AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005480.t1 MTR_1g086350 98.462 390 6 0 1 390 1 390 0.0 788
MS.gene005480.t1 MTR_1g086350 94.359 390 6 1 1 390 1 374 0.0 748
MS.gene005480.t1 MTR_1g086350 99.267 273 2 0 118 390 16 288 0.0 560
MS.gene005480.t1 MTR_2g033000 56.848 387 148 3 1 387 1 368 2.69e-153 437
MS.gene005480.t1 MTR_4g123080 55.641 390 161 4 1 387 1 381 3.23e-152 435
MS.gene005480.t1 MTR_4g123080 55.128 390 145 5 1 387 1 363 1.36e-150 430
MS.gene005480.t1 MTR_5g024340 50.629 318 135 3 73 386 79 378 2.00e-109 326
MS.gene005480.t1 MTR_4g116420 47.904 334 146 6 62 385 68 383 1.29e-99 301
MS.gene005480.t1 MTR_3g107880 46.588 337 155 6 56 385 1 319 2.67e-94 285
MS.gene005480.t1 MTR_3g107880 47.230 343 154 8 50 385 55 377 1.51e-93 285
MS.gene005480.t1 MTR_3g107880 46.588 337 155 6 56 385 58 376 2.11e-93 285
MS.gene005480.t1 MTR_4g123080 66.250 160 53 1 228 387 110 268 9.31e-70 221
MS.gene005480.t1 MTR_4g123080 37.815 119 63 3 1 116 1 111 1.50e-14 73.6
MS.gene005480.t1 MTR_1g014640 34.058 276 148 8 87 357 85 331 5.88e-43 153
MS.gene005480.t1 MTR_1g013400 34.058 276 148 8 87 357 85 331 5.88e-43 153
MS.gene005480.t1 MTR_3g105730 33.216 283 154 9 87 364 20 272 1.38e-41 147
MS.gene005480.t1 MTR_3g105730 33.216 283 154 9 87 364 42 294 1.99e-41 148
MS.gene005480.t1 MTR_5g063940 34.583 240 129 6 114 347 15 232 1.71e-36 133
MS.gene005480.t1 MTR_5g063940 34.583 240 129 6 114 347 62 279 3.69e-36 133
MS.gene005480.t1 MTR_3g074610 35.833 240 126 7 114 347 62 279 4.74e-36 133
MS.gene005480.t1 MTR_2g008850 35.021 237 126 6 117 347 18 232 9.89e-36 131
MS.gene005480.t1 MTR_1g115570 35.470 234 125 8 117 347 125 335 1.12e-35 134
MS.gene005480.t1 MTR_1g014190 31.288 326 150 10 77 347 21 327 1.28e-35 134
MS.gene005480.t1 MTR_1g014190 31.288 326 150 10 77 347 59 365 2.88e-35 134
MS.gene005480.t1 MTR_2g008850 34.694 245 131 7 109 347 57 278 4.09e-35 130
MS.gene005480.t1 MTR_3g105880 30.796 289 131 6 78 316 22 291 6.23e-35 132
MS.gene005480.t1 MTR_3g105880 30.796 289 131 6 78 316 22 291 1.08e-34 130
MS.gene005480.t1 MTR_4g094208 35.021 237 126 7 117 347 60 274 1.19e-34 129
MS.gene005480.t1 MTR_4g007440 29.700 367 170 11 59 363 10 350 1.63e-34 131
MS.gene005480.t1 MTR_1g050520 30.347 346 186 12 32 356 340 651 8.58e-34 133
MS.gene005480.t1 MTR_5g071550 31.868 273 155 8 83 349 127 374 1.01e-33 129
MS.gene005480.t1 MTR_3g464650 31.273 275 154 8 83 349 67 314 3.58e-32 124
MS.gene005480.t1 MTR_3g491830 30.547 311 169 8 76 353 57 353 3.63e-32 125
MS.gene005480.t1 MTR_3g464700 33.761 234 124 6 83 311 91 298 7.37e-32 123
MS.gene005480.t1 MTR_6g081850 31.271 291 166 9 78 349 43 318 8.96e-32 122
MS.gene005480.t1 MTR_1g015110 32.394 284 146 10 113 368 285 550 3.80e-31 124
MS.gene005480.t1 MTR_1g028300 31.564 358 201 13 10 349 48 379 4.92e-31 122
MS.gene005480.t1 MTR_5g071550 32.653 245 133 8 83 320 127 346 2.56e-30 119
MS.gene005480.t1 MTR_4g125810 30.508 295 164 10 86 352 225 506 3.11e-30 122
MS.gene005480.t1 MTR_2g078760 33.054 239 132 9 117 349 37 253 2.74e-29 114
MS.gene005480.t1 MTR_2g078760 33.054 239 132 9 117 349 116 332 1.01e-28 114
MS.gene005480.t1 MTR_3g091060 30.159 252 147 8 118 364 125 352 2.67e-28 114
MS.gene005480.t1 MTR_8g463130 31.646 237 134 9 117 347 37 251 7.51e-28 110
MS.gene005480.t1 MTR_8g463130 31.646 237 134 9 117 347 65 279 9.92e-28 110
MS.gene005480.t1 MTR_2g040500 33.482 224 115 7 118 314 267 483 5.13e-27 112
MS.gene005480.t1 MTR_5g009370 33.065 248 141 8 81 319 54 285 5.80e-27 110
MS.gene005480.t1 MTR_3g068200 29.866 298 148 9 87 347 100 373 5.97e-27 110
MS.gene005480.t1 MTR_3g104710 31.298 262 146 8 118 351 286 541 2.37e-26 110
MS.gene005480.t1 MTR_4g094542 32.068 237 132 9 117 347 149 362 2.60e-25 105
MS.gene005480.t1 MTR_5g080680 28.682 258 144 6 77 317 99 333 5.82e-23 99.8
MS.gene005480.t1 MTR_2g435550 33.086 269 138 11 120 352 80 342 1.42e-22 97.8
MS.gene005480.t1 MTR_2g435550 33.086 269 138 11 120 352 94 356 1.57e-22 98.2
MS.gene005480.t1 MTR_2g078760 33.854 192 103 7 117 302 116 289 1.70e-22 96.7
MS.gene005480.t1 MTR_8g102550 29.153 295 177 7 81 351 104 390 3.33e-22 97.8
MS.gene005480.t1 MTR_3g105730 35.625 160 82 5 87 244 42 182 3.78e-22 94.4
MS.gene005480.t1 MTR_2g435550 32.971 276 140 12 120 356 94 363 7.17e-22 96.7
MS.gene005480.t1 MTR_6g087000 28.146 302 142 12 118 364 124 405 1.14e-19 91.7
MS.gene005480.t1 MTR_6g087000 28.146 302 142 12 118 364 124 405 1.29e-19 91.7
MS.gene005480.t1 MTR_4g118340 29.167 288 131 10 118 357 86 348 2.80e-19 89.0
MS.gene005480.t1 MTR_4g120410 27.174 276 159 8 118 357 91 360 3.15e-19 88.6
MS.gene005480.t1 MTR_1g110210 30.293 307 173 15 76 366 32 313 3.90e-19 87.8
MS.gene005480.t1 MTR_1g106855 29.316 307 139 11 112 357 54 343 3.97e-19 88.6
MS.gene005480.t1 MTR_7g090550 27.347 245 123 7 114 317 66 296 5.13e-19 88.6
MS.gene005480.t1 MTR_5g071550 35.443 158 83 5 87 244 131 269 2.17e-18 85.1
MS.gene005480.t1 MTR_7g090530 28.992 238 120 10 118 317 69 295 2.45e-18 86.7
MS.gene005480.t1 MTR_1g106855 30.800 250 115 8 112 317 54 289 4.38e-18 84.3
MS.gene005480.t1 MTR_1g067210 28.782 271 133 11 103 335 67 315 6.87e-18 84.7
MS.gene005480.t1 MTR_3g032700 28.512 242 116 9 118 317 68 294 1.23e-17 84.3
MS.gene005480.t1 MTR_5g005810 29.699 266 151 11 110 353 324 575 2.42e-17 84.3
MS.gene005480.t1 MTR_1g016620 30.263 228 121 9 117 312 67 288 2.51e-17 82.8
MS.gene005480.t1 MTR_0015s0140 26.493 268 136 9 108 334 69 316 2.73e-17 83.2
MS.gene005480.t1 MTR_1g019760 29.213 267 150 12 117 366 64 308 3.44e-17 83.2
MS.gene005480.t1 MTR_3g032660 27.869 244 119 9 116 317 66 294 3.88e-17 83.2
MS.gene005480.t1 MTR_1g019760 29.213 267 150 12 117 366 64 308 4.70e-17 82.8
