |
| GGGTTGATGGAAGGAGGACA+GGG | 0.515729 | 5.3:+4361063 | MS.gene072818:intron |
| TAAGCAATCACAAGTTCTGC+TGG | 0.522599 | 5.3:-4360276 | None:intergenic |
| CCATCCTCACCTGTTGCAGT+TGG | 0.529149 | 5.3:-4360342 | None:intergenic |
| AAGGGTGTCGTGACCATGAA+GGG | 0.529465 | 5.3:-4360937 | None:intergenic |
| ATGAGTTCCGTGACCATGAA+AGG | 0.530009 | 5.3:-4361131 | None:intergenic |
| AGCGAATCCGGCAGTGCAGG+TGG | 0.546349 | 5.3:+4361470 | MS.gene072818:CDS |
| AGGAATTCCTTTCATGGTCA+CGG | 0.546572 | 5.3:+4361124 | MS.gene072818:CDS |
| AACTTTAAAATGTGAAGTGA+AGG | 0.547025 | 5.3:+4361388 | MS.gene072818:CDS |
| GACACCCTTGCCAAATCCAA+TGG | 0.548294 | 5.3:+4360951 | MS.gene072818:CDS |
| ACCAATGTAGATATCCCCAT+TGG | 0.553398 | 5.3:-4360967 | None:intergenic |
| TCCAATGGGGATATCTACAT+TGG | 0.566032 | 5.3:+4360966 | MS.gene072818:CDS |
| CAAGGGTGTCGTGACCATGA+AGG | 0.571574 | 5.3:-4360938 | None:intergenic |
| ATCCCCATTGGATTTGGCAA+GGG | 0.571786 | 5.3:-4360955 | None:intergenic |
| TATCCCCATTGGATTTGGCA+AGG | 0.575924 | 5.3:-4360956 | None:intergenic |
| AATGAAGTCCTCTTCACTTG+AGG | 0.591509 | 5.3:-4360238 | None:intergenic |
| TCCTCTTCACTTGAGGAGCA+TGG | 0.591864 | 5.3:-4360231 | None:intergenic |
| TTCTTGTGCAGTTCATAACA+TGG | 0.594964 | 5.3:+4361313 | MS.gene072818:intron |
| GAATGTGTTTAGCATTACAC+AGG | 0.595496 | 5.3:+4360485 | MS.gene072818:CDS |
| ACCATGCTCCTCAAGTGAAG+AGG | 0.597142 | 5.3:+4360230 | MS.gene072818:CDS |
| TCCCTTATACAATCATCTCT+AGG | 0.599005 | 5.3:-4361497 | None:intergenic |
| ACCAATGTAGAATTCCCCGT+TGG | 0.603162 | 5.3:-4361161 | None:intergenic |
| TTTCAGATTGAGCATGAAGG+AGG | 0.605954 | 5.3:+4359867 | None:intergenic |
| GCAGTCCGCAAGGTACCGAC+TGG | 0.607811 | 5.3:-4361336 | None:intergenic |
| TCCAACGGGGAATTCTACAT+TGG | 0.609317 | 5.3:+4361160 | MS.gene072818:CDS |
| GGAACTCATACAAAATCCAA+CGG | 0.636643 | 5.3:+4361145 | MS.gene072818:CDS |
| ACCGCACATAGCAGTCCGCA+AGG | 0.644223 | 5.3:-4361346 | None:intergenic |
| CATGGCCAGTCGGTACCTTG+CGG | 0.661265 | 5.3:+4361331 | MS.gene072818:CDS |
| AAGTGAAGAGGACTTCATTG+AGG | 0.678458 | 5.3:+4360242 | MS.gene072818:CDS |
| ACCTTGCGGACTGCTATGTG+CGG | 0.680377 | 5.3:+4361345 | MS.gene072818:CDS |
| CAGTTCATAACATGGCCAGT+CGG | 0.687809 | 5.3:+4361321 | MS.gene072818:intron |
| CACCCTTGCCAAATCCAATG+GGG | 0.728698 | 5.3:+4360953 | MS.gene072818:CDS |
| AACTCATACAAAATCCAACG+GGG | 0.781967 | 5.3:+4361147 | MS.gene072818:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAATAATTAGTAGTTAA+TGG | + | chr5.3:4360386-4360405 | MS.gene072818:intron | 10.0% |
