AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072937

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072937.t1 MTR_3g107880 98.688 381 5 0 1 381 1 381 0.0 777
MS.gene072937.t1 MTR_3g107880 98.425 381 5 1 1 381 1 380 0.0 771
MS.gene072937.t1 MTR_3g107880 99.071 323 3 0 59 381 1 323 0.0 660
MS.gene072937.t1 MTR_4g116420 58.689 305 123 2 76 377 79 383 1.02e-128 375
MS.gene072937.t1 MTR_5g024340 54.276 304 136 2 74 377 77 377 6.85e-114 337
MS.gene072937.t1 MTR_1g086350 46.356 343 157 8 55 377 50 385 1.34e-90 278
MS.gene072937.t1 MTR_1g086350 46.291 337 156 7 59 377 40 369 1.90e-90 277
MS.gene072937.t1 MTR_2g033000 43.620 337 174 6 55 378 34 367 6.60e-87 268
MS.gene072937.t1 MTR_4g123080 43.675 332 163 6 63 377 37 361 1.20e-82 256
MS.gene072937.t1 MTR_4g123080 43.675 332 163 6 63 377 55 379 1.21e-82 257
MS.gene072937.t1 MTR_1g086350 48.727 275 116 7 121 377 16 283 4.49e-77 239
MS.gene072937.t1 MTR_1g014640 36.667 270 146 8 80 345 75 323 1.53e-40 146
MS.gene072937.t1 MTR_1g013400 36.667 270 146 8 80 345 75 323 1.53e-40 146
MS.gene072937.t1 MTR_1g014190 31.232 349 172 10 61 356 5 338 1.99e-40 146
MS.gene072937.t1 MTR_1g014190 30.469 384 188 12 35 356 10 376 3.12e-40 147
MS.gene072937.t1 MTR_3g105880 30.312 353 174 9 59 356 3 338 9.34e-40 145
MS.gene072937.t1 MTR_4g007440 30.938 320 155 7 81 346 22 329 1.52e-39 144
MS.gene072937.t1 MTR_1g050520 34.859 284 151 9 77 346 382 645 2.41e-39 148
MS.gene072937.t1 MTR_6g081850 33.798 287 147 9 88 347 50 320 3.57e-39 142
MS.gene072937.t1 MTR_3g105730 35.926 270 148 8 80 345 32 280 1.08e-38 140
MS.gene072937.t1 MTR_3g105730 35.926 270 148 8 80 345 10 258 1.59e-38 139
MS.gene072937.t1 MTR_4g123080 46.296 162 75 4 223 377 110 266 1.61e-38 139
MS.gene072937.t1 MTR_3g105880 32.566 304 140 7 59 312 3 291 4.56e-38 139
MS.gene072937.t1 MTR_5g071550 35.316 269 140 7 90 347 131 376 1.42e-37 139
MS.gene072937.t1 MTR_1g115570 35.741 263 142 7 90 349 103 341 1.98e-37 138
MS.gene072937.t1 MTR_3g464650 33.446 296 159 8 62 347 49 316 1.57e-36 135
MS.gene072937.t1 MTR_2g008850 36.364 231 128 5 121 346 19 235 2.19e-35 130
MS.gene072937.t1 MTR_3g464700 37.333 225 115 5 90 308 95 299 2.84e-35 132
MS.gene072937.t1 MTR_3g074610 35.593 236 133 5 116 346 61 282 3.65e-35 130
MS.gene072937.t1 MTR_3g091060 33.099 284 164 7 69 348 82 343 7.97e-35 132
MS.gene072937.t1 MTR_5g063940 34.630 257 141 8 95 346 1 235 8.24e-35 128
MS.gene072937.t1 MTR_2g008850 36.207 232 129 5 120 346 64 281 1.96e-34 129
MS.gene072937.t1 MTR_5g063940 34.241 257 142 6 95 346 48 282 3.43e-34 128
MS.gene072937.t1 MTR_4g094208 33.852 257 143 6 95 346 43 277 1.27e-32 124
MS.gene072937.t1 MTR_5g071550 37.333 225 109 6 90 305 131 332 5.17e-32 124
MS.gene072937.t1 MTR_2g078760 33.852 257 143 9 95 346 20 254 3.51e-31 119
MS.gene072937.t1 MTR_2g078760 33.852 257 143 9 95 346 99 333 8.59e-31 120
MS.gene072937.t1 MTR_8g463130 33.195 241 139 7 113 346 57 282 1.21e-28 113
MS.gene072937.t1 MTR_8g463130 33.195 241 139 7 113 346 29 254 1.48e-28 112
MS.gene072937.t1 MTR_2g040500 29.012 324 164 10 84 348 222 538 3.70e-28 115
MS.gene072937.t1 MTR_3g491830 26.910 301 172 7 79 342 57 346 7.91e-28 113
MS.gene072937.t1 MTR_4g125810 30.820 305 155 11 84 343 208 501 9.32e-28 114
MS.gene072937.t1 MTR_4g094542 34.317 271 146 10 83 345 118 364 1.03e-27 112
MS.gene072937.t1 MTR_1g015110 29.870 308 159 11 90 348 247 546 3.35e-27 113
MS.gene072937.t1 MTR_3g068200 31.801 261 136 7 118 343 120 373 6.24e-27 110
MS.gene072937.t1 MTR_1g028300 33.451 284 151 10 81 343 111 377 6.32e-26 107
MS.gene072937.t1 MTR_8g102550 28.435 313 171 9 84 362 104 397 1.16e-25 107
MS.gene072937.t1 MTR_5g009370 32.773 238 138 5 89 315 59 285 1.63e-25 105
MS.gene072937.t1 MTR_5g080680 33.333 246 121 8 90 313 109 333 3.51e-25 105
MS.gene072937.t1 MTR_3g104710 30.435 276 148 9 110 348 274 542 1.36e-24 105
MS.gene072937.t1 MTR_2g078760 33.493 209 116 8 95 298 99 289 1.76e-22 96.7
MS.gene072937.t1 MTR_3g105730 37.888 161 89 4 80 239 32 182 4.84e-22 94.0
MS.gene072937.t1 MTR_5g071550 40.000 150 69 4 90 234 131 264 3.05e-20 90.1
MS.gene072937.t1 MTR_4g120410 26.774 310 169 12 92 349 53 356 2.55e-18 85.9
MS.gene072937.t1 MTR_2g435550 31.839 223 106 10 123 305 94 310 7.57e-18 84.3
MS.gene072937.t1 MTR_7g100240 27.431 288 148 12 117 348 66 348 8.10e-18 84.3
MS.gene072937.t1 MTR_3g032700 28.400 250 139 6 121 333 68 314 8.37e-18 84.7
MS.gene072937.t1 MTR_2g435550 31.839 223 106 10 123 305 80 296 8.78e-18 84.0
MS.gene072937.t1 MTR_2g435550 31.839 223 106 10 123 305 94 310 1.09e-17 84.3
MS.gene072937.t1 MTR_3g032660 27.778 252 142 6 119 333 66 314 2.36e-17 83.6
MS.gene072937.t1 MTR_1g112840 27.562 283 144 12 117 343 76 353 2.94e-17 83.2
MS.gene072937.t1 MTR_1g016620 29.289 239 117 9 104 302 56 282 3.70e-17 82.0
MS.gene072937.t1 MTR_4g118340 29.434 265 133 11 121 343 86 338 4.74e-17 82.4
MS.gene072937.t1 MTR_1g067210 27.341 267 143 10 105 331 60 315 1.12e-16 81.3
MS.gene072937.t1 MTR_7g090530 27.803 223 127 6 121 309 69 291 1.18e-16 81.6
MS.gene072937.t1 MTR_7g081020 26.014 296 155 12 120 360 75 361 1.81e-16 80.5
MS.gene072937.t1 MTR_1g083690 27.839 273 140 12 121 346 89 351 3.12e-16 79.7
