Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073239.t1 | RHN43780.1 | 88.8 | 402 | 44 | 1 | 289 | 689 | 50 | 451 | 2.50E-200 | 708.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073239.t1 | P10978 | 22.4 | 415 | 283 | 10 | 286 | 686 | 19 | 408 | 1.9e-18 | 95.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073239.t1 | A0A396GRW7 | 88.8 | 402 | 44 | 1 | 289 | 689 | 50 | 451 | 1.8e-200 | 708.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057208 | MS.gene073239 | 0.808085 | 3.68E-50 | -1.69E-46 |
| MS.gene058781 | MS.gene073239 | 0.804323 | 2.28E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene073239 | 0.8182 | 2.22E-52 | -1.69E-46 |
| MS.gene059051 | MS.gene073239 | 0.808467 | 3.05E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene073239 | 0.807816 | 4.20E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073239.t1 | MTR_4g044297 | 97.260 | 292 | 7 | 1 | 1 | 292 | 1 | 291 | 0.0 | 603 |
| MS.gene073239.t1 | MTR_2g090210 | 77.586 | 290 | 60 | 2 | 8 | 292 | 10 | 299 | 2.55e-155 | 451 |
| MS.gene073239.t1 | MTR_6g066280 | 43.408 | 311 | 113 | 5 | 35 | 291 | 12 | 313 | 1.23e-70 | 233 |
| MS.gene073239.t1 | MTR_1g077460 | 43.302 | 321 | 139 | 10 | 9 | 291 | 13 | 328 | 2.32e-63 | 214 |
| MS.gene073239.t1 | MTR_6g082450 | 37.349 | 332 | 146 | 7 | 3 | 289 | 67 | 381 | 4.52e-59 | 204 |
| MS.gene073239.t1 | MTR_1g110070 | 37.812 | 320 | 153 | 7 | 8 | 292 | 89 | 397 | 2.13e-58 | 203 |
| MS.gene073239.t1 | MTR_4g120990 | 38.318 | 321 | 161 | 7 | 2 | 292 | 65 | 378 | 1.26e-57 | 200 |
| MS.gene073239.t1 | MTR_2g035080 | 36.760 | 321 | 163 | 8 | 3 | 292 | 73 | 384 | 6.25e-50 | 179 |
| MS.gene073239.t1 | MTR_1g087830 | 35.918 | 245 | 114 | 6 | 48 | 292 | 88 | 289 | 6.66e-42 | 154 |
| MS.gene073239.t1 | MTR_1g087810 | 34.646 | 254 | 124 | 6 | 41 | 291 | 83 | 297 | 3.02e-36 | 139 |
| MS.gene073239.t1 | MTR_6g044130 | 44.444 | 126 | 52 | 5 | 180 | 287 | 1 | 126 | 7.60e-20 | 86.7 |
| MS.gene073239.t1 | MTR_1g021965 | 66.038 | 53 | 18 | 0 | 402 | 454 | 112 | 164 | 7.02e-17 | 79.3 |
| MS.gene073239.t1 | MTR_6g077930 | 28.519 | 270 | 112 | 12 | 40 | 265 | 812 | 1044 | 1.41e-14 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073239.t1 | AT4G03420 | 70.486 | 288 | 82 | 2 | 8 | 292 | 7 | 294 | 1.70e-134 | 398 |
| MS.gene073239.t1 | AT1G03610 | 66.207 | 290 | 85 | 4 | 7 | 292 | 10 | 290 | 3.40e-129 | 384 |
| MS.gene073239.t1 | AT4G28150 | 59.459 | 296 | 89 | 6 | 1 | 292 | 1 | 269 | 2.52e-108 | 330 |