| !!! | ATTTTATAATCTAAAAATCG+AGG | - | chr5.3:4360618-4360637 | None:intergenic | 15.0% |
| !!! | GATTTTTAGATTATAAAATC+CGG | + | chr5.3:4360619-4360638 | MS.gene072818:intron | 15.0% |
| !!! | TTTTATAATCTAAAAATCGA+GGG | - | chr5.3:4360617-4360636 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTCATTTAGAAAT+GGG | + | chr5.3:4360649-4360668 | MS.gene072818:intron | 15.0% |
| !!! | TTTTTTTTGTCATTTAGAAA+TGG | + | chr5.3:4360648-4360667 | MS.gene072818:intron | 15.0% |
| !! | AATATTTGCATATCGAAAAA+AGG | - | chr5.3:4360370-4360389 | None:intergenic | 20.0% |
| !! | ATATTTGCATATCGAAAAAA+GGG | - | chr5.3:4360369-4360388 | None:intergenic | 20.0% |
| !! | TATAATTTCTCAGATACATT+TGG | + | chr5.3:4360554-4360573 | MS.gene072818:intron | 20.0% |
| !!! | TTTGTTTCTATAATCAGATA+AGG | + | chr5.3:4359979-4359998 | MS.gene072818:intron | 20.0% |
| ! | ACATTTGGTATACTTCTAAT+CGG | + | chr5.3:4360525-4360544 | MS.gene072818:CDS | 25.0% |
| ! | ATAAATCCTTAACCCTATAA+AGG | - | chr5.3:4361529-4361548 | None:intergenic | 25.0% |
| !! | AGAAAAGAATTTTACACATC+TGG | + | chr5.3:4360766-4360785 | MS.gene072818:intron | 25.0% |
| !! | AGAAGTATACCAAATGTAAT+AGG | - | chr5.3:4360522-4360541 | None:intergenic | 25.0% |
| !! | TGAAAATTTTGCACTGAAAT+CGG | + | chr5.3:4359921-4359940 | MS.gene072818:intron | 25.0% |
| !! | TTCAAGGATTTTTACACATT+TGG | + | chr5.3:4360715-4360734 | MS.gene072818:intron | 25.0% |
| !!! | AACTTTAAAATGTGAAGTGA+AGG | + | chr5.3:4361388-4361407 | MS.gene072818:CDS | 25.0% |
| !!! | TGGATTTTAGAATTCGAAAA+GGG | + | chr5.3:4360735-4360754 | MS.gene072818:intron | 25.0% |
| !!! | TTGGATTTTAGAATTCGAAA+AGG | + | chr5.3:4360734-4360753 | MS.gene072818:intron | 25.0% |
| AAACTGTCTGTAGATGTAAA+AGG | + | chr5.3:4360463-4360482 | MS.gene072818:CDS | 30.0% | |
| AGCAACAATAATAAGAGTGA+TGG | - | chr5.3:4360438-4360457 | None:intergenic | 30.0% | |
| ATCACTCTTATTATTGTTGC+TGG | + | chr5.3:4360437-4360456 | MS.gene072818:intron | 30.0% | |
| GCAACAATAATAAGAGTGAT+GGG | - | chr5.3:4360437-4360456 | None:intergenic | 30.0% | |
| GTGAAGTCTATTCTTGTATT+TGG | + | chr5.3:4360315-4360334 | MS.gene072818:CDS | 30.0% | |
| GTGTATCATATGTAAAAAGC+TGG | + | chr5.3:4361439-4361458 | MS.gene072818:CDS | 30.0% | |
| TAAACCCCATAAAAGAATGT+CGG | - | chr5.3:4360100-4360119 | None:intergenic | 30.0% | |
| TATCATATGTAAAAAGCTGG+TGG | + | chr5.3:4361442-4361461 | MS.gene072818:CDS | 30.0% | |