MS.gene072937.t1 MTR_5g080680 34.392 189 88 7 90 256 109 283 4.62e-16 78.2
MS.gene072937.t1 MTR_1g116260 26.132 287 150 12 120 350 79 359 6.50e-16 79.0
MS.gene072937.t1 MTR_8g074930 26.459 257 144 10 117 333 74 325 1.25e-15 78.2
MS.gene072937.t1 MTR_7g081020 27.511 229 122 9 120 309 75 298 3.00e-15 76.3
MS.gene072937.t1 MTR_7g070510 27.562 283 145 10 121 349 92 368 1.66e-14 75.1
MS.gene072937.t1 MTR_7g080170 35.417 144 69 4 182 307 98 235 2.69e-14 73.9
MS.gene072937.t1 MTR_7g090550 27.734 256 136 9 121 336 70 316 3.02e-14 74.3
MS.gene072937.t1 MTR_7g112490 28.195 266 127 11 121 333 109 363 3.25e-14 73.9
MS.gene072937.t1 MTR_2g033910 28.685 251 138 10 117 331 70 315 3.33e-14 73.6
MS.gene072937.t1 MTR_7g112490 28.195 266 127 11 121 333 91 345 3.35e-14 73.6
MS.gene072937.t1 MTR_7g080170 35.417 144 69 4 182 307 206 343 5.28e-14 73.6
MS.gene072937.t1 MTR_5g005810 29.098 244 148 10 120 345 335 571 7.35e-14 73.6
MS.gene072937.t1 MTR_7g021530 35.172 145 70 5 182 308 140 278 2.27e-13 71.2
MS.gene072937.t1 MTR_7g060770 26.667 225 126 7 120 305 262 486 3.98e-13 71.2
MS.gene072937.t1 MTR_2g078760 34.483 145 84 5 95 239 99 232 4.79e-13 68.9
MS.gene072937.t1 MTR_7g021530 35.172 145 70 5 182 308 190 328 6.39e-13 70.1
MS.gene072937.t1 MTR_7g021530 35.172 145 70 5 182 308 231 369 9.63e-13 69.7
MS.gene072937.t1 MTR_1g110210 29.008 262 139 12 120 356 67 306 1.59e-12 68.2
MS.gene072937.t1 MTR_4g094208 33.793 145 85 3 95 239 43 176 2.30e-12 66.2
MS.gene072937.t1 MTR_1g075730 21.552 232 142 6 121 345 79 277 1.43e-11 64.7
MS.gene072937.t1 MTR_7g029240 28.906 256 137 13 116 343 61 299 3.67e-11 64.7
MS.gene072937.t1 MTR_4g013295 26.991 226 113 8 119 299 76 294 6.29e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072937.t1 AT2G25620 66.240 391 119 5 1 379 1 390 0.0 513
MS.gene072937.t1 AT2G25620 66.240 391 119 5 1 379 1 390 0.0 513
MS.gene072937.t1 AT2G33700 55.082 305 133 3 74 377 76 377 9.52e-114 337
MS.gene072937.t1 AT3G51470 52.427 309 139 3 71 379 17 317 1.46e-109 324
MS.gene072937.t1 AT3G51470 52.427 309 139 3 71 379 61 361 2.06e-109 325
MS.gene072937.t1 AT3G62260 47.368 342 160 7 53 377 45 383 1.12e-92 283
MS.gene072937.t1 AT3G62260 47.006 334 161 5 57 377 52 382 3.24e-92 282
MS.gene072937.t1 AT3G62260 48.649 296 136 5 95 377 1 293 3.59e-84 258
MS.gene072937.t1 AT1G48040 45.513 312 158 4 75 376 71 380 8.96e-84 260
MS.gene072937.t1 AT3G17250 42.587 317 163 7 75 377 110 421 2.65e-73 234
MS.gene072937.t1 AT5G24940 37.778 270 143 8 80 345 31 279 4.48e-43 155
MS.gene072937.t1 AT5G10740 38.519 270 141 8 80 345 31 279 7.21e-43 153
MS.gene072937.t1 AT5G10740 38.519 270 141 8 80 345 31 279 7.21e-43 153
MS.gene072937.t1 AT5G53140 32.039 309 182 7 47 347 61 349 1.57e-40 148
MS.gene072937.t1 AT5G53140 32.039 309 182 7 47 347 61 349 1.57e-40 148
MS.gene072937.t1 AT4G31750 37.407 270 144 8 80 345 31 279 6.69e-40 144
MS.gene072937.t1 AT4G31750 37.407 270 144 8 80 345 31 279 7.17e-40 144
MS.gene072937.t1 AT4G31750 37.407 270 144 8 80 345 31 279 7.17e-40 144
MS.gene072937.t1 AT2G25070 28.977 352 179 9 61 357 5 340 2.51e-39 144
MS.gene072937.t1 AT2G25070 28.977 352 179 9 61 357 5 340 2.51e-39 144
MS.gene072937.t1 AT4G31860 30.061 326 161 7 80 350 21 334 6.32e-39 142
MS.gene072937.t1 AT1G78200 34.241 257 145 4 95 346 1 238 6.07e-38 137
MS.gene072937.t1 AT1G78200 34.241 257 145 4 95 346 1 238 6.07e-38 137
MS.gene072937.t1 AT2G20630 33.852 257 143 6 95 346 45 279 8.12e-38 137
MS.gene072937.t1 AT2G20630 34.310 239 137 6 113 345 54 278 1.56e-37 137
MS.gene072937.t1 AT1G78200 34.241 257 145 4 95 346 46 283 1.71e-37 137
MS.gene072937.t1 AT1G78200 34.241 257 145 4 95 346 46 283 1.71e-37 137
MS.gene072937.t1 AT1G78200 34.241 257 145 4 95 346 46 283 1.71e-37 137
MS.gene072937.t1 AT1G18030 32.404 287 151 9 88 347 80 350 3.30e-37 138
MS.gene072937.t1 AT4G28400 34.630 257 141 6 95 346 27 261 3.63e-37 135
MS.gene072937.t1 AT4G28400 34.630 257 141 6 95 346 49 283 7.36e-37 135
MS.gene072937.t1 AT4G31860 31.802 283 131 6 80 312 21 291 5.84e-36 133
MS.gene072937.t1 AT2G30020 34.831 267 146 7 90 347 147 394 2.20e-35 134
MS.gene072937.t1 AT1G43900 34.191 272 151 8 80 346 121 369 2.34e-35 133
MS.gene072937.t1 AT2G40860 31.469 286 161 8 75 346 287 551 6.03e-35 135
MS.gene072937.t1 AT2G40860 31.802 283 158 8 75 343 385 646 7.03e-35 136
MS.gene072937.t1 AT1G07160 34.717 265 142 8 90 343 130 374 4.81e-34 130
MS.gene072937.t1 AT1G22280 34.630 257 141 7 95 346 47 281 2.90e-33 125
MS.gene072937.t1 AT1G34750 34.468 235 134 6 115 343 59 279 7.15e-33 124
MS.gene072937.t1 AT1G34750 34.468 235 134 6 115 343 59 279 7.15e-33 124
MS.gene072937.t1 AT1G34750 34.468 235 134 6 115 343 59 279 7.15e-33 124
MS.gene072937.t1 AT3G15260 34.599 237 134 6 116 346 68 289 1.17e-32 124
MS.gene072937.t1 AT3G15260 34.599 237 134 6 116 346 68 289 1.17e-32 124
MS.gene072937.t1 AT1G67820 36.893 206 111 4 120 318 114 307 1.31e-32 127
MS.gene072937.t1 AT1G67820 36.893 206 111 4 120 318 150 343 2.10e-32 127
MS.gene072937.t1 AT2G40180 33.455 275 149 8 90 350 136 390 3.55e-32 125
MS.gene072937.t1 AT4G31860 31.086 267 122 6 80 296 21 275 2.25e-31 120