MS.gene005480.t1 MTR_7g100240 26.518 313 166 13 103 361 57 359 7.41e-17 81.6
MS.gene005480.t1 MTR_2g033910 27.559 254 135 9 118 335 75 315 8.17e-17 81.6
MS.gene005480.t1 MTR_2g090190 30.417 240 116 11 118 312 90 323 1.08e-16 82.0
MS.gene005480.t1 MTR_7g070510 29.119 261 133 9 118 335 92 343 4.44e-16 79.7
MS.gene005480.t1 MTR_1g116260 26.552 290 144 10 118 351 80 356 8.45e-16 78.6
MS.gene005480.t1 MTR_7g112430 28.464 267 157 11 117 367 67 315 1.46e-15 78.2
MS.gene005480.t1 MTR_2g020970 25.714 280 145 9 118 354 87 346 2.46e-15 77.0
MS.gene005480.t1 MTR_4g113480 26.441 295 152 12 109 350 65 347 2.83e-15 77.8
MS.gene005480.t1 MTR_1g112840 25.087 287 154 10 117 351 80 357 3.08e-15 77.0
MS.gene005480.t1 MTR_1g083690 29.437 231 118 11 118 312 89 310 3.55e-15 76.6
MS.gene005480.t1 MTR_5g080680 28.218 202 111 5 77 261 99 283 5.85e-15 75.1
MS.gene005480.t1 MTR_7g112490 26.277 274 152 10 80 312 57 321 5.97e-15 76.3
MS.gene005480.t1 MTR_7g112490 27.542 236 125 9 118 312 109 339 7.22e-15 75.9
MS.gene005480.t1 MTR_7g021530 28.740 254 123 10 116 317 36 283 9.65e-15 75.5
MS.gene005480.t1 MTR_7g080170 28.516 256 119 9 116 312 94 344 9.81e-15 75.9
MS.gene005480.t1 MTR_8g017240 30.165 242 132 9 118 333 86 316 1.60e-14 74.7
MS.gene005480.t1 MTR_7g080170 31.034 174 96 5 158 312 68 236 1.68e-14 74.7
MS.gene005480.t1 MTR_7g021530 28.740 254 123 10 116 317 86 333 1.82e-14 74.7
MS.gene005480.t1 MTR_2g078760 35.659 129 70 5 117 244 116 232 2.09e-14 73.2
MS.gene005480.t1 MTR_7g021530 28.740 254 123 10 116 317 127 374 2.52e-14 74.7
MS.gene005480.t1 MTR_8g074930 25.874 286 151 9 118 351 79 355 3.31e-14 73.9
MS.gene005480.t1 MTR_4g037470 28.030 264 134 11 118 335 96 349 6.42e-14 73.6
MS.gene005480.t1 MTR_4g094208 36.641 131 70 4 117 246 60 178 7.82e-14 70.5
MS.gene005480.t1 MTR_4g037470 28.030 264 134 11 118 335 105 358 7.92e-14 73.2
MS.gene005480.t1 MTR_7g060770 26.908 249 149 8 118 334 263 510 1.44e-13 72.4
MS.gene005480.t1 MTR_4g013295 25.828 302 170 11 55 318 24 309 1.44e-13 71.6
MS.gene005480.t1 MTR_3g101540 27.016 248 145 11 117 347 65 293 1.53e-13 72.0
MS.gene005480.t1 MTR_7g081020 26.000 250 145 8 117 335 75 315 1.58e-13 72.0
MS.gene005480.t1 MTR_3g101540 27.016 248 145 11 117 347 65 293 1.63e-13 72.0
MS.gene005480.t1 MTR_7g081020 25.431 232 138 7 117 317 75 302 7.83e-13 69.3
MS.gene005480.t1 MTR_4g076560 25.397 252 146 8 118 334 202 446 1.17e-12 69.7
MS.gene005480.t1 MTR_3g032590 27.320 194 100 6 162 317 110 300 2.81e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005480.t1 AT3G62260 61.480 392 136 8 1 386 1 383 8.84e-167 472
MS.gene005480.t1 AT3G62260 61.480 392 137 8 1 386 1 384 1.86e-166 471
MS.gene005480.t1 AT3G62260 68.581 296 90 2 92 386 1 294 1.46e-150 427
MS.gene005480.t1 AT1G48040 58.376 394 138 11 1 386 7 382 2.68e-145 417
MS.gene005480.t1 AT3G17250 55.495 364 142 10 34 386 68 422 4.41e-130 380
MS.gene005480.t1 AT2G33700 53.292 319 126 3 73 386 78 378 1.54e-116 344
MS.gene005480.t1 AT3G51470 49.527 317 129 5 74 384 23 314 6.55e-105 312
MS.gene005480.t1 AT3G51470 49.206 315 133 4 74 384 67 358 2.37e-104 312
MS.gene005480.t1 AT2G25620 46.087 345 157 7 53 386 63 389 3.63e-95 290
MS.gene005480.t1 AT2G25620 46.087 345 157 7 53 386 63 389 3.63e-95 290
MS.gene005480.t1 AT5G10740 35.294 272 142 8 81 347 35 277 4.26e-44 156
MS.gene005480.t1 AT5G10740 35.294 272 142 8 81 347 35 277 4.26e-44 156
MS.gene005480.t1 AT4G31750 34.962 266 139 8 87 347 41 277 4.44e-43 152
MS.gene005480.t1 AT4G31750 34.962 266 139 8 87 347 41 277 4.44e-43 152
MS.gene005480.t1 AT4G31750 34.962 266 139 8 87 347 41 277 4.72e-43 152
MS.gene005480.t1 AT5G24940 34.191 272 145 8 81 347 35 277 3.00e-42 154
MS.gene005480.t1 AT2G25070 30.267 337 161 6 78 359 22 339 1.84e-40 147
MS.gene005480.t1 AT2G25070 30.267 337 161 6 78 359 22 339 1.84e-40 147
MS.gene005480.t1 AT1G07160 33.574 277 154 7 83 352 126 379 1.18e-37 140
MS.gene005480.t1 AT1G43900 33.704 270 136 10 87 347 131 366 1.84e-37 139
MS.gene005480.t1 AT1G78200 34.601 263 138 8 99 347 38 280 1.42e-36 134
MS.gene005480.t1 AT1G78200 34.601 263 138 8 99 347 38 280 1.42e-36 134
MS.gene005480.t1 AT1G78200 34.601 263 138 8 99 347 38 280 1.42e-36 134
MS.gene005480.t1 AT1G78200 34.661 251 136 8 105 347 5 235 2.17e-36 133
MS.gene005480.t1 AT1G78200 34.661 251 136 8 105 347 5 235 2.17e-36 133
MS.gene005480.t1 AT1G22280 33.333 237 136 6 117 347 64 284 5.47e-36 133
MS.gene005480.t1 AT4G31860 28.909 339 167 6 78 361 22 341 9.66e-36 134
MS.gene005480.t1 AT1G67820 32.143 252 143 6 87 334 92 319 1.07e-34 132
MS.gene005480.t1 AT2G30020 32.963 270 150 8 87 349 147 392 1.32e-34 132
MS.gene005480.t1 AT1G67820 32.143 252 143 6 87 334 128 355 2.94e-34 132
MS.gene005480.t1 AT4G31860 30.450 289 132 5 78 316 22 291 2.97e-34 129
MS.gene005480.t1 AT2G20630 32.218 239 134 9 117 349 62 278 9.06e-34 127
MS.gene005480.t1 AT1G22280 32.489 237 132 6 117 347 64 278 9.08e-34 127
MS.gene005480.t1 AT2G40180 32.558 301 176 9 58 352 109 388 1.64e-33 129
MS.gene005480.t1 AT2G20630 32.068 237 133 9 117 347 62 276 2.82e-33 125
MS.gene005480.t1 AT5G53140 32.051 234 135 6 118 347 132 345 3.75e-33 129
MS.gene005480.t1 AT5G53140 32.051 234 135 6 118 347 132 345 3.75e-33 129
MS.gene005480.t1 AT1G34750 32.636 239 133 6 117 349 65 281 6.54e-33 125
MS.gene005480.t1 AT1G34750 32.636 239 133 6 117 349 65 281 6.54e-33 125
MS.gene005480.t1 AT1G34750 32.636 239 133 6 117 349 65 281 6.54e-33 125
MS.gene005480.t1 AT4G26080 29.700 367 207 13 35 359 75 432 2.19e-32 127
MS.gene005480.t1 AT2G40860 30.368 326 182 10 47 356 359 655 4.57e-32 128
MS.gene005480.t1 AT2G40860 30.368 326 182 10 47 356 261 557 4.90e-32 127
MS.gene005480.t1 AT4G28400 32.068 237 133 9 117 347 44 258 2.37e-31 120