| TTAGATGGAACAATATACGA+GGG | + | chr5.3:4361035-4361054 | MS.gene072818:intron | 30.0% | |
| ! | CTAAAAATCGAGGGAATTTT+TGG | - | chr5.3:4360608-4360627 | None:intergenic | 30.0% |
| ! | CTACATTGGTAACTTCAATA+GGG | + | chr5.3:4361174-4361193 | MS.gene072818:intron | 30.0% |
| ! | GCAAATATCAATGTCCATTT+TGG | + | chr5.3:4360004-4360023 | MS.gene072818:intron | 30.0% |
| ! | TCTACATTGGTAACTTCAAT+AGG | + | chr5.3:4361173-4361192 | MS.gene072818:intron | 30.0% |
| !! | AGGGAATTTTTGGAAAAAGA+GGG | - | chr5.3:4360598-4360617 | None:intergenic | 30.0% |
| !! | TTGCTTTTGAATCTCCAAAA+TGG | - | chr5.3:4360021-4360040 | None:intergenic | 30.0% |
| !!! | TCATTTTTTAGCACTTGAAC+AGG | + | chr5.3:4360182-4360201 | MS.gene072818:intron | 30.0% |
| AACAATATACGAGGGTGATT+GGG | + | chr5.3:4361043-4361062 | MS.gene072818:intron | 35.0% | |
| AACTCATACAAAATCCAACG+GGG | + | chr5.3:4361147-4361166 | MS.gene072818:CDS | 35.0% | |
| AAGGGATTCAGTCCTTTATA+GGG | + | chr5.3:4361514-4361533 | MS.gene072818:CDS | 35.0% | |
| AATGGAAGAAACTATTGCTG+TGG | + | chr5.3:4360404-4360423 | MS.gene072818:intron | 35.0% | |
| AGTTAGCCACAATGTTGAAT+TGG | - | chr5.3:4360689-4360708 | None:intergenic | 35.0% | |
| ATGACAAAAAAAACACGCTC+CGG | - | chr5.3:4360641-4360660 | None:intergenic | 35.0% | |
| GAAATCGGAAAGTTAACACA+AGG | + | chr5.3:4359936-4359955 | MS.gene072818:intron | 35.0% | |
| GAACTCATACAAAATCCAAC+GGG | + | chr5.3:4361146-4361165 | MS.gene072818:CDS | 35.0% | |
| GAATGTGTTTAGCATTACAC+AGG | + | chr5.3:4360485-4360504 | MS.gene072818:CDS | 35.0% | |
| GCCTAGAGATGATTGTATAA+GGG | + | chr5.3:4361496-4361515 | MS.gene072818:CDS | 35.0% | |
| GGAACTCATACAAAATCCAA+CGG | + | chr5.3:4361145-4361164 | MS.gene072818:CDS | 35.0% | |
| GTAACTTCAATAGGGTTGTT+TGG | + | chr5.3:4361182-4361201 | MS.gene072818:intron | 35.0% | |
| GTGAAGGAAACCTTACAAAT+TGG | + | chr5.3:4361404-4361423 | MS.gene072818:CDS | 35.0% | |
| GTGCTTGTTCCTATTACATT+TGG | + | chr5.3:4360510-4360529 | MS.gene072818:CDS | 35.0% | |
| GTTAGATGGAACAATATACG+AGG | + | chr5.3:4361034-4361053 | MS.gene072818:intron | 35.0% | |
| TAAGGGATTCAGTCCTTTAT+AGG | + | chr5.3:4361513-4361532 | MS.gene072818:CDS | 35.0% | |
| TCCCTTATACAATCATCTCT+AGG | - | chr5.3:4361500-4361519 | None:intergenic | 35.0% | |
| TCCTGTCAAGCAAAAATTGA+TGG | - | chr5.3:4361224-4361243 | None:intergenic | 35.0% | |
| TGAAGTTACCAATGTAGACA+GGG | + | chr5.3:4360856-4360875 | MS.gene072818:intron | 35.0% | |