MS.gene072937.t1 AT1G22280 33.840 263 141 8 95 346 47 287 7.17e-31 119
MS.gene072937.t1 AT2G40860 31.273 275 150 9 75 333 385 636 1.32e-30 123
MS.gene072937.t1 AT2G29380 32.333 300 147 11 82 343 77 358 6.57e-30 118
MS.gene072937.t1 AT4G26080 31.419 296 150 10 90 343 136 420 3.03e-29 117
MS.gene072937.t1 AT1G07430 32.411 253 143 8 74 309 114 355 6.71e-29 117
MS.gene072937.t1 AT2G34740 31.923 260 146 9 95 347 101 336 3.08e-28 113
MS.gene072937.t1 AT3G11410 31.475 305 168 9 33 309 52 343 5.86e-28 114
MS.gene072937.t1 AT5G59220 35.021 237 125 7 90 309 119 343 1.53e-27 112
MS.gene072937.t1 AT5G51760 30.797 276 134 7 118 343 111 379 1.79e-27 112
MS.gene072937.t1 AT1G18030 32.489 237 118 8 88 298 80 300 2.44e-27 110
MS.gene072937.t1 AT5G51760 30.797 276 134 7 118 343 141 409 2.70e-27 112
MS.gene072937.t1 AT4G27800 27.414 321 177 8 81 360 58 363 9.91e-27 110
MS.gene072937.t1 AT5G57050 29.470 302 153 11 90 343 120 409 1.12e-26 110
MS.gene072937.t1 AT5G57050 29.470 302 153 11 90 343 80 369 1.16e-26 110
MS.gene072937.t1 AT4G28400 34.450 209 114 5 95 298 49 239 5.78e-26 105
MS.gene072937.t1 AT1G17550 32.159 227 111 5 119 312 235 451 1.63e-24 105
MS.gene072937.t1 AT1G17550 32.159 227 111 5 119 312 235 451 1.63e-24 105
MS.gene072937.t1 AT1G72770 30.599 317 153 12 90 348 197 504 3.31e-24 104
MS.gene072937.t1 AT1G72770 30.599 317 153 12 90 348 197 504 3.31e-24 104
MS.gene072937.t1 AT1G72770 30.599 317 153 12 90 348 197 504 3.31e-24 104
MS.gene072937.t1 AT1G34750 33.158 190 111 5 115 298 59 238 2.84e-22 95.1
MS.gene072937.t1 AT2G34740 32.227 211 116 8 95 298 115 305 1.40e-21 94.7
MS.gene072937.t1 AT2G34740 32.227 211 116 8 95 298 97 287 1.40e-21 94.4
MS.gene072937.t1 AT4G27800 26.962 293 158 8 81 332 58 335 2.23e-21 94.4
MS.gene072937.t1 AT4G27800 27.915 283 147 9 81 321 58 325 6.49e-21 92.8
MS.gene072937.t1 AT2G40860 30.736 231 124 8 75 289 385 595 8.67e-21 94.7
MS.gene072937.t1 AT4G08260 30.672 238 126 8 112 347 10 210 1.10e-20 89.7
MS.gene072937.t1 AT5G59220 37.158 183 93 6 90 255 119 296 3.32e-19 87.4
MS.gene072937.t1 AT5G02760 31.356 236 114 11 120 318 71 295 5.10e-19 88.2
MS.gene072937.t1 AT3G12620 28.622 283 141 13 117 343 78 355 1.16e-17 84.3
MS.gene072937.t1 AT3G12620 28.622 283 141 13 117 343 78 355 1.16e-17 84.3
MS.gene072937.t1 AT2G20050 28.625 269 130 9 121 343 143 395 8.71e-17 82.8
MS.gene072937.t1 AT2G20050 28.625 269 130 9 121 343 143 395 8.96e-17 82.8
MS.gene072937.t1 AT5G01700 27.957 279 144 11 119 351 27 294 2.50e-16 79.7
MS.gene072937.t1 AT3G16800 31.092 238 118 10 107 309 83 309 4.80e-16 79.0
MS.gene072937.t1 AT3G16800 31.092 238 118 10 107 309 83 309 4.80e-16 79.0
MS.gene072937.t1 AT3G16800 31.092 238 118 10 107 309 83 309 4.80e-16 79.0
MS.gene072937.t1 AT5G01700 27.957 279 144 11 119 351 76 343 6.69e-16 79.0
MS.gene072937.t1 AT1G47380 29.104 268 144 10 116 356 57 305 6.77e-16 79.3
MS.gene072937.t1 AT3G16800 37.415 147 67 5 182 309 74 214 6.91e-16 77.4
MS.gene072937.t1 AT3G16800 37.415 147 67 5 182 309 74 214 6.91e-16 77.4
MS.gene072937.t1 AT3G55050 26.712 292 153 13 111 346 73 359 6.96e-16 79.0
MS.gene072937.t1 AT3G55050 26.712 292 153 13 111 346 73 359 6.96e-16 79.0
MS.gene072937.t1 AT4G33920 24.912 285 155 11 119 347 59 340 1.34e-15 78.2
MS.gene072937.t1 AT3G05640 26.646 319 165 14 81 346 48 350 1.79e-15 77.4
MS.gene072937.t1 AT3G05640 26.646 319 165 14 81 346 48 350 1.79e-15 77.4
MS.gene072937.t1 AT3G05640 26.646 319 165 14 81 346 48 350 1.79e-15 77.4
MS.gene072937.t1 AT4G32950 27.459 244 140 8 102 314 45 282 2.04e-15 77.0
MS.gene072937.t1 AT5G57050 30.412 194 104 8 90 257 120 308 5.51e-15 75.5
MS.gene072937.t1 AT1G09160 29.528 254 134 10 116 343 61 295 9.90e-15 75.9
MS.gene072937.t1 AT1G09160 29.528 254 134 10 116 343 61 295 9.90e-15 75.9
MS.gene072937.t1 AT3G17090 28.629 248 132 9 120 330 83 322 9.95e-15 75.5
MS.gene072937.t1 AT4G38520 25.260 289 159 11 111 345 70 355 1.05e-14 75.5
MS.gene072937.t1 AT4G38520 25.260 289 159 11 111 345 70 355 1.05e-14 75.5
MS.gene072937.t1 AT3G63320 28.832 274 117 12 150 356 52 314 1.19e-14 75.1
MS.gene072937.t1 AT3G17090 28.512 242 128 9 120 324 83 316 1.42e-14 74.3
MS.gene072937.t1 AT3G51370 24.735 283 152 11 117 343 74 351 1.86e-14 74.7
MS.gene072937.t1 AT3G51370 24.735 283 152 11 117 343 74 351 1.86e-14 74.7
MS.gene072937.t1 AT5G27930 27.027 259 124 11 121 331 92 333 2.58e-14 73.9
MS.gene072937.t1 AT5G27930 27.027 259 124 11 121 331 92 333 2.58e-14 73.9
MS.gene072937.t1 AT3G63320 27.003 337 133 14 123 356 71 397 2.75e-14 74.3
MS.gene072937.t1 AT1G22280 34.483 145 84 3 95 239 47 180 2.97e-13 68.6
MS.gene072937.t1 AT5G26010 29.224 219 110 9 123 307 75 282 4.92e-13 69.7
MS.gene072937.t1 AT5G66080 26.502 283 147 11 117 343 77 354 5.83e-13 70.1
MS.gene072937.t1 AT1G79630 31.551 187 95 7 182 345 111 287 9.03e-13 69.7
MS.gene072937.t1 AT1G79630 31.551 187 95 7 182 345 111 287 9.03e-13 69.7
MS.gene072937.t1 AT1G79630 31.551 187 95 7 182 345 111 287 9.03e-13 69.7
MS.gene072937.t1 AT1G79630 31.551 187 95 7 182 345 111 287 9.03e-13 69.7
MS.gene072937.t1 AT1G79630 31.579 190 97 7 182 348 151 330 9.36e-13 69.7
MS.gene072937.t1 AT1G79630 31.579 190 97 7 182 348 151 330 9.36e-13 69.7