MS.gene005480.t1 AT4G28400 32.068 237 133 9 117 347 66 280 4.13e-31 120
MS.gene005480.t1 AT2G29380 31.250 304 160 10 75 347 73 358 1.34e-29 117
MS.gene005480.t1 AT4G31860 29.670 273 123 5 78 300 22 275 3.36e-29 114
MS.gene005480.t1 AT1G18030 30.208 288 165 9 85 352 80 351 5.04e-29 116
MS.gene005480.t1 AT1G07430 29.181 281 163 7 49 318 105 360 6.45e-29 117
MS.gene005480.t1 AT5G57050 32.569 218 135 5 102 314 104 314 1.43e-28 115
MS.gene005480.t1 AT3G15260 30.380 237 137 7 117 347 72 286 1.87e-28 113
MS.gene005480.t1 AT3G15260 30.380 237 137 7 117 347 72 286 1.87e-28 113
MS.gene005480.t1 AT5G57050 32.569 218 135 5 102 314 144 354 2.03e-28 115
MS.gene005480.t1 AT2G40860 30.363 303 166 10 47 333 359 632 2.22e-28 117
MS.gene005480.t1 AT4G27800 31.515 330 171 11 72 366 52 361 2.35e-28 115
MS.gene005480.t1 AT5G51760 31.008 258 147 6 81 317 80 327 8.61e-27 110
MS.gene005480.t1 AT5G51760 31.008 258 147 6 81 317 110 357 1.14e-26 110
MS.gene005480.t1 AT3G11410 31.538 260 147 6 75 317 102 347 3.55e-26 108
MS.gene005480.t1 AT4G27800 31.650 297 154 9 72 334 52 333 2.23e-25 105
MS.gene005480.t1 AT4G27800 31.818 286 146 9 72 323 52 322 1.54e-24 103
MS.gene005480.t1 AT4G28400 33.333 192 104 7 117 302 66 239 4.15e-24 100
MS.gene005480.t1 AT1G17550 26.552 290 167 7 102 351 220 503 7.06e-24 103
MS.gene005480.t1 AT1G17550 26.552 290 167 7 102 351 220 503 7.06e-24 103
MS.gene005480.t1 AT1G72770 29.304 273 147 8 118 351 238 503 7.26e-24 103
MS.gene005480.t1 AT1G72770 29.304 273 147 8 118 351 238 503 7.26e-24 103
MS.gene005480.t1 AT1G72770 29.304 273 147 8 118 351 238 503 7.26e-24 103
MS.gene005480.t1 AT5G59220 30.195 308 173 11 32 317 60 347 1.02e-23 102
MS.gene005480.t1 AT1G18030 30.380 237 130 8 85 302 80 300 1.38e-23 100
MS.gene005480.t1 AT2G20050 29.856 278 132 10 118 352 143 400 4.01e-23 102
MS.gene005480.t1 AT2G20050 29.856 278 132 10 118 352 143 400 4.01e-23 102
MS.gene005480.t1 AT1G34750 31.771 192 107 5 117 302 65 238 2.95e-22 95.1
MS.gene005480.t1 AT3G06270 28.058 278 137 8 118 352 88 345 4.85e-22 96.7
MS.gene005480.t1 AT2G34740 26.667 240 146 10 117 349 118 334 2.17e-20 91.7
MS.gene005480.t1 AT1G68410 29.154 319 182 13 62 365 29 318 7.54e-20 91.3
MS.gene005480.t1 AT1G68410 29.154 319 182 13 62 365 29 318 7.54e-20 91.3
MS.gene005480.t1 AT1G68410 29.154 319 182 13 62 365 29 318 7.54e-20 91.3
MS.gene005480.t1 AT1G68410 29.154 319 182 13 62 365 29 318 7.54e-20 91.3
MS.gene005480.t1 AT2G40860 30.418 263 141 9 47 293 359 595 4.66e-19 89.4
MS.gene005480.t1 AT5G02760 28.322 286 142 12 117 350 71 345 7.31e-19 87.8
MS.gene005480.t1 AT3G16800 30.894 246 135 8 117 336 92 328 8.51e-19 87.4
MS.gene005480.t1 AT3G16800 30.894 246 135 8 117 336 92 328 8.51e-19 87.4
MS.gene005480.t1 AT3G16800 30.894 246 135 8 117 336 92 328 8.51e-19 87.4
MS.gene005480.t1 AT4G08260 30.508 236 116 9 117 349 18 208 1.60e-18 84.0
MS.gene005480.t1 AT3G17090 28.287 251 138 8 117 335 83 323 1.83e-18 86.7
MS.gene005480.t1 AT3G17090 28.448 232 131 6 117 317 83 310 2.95e-18 85.1
MS.gene005480.t1 AT1G09160 30.189 265 147 12 116 361 64 309 3.46e-18 86.3
MS.gene005480.t1 AT1G09160 30.189 265 147 12 116 361 64 309 3.46e-18 86.3
MS.gene005480.t1 AT3G16800 33.862 189 96 6 168 336 54 233 8.37e-18 82.8
MS.gene005480.t1 AT3G16800 33.862 189 96 6 168 336 54 233 8.37e-18 82.8
MS.gene005480.t1 AT5G19280 29.572 257 154 10 109 347 328 575 1.09e-17 85.1
MS.gene005480.t1 AT5G26010 28.782 271 153 8 66 312 29 283 1.59e-17 83.2
MS.gene005480.t1 AT5G57050 31.333 150 97 3 118 262 160 308 1.70e-17 82.8
MS.gene005480.t1 AT2G34740 28.922 204 118 10 117 312 132 316 1.93e-17 82.8
MS.gene005480.t1 AT2G34740 28.922 204 118 10 117 312 114 298 2.11e-17 82.4
MS.gene005480.t1 AT5G27930 29.762 252 133 10 118 335 92 333 3.09e-17 82.8
MS.gene005480.t1 AT5G27930 29.762 252 133 10 118 335 92 333 3.09e-17 82.8
MS.gene005480.t1 AT5G06750 26.996 263 149 7 108 336 72 325 3.83e-17 82.8
MS.gene005480.t1 AT5G06750 26.996 263 149 7 108 336 72 325 3.83e-17 82.8
MS.gene005480.t1 AT3G12620 27.063 303 146 13 108 351 73 359 1.44e-16 80.9
MS.gene005480.t1 AT3G12620 27.063 303 146 13 108 351 73 359 1.44e-16 80.9
MS.gene005480.t1 AT3G05640 29.134 254 142 10 110 335 85 328 2.23e-16 80.1
MS.gene005480.t1 AT3G05640 29.134 254 142 10 110 335 85 328 2.23e-16 80.1
MS.gene005480.t1 AT3G05640 29.134 254 142 10 110 335 85 328 2.23e-16 80.1
MS.gene005480.t1 AT5G19280 28.839 267 153 11 109 347 328 585 3.58e-16 80.5
MS.gene005480.t1 AT4G03415 30.165 242 118 11 117 312 96 332 7.39e-16 79.3
MS.gene005480.t1 AT4G03415 30.165 242 118 11 117 312 96 332 7.39e-16 79.3
MS.gene005480.t1 AT4G03415 30.165 242 118 11 117 312 96 332 7.39e-16 79.3
MS.gene005480.t1 AT1G16220 29.778 225 127 8 150 349 156 374 1.31e-15 78.6
MS.gene005480.t1 AT3G51370 25.168 298 161 11 117 362 78 365 1.57e-15 77.8
MS.gene005480.t1 AT3G51370 25.168 298 161 11 117 362 78 365 1.57e-15 77.8
MS.gene005480.t1 AT4G32950 26.199 271 161 10 117 364 71 325 1.71e-15 77.4
MS.gene005480.t1 AT5G36250 26.154 325 152 11 116 361 96 411 1.85e-15 78.2
MS.gene005480.t1 AT3G27140 27.615 239 105 6 114 349 15 188 3.76e-15 75.1
MS.gene005480.t1 AT3G02750 33.889 180 95 8 152 312 179 353 5.06e-15 77.0
MS.gene005480.t1 AT3G02750 33.889 180 95 8 152 312 179 353 5.06e-15 77.0
MS.gene005480.t1 AT3G55050 24.510 306 150 9 116 359 82 368 1.59e-14 74.7
MS.gene005480.t1 AT3G55050 24.510 306 150 9 116 359 82 368 1.59e-14 74.7
MS.gene005480.t1 AT1G22280 35.556 135 66 4 117 246 64 182 1.59e-14 72.4
MS.gene005480.t1 AT4G38520 25.392 319 171 9 82 347 49 353 2.66e-14 74.3
MS.gene005480.t1 AT4G38520 25.392 319 171 9 82 347 49 353 2.66e-14 74.3
MS.gene005480.t1 AT1G03590 27.536 276 137 11 83 312 64 322 4.27e-14 73.9
MS.gene005480.t1 AT5G59220 29.084 251 142 10 32 260 60 296 5.87e-14 72.4