| MS.gene073239.t1 | AT4G28150 | 58.140 | 301 | 83 | 7 | 1 | 292 | 1 | 267 | 2.48e-106 | 325 |
| MS.gene073239.t1 | AT1G03610 | 68.860 | 228 | 59 | 3 | 7 | 230 | 10 | 229 | 4.22e-104 | 317 |
| MS.gene073239.t1 | AT1G17830 | 51.125 | 311 | 127 | 8 | 3 | 291 | 13 | 320 | 9.29e-87 | 276 |
| MS.gene073239.t1 | AT1G73210 | 50.327 | 306 | 120 | 7 | 3 | 291 | 7 | 297 | 4.46e-84 | 268 |
| MS.gene073239.t1 | AT1G73210 | 50.000 | 306 | 123 | 7 | 3 | 291 | 7 | 299 | 6.61e-84 | 268 |
| MS.gene073239.t1 | AT1G73210 | 50.000 | 306 | 123 | 7 | 3 | 291 | 7 | 299 | 6.61e-84 | 268 |
| MS.gene073239.t1 | AT4G28150 | 57.767 | 206 | 63 | 4 | 1 | 197 | 1 | 191 | 2.67e-69 | 225 |
| MS.gene073239.t1 | AT2G01260 | 40.594 | 303 | 149 | 8 | 6 | 288 | 62 | 353 | 9.16e-57 | 197 |
| MS.gene073239.t1 | AT1G15030 | 38.511 | 309 | 163 | 7 | 3 | 289 | 42 | 345 | 1.93e-55 | 193 |
| MS.gene073239.t1 | AT5G49220 | 37.624 | 303 | 166 | 6 | 2 | 292 | 101 | 392 | 2.81e-53 | 189 |
| MS.gene073239.t1 | AT4G16100 | 38.721 | 297 | 161 | 7 | 9 | 292 | 88 | 376 | 2.96e-53 | 189 |
| MS.gene073239.t1 | AT2G01260 | 41.250 | 240 | 115 | 5 | 6 | 226 | 62 | 294 | 2.48e-46 | 167 |
| MS.gene073239.t1 | AT1G15030 | 40.486 | 247 | 121 | 6 | 3 | 227 | 42 | 284 | 3.80e-46 | 166 |
| MS.gene073239.t1 | AT5G23380 | 34.983 | 303 | 150 | 9 | 7 | 290 | 6 | 280 | 3.00e-34 | 133 |
| MS.gene073239.t1 | AT5G23380 | 36.522 | 230 | 119 | 5 | 7 | 226 | 6 | 218 | 1.40e-27 | 111 |
| MS.gene073239.t1 | AT5G23380 | 36.522 | 230 | 119 | 5 | 7 | 226 | 6 | 218 | 1.40e-27 | 111 |
| MS.gene073239.t1 | AT2G01260 | 35.519 | 183 | 92 | 5 | 6 | 169 | 62 | 237 | 5.69e-21 | 93.6 |
| MS.gene073239.t1 | AT5G08360 | 34.078 | 179 | 91 | 7 | 148 | 322 | 26 | 181 | 2.28e-14 | 72.4 |
| MS.gene073239.t1 | AT4G00980 | 23.282 | 262 | 179 | 6 | 287 | 540 | 213 | 460 | 8.89e-11 | 65.5 |
Find 151 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGAAACCTTAACCGTTTA+TGG | 0.049207 | 4.3:+55032999 | MS.gene073239:CDS |
| CTCTCGAACTGCTGCTGTTT+CGG | 0.152610 | 4.3:+55040893 | MS.gene073239:CDS |
| GTCCCTCCCTTTCAGATTAA+TGG | 0.178578 | 4.3:+55035184 | MS.gene073239:intron |
| CAAGATGATTGAAGAATTAA+AGG | 0.209596 | 4.3:+55040281 | MS.gene073239:CDS |
| TCTCGAACTGCTGCTGTTTC+GGG | 0.214024 | 4.3:+55040894 | MS.gene073239:CDS |
| GAATTCTCCTGAAGCTAATT+TGG | 0.215962 | 4.3:+55040698 | MS.gene073239:CDS |
| CACCTTCCTTCCTCTTCTCT+TGG | 0.218047 | 4.3:-55037625 | None:intergenic |
| CGGGAAAGACCTTGGCTTTA+GGG | 0.227954 | 4.3:+55040946 | MS.gene073239:CDS |