| TGCCTAGAGATGATTGTATA+AGG | + | chr5.3:4361495-4361514 | MS.gene072818:CDS | 35.0% | |
| TGCTTATGTTGATCAGTTTG+TGG | + | chr5.3:4360293-4360312 | MS.gene072818:CDS | 35.0% | |
| TTCAGTCCTTTATAGGGTTA+AGG | + | chr5.3:4361520-4361539 | MS.gene072818:CDS | 35.0% | |
| TTCTTGTGCAGTTCATAACA+TGG | + | chr5.3:4361313-4361332 | MS.gene072818:intron | 35.0% | |
| TTGAAGTTACCAATGTAGAC+AGG | + | chr5.3:4360855-4360874 | MS.gene072818:intron | 35.0% | |
| ! | ACTTCATTGAGGCATTTAAC+AGG | + | chr5.3:4360253-4360272 | MS.gene072818:CDS | 35.0% |
| ! | AGTCTTCCGACATTCTTTTA+TGG | + | chr5.3:4360091-4360110 | MS.gene072818:intron | 35.0% |
| ! | CACTCAAAACTTGTTCATGA+TGG | - | chr5.3:4360900-4360919 | None:intergenic | 35.0% |
| ! | GTCTTCCGACATTCTTTTAT+GGG | + | chr5.3:4360092-4360111 | MS.gene072818:intron | 35.0% |
| ! | TACATTGGTAACTTCAAGAG+CGG | - | chr5.3:4360852-4360871 | None:intergenic | 35.0% |
| ! | TCTTCCGACATTCTTTTATG+GGG | + | chr5.3:4360093-4360112 | MS.gene072818:intron | 35.0% |
| ! | TTCTCTAGGAATTCCTTTCA+TGG | + | chr5.3:4361118-4361137 | MS.gene072818:CDS | 35.0% |
| ! | TTCTTTAGGAATTCCCTTCA+TGG | + | chr5.3:4360924-4360943 | MS.gene072818:intron | 35.0% |
| ! | TTTGAGAGTGATCTTTTCCA+TGG | + | chr5.3:4360993-4361012 | MS.gene072818:intron | 35.0% |
| !! | CACAAGGCATCTTTCATTTT+TGG | + | chr5.3:4359952-4359971 | MS.gene072818:intron | 35.0% |
| !! | GAATTTTTGGAAAAAGAGGG+GGG | - | chr5.3:4360595-4360614 | None:intergenic | 35.0% |
| !! | GAGGGAATTTTTGGAAAAAG+AGG | - | chr5.3:4360599-4360618 | None:intergenic | 35.0% |
| !! | GGAATTTTTGGAAAAAGAGG+GGG | - | chr5.3:4360596-4360615 | None:intergenic | 35.0% |
| !! | GGGAATTTTTGGAAAAAGAG+GGG | - | chr5.3:4360597-4360616 | None:intergenic | 35.0% |
| !! | GTTTTGAGTGCGAATTCTTT+AGG | + | chr5.3:4360910-4360929 | MS.gene072818:intron | 35.0% |
| !!! | GTGGCTAACTGTTTTTTTCA+AGG | + | chr5.3:4360699-4360718 | MS.gene072818:intron | 35.0% |
| AAGTGAAGAGGACTTCATTG+AGG | + | chr5.3:4360242-4360261 | MS.gene072818:CDS | 40.0% | |
| AATGAAGTCCTCTTCACTTG+AGG | - | chr5.3:4360241-4360260 | None:intergenic | 40.0% | |
| ACCAATGTAGATATCCCCAT+TGG | - | chr5.3:4360970-4360989 | None:intergenic | 40.0% | |
| AGGAATTCCTTTCATGGTCA+CGG | + | chr5.3:4361124-4361143 | MS.gene072818:CDS | 40.0% | |
| ATGTGTACTTTCCTTTGCCA+TGG | - | chr5.3:4361013-4361032 | None:intergenic | 40.0% | |
| CCACAATGTTGAATTGGTCA+TGG | - | chr5.3:4360683-4360702 | None:intergenic | 40.0% | |