MS.gene072937.t1 AT1G72770 31.401 207 99 8 90 255 197 401 1.22e-12 69.3
MS.gene072937.t1 AT1G72770 31.401 207 99 8 90 255 197 401 1.22e-12 69.3
MS.gene072937.t1 AT1G16220 30.601 183 99 7 147 308 161 336 1.34e-12 69.3
MS.gene072937.t1 AT1G79630 31.551 187 95 7 182 345 217 393 1.43e-12 69.3
MS.gene072937.t1 AT1G79630 31.551 187 95 7 182 345 221 397 1.52e-12 69.3
MS.gene072937.t1 AT5G19280 28.163 245 149 10 122 345 339 577 2.30e-12 68.9
MS.gene072937.t1 AT5G06750 26.295 251 139 10 119 330 80 323 2.67e-12 68.2
MS.gene072937.t1 AT5G06750 26.295 251 139 10 119 330 80 323 2.67e-12 68.2
MS.gene072937.t1 AT3G02750 34.507 142 69 5 182 305 215 350 3.69e-12 68.2
MS.gene072937.t1 AT3G02750 34.507 142 69 5 182 305 215 350 3.69e-12 68.2
MS.gene072937.t1 AT4G32950 28.000 225 125 8 102 295 45 263 5.18e-12 66.2
MS.gene072937.t1 AT3G16560 28.049 164 94 5 180 319 273 436 2.21e-11 65.5
MS.gene072937.t1 AT3G16560 28.049 164 94 5 180 319 273 436 2.32e-11 65.5
MS.gene072937.t1 AT3G16560 28.049 164 94 5 180 319 273 436 2.32e-11 65.5
MS.gene072937.t1 AT3G16560 28.049 164 94 5 180 319 273 436 2.32e-11 65.5

Find 96 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGCAAAATCTACAGCATTT+TGG 0.230172 3.4:+93763789 None:intergenic
GCAGCAGCCTCCACCGAATT+TGG 0.237367 3.4:-93763654 MS.gene072937:CDS
TCATAGGCTGTGATGGGATT+TGG 0.239926 3.4:-93763826 MS.gene072937:CDS
GCATTGGCTACTCTTGTTAT+AGG 0.258949 3.4:-93764444 MS.gene072937:CDS
CTTAATGTTGCTCGAGCTAT+TGG 0.303340 3.4:-93763950 MS.gene072937:CDS
GATGGGCCAAGTGCTTTCTA+TGG 0.323951 3.4:-93765175 MS.gene072937:CDS
GCAATAGATGGATTAGGATT+TGG 0.325019 3.4:+93765994 None:intergenic
TATCGGGTTCCGGTCAAATA+TGG 0.330817 3.4:-93765257 MS.gene072937:CDS
AGTTTCTGACTGTAGGTTGC+TGG 0.335395 3.4:-93764125 MS.gene072937:intron
TCCGGAGGATGTGCTGATAT+CGG 0.336894 3.4:-93765274 MS.gene072937:CDS
GGGCTCAACAAACATATAGA+TGG 0.357359 3.4:-93765193 MS.gene072937:CDS
CATAGGCTGTGATGGGATTT+GGG 0.362692 3.4:-93763825 MS.gene072937:CDS
GAGCGTGGCGCTACCAAATT+CGG 0.397152 3.4:+93763641 None:intergenic
CATCCTCCGGAACGGAGCTT+TGG 0.398949 3.4:+93765286 None:intergenic
CTTTCATGCAACCTGGTTTG+TGG 0.400398 3.4:+93764032 None:intergenic
TTCCTTCCAAAGCTCCGTTC+CGG 0.404057 3.4:-93765292 MS.gene072937:CDS
CTCTGCTCTTTCATGCAACC+TGG 0.407237 3.4:+93764025 None:intergenic
GTCTACGATGGATATCTTAA+CGG 0.416027 3.4:-93763977 MS.gene072937:CDS
GCAGAAGCAATAGATGGATT+AGG 0.417848 3.4:+93765988 None:intergenic
CTTCTCTGCTGAAGGTTTGA+AGG 0.419618 3.4:-93763603 MS.gene072937:CDS
TGGCTTGGTCAGGTGTTTGA+TGG 0.427279 3.4:-93764642 MS.gene072937:intron
AGCTGTGTGTAGTAAGGATT+TGG 0.430194 3.4:-93763738 MS.gene072937:CDS
CGAAAAGCAGAAGCAATAGA+TGG 0.432400 3.4:+93765982 None:intergenic
CAGAGGCGTATTGAGGCATC+TGG 0.433389 3.4:-93764007 MS.gene072937:CDS
TGACTGTAGGTTGCTGGTGG+TGG 0.438915 3.4:-93764119 MS.gene072937:intron
CCGGAGGATGTGCTGATATC+GGG 0.442854 3.4:-93765273 MS.gene072937:CDS
CTCAATGCTGCCCTTGCATC+CGG 0.452615 3.4:-93764474 MS.gene072937:CDS
TTGCTGGTGGTGGCAAATGC+TGG 0.454788 3.4:-93764109 MS.gene072937:CDS
ATGCAGTGGTGCCGGATGCA+AGG 0.459353 3.4:+93764463 None:intergenic
GCAAACAGACTATGCATTTG+CGG 0.463349 3.4:-93764508 MS.gene072937:CDS
TGCATCCGGCACCACTGCAT+TGG 0.476188 3.4:-93764460 MS.gene072937:CDS
CGACCCAGCTGTGTGTAGTA+AGG 0.481076 3.4:-93763744 MS.gene072937:CDS
TGCAGTGGTGCCGGATGCAA+GGG 0.482277 3.4:+93764464 None:intergenic
CTATATGTTTGTTGAGCCCA+TGG 0.493320 3.4:+93765197 None:intergenic
AAATCCTTACTACACACAGC+TGG 0.494506 3.4:+93763740 None:intergenic
GATGTGCTGATATCGGGTTC+CGG 0.494574 3.4:-93765267 MS.gene072937:CDS
CCCGATATCAGCACATCCTC+CGG 0.497125 3.4:+93765273 None:intergenic
TTATCCTCGAGAATGAACTT+TGG 0.503539 3.4:+93764576 None:intergenic
AGTAGCCAATGCAGTGGTGC+CGG 0.504279 3.4:+93764455 None:intergenic
ACTATCCTTTCAATATCCAC+TGG 0.504474 3.4:+93764546 None:intergenic
TCTACGATGGATATCTTAAC+GGG 0.504610 3.4:-93763976 MS.gene072937:CDS
ATGGGCCAAGTGCTTTCTAT+GGG 0.507014 3.4:-93765174 MS.gene072937:CDS
CACAGGAGCTTCTCTGCTGA+AGG 0.507072 3.4:-93763611 MS.gene072937:CDS
TTTCTCATCATAGGCTGTGA+TGG 0.509830 3.4:-93763833 MS.gene072937:CDS
TTCTCATCATAGGCTGTGAT+GGG 0.519805 3.4:-93763832 MS.gene072937:CDS
TGCATAGTCTGTTTGCAGAA+AGG 0.536620 3.4:+93764515 None:intergenic
ATAGATGGATTAGGATTTGG+AGG 0.539565 3.4:+93765997 None:intergenic
GGCGCTACCAAATTCGGTGG+AGG 0.547224 3.4:+93763647 None:intergenic
ATTTCCCAGTGGATATTGAA+AGG 0.550709 3.4:-93764551 MS.gene072937:CDS
AGACAATTTAGCTGCTGTTG+TGG 0.555071 3.4:-93763687 MS.gene072937:CDS
CTTCCAAAGCTCCGTTCCGG+AGG 0.555450 3.4:-93765289 MS.gene072937:CDS
TGGCTACTCTTGTTATAGGA+AGG 0.559140 3.4:-93764440 MS.gene072937:intron
CTCCTGTGCACTCTGGAGCG+TGG 0.561216 3.4:+93763626 None:intergenic
CTATCCTTTCAATATCCACT+GGG 0.563023 3.4:+93764547 None:intergenic
GAAAGAGCAGAGGCGTATTG+AGG 0.564348 3.4:-93764014 MS.gene072937:CDS
GGCTCAACAAACATATAGAT+GGG 0.564529 3.4:-93765192 MS.gene072937:CDS
ATGTCAAGAGACCACAAACC+AGG 0.564828 3.4:-93764043 MS.gene072937:CDS
AGAGAAGCTCCTGTGCACTC+TGG 0.567952 3.4:+93763619 None:intergenic
CGCCACGCTCCAGAGTGCAC+AGG 0.568670 3.4:-93763628 MS.gene072937:CDS