| TCTTCTGATTAGTGTTGTTC+TGG | 0.241865 | 4.3:-55040515 | None:intergenic |
| ACAAGGAAGCGAAGGAAATA+TGG | 0.258722 | 4.3:+55040136 | MS.gene073239:CDS |
| TTGTAGTCATTCCATGATTC+AGG | 0.261369 | 4.3:-55040360 | None:intergenic |
| TCGGGAAAGACCTTGGCTTT+AGG | 0.261473 | 4.3:+55040945 | MS.gene073239:CDS |
| TGCTGAAGTTATGCATAATT+AGG | 0.261593 | 4.3:+55041133 | MS.gene073239:CDS |
| ATTTCACTCTGAGTGATCTT+TGG | 0.265625 | 4.3:+55033050 | MS.gene073239:CDS |
| TTCAGAGAAGAGATTGATTC+TGG | 0.274830 | 4.3:+55033297 | MS.gene073239:intron |
| TTGTGACCAGGTTTATGATT+AGG | 0.302038 | 4.3:-55040555 | None:intergenic |
| CTCCCGGATGAGTTCGTTGC+TGG | 0.318441 | 4.3:+55040318 | MS.gene073239:CDS |
| TATTTACAAGCAATAATTTC+AGG | 0.321189 | 4.3:+55033179 | MS.gene073239:CDS |
| AAATTTACCTTATCAATTAG+AGG | 0.328507 | 4.3:-55033498 | None:intergenic |
| GAGAATTCTCATCTTTCTTT+CGG | 0.330015 | 4.3:-55040683 | None:intergenic |
| TTTGGAATTGTTTCGATGAA+TGG | 0.331760 | 4.3:+55033068 | MS.gene073239:CDS |
| ACCTTCCTTCCTCTTCTCTT+GGG | 0.337222 | 4.3:-55037624 | None:intergenic |
| TACTAATCCCACTTTCAAAA+AGG | 0.345164 | 4.3:+55040602 | MS.gene073239:CDS |
| TCCCTCCCTTTCAGATTAAT+GGG | 0.345433 | 4.3:+55035185 | MS.gene073239:intron |
| ACACTTTCATCTTCATTTCA+AGG | 0.353986 | 4.3:+55036622 | MS.gene073239:CDS |
| TGGCTGCCCTGCTCTCCTTT+CGG | 0.354434 | 4.3:-55040458 | None:intergenic |
| CCTTTAGCCAAATTAGCTTC+AGG | 0.367437 | 4.3:-55040705 | None:intergenic |
| CAAGGGAATTTGTGGGTCTC+TGG | 0.377765 | 4.3:+55037692 | MS.gene073239:CDS |
| ACTGCTGCTGTTTCGGGAAA+AGG | 0.389633 | 4.3:+55040900 | MS.gene073239:CDS |
| GGCATCTCTTTGCAACCATT+TGG | 0.394890 | 4.3:+55037650 | MS.gene073239:CDS |
| GGAGAAGAACATGTTTATCT+TGG | 0.410626 | 4.3:+55040867 | MS.gene073239:CDS |
| AAGAGCCACATAAATTAGAT+TGG | 0.412807 | 4.3:-55040997 | None:intergenic |
| GCAACTGCCATCCAACTTGC+TGG | 0.415630 | 4.3:-55035259 | None:intergenic |
| ATTAGATTGGTTCTTATCTC+CGG | 0.415835 | 4.3:-55040984 | None:intergenic |
| ACCATCTAAGTTTCTACAAA+AGG | 0.419530 | 4.3:+55032870 | MS.gene073239:CDS |
| TTCATGGTTGAAGCAACTTA+AGG | 0.420063 | 4.3:+55037766 | MS.gene073239:CDS |
| TATCACACGGATTCCATAAA+CGG | 0.423998 | 4.3:-55033012 | None:intergenic |
| GACAAAGAATAATGTATTTG+TGG | 0.426818 | 4.3:+55041070 | MS.gene073239:CDS |
| ACGGATTCCATAAACGGTTA+AGG | 0.435111 | 4.3:-55033006 | None:intergenic |
| CCTGAAGCTAATTTGGCTAA+AGG | 0.442798 | 4.3:+55040705 | MS.gene073239:CDS |
| CAATGAGGTCAATGCAATCT+AGG | 0.444961 | 4.3:+55032806 | None:intergenic |