| CCATGACCAATTCAACATTG+TGG | + | chr5.3:4360680-4360699 | MS.gene072818:intron | 40.0% | |
| GAACAATATACGAGGGTGAT+TGG | + | chr5.3:4361042-4361061 | MS.gene072818:intron | 40.0% | |
| GGGTTGTTTGGTTATTGTGT+TGG | + | chr5.3:4361194-4361213 | MS.gene072818:intron | 40.0% | |
| GTAGATATCCCCATTGGATT+TGG | - | chr5.3:4360964-4360983 | None:intergenic | 40.0% | |
| TAAGCAATCACAAGTTCTGC+TGG | - | chr5.3:4360279-4360298 | None:intergenic | 40.0% | |
| TCCAATGGGGATATCTACAT+TGG | + | chr5.3:4360966-4360985 | MS.gene072818:CDS | 40.0% | |
| TCTCATCATGTTGCTAGACA+TGG | + | chr5.3:4361290-4361309 | MS.gene072818:intron | 40.0% | |
| TCTGCAGCTTCCAATTTGTA+AGG | - | chr5.3:4361417-4361436 | None:intergenic | 40.0% | |
| TTACCAATGTAGACAGGGAA+AGG | + | chr5.3:4360861-4360880 | MS.gene072818:intron | 40.0% | |
| ! | ACATTGGTAACTTCAAGAGC+GGG | - | chr5.3:4360851-4360870 | None:intergenic | 40.0% |
| ! | AGTGATCTTTTCCATGGCAA+AGG | + | chr5.3:4360999-4361018 | MS.gene072818:intron | 40.0% |
| ! | ATGGCAAAGGAAAGTACACA+TGG | + | chr5.3:4361012-4361031 | MS.gene072818:intron | 40.0% |
| ! | GCCATCAATTTTTGCTTGAC+AGG | + | chr5.3:4361220-4361239 | MS.gene072818:intron | 40.0% |
| ! | GGAAAGTACACATGGTTAGA+TGG | + | chr5.3:4361020-4361039 | MS.gene072818:intron | 40.0% |
| ! | TCCATTAGGAGCAAGTTTTG+AGG | + | chr5.3:4361090-4361109 | MS.gene072818:CDS | 40.0% |
| !! | CCATTAGGAGCAAGTTTTGA+GGG | + | chr5.3:4361091-4361110 | MS.gene072818:CDS | 40.0% |
| !!! | GTTTTGAGGGTGAATTCTCT+AGG | + | chr5.3:4361104-4361123 | MS.gene072818:CDS | 40.0% |
| ACACCCTTGCCAAATCCAAT+GGG | + | chr5.3:4360952-4360971 | MS.gene072818:CDS | 45.0% | |
| ACCAATGTAGAATTCCCCGT+TGG | - | chr5.3:4361164-4361183 | None:intergenic | 45.0% | |
| ATCCCCATTGGATTTGGCAA+GGG | - | chr5.3:4360958-4360977 | None:intergenic | 45.0% | |
| ATGAGTTCCGTGACCATGAA+AGG | - | chr5.3:4361134-4361153 | None:intergenic | 45.0% | |
| CACAACATACATAGTCCGCA+AGG | - | chr5.3:4361269-4361288 | None:intergenic | 45.0% | |
| CAGAAAATCGACATACCTGC+TGG | - | chr5.3:4360123-4360142 | None:intergenic | 45.0% | |
| CAGTTCATAACATGGCCAGT+CGG | + | chr5.3:4361321-4361340 | MS.gene072818:intron | 45.0% | |
| GAGGACAGGGAAAATCCATT+AGG | + | chr5.3:4361076-4361095 | MS.gene072818:CDS | 45.0% | |
| GTTGAACTTTCCCTTGCCAT+GGG | + | chr5.3:4360821-4360840 | MS.gene072818:intron | 45.0% | |
| TATCCCCATTGGATTTGGCA+AGG | - | chr5.3:4360959-4360978 | None:intergenic | 45.0% | |