MS.gene005480.t1 AT1G79630 31.720 186 95 6 187 349 111 287 9.64e-14 72.4
MS.gene005480.t1 AT1G79630 31.720 186 95 6 187 349 111 287 9.64e-14 72.4
MS.gene005480.t1 AT1G79630 31.720 186 95 6 187 349 111 287 9.64e-14 72.4
MS.gene005480.t1 AT1G79630 31.720 186 95 6 187 349 111 287 9.64e-14 72.4
MS.gene005480.t1 AT1G72770 31.515 165 90 5 118 260 238 401 1.09e-13 72.4
MS.gene005480.t1 AT1G72770 31.515 165 90 5 118 260 238 401 1.09e-13 72.4
MS.gene005480.t1 AT1G79630 31.720 186 95 6 187 349 151 327 1.15e-13 72.4
MS.gene005480.t1 AT1G79630 31.720 186 95 6 187 349 151 327 1.15e-13 72.4
MS.gene005480.t1 AT5G01700 27.556 225 128 7 118 312 29 248 1.34e-13 71.6
MS.gene005480.t1 AT1G79630 31.720 186 95 6 187 349 217 393 1.46e-13 72.4
MS.gene005480.t1 AT1G79630 31.720 186 95 6 187 349 221 397 1.57e-13 72.4
MS.gene005480.t1 AT5G01700 27.556 225 128 7 118 312 78 297 2.09e-13 71.6
MS.gene005480.t1 AT5G66080 25.896 251 144 9 117 335 81 321 3.63e-13 70.9
MS.gene005480.t1 AT5G36250 25.074 339 152 12 116 361 96 425 2.17e-12 68.6
MS.gene005480.t1 AT4G32950 29.064 203 114 8 117 299 71 263 7.60e-11 62.8
MS.gene005480.t1 AT5G06750 28.415 183 90 6 188 336 68 243 7.84e-11 63.2

Find 109 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTTACTGCTTTGATATT+TGG 0.143776 1.1:-64140334 MS.gene005480:CDS
GTTGAGGATGGTTATCTTAA+TGG 0.188453 1.1:-64139806 MS.gene005480:CDS
AAATCCCTGGCGCACTTCTC+TGG 0.265688 1.1:+64139572 None:intergenic
CCATAAAAGGCACTTGGTTT+AGG 0.274695 1.1:+64140648 None:intergenic
CTTATATACGCTGCAGCTTC+AGG 0.274755 1.1:+64140523 None:intergenic
TCATAGGATGCGACGGCATC+TGG 0.286067 1.1:-64139658 MS.gene005480:CDS
CCAAAAGAAAAGCCTTTCTA+AGG 0.291213 1.1:+64140410 None:intergenic
AAAGCTCATTACCCCATAAA+AGG 0.322934 1.1:+64140635 None:intergenic
TGATTATTGCTCCCTTTATT+CGG 0.324053 1.1:+64141937 None:intergenic
TGCTTCTTTCAGGCTTCTAA+TGG 0.327203 1.1:-64139951 MS.gene005480:intron
CTCCGCTCTGATGGATAAAT+AGG 0.332580 1.1:+64139854 None:intergenic
AGATGATTTGTCATCTCATC+TGG 0.348517 1.1:-64140688 MS.gene005480:CDS
TGTTCTAAAATTCTTCTTTG+AGG 0.363877 1.1:-64140494 MS.gene005480:CDS
CTCAATTTCCGTTGGGGAGG+TGG 0.369924 1.1:+64139455 None:intergenic
GCCTCTCCTCCCTTGACCAT+GGG 0.399297 1.1:-64139493 MS.gene005480:CDS
ACATGGAAGATGAACATATA+AGG 0.401510 1.1:-64140713 MS.gene005480:CDS
TTTGTCCCCTCCATCCGTTC+CGG 0.407179 1.1:-64140765 MS.gene005480:CDS
GCGGAGGCGAGTTGAAGAAT+TGG 0.412143 1.1:-64139837 MS.gene005480:CDS
TTGTAGCTTGAGAAGCTTGT+TGG 0.428662 1.1:-64139405 MS.gene005480:CDS
ATTTAGTTATGGAGGCATTA+CGG 0.434702 1.1:-64139553 MS.gene005480:CDS
TACGAGAGCACTAGGGGATT+GGG 0.437253 1.1:-64139771 MS.gene005480:CDS
AGCAATGTGAACACTTCATC+AGG 0.438598 1.1:-64140364 MS.gene005480:CDS
GGTAGAGAATTCCCTTAGAA+AGG 0.439506 1.1:-64140422 MS.gene005480:CDS
GTGCGCCAGGGATTTAGTTA+TGG 0.439518 1.1:-64139564 MS.gene005480:CDS
ACAGCATCTCAATTTCCGTT+GGG 0.444872 1.1:+64139448 None:intergenic
GCCTTGTTCGTAAAGGTTTG+AGG 0.452873 1.1:-64139607 MS.gene005480:CDS
TTCCGTTGGGGAGGTGGAGA+TGG 0.456117 1.1:+64139461 None:intergenic
CAAATGTATCAGGTATTTGA+TGG 0.464326 1.1:-64140556 MS.gene005480:intron
TTGACATGTCTCAAGATCAT+AGG 0.464758 1.1:-64139877 MS.gene005480:CDS
GATGATGAATTCCTCATCAT+AGG 0.473463 1.1:-64139674 MS.gene005480:CDS
CGGAGGCGAGTTGAAGAATT+GGG 0.474033 1.1:-64139836 MS.gene005480:CDS
TTACGAGAGCACTAGGGGAT+TGG 0.476776 1.1:-64139772 MS.gene005480:CDS
TCAACTCGCCTCCGCTCTGA+TGG 0.480527 1.1:+64139845 None:intergenic
CTTCTAATGGTGGCAAATGC+CGG 0.483674 1.1:-64139938 MS.gene005480:CDS
TTATCAGTTACGAGAGCACT+AGG 0.490748 1.1:-64139779 MS.gene005480:CDS
CCCAATGTCGGCAAAACTAC+CGG 0.492205 1.1:+64140746 None:intergenic
TACAGCATCTCAATTTCCGT+TGG 0.495681 1.1:+64139447 None:intergenic
TGCCTCTCCTCCCTTGACCA+TGG 0.496106 1.1:-64139494 MS.gene005480:CDS
AATCCCTGGCGCACTTCTCT+GGG 0.496285 1.1:+64139573 None:intergenic
CATTGGGCCACGTAGATACA+TGG 0.506610 1.1:-64140730 MS.gene005480:CDS
ATGACCCAGAGAAGTGCGCC+AGG 0.512332 1.1:-64139577 MS.gene005480:CDS
CATAGGATGCGACGGCATCT+GGG 0.522185 1.1:-64139657 MS.gene005480:CDS
TTCTTTCAGGCTTCTAATGG+TGG 0.526946 1.1:-64139948 MS.gene005480:intron
GCTCTGACTCCCCATGGTCA+AGG 0.526959 1.1:+64139483 None:intergenic
GCTGTTAGCCTTGTTCGTAA+AGG 0.539320 1.1:-64139614 MS.gene005480:CDS
AAAACTACCGGAACGGATGG+AGG 0.545279 1.1:+64140758 None:intergenic
CTCTGACTCCCCATGGTCAA+GGG 0.545804 1.1:+64139484 None:intergenic
CGAGCAGTTCTCAGTCGTAA+AGG 0.550384 1.1:-64139908 MS.gene005480:CDS
AGAACCACTTGGCGGAACTC+AGG 0.550621 1.1:+64139704 None:intergenic
AACTACCGGAACGGATGGAG+GGG 0.553531 1.1:+64140760 None:intergenic
AAACTACCGGAACGGATGGA+GGG 0.556241 1.1:+64140759 None:intergenic
TCCTCAAACCTTTACGAACA+AGG 0.556250 1.1:+64139606 None:intergenic
TGCCTCCATAACTAAATCCC+TGG 0.558404 1.1:+64139559 None:intergenic
GGCAAAACTACCGGAACGGA+TGG 0.564330 1.1:+64140755 None:intergenic
TTACTGCTTTGATATTTGGA+AGG 0.566507 1.1:-64140330 MS.gene005480:intron
ACAGATATAACCTCGGAAGC+TGG 0.566543 1.1:-64140810 MS.gene005480:CDS
CATCCTCTGTTAGAACCACT+TGG 0.568309 1.1:+64139693 None:intergenic
CGCCAGGGATTTAGTTATGG+AGG 0.569650 1.1:-64139561 MS.gene005480:CDS
ATTACCCCATAAAAGGCACT+TGG 0.570593 1.1:+64140642 None:intergenic
GAGAACTGCTCGGCAGTCAC+CGG 0.579491 1.1:+64139919 None:intergenic
TTCCTCATCATAGGATGCGA+CGG 0.580342 1.1:-64139665 MS.gene005480:CDS
ATTGGGACATGAAGTTACCT+AGG 0.580793 1.1:-64139754 MS.gene005480:CDS
TTGGGTGGCTATGTTGAGGA+TGG 0.581725 1.1:-64139818 MS.gene005480:CDS
AACTCAGGATCTGCAATCAA+AGG 0.582421 1.1:+64139719 None:intergenic
CCTCTCCTCCCTTGACCATG+GGG 0.584021 1.1:-64139492 MS.gene005480:CDS
GAGATGGCTCTGACTCCCCA+TGG 0.585078 1.1:+64139477 None:intergenic
CAAAAGAAAAGCCTTTCTAA+GGG 0.589375 1.1:+64140411 None:intergenic