| TTGTGACTGATGTGAACAAA+TGG | 0.450745 | 4.3:+55040769 | MS.gene073239:CDS |
| ATTCCAGCAACGAACTCATC+CGG | 0.453732 | 4.3:-55040321 | None:intergenic |
| ACAAAGAATAATGTATTTGT+GGG | 0.455636 | 4.3:+55041071 | MS.gene073239:CDS |
| ATTAGAGGAACTCTTCCATA+TGG | 0.461032 | 4.3:-55033483 | None:intergenic |
| CATTAGTAGCACATATTTGT+CGG | 0.461545 | 4.3:-55040812 | None:intergenic |
| AAAGGAGAGCAGGGCAGCCA+AGG | 0.464251 | 4.3:+55040461 | MS.gene073239:CDS |
| ATCTTTAATTGTTCTTCCCA+TGG | 0.468483 | 4.3:-55036572 | None:intergenic |
| CTGGCATTTGAATGACCGAT+TGG | 0.470292 | 4.3:+55033425 | MS.gene073239:CDS |
| ATACCAACCGAAAGGAGAGC+AGG | 0.472332 | 4.3:+55040451 | MS.gene073239:CDS |
| ACAAGATGCAAGGGAATTTG+TGG | 0.474690 | 4.3:+55037684 | MS.gene073239:CDS |
| GGAAGCTAATGTCTTAGCCT+TGG | 0.479020 | 4.3:-55040478 | None:intergenic |
| TGCCCTGCTCTCCTTTCGGT+TGG | 0.479668 | 4.3:-55040454 | None:intergenic |
| TTCACCTCCTACACTACTGT+GGG | 0.481535 | 4.3:+55040840 | MS.gene073239:CDS |
| TGTTCTGGATCAGATTTGCT+TGG | 0.481936 | 4.3:-55040500 | None:intergenic |
| AAGAGTTCCTCTAATTGATA+AGG | 0.483084 | 4.3:+55033491 | MS.gene073239:CDS |
| AAATACACCGCTGAAAATGC+TGG | 0.483130 | 4.3:+55040174 | MS.gene073239:CDS |
| GTTCTGGATCAGATTTGCTT+GGG | 0.489437 | 4.3:-55040499 | None:intergenic |
| CAAGGAAGCGAAGGAAATAT+GGG | 0.495294 | 4.3:+55040137 | MS.gene073239:CDS |
| TATGTAGTGTGGCAGATTCA+TGG | 0.496401 | 4.3:+55037750 | MS.gene073239:CDS |
| ATTAGTAGCACATATTTGTC+GGG | 0.496480 | 4.3:-55040811 | None:intergenic |
| CCATGGGAATATGATAGATC+GGG | 0.496571 | 4.3:-55036555 | None:intergenic |
| GGCTGAAAGTATTCCTCTCC+CGG | 0.499862 | 4.3:+55040302 | MS.gene073239:CDS |
| GAAGGAAATATGGGATTCAA+TGG | 0.504196 | 4.3:+55040146 | MS.gene073239:CDS |
| ATTTGAATTGCAGAGAGGTA+AGG | 0.504614 | 4.3:-55033157 | None:intergenic |
| TCTCTTCAATCTCATTATCA+AGG | 0.505817 | 4.3:-55037601 | None:intergenic |
| AGAAACTTAGATGGTACAAC+AGG | 0.506246 | 4.3:-55032862 | None:intergenic |
| AATAATGTATTTGTGGGGAA+AGG | 0.508021 | 4.3:+55041077 | MS.gene073239:CDS |
| CAAGTTGGATGGCAGTTGCT+TGG | 0.508186 | 4.3:+55035263 | MS.gene073239:CDS |
| GTTATGTTGAAGCTCACATC+GGG | 0.509325 | 4.3:+55040927 | MS.gene073239:CDS |
| CCCATGGGAATATGATAGAT+CGG | 0.510844 | 4.3:-55036556 | None:intergenic |
| TCTTTAATTGTTCTTCCCAT+GGG | 0.512415 | 4.3:-55036571 | None:intergenic |
| AGGGGATGTCTTACATGTGC+CGG | 0.517244 | 4.3:+55040965 | MS.gene073239:CDS |
| CACATAAAGAAGTCGACACA+TGG | 0.517541 | 4.3:+55040037 | MS.gene073239:CDS |