| TCCAACGGGGAATTCTACAT+TGG | + | chr5.3:4361160-4361179 | MS.gene072818:CDS | 45.0% | |
| TGTCCTTTCCCTGTCTACAT+TGG | - | chr5.3:4360867-4360886 | None:intergenic | 45.0% | |
| ! | CCCTCAAAACTTGCTCCTAA+TGG | - | chr5.3:4361094-4361113 | None:intergenic | 45.0% |
| ! | CTTTTATGGGGTTTACCAGC+AGG | + | chr5.3:4360105-4360124 | MS.gene072818:intron | 45.0% |
| ! | TTTTTGCCTAGAGAGCCTTG+CGG | + | chr5.3:4361251-4361270 | MS.gene072818:intron | 45.0% |
| !!! | CAGCAGGTATGTCGATTTTC+TGG | + | chr5.3:4360121-4360140 | MS.gene072818:intron | 45.0% |
| ACCATGCTCCTCAAGTGAAG+AGG | + | chr5.3:4360230-4360249 | MS.gene072818:CDS | 50.0% | |
| CACCCTTGCCAAATCCAATG+GGG | + | chr5.3:4360953-4360972 | MS.gene072818:CDS | 50.0% | |
| CGTTGAACTTTCCCTTGCCA+TGG | + | chr5.3:4360820-4360839 | MS.gene072818:intron | 50.0% | |
| GACACCCTTGCCAAATCCAA+TGG | + | chr5.3:4360951-4360970 | MS.gene072818:CDS | 50.0% | |
| GCACTAACAGTGTGCTAGCA+AGG | - | chr5.3:4360070-4360089 | None:intergenic | 50.0% | |
| GTGCTAGCAAGGACTACACA+AGG | - | chr5.3:4360059-4360078 | None:intergenic | 50.0% | |
| TCCTCTTCACTTGAGGAGCA+TGG | - | chr5.3:4360234-4360253 | None:intergenic | 50.0% | |
| TTTGGTCTGCCAACTGCAAC+AGG | + | chr5.3:4360333-4360352 | MS.gene072818:CDS | 50.0% | |
| ! | ATGTGCGGTTTTCGGTCTGT+AGG | + | chr5.3:4361360-4361379 | MS.gene072818:CDS | 50.0% |
| ! | CTGGTGGATCTTAGCGAATC+CGG | + | chr5.3:4361458-4361477 | MS.gene072818:CDS | 50.0% |
| ! | GGACTGCTATGTGCGGTTTT+CGG | + | chr5.3:4361352-4361371 | MS.gene072818:CDS | 50.0% |
| ! | TGTGCGGTTTTCGGTCTGTA+GGG | + | chr5.3:4361361-4361380 | MS.gene072818:CDS | 50.0% |
| !! | AAGGGTGTCGTGACCATGAA+GGG | - | chr5.3:4360940-4360959 | None:intergenic | 50.0% |
| !! | AGGGTGATTGGGTTGATGGA+AGG | + | chr5.3:4361054-4361073 | MS.gene072818:intron | 50.0% |
| !! | GTGATTGGGTTGATGGAAGG+AGG | + | chr5.3:4361057-4361076 | MS.gene072818:intron | 50.0% |
| !! | TACGAGGGTGATTGGGTTGA+TGG | + | chr5.3:4361050-4361069 | MS.gene072818:intron | 50.0% |
| !! | TTCAAGAGCGGGTTTTCCCA+TGG | - | chr5.3:4360840-4360859 | None:intergenic | 50.0% |
| CATAGTCCGCAAGGCTCTCT+AGG | - | chr5.3:4361260-4361279 | None:intergenic | 55.0% | |
| CCAACTGCAACAGGTGAGGA+TGG | + | chr5.3:4360342-4360361 | MS.gene072818:intron | 55.0% | |
| CCATCCTCACCTGTTGCAGT+TGG | - | chr5.3:4360345-4360364 | None:intergenic | 55.0% | |
| TCTGCCAACTGCAACAGGTG+AGG | + | chr5.3:4360338-4360357 | MS.gene072818:intron | 55.0% | |