ATGCTGTAGCCTCTCTGCAG+AGG 0.592273 1.1:-64139432 MS.gene005480:CDS
ATGATCTTGAGACATGTCAA+TGG 0.593621 1.1:+64139880 None:intergenic
GGGAGCAATAATCACGAGAT+CGG 0.595829 1.1:-64141928 MS.gene005480:CDS
TATCAGTTACGAGAGCACTA+GGG 0.595983 1.1:-64139778 MS.gene005480:CDS
CCCCATGGTCAAGGGAGGAG+AGG 0.598657 1.1:+64139492 None:intergenic
AGGATCTGCAATCAAAGGTG+AGG 0.598833 1.1:+64139724 None:intergenic
ATCAGTTACGAGAGCACTAG+GGG 0.599117 1.1:-64139777 MS.gene005480:CDS
AGCTTGAGAAGCTTGTTGGA+AGG 0.599170 1.1:-64139401 MS.gene005480:CDS
GTATCTACGTGGCCCAATGT+CGG 0.599170 1.1:+64140734 None:intergenic
TATCAGGTATTTGATGGTCA+CGG 0.605355 1.1:-64140550 MS.gene005480:intron
GGATCTGCAATCAAAGGTGA+GGG 0.605483 1.1:+64139725 None:intergenic
GATGATTTGTCATCTCATCT+GGG 0.605596 1.1:-64140687 MS.gene005480:CDS
TTGTTCGTAAAGGTTTGAGG+AGG 0.607519 1.1:-64139604 MS.gene005480:CDS
CATCTCAATTTCCGTTGGGG+AGG 0.607773 1.1:+64139452 None:intergenic
AAAGGTGAGGGAGTACCCCT+AGG 0.611278 1.1:+64139737 None:intergenic
TTGGGACATGAAGTTACCTA+GGG 0.612199 1.1:-64139753 MS.gene005480:CDS
CCTCTGTTAGAACCACTTGG+CGG 0.614318 1.1:+64139696 None:intergenic
CAGCATCTCAATTTCCGTTG+GGG 0.615519 1.1:+64139449 None:intergenic
GGAAGCTGGTCTTGAATCTG+CGG 0.621302 1.1:-64140796 MS.gene005480:CDS
AGATTCAAGACCAGCTTCCG+AGG 0.622877 1.1:+64140800 None:intergenic
TGCCGTCGCATCCTATGATG+AGG 0.626062 1.1:+64139663 None:intergenic
AGCCATCTCCACCTCCCCAA+CGG 0.626897 1.1:-64139463 MS.gene005480:CDS
AGATCCTGAGTTCCGCCAAG+TGG 0.632200 1.1:-64139708 MS.gene005480:CDS
TGACTCCCCATGGTCAAGGG+AGG 0.641391 1.1:+64139487 None:intergenic
AGTTCTCAGTCGTAAAGGAG+AGG 0.648854 1.1:-64139903 MS.gene005480:CDS
TGTCGGCAAAACTACCGGAA+CGG 0.650590 1.1:+64140751 None:intergenic
CTATTTATCCATCAGAGCGG+AGG 0.652008 1.1:-64139853 MS.gene005480:CDS
CCGCCAAGTGGTTCTAACAG+AGG 0.652583 1.1:-64139696 MS.gene005480:CDS
TATCAAAGCAGTAAGAGCTG+TGG 0.655912 1.1:+64140339 None:intergenic
AGAATTGGGTGGCTATGTTG+AGG 0.660809 1.1:-64139822 MS.gene005480:CDS
TGTTGTGTGTCAACAAAGCG+TGG 0.664702 1.1:-64141974 MS.gene005480:CDS
CTTTACGACTGAGAACTGCT+CGG 0.672783 1.1:+64139909 None:intergenic
TTATCAACTTCAGATATCTG+AGG 0.677279 1.1:+64140460 None:intergenic
TGACCCAGAGAAGTGCGCCA+GGG 0.686052 1.1:-64139576 MS.gene005480:CDS
TACAAAGAGCCTCTGCAGAG+AGG 0.687122 1.1:+64139423 None:intergenic
GCAATGTGAACACTTCATCA+GGG 0.690510 1.1:-64140363 MS.gene005480:CDS
AGGCGAGTTGAAGAATTGGG+TGG 0.701087 1.1:-64139833 MS.gene005480:CDS
TAAGACTACAGATATAACCT+CGG 0.729528 1.1:-64140817 MS.gene005480:CDS
TCATCTTCCATGTATCTACG+TGG 0.732485 1.1:+64140723 None:intergenic
GGCCTATTTATCCATCAGAG+CGG 0.741189 1.1:-64139856 MS.gene005480:CDS
CAGGTATTTGATGGTCACGG+AGG 0.753703 1.1:-64140547 MS.gene005480:CDS
TGGGACATGAAGTTACCTAG+GGG 0.807393 1.1:-64139752 MS.gene005480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTAATTAATACTAATAA+TGG + chr1.1:64140213-64140232 None:intergenic 10.0%
!! AAACTAAATTATCAAAATTC+AGG + chr1.1:64139808-64139827 None:intergenic 15.0%
!! AATAAATAAACATTAGATAG+TGG + chr1.1:64141114-64141133 None:intergenic 15.0%
!! AATAGAAAGAAAAACAAATT+TGG - chr1.1:64139723-64139742 MS.gene005480:CDS 15.0%
!!! TTTATTTTGTACATTTGTAA+TGG - chr1.1:64141128-64141147 MS.gene005480:intron 15.0%
!!! TTTTTATTTAGCTTAGAAAT+TGG - chr1.1:64139832-64139851 MS.gene005480:CDS 15.0%
!! GGATCATATAATACTAATAA+TGG + chr1.1:64140139-64140158 None:intergenic 20.0%
!! GGATCATCATAAAAATAAAT+TGG + chr1.1:64139878-64139897 None:intergenic 20.0%
!!! AAAACAAATTTGGAAACTTT+TGG - chr1.1:64139733-64139752 MS.gene005480:CDS 20.0%
!!! AATTCTTTGACTTCTATTTT+GGG - chr1.1:64139683-64139702 MS.gene005480:CDS 20.0%
!!! CCAAAAAAAATTTAGAACAA+GGG - chr1.1:64139896-64139915 MS.gene005480:CDS 20.0%
!!! TCCAAAAAAAATTTAGAACA+AGG - chr1.1:64139895-64139914 MS.gene005480:CDS 20.0%
!!! TGATAATGTATTTTTACAAG+AGG - chr1.1:64140936-64140955 MS.gene005480:intron 20.0%
!!! TGATTTGCATTTAATTATTC+TGG - chr1.1:64140529-64140548 MS.gene005480:CDS 20.0%
! AAACAGAAGAAATTCTCAAA+AGG + chr1.1:64139568-64139587 None:intergenic 25.0%
! AACAGAAGAAATTCTCAAAA+GGG + chr1.1:64139567-64139586 None:intergenic 25.0%
! AAGTCAGTTAAACAAACAAA+GGG + chr1.1:64141402-64141421 None:intergenic 25.0%
! ATTTATACAATCAACACACA+CGG + chr1.1:64140338-64140357 None:intergenic 25.0%
! GTAGAAGAATAAAAAAACTC+TGG - chr1.1:64141344-64141363 MS.gene005480:intron 25.0%
! TAAACATGTTTCATTAGACA+TGG - chr1.1:64141265-64141284 MS.gene005480:intron 25.0%
! TATAATGTATGGGTACTATT+AGG - chr1.1:64141152-64141171 MS.gene005480:intron 25.0%
! TTGTAAATCTAATTGAGCTT+CGG - chr1.1:64140800-64140819 MS.gene005480:CDS 25.0%
! TTGTAATGGCTATAATGTAT+GGG - chr1.1:64141142-64141161 MS.gene005480:intron 25.0%
! TTTGTAATGGCTATAATGTA+TGG - chr1.1:64141141-64141160 MS.gene005480:intron 25.0%
!! TTGAGAATTTCTTCTGTTTT+TGG - chr1.1:64139569-64139588 MS.gene005480:CDS 25.0%
!! TTTTCTTTTCATATCTCATG+TGG - chr1.1:64140373-64140392 MS.gene005480:CDS 25.0%
!! TTTTTATTCTTCTACCTAGA+GGG + chr1.1:64141339-64141358 None:intergenic 25.0%
!!! CCCTTGTTCTAAATTTTTTT+TGG + chr1.1:64139899-64139918 None:intergenic 25.0%
!!! GAATTCTTTGACTTCTATTT+TGG - chr1.1:64139682-64139701 MS.gene005480:CDS 25.0%
!!! TGAAGTATTTTCCGAATAAA+GGG - chr1.1:64139431-64139450 MS.gene005480:CDS 25.0%
!!! TGATTTTGATTGATCTTAGA+AGG - chr1.1:64139777-64139796 MS.gene005480:CDS 25.0%
!!! TGTTCTAAAATTCTTCTTTG+AGG - chr1.1:64140885-64140904 MS.gene005480:intron 25.0%
!!! TTTTGGTGATTTTGTTTTGT+TGG - chr1.1:64139586-64139605 MS.gene005480:CDS 25.0%
!!! TTTTTTATTCTTCTACCTAG+AGG + chr1.1:64141340-64141359 None:intergenic 25.0%
ACATGGAAGATGAACATATA+AGG - chr1.1:64140666-64140685 MS.gene005480:CDS 30.0%
ACTTCTAATATGCTTCTTTC+AGG - chr1.1:64141418-64141437 MS.gene005480:intron 30.0%