| CATCTGAGCAAGATAGTCTC+TGG | 0.520611 | 4.3:+55033406 | MS.gene073239:CDS |
| TTGATCTTTCACCAGCAAGT+TGG | 0.526084 | 4.3:+55035248 | MS.gene073239:CDS |
| CGATGTCTACTGTTCGTACA+AGG | 0.526479 | 4.3:+55040119 | MS.gene073239:CDS |
| TGGCATTTGAATGACCGATT+GGG | 0.527348 | 4.3:+55033426 | MS.gene073239:CDS |
| TATGGTGAAGAAAGCAATCA+AGG | 0.530917 | 4.3:-55032834 | None:intergenic |
| TTGTACGTGGCTAAACCAAA+TGG | 0.531561 | 4.3:-55037665 | None:intergenic |
| AGAGGTAAGGAACATAGTAT+TGG | 0.534665 | 4.3:-55033144 | None:intergenic |
| CCCGATCTATCATATTCCCA+TGG | 0.535808 | 4.3:+55036555 | MS.gene073239:CDS |
| ACCCAAGAGAAGAGGAAGGA+AGG | 0.536768 | 4.3:+55037623 | MS.gene073239:CDS |
| TTCCAGCAACGAACTCATCC+GGG | 0.539039 | 4.3:-55040320 | None:intergenic |
| TGGTAGGGACCAAGAAAAGC+TGG | 0.539606 | 4.3:+55037721 | MS.gene073239:CDS |
| CACAGTAGTGTAGGAGGTGA+AGG | 0.540897 | 4.3:-55040838 | None:intergenic |
| ATAGCGAGTGTGATAAGCTA+TGG | 0.542399 | 4.3:+55033364 | MS.gene073239:CDS |
| AAGAACCAATCTAATTTATG+TGG | 0.542568 | 4.3:+55040992 | MS.gene073239:CDS |
| GCTCACATCGGGAAAGACCT+TGG | 0.545868 | 4.3:+55040938 | MS.gene073239:CDS |
| GGAAATAAAGATGACCCAAT+CGG | 0.546064 | 4.3:-55033440 | None:intergenic |
| AACAAATGGGTGGTAGACTC+TGG | 0.549043 | 4.3:+55040783 | MS.gene073239:CDS |
| TTCGATGAATGGAGTGCCTA+TGG | 0.551127 | 4.3:+55033079 | MS.gene073239:CDS |
| GGGAAAGACCTTGGCTTTAG+GGG | 0.551613 | 4.3:+55040947 | MS.gene073239:CDS |
| CAAGATGCAAGGGAATTTGT+GGG | 0.553402 | 4.3:+55037685 | MS.gene073239:CDS |
| ATGGTACAACAGGTGTTGTA+TGG | 0.559797 | 4.3:-55032852 | None:intergenic |
| GGGTCTCTGGAAAATGTGGT+AGG | 0.563481 | 4.3:+55037705 | MS.gene073239:CDS |
| TCATAGGCAATTACTACCGC+TGG | 0.563622 | 4.3:+55040211 | MS.gene073239:CDS |
| GGGTTAGCAGAAAGATACCC+AGG | 0.563766 | 4.3:+55035205 | MS.gene073239:CDS |
| TTGAAGAGACCCAAGAGAAG+AGG | 0.567330 | 4.3:+55037615 | MS.gene073239:CDS |
| GCAACGAACTCATCCGGGAG+AGG | 0.577119 | 4.3:-55040315 | None:intergenic |
| ACAACACTAATCAGAAGAAG+AGG | 0.578645 | 4.3:+55040520 | MS.gene073239:CDS |
| AGATGATGACATTATTGTTG+CGG | 0.588057 | 4.3:+55040728 | MS.gene073239:CDS |
| CCGATCTATCATATTCCCAT+GGG | 0.588931 | 4.3:+55036556 | MS.gene073239:CDS |
| GATTGGAACTCCAACGCCAT+AGG | 0.589508 | 4.3:-55033095 | None:intergenic |
| GAATGGAGTGCCTATGGCGT+TGG | 0.591581 | 4.3:+55033085 | MS.gene073239:CDS |
| CTTCACCTCCTACACTACTG+TGG | 0.591839 | 4.3:+55040839 | MS.gene073239:CDS |
| TACCAACCGAAAGGAGAGCA+GGG | 0.594168 | 4.3:+55040452 | MS.gene073239:CDS |