| ! | ACCTTGCGGACTGCTATGTG+CGG | + | chr5.3:4361345-4361364 | MS.gene072818:CDS | 55.0% |
| !! | AGCGGGTTTTCCCATGGCAA+GGG | - | chr5.3:4360834-4360853 | None:intergenic | 55.0% |
| !! | CAAGGGTGTCGTGACCATGA+AGG | - | chr5.3:4360941-4360960 | None:intergenic | 55.0% |
| !! | GGGTTGATGGAAGGAGGACA+GGG | + | chr5.3:4361063-4361082 | MS.gene072818:intron | 55.0% |
| !! | TGGGTTGATGGAAGGAGGAC+AGG | + | chr5.3:4361062-4361081 | MS.gene072818:intron | 55.0% |
| ACCGCACATAGCAGTCCGCA+AGG | - | chr5.3:4361349-4361368 | None:intergenic | 60.0% | |
| CATGGCCAGTCGGTACCTTG+CGG | + | chr5.3:4361331-4361350 | MS.gene072818:CDS | 60.0% | |
| CTTAGCGAATCCGGCAGTGC+AGG | + | chr5.3:4361467-4361486 | MS.gene072818:CDS | 60.0% | |
| !! | GAGCGGGTTTTCCCATGGCA+AGG | - | chr5.3:4360835-4360854 | None:intergenic | 60.0% |
| AGCGAATCCGGCAGTGCAGG+TGG | + | chr5.3:4361470-4361489 | MS.gene072818:CDS | 65.0% | |
| !! | GCAGTCCGCAAGGTACCGAC+TGG | - | chr5.3:4361339-4361358 | None:intergenic | 65.0% |
| AGGCACGCCACCTGCACTGC+CGG | - | chr5.3:4361480-4361499 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 4359880 | 4361553 | 4359880 | ID=MS.gene072818 |
| chr5.3 | mRNA | 4359880 | 4361553 | 4359880 | ID=MS.gene072818.t1;Parent=MS.gene072818 |
| chr5.3 | exon | 4359880 | 4359888 | 4359880 | ID=MS.gene072818.t1.exon1;Parent=MS.gene072818.t1 |
| chr5.3 | CDS | 4359880 | 4359888 | 4359880 | ID=cds.MS.gene072818.t1;Parent=MS.gene072818.t1 |
| chr5.3 | exon | 4360228 | 4360354 | 4360228 | ID=MS.gene072818.t1.exon2;Parent=MS.gene072818.t1 |
| chr5.3 | CDS | 4360228 | 4360354 | 4360228 | ID=cds.MS.gene072818.t1;Parent=MS.gene072818.t1 |
| chr5.3 | exon | 4360463 | 4360546 | 4360463 | ID=MS.gene072818.t1.exon3;Parent=MS.gene072818.t1 |
| chr5.3 | CDS | 4360463 | 4360546 | 4360463 | ID=cds.MS.gene072818.t1;Parent=MS.gene072818.t1 |
| chr5.3 | exon | 4360932 | 4360987 | 4360932 | ID=MS.gene072818.t1.exon4;Parent=MS.gene072818.t1 |
| chr5.3 | CDS | 4360932 | 4360987 | 4360932 | ID=cds.MS.gene072818.t1;Parent=MS.gene072818.t1 |
| chr5.3 | exon | 4361076 | 4361181 | 4361076 | ID=MS.gene072818.t1.exon5;Parent=MS.gene072818.t1 |
| chr5.3 | CDS | 4361076 | 4361181 | 4361076 | ID=cds.MS.gene072818.t1;Parent=MS.gene072818.t1 |
| chr5.3 | exon | 4361324 | 4361553 | 4361324 | ID=MS.gene072818.t1.exon6;Parent=MS.gene072818.t1 |
| chr5.3 | CDS | 4361324 | 4361553 | 4361324 | ID=cds.MS.gene072818.t1;Parent=MS.gene072818.t1 |
| Gene Sequence |
| Protein sequence |