TGGCACATGGAAGGAATGAA+AGG 0.568858 3.4:-93763923 MS.gene072937:CDS
GGTCAGGTGTTTGATGGACA+CGG 0.571598 3.4:-93764636 MS.gene072937:intron
TTTCTGCATGGTAAAACAAG+AGG 0.572653 3.4:+93765940 None:intergenic
ATTGGTGACTGGCACATGGA+AGG 0.574252 3.4:-93763932 MS.gene072937:CDS
CTCCGGAACGGAGCTTTGGA+AGG 0.575225 3.4:+93765290 None:intergenic
TTCTGACTGTAGGTTGCTGG+TGG 0.579507 3.4:-93764122 MS.gene072937:intron
TTGCTCGAGCTATTGGTGAC+TGG 0.582496 3.4:-93763943 MS.gene072937:CDS
GAGGACGAATTTCTCATCAT+AGG 0.583587 3.4:-93763842 MS.gene072937:CDS
ACACATCCTCCATATTTGAC+CGG 0.585526 3.4:+93765248 None:intergenic
TTTGCCAAAGTTCATTCTCG+AGG 0.590449 3.4:-93764580 MS.gene072937:CDS
AGCTATTGGTGACTGGCACA+TGG 0.600561 3.4:-93763936 MS.gene072937:CDS
GATACCCCATAGAAAGCACT+TGG 0.603170 3.4:+93765169 None:intergenic
TAGTAAGGATTTGGTTGACG+AGG 0.609723 3.4:-93763729 MS.gene072937:CDS
AATCCTTACTACACACAGCT+GGG 0.610272 3.4:+93763741 None:intergenic
GAAGGAATGAAAGGCAAAGA+CGG 0.610967 3.4:-93763914 MS.gene072937:CDS
GCTTTGGAAGGAAATCAGAC+TGG 0.619255 3.4:+93765302 None:intergenic
AGGCGTATTGAGGCATCTGG+AGG 0.620598 3.4:-93764004 MS.gene072937:CDS
CGGGTTCCGGTCAAATATGG+AGG 0.621074 3.4:-93765254 MS.gene072937:CDS
CGAGCAGTGTTGTGCCGTCG+TGG 0.624108 3.4:-93764079 MS.gene072937:CDS
AGTTCAGGCTCTGCACTGAG+TGG 0.625933 3.4:+93763887 None:intergenic
CGTGGCGCTACCAAATTCGG+TGG 0.636710 3.4:+93763644 None:intergenic
TATGATGAGAAATTCGTCCT+CGG 0.637476 3.4:+93763844 None:intergenic
GGTGTGAATTGTTTCAGTGA+AGG 0.642841 3.4:-93766042 MS.gene072937:CDS
TCTGCTGAGGATGTTACTGA+AGG 0.643853 3.4:-93765328 MS.gene072937:CDS
GTTGTCTGATGTATCTGCTG+AGG 0.644724 3.4:-93765341 MS.gene072937:CDS
TATCAGCACATCCTCCGGAA+CGG 0.646071 3.4:+93765278 None:intergenic
GACTACAAAACTCACTGCCG+AGG 0.646136 3.4:-93763861 MS.gene072937:CDS
TCTGGAGGGTCTGTCTACGA+TGG 0.652044 3.4:-93763989 MS.gene072937:CDS
GGCGTATTGAGGCATCTGGA+GGG 0.653537 3.4:-93764003 MS.gene072937:CDS
CAGGTTGCATGAAAGAGCAG+AGG 0.671998 3.4:-93764024 MS.gene072937:CDS
AACAAGAGTAGCCAATGCAG+TGG 0.673761 3.4:+93764449 None:intergenic
GGAATGAAAGGCAAAGACGG+TGG 0.681718 3.4:-93763911 MS.gene072937:CDS
ATAGTCTGTTTGCAGAAAGG+CGG 0.688045 3.4:+93764518 None:intergenic
TGGGCCAAGTGCTTTCTATG+GGG 0.700270 3.4:-93765173 MS.gene072937:intron
GGTTTCTTACAAGAGAAGCG+TGG 0.710252 3.4:+93765905 None:intergenic
CGAGGATAAAGATTTCCCAG+TGG 0.737162 3.4:-93764562 MS.gene072937:CDS
CAGGTGTTTGATGGACACGG+CGG 0.806389 3.4:-93764633 MS.gene072937:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATATTCAATAATTT+GGG - chr3.4:93765213-93765232 MS.gene072937:CDS 10.0%
!! ATTTAATGTAGATAAAATCT+AGG - chr3.4:93763957-93763976 MS.gene072937:CDS 15.0%
!!! ACAAAAAATTATCATACTTT+TGG + chr3.4:93765269-93765288 None:intergenic 15.0%
!!! GATTTTGATATTCAATAATT+TGG - chr3.4:93765212-93765231 MS.gene072937:CDS 15.0%
!! AAAGAACATCAATAAAATGA+AGG + chr3.4:93764221-93764240 None:intergenic 20.0%
!! AAGTAACGTTATATTTCAAA+TGG - chr3.4:93764963-93764982 MS.gene072937:intron 20.0%
!! ATTGATTATTGATGTTAGTA+GGG - chr3.4:93764152-93764171 MS.gene072937:intron 20.0%
!! CAAAAGAAAAAACAAAAGAT+CGG + chr3.4:93763744-93763763 None:intergenic 20.0%
!! TGCTAATTTAAAGAAAACAA+AGG + chr3.4:93765246-93765265 None:intergenic 20.0%
!!! ATTTTATTGATGTTCTTTCA+TGG - chr3.4:93764223-93764242 MS.gene072937:intron 20.0%
! AAAAAGACAAAACAAACGAA+AGG + chr3.4:93764714-93764733 None:intergenic 25.0%
! AACATCAATAATCAATCCTA+AGG + chr3.4:93764148-93764167 None:intergenic 25.0%
! AGAGAAATGTGAAATAATGA+TGG - chr3.4:93764010-93764029 MS.gene072937:CDS 25.0%
! GATTGATTATTGATGTTAGT+AGG - chr3.4:93764151-93764170 MS.gene072937:intron 25.0%
! TAATATGTGTTTATGCACAT+TGG + chr3.4:93764846-93764865 None:intergenic 25.0%
! TTTCATGGAAAAATCTTTCA+TGG - chr3.4:93764238-93764257 MS.gene072937:intron 25.0%
!! TGCTAATCTTCTTTTGTAAT+TGG - chr3.4:93764797-93764816 MS.gene072937:intron 25.0%
!!! TAGTTGTTGATTATGTTTTG+TGG - chr3.4:93764109-93764128 MS.gene072937:CDS 25.0%
!!! TGATGTTACTTTTCTTGTTT+TGG - chr3.4:93763797-93763816 MS.gene072937:CDS 25.0%
AAAAACTCCATAGCTAGTAA+AGG + chr3.4:93764875-93764894 None:intergenic 30.0%
AAATGTGAAATAATGATGGC+GGG - chr3.4:93764014-93764033 MS.gene072937:CDS 30.0%
AACAAACGAAAGGAGAATAA+CGG + chr3.4:93764704-93764723 None:intergenic 30.0%
AACAACCATCATATCAGTAA+AGG + chr3.4:93764618-93764637 None:intergenic 30.0%
AATTGGTATTGCTTTACCTT+TGG - chr3.4:93764814-93764833 MS.gene072937:intron 30.0%
ACGTTATATTTCAAATGGCT+TGG - chr3.4:93764968-93764987 MS.gene072937:intron 30.0%
AGAGCATGAAAATGGAAATA+TGG + chr3.4:93765368-93765387 None:intergenic 30.0%
CATAAATCTGATTGAGGTTT+GGG - chr3.4:93765314-93765333 MS.gene072937:CDS 30.0%
GAAATGTGAAATAATGATGG+CGG - chr3.4:93764013-93764032 MS.gene072937:CDS 30.0%
GAGCATGAAAATGGAAATAT+GGG + chr3.4:93765367-93765386 None:intergenic 30.0%
GTGACAAATGGAAAGAAAAA+AGG + chr3.4:93763895-93763914 None:intergenic 30.0%
TGATATGATGGTTGTTAGAA+TGG - chr3.4:93764622-93764641 MS.gene072937:CDS 30.0%
! AAAGGAGAATAACGGAATAA+CGG + chr3.4:93764696-93764715 None:intergenic 30.0%
! AAATCTAGGACTAGAATAGA+AGG - chr3.4:93763971-93763990 MS.gene072937:CDS 30.0%
!! ATGTTTGTGTTGACAGTTTT+AGG - chr3.4:93764400-93764419 MS.gene072937:intron 30.0%