| CTATGGACATCATCAGAAGA+GGG | 0.597455 | 4.3:+55033381 | MS.gene073239:CDS |
| ACGGTGGCTTAGAGTTGGTG+AGG | 0.602176 | 4.3:-55040005 | None:intergenic |
| CTGTTCGTACAAGGAAGCGA+AGG | 0.603326 | 4.3:+55040128 | MS.gene073239:CDS |
| GGGGAAAGGTTATTGTGACA+AGG | 0.603679 | 4.3:+55041091 | MS.gene073239:CDS |
| GGTCTCTGGAAAATGTGGTA+GGG | 0.604733 | 4.3:+55037706 | MS.gene073239:CDS |
| CACCTCCTACACTACTGTGG+GGG | 0.607902 | 4.3:+55040842 | MS.gene073239:CDS |
| TCTTTATGTGTTGATGAAGA+CGG | 0.610028 | 4.3:-55040024 | None:intergenic |
| TTAGCCACGTACAAGATGCA+AGG | 0.611061 | 4.3:+55037674 | MS.gene073239:CDS |
| ATGAAAGTGTGTGGTAAGTG+AGG | 0.614288 | 4.3:-55036609 | None:intergenic |
| TCTTTCACCAGCAAGTTGGA+TGG | 0.614478 | 4.3:+55035252 | MS.gene073239:CDS |
| AACAAACCTAATCATAAACC+TGG | 0.614902 | 4.3:+55040549 | MS.gene073239:CDS |
| GCTATGGACATCATCAGAAG+AGG | 0.617480 | 4.3:+55033380 | MS.gene073239:CDS |
| TGTGACTGATGTGAACAAAT+GGG | 0.618229 | 4.3:+55040770 | MS.gene073239:CDS |
| TCAACTGTTTCTCTATCACA+CGG | 0.620809 | 4.3:-55033025 | None:intergenic |
| TAAGACATCCCCTAAAGCCA+AGG | 0.621652 | 4.3:-55040955 | None:intergenic |
| GAGAAGAGGAAGGAAGGTGA+AGG | 0.622945 | 4.3:+55037629 | MS.gene073239:CDS |
| CATCACACACATCATCATTG+AGG | 0.626322 | 4.3:+55040428 | MS.gene073239:CDS |
| ATTCCCTTGCATCTTGTACG+TGG | 0.626371 | 4.3:-55037678 | None:intergenic |
| AGTTATGTTGAAGCTCACAT+CGG | 0.630323 | 4.3:+55040926 | MS.gene073239:CDS |
| TGAAGACGGTGGCTTAGAGT+TGG | 0.630421 | 4.3:-55040010 | None:intergenic |
| GGGAAAGGTTATTGTGACAA+GGG | 0.632962 | 4.3:+55041092 | MS.gene073239:CDS |
| TTGTGGGTCTCTGGAAAATG+TGG | 0.635104 | 4.3:+55037701 | MS.gene073239:CDS |
| GCTGGCCACTGTTATGTATG+TGG | 0.636472 | 4.3:+55040627 | MS.gene073239:CDS |
| TTCTGGTGATAGTGAGACAA+GGG | 0.640927 | 4.3:+55033314 | MS.gene073239:CDS |
| TAGCCACGTACAAGATGCAA+GGG | 0.647629 | 4.3:+55037675 | MS.gene073239:CDS |
| TAAATATTTGAATTGCAGAG+AGG | 0.649675 | 4.3:-55033162 | None:intergenic |
| CAAAGAATAATGTATTTGTG+GGG | 0.651318 | 4.3:+55041072 | MS.gene073239:CDS |
| CGGTGGCTTAGAGTTGGTGA+GGG | 0.653410 | 4.3:-55040004 | None:intergenic |
| CAAACAGAAGCAGTTACCGT+TGG | 0.654024 | 4.3:+55040398 | MS.gene073239:CDS |
| TTCTTTCGGTATCTGCACTG+AGG | 0.654953 | 4.3:-55040669 | None:intergenic |
| CATTGAGGATACCAACCGAA+AGG | 0.658729 | 4.3:+55040443 | MS.gene073239:CDS |
| AGAGACCCAAGAGAAGAGGA+AGG | 0.659862 | 4.3:+55037619 | MS.gene073239:CDS |
| TCTTACCACATACATAACAG+TGG | 0.664966 | 4.3:-55040632 | None:intergenic |