AGAAAAACCAAGAACCTAAA+AGG + chr1.1:64141084-64141103 None:intergenic 30.0%
AGTATTAATTAAGAACCGTG+TGG - chr1.1:64140218-64140237 MS.gene005480:intron 30.0%
CAAAAGAAAAGCCTTTCTAA+GGG + chr1.1:64140971-64140990 None:intergenic 30.0%
CAAAGAAACTCAATTTCAAC+TGG + chr1.1:64139935-64139954 None:intergenic 30.0%
CAAATGATCAAACATCACAA+AGG + chr1.1:64139658-64139677 None:intergenic 30.0%
CAAATGTATCAGGTATTTGA+TGG - chr1.1:64140823-64140842 MS.gene005480:CDS 30.0%
GAAGTCAGTTAAACAAACAA+AGG + chr1.1:64141403-64141422 None:intergenic 30.0%
GCATTTAATTATTCTGGTGT+AGG - chr1.1:64140535-64140554 MS.gene005480:CDS 30.0%
GTATTAATTAAGAACCGTGT+GGG - chr1.1:64140219-64140238 MS.gene005480:intron 30.0%
GTTTATAACCTTCATTGTTG+AGG - chr1.1:64140088-64140107 MS.gene005480:intron 30.0%
TAAACATAATCAAGAGACCT+AGG + chr1.1:64140774-64140793 None:intergenic 30.0%
TAAGACTACAGATATAACCT+CGG - chr1.1:64140562-64140581 MS.gene005480:intron 30.0%
TGAAATTGAGTTTCTTTGTG+AGG - chr1.1:64139937-64139956 MS.gene005480:CDS 30.0%
TGATTATTGCTCCCTTTATT+CGG + chr1.1:64139445-64139464 None:intergenic 30.0%
TTACTGCTTTGATATTTGGA+AGG - chr1.1:64141049-64141068 MS.gene005480:intron 30.0%
TTATCAACTTCAGATATCTG+AGG + chr1.1:64140922-64140941 None:intergenic 30.0%
! TAAAGTAGTTGATACCAAGA+AGG - chr1.1:64139980-64139999 MS.gene005480:intron 30.0%
!! ATTTAGTTATGGAGGCATTA+CGG - chr1.1:64141826-64141845 MS.gene005480:intron 30.0%
!! GTGAAGTATTTTCCGAATAA+AGG - chr1.1:64139430-64139449 MS.gene005480:CDS 30.0%
!! TATTAGGTTGAAAGAGGATA+AGG - chr1.1:64141168-64141187 MS.gene005480:intron 30.0%
!!! TGAAGAGAAGTTAGTTTTCT+AGG + chr1.1:64140165-64140184 None:intergenic 30.0%
AAACCAAGAACCTAAAAGGA+TGG + chr1.1:64141080-64141099 None:intergenic 35.0%
AAAGCTCATTACCCCATAAA+AGG + chr1.1:64140747-64140766 None:intergenic 35.0%
ATGATCTTGAGACATGTCAA+TGG + chr1.1:64141502-64141521 None:intergenic 35.0%
CAATGTGACTGAAGAACTTA+GGG - chr1.1:64140183-64140202 MS.gene005480:intron 35.0%
CCAAAAGAAAAGCCTTTCTA+AGG + chr1.1:64140972-64140991 None:intergenic 35.0%
GATGATGAATTCCTCATCAT+AGG - chr1.1:64141705-64141724 MS.gene005480:intron 35.0%
GCTCTTACTGCTTTGATATT+TGG - chr1.1:64141045-64141064 MS.gene005480:intron 35.0%
GGATGATATAGATGCCAATT+GGG - chr1.1:64139607-64139626 MS.gene005480:CDS 35.0%
GTTGAGGATGGTTATCTTAA+TGG - chr1.1:64141573-64141592 MS.gene005480:intron 35.0%
TCAATGTGACTGAAGAACTT+AGG - chr1.1:64140182-64140201 MS.gene005480:intron 35.0%
TCAGTTAAACAAACAAAGGG+AGG + chr1.1:64141399-64141418 None:intergenic 35.0%
TCTGGTTGTTGTATTAGCTA+TGG - chr1.1:64141362-64141381 MS.gene005480:intron 35.0%
TGCTTTGATATTTGGAAGGT+AGG - chr1.1:64141053-64141072 MS.gene005480:intron 35.0%
TGGATGATATAGATGCCAAT+TGG - chr1.1:64139606-64139625 MS.gene005480:CDS 35.0%
TGTATGACACTGAATGATCT+AGG - chr1.1:64141305-64141324 MS.gene005480:intron 35.0%
TTGACATGTCTCAAGATCAT+AGG - chr1.1:64141502-64141521 MS.gene005480:intron 35.0%
TTGTTGTATTAGCTATGGAG+AGG - chr1.1:64141367-64141386 MS.gene005480:intron 35.0%
! AGATGATTTGTCATCTCATC+TGG - chr1.1:64140691-64140710 MS.gene005480:CDS 35.0%
! CCTTAGAAAGGCTTTTCTTT+TGG - chr1.1:64140969-64140988 MS.gene005480:intron 35.0%
! CTAAACCAAGTGCCTTTTAT+GGG - chr1.1:64140732-64140751 MS.gene005480:CDS 35.0%
! GATGATTTGTCATCTCATCT+GGG - chr1.1:64140692-64140711 MS.gene005480:CDS 35.0%
! TAAACCAAGTGCCTTTTATG+GGG - chr1.1:64140733-64140752 MS.gene005480:CDS 35.0%
! TATCAGGTATTTGATGGTCA+CGG - chr1.1:64140829-64140848 MS.gene005480:intron 35.0%
!!! AGAAGTTAGTTTTCTAGGCA+TGG + chr1.1:64140160-64140179 None:intergenic 35.0%
AACTCAGGATCTGCAATCAA+AGG + chr1.1:64141663-64141682 None:intergenic 40.0%
ACAGCATCTCAATTTCCGTT+GGG + chr1.1:64141934-64141953 None:intergenic 40.0%
AGAAACCCATCAAACCCAAT+TGG + chr1.1:64139624-64139643 None:intergenic 40.0%
AGATGCCAATTGGGTTTGAT+GGG - chr1.1:64139616-64139635 MS.gene005480:CDS 40.0%
AGCAATGTGAACACTTCATC+AGG - chr1.1:64141015-64141034 MS.gene005480:intron 40.0%
AGCAGATATGTCATCCTTCT+TGG + chr1.1:64139997-64140016 None:intergenic 40.0%
ATTAAGAACCGTGTGGGTAT+TGG - chr1.1:64140225-64140244 MS.gene005480:intron 40.0%
ATTCTTCTACCTAGAGGGAT+TGG + chr1.1:64141334-64141353 None:intergenic 40.0%
ATTGGGACATGAAGTTACCT+AGG - chr1.1:64141625-64141644 MS.gene005480:intron 40.0%
CTAAATTAGCCCACCCAAAT+TGG + chr1.1:64140285-64140304 None:intergenic 40.0%
GCAATGTGAACACTTCATCA+GGG - chr1.1:64141016-64141035 MS.gene005480:intron 40.0%
GCACATAACCTCAACAATGA+AGG + chr1.1:64140099-64140118 None:intergenic 40.0%
GGTAGAGAATTCCCTTAGAA+AGG - chr1.1:64140957-64140976 MS.gene005480:intron 40.0%
TACAGCATCTCAATTTCCGT+TGG + chr1.1:64141935-64141954 None:intergenic 40.0%
TAGATGCCAATTGGGTTTGA+TGG - chr1.1:64139615-64139634 MS.gene005480:CDS 40.0%
TATCAAAGCAGTAAGAGCTG+TGG + chr1.1:64141043-64141062 None:intergenic 40.0%
TATTAGCTATGGAGAGGAGA+AGG - chr1.1:64141373-64141392 MS.gene005480:intron 40.0%
TCATCTTCCATGTATCTACG+TGG + chr1.1:64140659-64140678 None:intergenic 40.0%
TCCTCAAACCTTTACGAACA+AGG + chr1.1:64141776-64141795 None:intergenic 40.0%
TGCTTCTTTCAGGCTTCTAA+TGG - chr1.1:64141428-64141447 MS.gene005480:intron 40.0%
TTCTTTCAGGCTTCTAATGG+TGG - chr1.1:64141431-64141450 MS.gene005480:intron 40.0%
TTGGGACATGAAGTTACCTA+GGG - chr1.1:64141626-64141645 MS.gene005480:intron 40.0%
TTGTAGCTTGAGAAGCTTGT+TGG - chr1.1:64141974-64141993 MS.gene005480:CDS 40.0%
TTGTTCGTAAAGGTTTGAGG+AGG - chr1.1:64141775-64141794 MS.gene005480:intron 40.0%
! CCTAAACCAAGTGCCTTTTA+TGG - chr1.1:64140731-64140750 MS.gene005480:CDS 40.0%
!! ATTACCCCATAAAAGGCACT+TGG + chr1.1:64140740-64140759 None:intergenic 40.0%
!! CCATAAAAGGCACTTGGTTT+AGG + chr1.1:64140734-64140753 None:intergenic 40.0%
!! GGGTACTATTAGGTTGAAAG+AGG - chr1.1:64141162-64141181 MS.gene005480:intron 40.0%