!!! AATTTTTTGTCCGCATGTTT+TGG - chr3.4:93765279-93765298 MS.gene072937:CDS 30.0%
ACTATCCTTTCAATATCCAC+TGG + chr3.4:93765082-93765101 None:intergenic 35.0%
ATTTCCCAGTGGATATTGAA+AGG - chr3.4:93765074-93765093 MS.gene072937:intron 35.0%
CACTACATGAAAGTGACAAA+TGG + chr3.4:93763907-93763926 None:intergenic 35.0%
CTATCCTTTCAATATCCACT+GGG + chr3.4:93765081-93765100 None:intergenic 35.0%
GCATAAATCTGATTGAGGTT+TGG - chr3.4:93765313-93765332 MS.gene072937:CDS 35.0%
GGCTCAACAAACATATAGAT+GGG - chr3.4:93764433-93764452 MS.gene072937:intron 35.0%
GTCTACGATGGATATCTTAA+CGG - chr3.4:93765648-93765667 MS.gene072937:intron 35.0%
TATGATGAGAAATTCGTCCT+CGG + chr3.4:93765784-93765803 None:intergenic 35.0%
TCTACGATGGATATCTTAAC+GGG - chr3.4:93765649-93765668 MS.gene072937:intron 35.0%
TGATTGTAGTTTCTGACTGT+AGG - chr3.4:93765493-93765512 MS.gene072937:intron 35.0%
TGTATTTGATGTCATGTCAG+AGG + chr3.4:93765392-93765411 None:intergenic 35.0%
TTATCCTCGAGAATGAACTT+TGG + chr3.4:93765052-93765071 None:intergenic 35.0%
TTGTGCCTTTACTGATATGA+TGG - chr3.4:93764610-93764629 MS.gene072937:CDS 35.0%
TTTCGTACTTCCAAAACATG+CGG + chr3.4:93765292-93765311 None:intergenic 35.0%
TTTCTGCATGGTAAAACAAG+AGG + chr3.4:93763688-93763707 None:intergenic 35.0%
! AAAAATCAAGATAAGCGCTG+AGG + chr3.4:93764579-93764598 None:intergenic 35.0%
! AAAATGCTGTAGATTTTGCG+CGG - chr3.4:93765838-93765857 MS.gene072937:intron 35.0%
! GAAAGGCATAAATCTGATTG+AGG - chr3.4:93765308-93765327 MS.gene072937:CDS 35.0%
! GTTTTTACAGCTGACAAGAA+TGG - chr3.4:93764889-93764908 MS.gene072937:intron 35.0%
! TTTTGGTCTGCTACAAAAGT+TGG - chr3.4:93765341-93765360 MS.gene072937:CDS 35.0%
!! AAAATCAAGATAAGCGCTGA+GGG + chr3.4:93764578-93764597 None:intergenic 35.0%
!! AGTTTTGTAGTCATGAGTTC+AGG + chr3.4:93765756-93765775 None:intergenic 35.0%
!! ATAGATGGATTAGGATTTGG+AGG + chr3.4:93763631-93763650 None:intergenic 35.0%
!! ATATTTCAAATGGCTTGGTC+AGG - chr3.4:93764973-93764992 MS.gene072937:intron 35.0%
!! ATTGAGGTTTGGGATCTTTT+TGG - chr3.4:93765324-93765343 MS.gene072937:CDS 35.0%
!! GCAATAGATGGATTAGGATT+TGG + chr3.4:93763634-93763653 None:intergenic 35.0%
AAATCCTTACTACACACAGC+TGG + chr3.4:93765888-93765907 None:intergenic 40.0%
AATCCTTACTACACACAGCT+GGG + chr3.4:93765887-93765906 None:intergenic 40.0%
ACACATCCTCCATATTTGAC+CGG + chr3.4:93764380-93764399 None:intergenic 40.0%
AGACAATTTAGCTGCTGTTG+TGG - chr3.4:93765938-93765957 MS.gene072937:CDS 40.0%
AGATGCACCTTTACTAGCTA+TGG - chr3.4:93764865-93764884 MS.gene072937:intron 40.0%
AGCTGTGTGTAGTAAGGATT+TGG - chr3.4:93765887-93765906 MS.gene072937:intron 40.0%
ATAGTCTGTTTGCAGAAAGG+CGG + chr3.4:93765110-93765129 None:intergenic 40.0%
CGAAAAGCAGAAGCAATAGA+TGG + chr3.4:93763646-93763665 None:intergenic 40.0%
CTTAATGTTGCTCGAGCTAT+TGG - chr3.4:93765675-93765694 MS.gene072937:intron 40.0%
GAAGGAATGAAAGGCAAAGA+CGG - chr3.4:93765711-93765730 MS.gene072937:intron 40.0%
GAGGACGAATTTCTCATCAT+AGG - chr3.4:93765783-93765802 MS.gene072937:intron 40.0%
GCAAACAGACTATGCATTTG+CGG - chr3.4:93765117-93765136 MS.gene072937:intron 40.0%
GGGCTCAACAAACATATAGA+TGG - chr3.4:93764432-93764451 MS.gene072937:intron 40.0%
GGTGTGAATTGTTTCAGTGA+AGG - chr3.4:93763583-93763602 MS.gene072937:CDS 40.0%
GTATTGCTTTACCTTTGGTG+TGG - chr3.4:93764819-93764838 MS.gene072937:intron 40.0%
TAACGGAATAACGGCATATG+AGG + chr3.4:93764687-93764706 None:intergenic 40.0%
TACAGCTGACAAGAATGGAT+AGG - chr3.4:93764894-93764913 MS.gene072937:intron 40.0%
TGCATAGTCTGTTTGCAGAA+AGG + chr3.4:93765113-93765132 None:intergenic 40.0%
TGGATTCAGTTTGCAACCTT+AGG - chr3.4:93764129-93764148 MS.gene072937:intron 40.0%
TTCTCATCATAGGCTGTGAT+GGG - chr3.4:93765793-93765812 MS.gene072937:intron 40.0%
TTTCTCATCATAGGCTGTGA+TGG - chr3.4:93765792-93765811 MS.gene072937:intron 40.0%
TTTGCCAAAGTTCATTCTCG+AGG - chr3.4:93765045-93765064 MS.gene072937:intron 40.0%
! ACTCTTGTTATAGGAAGGTC+AGG - chr3.4:93765190-93765209 MS.gene072937:CDS 40.0%
! CGAACAAGAGATTTTCTGCA+TGG + chr3.4:93763700-93763719 None:intergenic 40.0%
! CTATATGTTTGTTGAGCCCA+TGG + chr3.4:93764431-93764450 None:intergenic 40.0%
! GAAGGAGTTGCAAAGCTTTT+TGG - chr3.4:93766040-93766059 MS.gene072937:CDS 40.0%
! GCAAAGCTTTTTGGATAGCT+TGG - chr3.4:93766049-93766068 MS.gene072937:CDS 40.0%
! GCAGAAGCAATAGATGGATT+AGG + chr3.4:93763640-93763659 None:intergenic 40.0%
! GCGCAAAATCTACAGCATTT+TGG + chr3.4:93765839-93765858 None:intergenic 40.0%
! TAGTAAGGATTTGGTTGACG+AGG - chr3.4:93765896-93765915 MS.gene072937:intron 40.0%
! TCAGAGGAAGAGCATGAAAA+TGG + chr3.4:93765376-93765395 None:intergenic 40.0%
! TGGCTACTCTTGTTATAGGA+AGG - chr3.4:93765185-93765204 MS.gene072937:CDS 40.0%
!! AAATCAAGATAAGCGCTGAG+GGG + chr3.4:93764577-93764596 None:intergenic 40.0%
!! GAGGCTTTGAAGAGAAAAAG+TGG - chr3.4:93765915-93765934 MS.gene072937:CDS 40.0%
!! GCATTGGCTACTCTTGTTAT+AGG - chr3.4:93765181-93765200 MS.gene072937:CDS 40.0%
!! TGTCAATTGCTTTTCCACGA+CGG + chr3.4:93765563-93765582 None:intergenic 40.0%
!!! GCATGTTTTGGAAGTACGAA+AGG - chr3.4:93765291-93765310 MS.gene072937:CDS 40.0%
!!! TGTGTTGACAGTTTTAGGCA+GGG - chr3.4:93764405-93764424 MS.gene072937:intron 40.0%
!!! TTGTGTTGACAGTTTTAGGC+AGG - chr3.4:93764404-93764423 MS.gene072937:intron 40.0%