| GCTGGTTTCACTATGTAGTG+TGG | 0.665797 | 4.3:+55037739 | MS.gene073239:CDS |
| TCACCTCCTACACTACTGTG+GGG | 0.666274 | 4.3:+55040841 | MS.gene073239:CDS |
| ACATAAAGAAGTCGACACAT+GGG | 0.671429 | 4.3:+55040038 | MS.gene073239:CDS |
| ATTCTGGTGATAGTGAGACA+AGG | 0.671618 | 4.3:+55033313 | MS.gene073239:CDS |
| TTATGTGTTGATGAAGACGG+TGG | 0.687722 | 4.3:-55040021 | None:intergenic |
| GGTTAGCAGAAAGATACCCA+GGG | 0.695930 | 4.3:+55035206 | MS.gene073239:CDS |
| AAAGTGGGATTAGTAACACG+AGG | 0.717254 | 4.3:-55040594 | None:intergenic |
| TCTCTTCTGACATTGTCCAG+CGG | 0.723185 | 4.3:-55040227 | None:intergenic |
| GAAATGAAGATGAAAGTGTG+TGG | 0.729995 | 4.3:-55036618 | None:intergenic |
| GACTGATGTGAACAAATGGG+TGG | 0.763549 | 4.3:+55040773 | MS.gene073239:CDS |
| TGTGTGATGAGATCTGCCAA+CGG | 0.774608 | 4.3:-55040414 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 55032808 | 55041154 | 55032808 | ID=MS.gene073239 |
| chr4.3 | mRNA | 55032808 | 55041154 | 55032808 | ID=MS.gene073239.t1;Parent=MS.gene073239 |
| chr4.3 | exon | 55032808 | 55032891 | 55032808 | ID=MS.gene073239.t1.exon1;Parent=MS.gene073239.t1 |
| chr4.3 | CDS | 55032808 | 55032891 | 55032808 | ID=cds.MS.gene073239.t1;Parent=MS.gene073239.t1 |
| chr4.3 | exon | 55032992 | 55033200 | 55032992 | ID=MS.gene073239.t1.exon2;Parent=MS.gene073239.t1 |
| chr4.3 | CDS | 55032992 | 55033200 | 55032992 | ID=cds.MS.gene073239.t1;Parent=MS.gene073239.t1 |
| chr4.3 | exon | 55033302 | 55033512 | 55033302 | ID=MS.gene073239.t1.exon3;Parent=MS.gene073239.t1 |
| chr4.3 | CDS | 55033302 | 55033512 | 55033302 | ID=cds.MS.gene073239.t1;Parent=MS.gene073239.t1 |
| chr4.3 | exon | 55035199 | 55035284 | 55035199 | ID=MS.gene073239.t1.exon4;Parent=MS.gene073239.t1 |
| chr4.3 | CDS | 55035199 | 55035284 | 55035199 | ID=cds.MS.gene073239.t1;Parent=MS.gene073239.t1 |
| chr4.3 | exon | 55036552 | 55036643 | 55036552 | ID=MS.gene073239.t1.exon5;Parent=MS.gene073239.t1 |
| chr4.3 | CDS | 55036552 | 55036643 | 55036552 | ID=cds.MS.gene073239.t1;Parent=MS.gene073239.t1 |
| chr4.3 | exon | 55037594 | 55037787 | 55037594 | ID=MS.gene073239.t1.exon6;Parent=MS.gene073239.t1 |
| chr4.3 | CDS | 55037594 | 55037787 | 55037594 | ID=cds.MS.gene073239.t1;Parent=MS.gene073239.t1 |
| chr4.3 | exon | 55039961 | 55041154 | 55039961 | ID=MS.gene073239.t1.exon7;Parent=MS.gene073239.t1 |
| chr4.3 | CDS | 55039961 | 55041154 | 55039961 | ID=cds.MS.gene073239.t1;Parent=MS.gene073239.t1 |
| Gene Sequence |
| Protein sequence |