!! TATCAGTTACGAGAGCACTA+GGG - chr1.1:64141601-64141620 MS.gene005480:intron 40.0%
!! TTATCAGTTACGAGAGCACT+AGG - chr1.1:64141600-64141619 MS.gene005480:intron 40.0%
!!! GGTAATGAGCTTTTTCACCT+AGG - chr1.1:64140754-64140773 MS.gene005480:CDS 40.0%
!!! TGACTTCTATTTTGGGATCG+AGG - chr1.1:64139690-64139709 MS.gene005480:CDS 40.0%
ACAGATATAACCTCGGAAGC+TGG - chr1.1:64140569-64140588 MS.gene005480:intron 45.0%
AGAATTGGGTGGCTATGTTG+AGG - chr1.1:64141557-64141576 MS.gene005480:intron 45.0%
AGGATCTGCAATCAAAGGTG+AGG + chr1.1:64141658-64141677 None:intergenic 45.0%
AGTTCTCAGTCGTAAAGGAG+AGG - chr1.1:64141476-64141495 MS.gene005480:intron 45.0%
CAGCATCTCAATTTCCGTTG+GGG + chr1.1:64141933-64141952 None:intergenic 45.0%
CATCCTCTGTTAGAACCACT+TGG + chr1.1:64141689-64141708 None:intergenic 45.0%
CCTCCTTGTAGTGCCAATTT+GGG - chr1.1:64140269-64140288 MS.gene005480:intron 45.0%
CTATTTATCCATCAGAGCGG+AGG - chr1.1:64141526-64141545 MS.gene005480:intron 45.0%
CTTATATACGCTGCAGCTTC+AGG + chr1.1:64140859-64140878 None:intergenic 45.0%
CTTCTAATGGTGGCAAATGC+CGG - chr1.1:64141441-64141460 MS.gene005480:intron 45.0%
CTTGTAGTGCCAATTTGGGT+GGG - chr1.1:64140273-64140292 MS.gene005480:intron 45.0%
CTTTACGACTGAGAACTGCT+CGG + chr1.1:64141473-64141492 None:intergenic 45.0%
GGATCTGCAATCAAAGGTGA+GGG + chr1.1:64141657-64141676 None:intergenic 45.0%
GGCCTATTTATCCATCAGAG+CGG - chr1.1:64141523-64141542 MS.gene005480:intron 45.0%
GGGAGCAATAATCACGAGAT+CGG - chr1.1:64139451-64139470 MS.gene005480:CDS 45.0%
TCCTCCTTGTAGTGCCAATT+TGG - chr1.1:64140268-64140287 MS.gene005480:intron 45.0%
TGAGCTTCGGCAAATGTATC+AGG - chr1.1:64140813-64140832 MS.gene005480:CDS 45.0%
TGCCTCCATAACTAAATCCC+TGG + chr1.1:64141823-64141842 None:intergenic 45.0%
TGGGACATGAAGTTACCTAG+GGG - chr1.1:64141627-64141646 MS.gene005480:intron 45.0%
TGTTGTGTGTCAACAAAGCG+TGG - chr1.1:64139405-64139424 MS.gene005480:CDS 45.0%
TTCCTCATCATAGGATGCGA+CGG - chr1.1:64141714-64141733 MS.gene005480:intron 45.0%
! CTCCGCTCTGATGGATAAAT+AGG + chr1.1:64141528-64141547 None:intergenic 45.0%
! GAAGGTAGGTCCATCCTTTT+AGG - chr1.1:64141067-64141086 MS.gene005480:intron 45.0%
! GCCTTGTTCGTAAAGGTTTG+AGG - chr1.1:64141772-64141791 MS.gene005480:intron 45.0%
! TCTTTTGGCAGACTCAGCTT+TGG - chr1.1:64140984-64141003 MS.gene005480:intron 45.0%
!! AGCTTGAGAAGCTTGTTGGA+AGG - chr1.1:64141978-64141997 MS.gene005480:CDS 45.0%
!! ATCAGTTACGAGAGCACTAG+GGG - chr1.1:64141602-64141621 MS.gene005480:intron 45.0%
!! GCTGTTAGCCTTGTTCGTAA+AGG - chr1.1:64141765-64141784 MS.gene005480:intron 45.0%
!!! GGTCCATCCTTTTAGGTTCT+TGG - chr1.1:64141074-64141093 MS.gene005480:intron 45.0%
AAAACTACCGGAACGGATGG+AGG + chr1.1:64140624-64140643 None:intergenic 50.0%
AAACTACCGGAACGGATGGA+GGG + chr1.1:64140623-64140642 None:intergenic 50.0%
AGATTCAAGACCAGCTTCCG+AGG + chr1.1:64140582-64140601 None:intergenic 50.0%
CATCTCAATTTCCGTTGGGG+AGG + chr1.1:64141930-64141949 None:intergenic 50.0%
CATTGGGCCACGTAGATACA+TGG - chr1.1:64140649-64140668 MS.gene005480:CDS 50.0%
CCACCCAAATTGGCACTACA+AGG + chr1.1:64140275-64140294 None:intergenic 50.0%
CCCAAATTGGCACTACAAGG+AGG + chr1.1:64140272-64140291 None:intergenic 50.0%
CCCAATGTCGGCAAAACTAC+CGG + chr1.1:64140636-64140655 None:intergenic 50.0%
CCTCTGTTAGAACCACTTGG+CGG + chr1.1:64141686-64141705 None:intergenic 50.0%
CCTTGTAGTGCCAATTTGGG+TGG - chr1.1:64140272-64140291 MS.gene005480:intron 50.0%
CGAGCAGTTCTCAGTCGTAA+AGG - chr1.1:64141471-64141490 MS.gene005480:intron 50.0%
CGCCAGGGATTTAGTTATGG+AGG - chr1.1:64141818-64141837 MS.gene005480:intron 50.0%
GTATCTACGTGGCCCAATGT+CGG + chr1.1:64140648-64140667 None:intergenic 50.0%
GTGCGCCAGGGATTTAGTTA+TGG - chr1.1:64141815-64141834 MS.gene005480:intron 50.0%
TACAAAGAGCCTCTGCAGAG+AGG + chr1.1:64141959-64141978 None:intergenic 50.0%
TCTAGGTAGCCAATCCCTCT+AGG - chr1.1:64141322-64141341 MS.gene005480:intron 50.0%
TGTCGGCAAAACTACCGGAA+CGG + chr1.1:64140631-64140650 None:intergenic 50.0%
TTGGGTGGCTATGTTGAGGA+TGG - chr1.1:64141561-64141580 MS.gene005480:intron 50.0%
! AGGCGAGTTGAAGAATTGGG+TGG - chr1.1:64141546-64141565 MS.gene005480:intron 50.0%
! CAGGTATTTGATGGTCACGG+AGG - chr1.1:64140832-64140851 MS.gene005480:intron 50.0%
! CGGAGGCGAGTTGAAGAATT+GGG - chr1.1:64141543-64141562 MS.gene005480:intron 50.0%
!! AACCGTGTGGGTATTGGCTT+GGG - chr1.1:64140231-64140250 MS.gene005480:intron 50.0%
!! CCGGTAGTTTTGCCGACATT+GGG - chr1.1:64140633-64140652 MS.gene005480:intron 50.0%
!! GGAAGCTGGTCTTGAATCTG+CGG - chr1.1:64140583-64140602 MS.gene005480:intron 50.0%
!! TACGAGAGCACTAGGGGATT+GGG - chr1.1:64141608-64141627 MS.gene005480:intron 50.0%
!! TCCGGTAGTTTTGCCGACAT+TGG - chr1.1:64140632-64140651 MS.gene005480:intron 50.0%
!! TTACGAGAGCACTAGGGGAT+TGG - chr1.1:64141607-64141626 MS.gene005480:intron 50.0%
AAATCCCTGGCGCACTTCTC+TGG + chr1.1:64141810-64141829 None:intergenic 55.0%
AACTACCGGAACGGATGGAG+GGG + chr1.1:64140622-64140641 None:intergenic 55.0%
AATCCCTGGCGCACTTCTCT+GGG + chr1.1:64141809-64141828 None:intergenic 55.0%
AGAACCACTTGGCGGAACTC+AGG + chr1.1:64141678-64141697 None:intergenic 55.0%
AGATCCTGAGTTCCGCCAAG+TGG - chr1.1:64141671-64141690 MS.gene005480:intron 55.0%
ATGCTGTAGCCTCTCTGCAG+AGG - chr1.1:64141947-64141966 MS.gene005480:CDS 55.0%
CATAGGATGCGACGGCATCT+GGG - chr1.1:64141722-64141741 MS.gene005480:intron 55.0%
CTCAATTTCCGTTGGGGAGG+TGG + chr1.1:64141927-64141946 None:intergenic 55.0%
CTCTGACTCCCCATGGTCAA+GGG + chr1.1:64141898-64141917 None:intergenic 55.0%
GGCAAAACTACCGGAACGGA+TGG + chr1.1:64140627-64140646 None:intergenic 55.0%
GTCCCAAGCCAATACCCACA+CGG + chr1.1:64140236-64140255 None:intergenic 55.0%
TCATAGGATGCGACGGCATC+TGG - chr1.1:64141721-64141740 MS.gene005480:intron 55.0%
TGCCGTCGCATCCTATGATG+AGG + chr1.1:64141719-64141738 None:intergenic 55.0%