AACAAGAGTAGCCAATGCAG+TGG + chr3.4:93765179-93765198 None:intergenic 45.0%
AGTTTCTGACTGTAGGTTGC+TGG - chr3.4:93765500-93765519 MS.gene072937:intron 45.0%
ATGGGCCAAGTGCTTTCTAT+GGG - chr3.4:93764451-93764470 MS.gene072937:CDS 45.0%
ATGTCAAGAGACCACAAACC+AGG - chr3.4:93765582-93765601 MS.gene072937:intron 45.0%
CGAGGATAAAGATTTCCCAG+TGG - chr3.4:93765063-93765082 MS.gene072937:intron 45.0%
CTTCTCTGCTGAAGGTTTGA+AGG - chr3.4:93766022-93766041 MS.gene072937:CDS 45.0%
GGTTTCTTACAAGAGAAGCG+TGG + chr3.4:93763723-93763742 None:intergenic 45.0%
GTTGTCTGATGTATCTGCTG+AGG - chr3.4:93764284-93764303 MS.gene072937:intron 45.0%
TATCGGGTTCCGGTCAAATA+TGG - chr3.4:93764368-93764387 MS.gene072937:intron 45.0%
TCTGCTGAGGATGTTACTGA+AGG - chr3.4:93764297-93764316 MS.gene072937:intron 45.0%
TGGCACATGGAAGGAATGAA+AGG - chr3.4:93765702-93765721 MS.gene072937:intron 45.0%
! CATAGGCTGTGATGGGATTT+GGG - chr3.4:93765800-93765819 MS.gene072937:intron 45.0%
! CTTTCATGCAACCTGGTTTG+TGG + chr3.4:93765596-93765615 None:intergenic 45.0%
! TCATAGGCTGTGATGGGATT+TGG - chr3.4:93765799-93765818 MS.gene072937:intron 45.0%
!! ATAATGATGGCGGGTTGGTT+TGG - chr3.4:93764023-93764042 MS.gene072937:CDS 45.0%
!! GATACCCCATAGAAAGCACT+TGG + chr3.4:93764459-93764478 None:intergenic 45.0%
!! GCTTTGGAAGGAAATCAGAC+TGG + chr3.4:93764326-93764345 None:intergenic 45.0%
!! GTGAAATAATGATGGCGGGT+TGG - chr3.4:93764018-93764037 MS.gene072937:CDS 45.0%
CAGGTTGCATGAAAGAGCAG+AGG - chr3.4:93765601-93765620 MS.gene072937:intron 50.0%
CTCTGCTCTTTCATGCAACC+TGG + chr3.4:93765603-93765622 None:intergenic 50.0%
CTGATGTTCTGCGCATCTGA+TGG - chr3.4:93764738-93764757 MS.gene072937:intron 50.0%
GACTACAAAACTCACTGCCG+AGG - chr3.4:93765764-93765783 MS.gene072937:intron 50.0%
GATGGGCCAAGTGCTTTCTA+TGG - chr3.4:93764450-93764469 MS.gene072937:CDS 50.0%
GCGCATCTGATGGCATCTTT+CGG - chr3.4:93764748-93764767 MS.gene072937:intron 50.0%
GGAATGAAAGGCAAAGACGG+TGG - chr3.4:93765714-93765733 MS.gene072937:intron 50.0%
GTTTGGTCAGATTGGGGAAG+TGG - chr3.4:93764040-93764059 MS.gene072937:CDS 50.0%
TATCAGCACATCCTCCGGAA+CGG + chr3.4:93764350-93764369 None:intergenic 50.0%
TGCACATTGGTCCACACCAA+AGG + chr3.4:93764833-93764852 None:intergenic 50.0%
TGGGCCAAGTGCTTTCTATG+GGG - chr3.4:93764452-93764471 MS.gene072937:CDS 50.0%
TTCCTTCCAAAGCTCCGTTC+CGG - chr3.4:93764333-93764352 MS.gene072937:intron 50.0%
TTCTGACTGTAGGTTGCTGG+TGG - chr3.4:93765503-93765522 MS.gene072937:intron 50.0%
! AGCTATTGGTGACTGGCACA+TGG - chr3.4:93765689-93765708 MS.gene072937:intron 50.0%
! ATTGGTGACTGGCACATGGA+AGG - chr3.4:93765693-93765712 MS.gene072937:intron 50.0%
! GAAAGAGCAGAGGCGTATTG+AGG - chr3.4:93765611-93765630 MS.gene072937:intron 50.0%
! GATGTGCTGATATCGGGTTC+CGG - chr3.4:93764358-93764377 MS.gene072937:intron 50.0%
! GGTCAGGTGTTTGATGGACA+CGG - chr3.4:93764989-93765008 MS.gene072937:intron 50.0%
! TCCGGAGGATGTGCTGATAT+CGG - chr3.4:93764351-93764370 MS.gene072937:intron 50.0%
! TTGCTCGAGCTATTGGTGAC+TGG - chr3.4:93765682-93765701 MS.gene072937:intron 50.0%
!! CGGGTTGGTTTGGTCAGATT+GGG - chr3.4:93764033-93764052 MS.gene072937:CDS 50.0%
!! GGGTTGGTTTGGTCAGATTG+GGG - chr3.4:93764034-93764053 MS.gene072937:CDS 50.0%
!! TGGCTTGGTCAGGTGTTTGA+TGG - chr3.4:93764983-93765002 MS.gene072937:intron 50.0%
!!! ACAGTTTTAGGCAGGGCCAT+GGG - chr3.4:93764412-93764431 MS.gene072937:intron 50.0%
AGAGAAGCTCCTGTGCACTC+TGG + chr3.4:93766009-93766028 None:intergenic 55.0%
AGTAGCCAATGCAGTGGTGC+CGG + chr3.4:93765173-93765192 None:intergenic 55.0%
AGTTCAGGCTCTGCACTGAG+TGG + chr3.4:93765741-93765760 None:intergenic 55.0%
CACAGGAGCTTCTCTGCTGA+AGG - chr3.4:93766014-93766033 MS.gene072937:CDS 55.0%
CCCGATATCAGCACATCCTC+CGG + chr3.4:93764355-93764374 None:intergenic 55.0%
CGACCCAGCTGTGTGTAGTA+AGG - chr3.4:93765881-93765900 MS.gene072937:intron 55.0%
CGGGTTCCGGTCAAATATGG+AGG - chr3.4:93764371-93764390 MS.gene072937:intron 55.0%
CTCAATGCTGCCCTTGCATC+CGG - chr3.4:93765151-93765170 MS.gene072937:intron 55.0%
GAGCGTGGCGCTACCAAATT+CGG + chr3.4:93765987-93766006 None:intergenic 55.0%
TCTGGAGGGTCTGTCTACGA+TGG - chr3.4:93765636-93765655 MS.gene072937:intron 55.0%
TGACTGTAGGTTGCTGGTGG+TGG - chr3.4:93765506-93765525 MS.gene072937:intron 55.0%
! AGGCGTATTGAGGCATCTGG+AGG - chr3.4:93765621-93765640 MS.gene072937:intron 55.0%
! CAGAGGCGTATTGAGGCATC+TGG - chr3.4:93765618-93765637 MS.gene072937:intron 55.0%
! CAGGTGTTTGATGGACACGG+CGG - chr3.4:93764992-93765011 MS.gene072937:intron 55.0%
! CCGGAGGATGTGCTGATATC+GGG - chr3.4:93764352-93764371 MS.gene072937:intron 55.0%
! GGCGTATTGAGGCATCTGGA+GGG - chr3.4:93765622-93765641 MS.gene072937:intron 55.0%
!! ATAAGCGCTGAGGGGAGAGA+GGG + chr3.4:93764569-93764588 None:intergenic 55.0%
!! GCGGGTTGGTTTGGTCAGAT+TGG - chr3.4:93764032-93764051 MS.gene072937:CDS 55.0%
!! TTGCTGGTGGTGGCAAATGC+TGG - chr3.4:93765516-93765535 MS.gene072937:intron 55.0%
!!! GACAGTTTTAGGCAGGGCCA+TGG - chr3.4:93764411-93764430 MS.gene072937:intron 55.0%
CATCCTCCGGAACGGAGCTT+TGG + chr3.4:93764342-93764361 None:intergenic 60.0%
CGTGGCGCTACCAAATTCGG+TGG + chr3.4:93765984-93766003 None:intergenic 60.0%
CTTCCAAAGCTCCGTTCCGG+AGG - chr3.4:93764336-93764355 MS.gene072937:intron 60.0%
GCAGCAGCCTCCACCGAATT+TGG - chr3.4:93765971-93765990 MS.gene072937:CDS 60.0%
TGCATCCGGCACCACTGCAT+TGG - chr3.4:93765165-93765184 MS.gene072937:intron 60.0%
! ATGCAGTGGTGCCGGATGCA+AGG + chr3.4:93765165-93765184 None:intergenic 60.0%
! CTGTAGATTTTGCGCGGCGC+AGG - chr3.4:93765844-93765863 MS.gene072937:intron 60.0%
! GGCGCTACCAAATTCGGTGG+AGG + chr3.4:93765981-93766000 None:intergenic 60.0%
! TGCAGTGGTGCCGGATGCAA+GGG + chr3.4:93765164-93765183 None:intergenic 60.0%
!! CTCCGGAACGGAGCTTTGGA+AGG + chr3.4:93764338-93764357 None:intergenic 60.0%
!! GATAAGCGCTGAGGGGAGAG+AGG + chr3.4:93764570-93764589 None:intergenic 60.0%
CGAGCAGTGTTGTGCCGTCG+TGG - chr3.4:93765546-93765565 MS.gene072937:intron 65.0%
TGAGGGGAGAGAGGGAGGGA+GGG + chr3.4:93764561-93764580 None:intergenic 65.0%
! TTTTGCGCGGCGCAGGCTTC+AGG - chr3.4:93765851-93765870 MS.gene072937:intron 65.0%
!! CTCCTGTGCACTCTGGAGCG+TGG + chr3.4:93766002-93766021 None:intergenic 65.0%
CGCCACGCTCCAGAGTGCAC+AGG - chr3.4:93765997-93766016 MS.gene072937:CDS 70.0%
CTGAGGGGAGAGAGGGAGGG+AGG + chr3.4:93764562-93764581 None:intergenic 70.0%
GCGCTGAGGGGAGAGAGGGA+GGG + chr3.4:93764565-93764584 None:intergenic 70.0%
! AGCGCTGAGGGGAGAGAGGG+AGG + chr3.4:93764566-93764585 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 93763568 93766079 93763568 ID=MS.gene072937
chr3.4 mRNA 93763568 93766079 93763568 ID=MS.gene072937.t1;Parent=MS.gene072937
chr3.4 exon 93765915 93766079 93765915 ID=MS.gene072937.t1.exon1;Parent=MS.gene072937.t1
chr3.4 CDS 93765915 93766079 93765915 ID=cds.MS.gene072937.t1;Parent=MS.gene072937.t1
chr3.4 exon 93765174 93765377 93765174 ID=MS.gene072937.t1.exon2;Parent=MS.gene072937.t1
chr3.4 CDS 93765174 93765377 93765174 ID=cds.MS.gene072937.t1;Parent=MS.gene072937.t1
chr3.4 exon 93764441 93764652 93764441 ID=MS.gene072937.t1.exon3;Parent=MS.gene072937.t1
chr3.4 CDS 93764441 93764652 93764441 ID=cds.MS.gene072937.t1;Parent=MS.gene072937.t1
chr3.4 exon 93763568 93764132 93763568 ID=MS.gene072937.t1.exon4;Parent=MS.gene072937.t1
chr3.4 CDS 93763568 93764132 93763568 ID=cds.MS.gene072937.t1;Parent=MS.gene072937.t1
Gene Sequence

>MS.gene072937

ATGGAAGAAATTGAAGGTGTGAATTGTTTCAGTGAAGGTAGAAGCTCTAGTGAGAGTCGACCTCCAAATCCTAATCCATCTATTGCTTCTGCTTTTCGTCAATGTCAACGCAATGATCCTCTTGTTTTACCATGCAGAAAATCTCTTGTTCGCCACGCTTCTCTTGTAAGAAACCGATCTTTTGTTTTTTCTTTTGTTTTATAGTGTCTTGTGTTTTTCATTGTGATAATGATGTTACTTTTCTTGTTTTGGAACAGTTATTACAGCATTTATTACTTTTCTTAAAATGATTCTTATCTTCATTTCTACGTTTTTAGCTTCATTCCTTTTTTCTTTCCATTTGTCACTTTCATGTAGTGAGAATGTGTCATTTAAGCTTTAGTTTTTGTATTTAATGTAGATAAAATCTAGGACTAGAATAGAAGGAAATTTTTGTTGAGAAAGAGAAATGTGAAATAATGATGGCGGGTTGGTTTGGTCAGATTGGGGAAGTGGAAAATTAGATGACAACAACATTATGATTTATTCATCTCATTATGATTAGTTGTTGATTATGTTTTGTGGATTCAGTTTGCAACCTTAGGATTGATTATTGATGTTAGTAGGGTTATTTCTGCACTGAAAAAATTTCATCTTTCTACAATTTTTTTCCTTCATTTTATTGATGTTCTTTCATGGAAAAATCTTTCATGGAACAATCAGCAGACGAAAATGAAGTTGTCTGATGTATCTGCTGAGGATGTTACTGAAGGTTGCCAGTCTGATTTCCTTCCAAAGCTCCGTTCCGGAGGATGTGCTGATATCGGGTTCCGGTCAAATATGGAGGATGTGTATGTTTGTGTTGACAGTTTTAGGCAGGGCCATGGGCTCAACAAACATATAGATGGGCCAAGTGCTTTCTATGGGGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCTCTCCCCTCAGCGCTTATCTTGATTTTTGTCTTCATGATTTGTGCCTTTACTGATATGATGGTTGTTAGAATGGATTTTCATTTTTTCTTAATGATTTTTTATTCGTTGACATCCTCATATGCCGTTATTCCGTTATTCTCCTTTCGTTTGTTTTGTCTTTTTCATTCTGATGTTCTGCGCATCTGATGGCATCTTTCGGAAGTTCTTTGCAAATCATAGTTCACATGCTAATCTTCTTTTGTAATTGGTATTGCTTTACCTTTGGTGTGGACCAATGTGCATAAACACATATTAGATGCACCTTTACTAGCTATGGAGTTTTTACAGCTGACAAGAATGGATAGGTTTATTTATGTTGCTTGCATTTGTTTTTAAACTGCTTAGAAAAGTCAAGTAACGTTATATTTCAAATGGCTTGGTCAGGTGTTTGATGGACACGGCGGAAAGCATGCTGCTGACTTTGCTTGCAATCATTTGCCAAAGTTCATTCTCGAGGATAAAGATTTCCCAGTGGATATTGAAAGGATAGTTGCTTCCGCCTTTCTGCAAACAGACTATGCATTTGCGGAAGCTTGTTCTCTCAATGCTGCCCTTGCATCCGGCACCACTGCATTGGCTACTCTTGTTATAGGAAGGTCAGGATTTTGATATTCAATAATTTGGGCATACATCCTTTGTTTTCTTTAAATTAGCACCAAAAGTATGATAATTTTTTGTCCGCATGTTTTGGAAGTACGAAAGGCATAAATCTGATTGAGGTTTGGGATCTTTTTGGTCTGCTACAAAAGTTGGCCCATATTTCCATTTTCATGCTCTTCCTCTGACATGACATCAAATACATACATACATACATACATACATACATACATACATACATACATACATACATACATACATGTGATAATGTGATAAGTTGCATGCTGATTGTAGTTTCTGACTGTAGGTTGCTGGTGGTGGCAAATGCTGGAGATTGTCGAGCAGTGTTGTGCCGTCGTGGAAAAGCAATTGACATGTCAAGAGACCACAAACCAGGTTGCATGAAAGAGCAGAGGCGTATTGAGGCATCTGGAGGGTCTGTCTACGATGGATATCTTAACGGGCAACTTAATGTTGCTCGAGCTATTGGTGACTGGCACATGGAAGGAATGAAAGGCAAAGACGGTGGACCACTCAGTGCAGAGCCTGAACTCATGACTACAAAACTCACTGCCGAGGACGAATTTCTCATCATAGGCTGTGATGGGATTTGGGATGTTTTTAGAAGCCAAAATGCTGTAGATTTTGCGCGGCGCAGGCTTCAGGAGCATAACGACCCAGCTGTGTGTAGTAAGGATTTGGTTGACGAGGCTTTGAAGAGAAAAAGTGGAGACAATTTAGCTGCTGTTGTGGTTTGCTTTCAGCAGCAGCCTCCACCGAATTTGGTAGCGCCACGCTCCAGAGTGCACAGGAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTTTTGGATAGCTTGGCAAAATGA
Protein sequence

>MS.gene072937.t1

MEEIEGVNCFSEGRSSSESRPPNPNPSIASAFRQCQRNDPLVLPCRKSLVRHASLQTKMKLSDVSAEDVTEGCQSDFLPKLRSGGCADIGFRSNMEDVYVCVDSFRQGHGLNKHIDGPSAFYGVFDGHGGKHAADFACNHLPKFILEDKDFPVDIERIVASAFLQTDYAFAEACSLNAALASGTTALATLVIGRLLVVANAGDCRAVLCRRGKAIDMSRDHKPGCMKEQRRIEASGGSVYDGYLNGQLNVARAIGDWHMEGMKGKDGGPLSAEPELMTTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPAVCSKDLVDEALKRKSGDNLAAVVVCFQQQPPPNLVAPRSRVHRSFSAEGLKELQSFLDSLAK