TTTGTCCCCTCCATCCGTTC+CGG - chr1.1:64140614-64140633 MS.gene005480:intron 55.0%
! ACAAGGAGGAGTACACTCCC+AGG + chr1.1:64140258-64140277 None:intergenic 55.0%
! GCGGAGGCGAGTTGAAGAAT+TGG - chr1.1:64141542-64141561 MS.gene005480:intron 55.0%
!! AAAGGTGAGGGAGTACCCCT+AGG + chr1.1:64141645-64141664 None:intergenic 55.0%
!! CCGCCAAGTGGTTCTAACAG+AGG - chr1.1:64141683-64141702 MS.gene005480:intron 55.0%
!! GAACCGTGTGGGTATTGGCT+TGG - chr1.1:64140230-64140249 MS.gene005480:intron 55.0%
!! TGGGTATTGGCTTGGGACCT+GGG - chr1.1:64140238-64140257 MS.gene005480:intron 55.0%
AGCCATCTCCACCTCCCCAA+CGG - chr1.1:64141916-64141935 MS.gene005480:CDS 60.0%
CCTCTCCTCCCTTGACCATG+GGG - chr1.1:64141887-64141906 MS.gene005480:CDS 60.0%
GAGAACTGCTCGGCAGTCAC+CGG + chr1.1:64141463-64141482 None:intergenic 60.0%
GCCTCTCCTCCCTTGACCAT+GGG - chr1.1:64141886-64141905 MS.gene005480:CDS 60.0%
GCTCTGACTCCCCATGGTCA+AGG + chr1.1:64141899-64141918 None:intergenic 60.0%
TCAACTCGCCTCCGCTCTGA+TGG + chr1.1:64141537-64141556 None:intergenic 60.0%
TGACTCCCCATGGTCAAGGG+AGG + chr1.1:64141895-64141914 None:intergenic 60.0%
TGCCTCTCCTCCCTTGACCA+TGG - chr1.1:64141885-64141904 MS.gene005480:CDS 60.0%
TTCCGTTGGGGAGGTGGAGA+TGG + chr1.1:64141921-64141940 None:intergenic 60.0%
! ATGACCCAGAGAAGTGCGCC+AGG - chr1.1:64141802-64141821 MS.gene005480:intron 60.0%
! TGACCCAGAGAAGTGCGCCA+GGG - chr1.1:64141803-64141822 MS.gene005480:intron 60.0%
!! GAGATGGCTCTGACTCCCCA+TGG + chr1.1:64141905-64141924 None:intergenic 60.0%
!! GTGGGTATTGGCTTGGGACC+TGG - chr1.1:64140237-64140256 MS.gene005480:intron 60.0%
CCCCATGGTCAAGGGAGGAG+AGG + chr1.1:64141890-64141909 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 64139385 64142016 64139385 ID=MS.gene005480
chr1.1 mRNA 64139385 64142016 64139385 ID=MS.gene005480.t1;Parent=MS.gene005480
chr1.1 exon 64141855 64142016 64141855 ID=MS.gene005480.t1.exon1;Parent=MS.gene005480.t1
chr1.1 CDS 64141855 64142016 64141855 ID=cds.MS.gene005480.t1;Parent=MS.gene005480.t1
chr1.1 exon 64140647 64140844 64140647 ID=MS.gene005480.t1.exon2;Parent=MS.gene005480.t1
chr1.1 CDS 64140647 64140844 64140647 ID=cds.MS.gene005480.t1;Parent=MS.gene005480.t1
chr1.1 exon 64140331 64140566 64140331 ID=MS.gene005480.t1.exon3;Parent=MS.gene005480.t1
chr1.1 CDS 64140331 64140566 64140331 ID=cds.MS.gene005480.t1;Parent=MS.gene005480.t1
chr1.1 exon 64139385 64139961 64139385 ID=MS.gene005480.t1.exon4;Parent=MS.gene005480.t1
chr1.1 CDS 64139385 64139961 64139385 ID=cds.MS.gene005480.t1;Parent=MS.gene005480.t1
Gene Sequence

>MS.gene005480

ATGGTGGCTGAAGCAGAAGTTGTTGTGTGTCAACAAAGCGTGGATGTGAAGTATTTTCCGAATAAAGGGAGCAATAATCACGAGATCGGTGATGTAGATTCGAATTTTGATCGAGTTCGTGTTTCTGAATCAGTTTCTGCTGAGTTACTTACTACAAAAGAAGTTAGTTTTTTCAGACACCCTTTTGAGAATTTCTTCTGTTTTTGGTGATTTTGTTTTGTTGGATGATATAGATGCCAATTGGGTTTGATGGGTTTCTTTCTTTCTCTTCCTTTGTGATGTTTGATCATTTGATGTGAATTCTTTGACTTCTATTTTGGGATCGAGGTTCTAACATAAATAGAAAGAAAAACAAATTTGGAAACTTTTGGATCAGTAATCTGTTTATATGCTGATTTTGATTGATCTTAGAAGGAGATACCTGAATTTTGATAATTTAGTTTAGATTTTTTATTTAGCTTAGAAATTGGACTTATATATTTAGTCTAGTCCAATTTATTTTTATGATGATCCAAAAAAAATTTAGAACAAGGGAATCTCTCTCTATCCAGTTGAAATTGAGTTTCTTTGTGAGGTTTGATATGTGTGTCGATCTTAAAGTAGTTGATACCAAGAAGGATGACATATCTGCTAGCAAGCATATGTTGTTGATCGAGTAATTTAACATTAGATTTTCAAAATTGTGATTGTAATTTGATTTGTAGTTTATAACCTTCATTGTTGAGGTTATGTGCAGTCAAAATATTTGTAGCCATTATTAGTATTATATGATCCATGCCTAGAAAACTAACTTCTCTTCAATGTGACTGAAGAACTTAGGGATAGCCATTATTAGTATTAATTAAGAACCGTGTGGGTATTGGCTTGGGACCTGGGAGTGTACTCCTCCTTGTAGTGCCAATTTGGGTGGGCTAATTTAGCTTCTTCAAAAAAAAAAAAAAAATTAAGAACCGTGTGTGTTGATTGTATAAATTGCAGCATATTTTTTTTTTCTTTTCATATCTCATGTGGTAGTTTGAAGCATTTTGTTTTTCTGTGTATCTAGACTAGTCTAGTCTAACGTAAAAAAAAAAAAAAAAAAGACTAGTCTAGTCTCAAGCTACACTAAATAGTGCGTTTTAGATACTTATGATTCTCATTTTTCTGATTTGCATTTAATTATTCTGGTGTAGGATGTTAAGACTACAGATATAACCTCGGAAGCTGGTCTTGAATCTGCGGTTCTGCAATTTGTCCCCTCCATCCGTTCCGGTAGTTTTGCCGACATTGGGCCACGTAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCATCTCATCTGGGATCACAATACAATTTTCCTAAACCAAGTGCCTTTTATGGGGTAATGAGCTTTTTCACCTAGGTCTCTTGATTATGTTTAATCTCATTGTAAATCTAATTGAGCTTCGGCAAATGTATCAGGTATTTGATGGTCACGGAGGACCTGAAGCTGCAGCGTATATAAGAAAAAATGTTCTAAAATTCTTCTTTGAGGATGTCAATTTTCCTCAGATATCTGAAGTTGATAATGTATTTTTACAAGAGGTAGAGAATTCCCTTAGAAAGGCTTTTCTTTTGGCAGACTCAGCTTTGGCTGATGATAGCAATGTGAACACTTCATCAGGGACCACAGCTCTTACTGCTTTGATATTTGGAAGGTAGGTCCATCCTTTTAGGTTCTTGGTTTTTCTTTTTATTCCACTATCTAATGTTTATTTATTTTGTACATTTGTAATGGCTATAATGTATGGGTACTATTAGGTTGAAAGAGGATAAGGATAACTACATCTCAAACAATTAAGAAGCATTTGAAGTTAATGAATTTCACTTCATTGAACATGTTTCATTACACTAAACATGTTTCATTAGACATGGTTCGTGATTGAATATTATGTATGACACTGAATGATCTAGGTAGCCAATCCCTCTAGGTAGAAGAATAAAAAAACTCTGGTTGTTGTATTAGCTATGGAGAGGAGAAGGCCTCCCTTTGTTTGTTTAACTGACTTCTAATATGCTTCTTTCAGGCTTCTAATGGTGGCAAATGCCGGTGACTGCCGAGCAGTTCTCAGTCGTAAAGGAGAGGCCATTGACATGTCTCAAGATCATAGGCCTATTTATCCATCAGAGCGGAGGCGAGTTGAAGAATTGGGTGGCTATGTTGAGGATGGTTATCTTAATGGCGTTTTATCAGTTACGAGAGCACTAGGGGATTGGGACATGAAGTTACCTAGGGGTACTCCCTCACCTTTGATTGCAGATCCTGAGTTCCGCCAAGTGGTTCTAACAGAGGATGATGAATTCCTCATCATAGGATGCGACGGCATCTGGGATGTGATGACAAGTCAGCATGCTGTTAGCCTTGTTCGTAAAGGTTTGAGGAGGCATGATGACCCAGAGAAGTGCGCCAGGGATTTAGTTATGGAGGCATTACGGCTCAACACATTTGACAATCTTACAGTGATCATCATATGCCTCTCCTCCCTTGACCATGGGGAGTCAGAGCCATCTCCACCTCCCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGAAGCTTGTTGGAAGGCAATGCTAGCAACTGA
Protein sequence

>MS.gene005480.t1

MVAEAEVVVCQQSVDVKYFPNKGSNNHEIGDVDSNFDRVRVSESVSAELLTTKEDVKTTDITSEAGLESAVLQFVPSIRSGSFADIGPRRYMEDEHIRIDDLSSHLGSQYNFPKPSAFYGVFDGHGGPEAAAYIRKNVLKFFFEDVNFPQISEVDNVFLQEVENSLRKAFLLADSALADDSNVNTSSGTTALTALIFGRLLMVANAGDCRAVLSRKGEAIDMSQDHRPIYPSERRRVEELGGYVEDGYLNGVLSVTRALGDWDMKLPRGTPSPLIADPEFRQVVLTEDDEFLIIGCDGIWDVMTSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIICLSSLDHGESEPSPPPQRKLRCCSLSAEALCSLRSLLEGNASN