Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07325.t1 | XP_013469155.1 | 94.9 | 236 | 12 | 0 | 1 | 236 | 1 | 236 | 1.10E-97 | 366.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07325.t1 | A0A072VMF3 | 94.9 | 236 | 12 | 0 | 1 | 236 | 32 | 267 | 7.6e-98 | 366.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050352 | MS.gene07325 | 0.978166 | 2.93E-145 | -1.69E-46 |
| MS.gene054142 | MS.gene07325 | 0.80897 | 2.38E-50 | -1.69E-46 |
| MS.gene057684 | MS.gene07325 | -0.823832 | 1.12E-53 | -1.69E-46 |
| MS.gene059900 | MS.gene07325 | -0.807589 | 4.69E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07325.t1 | MTR_1g086670 | 97.881 | 236 | 5 | 0 | 1 | 236 | 1 | 236 | 6.54e-172 | 473 |
| MS.gene07325.t1 | MTR_1g086670 | 97.881 | 236 | 5 | 0 | 1 | 236 | 32 | 267 | 8.42e-172 | 473 |
| MS.gene07325.t1 | MTR_2g033650 | 40.807 | 223 | 105 | 7 | 9 | 229 | 7 | 204 | 5.83e-31 | 114 |
| MS.gene07325.t1 | MTR_4g122710 | 33.816 | 207 | 132 | 3 | 14 | 219 | 12 | 214 | 2.30e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07325.t1 | AT1G02380 | 34.404 | 218 | 106 | 8 | 10 | 218 | 8 | 197 | 7.20e-27 | 103 |
| MS.gene07325.t1 | AT3G17120 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.14e-18 | 80.1 |
| MS.gene07325.t1 | AT3G17120 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.14e-18 | 80.1 |
| MS.gene07325.t1 | AT3G17120 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.14e-18 | 80.1 |
| MS.gene07325.t1 | AT3G17120 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.14e-18 | 80.1 |
| MS.gene07325.t1 | AT3G17120 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.14e-18 | 80.1 |
| MS.gene07325.t1 | AT4G01960 | 29.493 | 217 | 125 | 7 | 9 | 218 | 8 | 203 | 7.36e-18 | 80.1 |
| MS.gene07325.t1 | AT4G01960 | 29.493 | 217 | 125 | 7 | 9 | 218 | 8 | 203 | 7.36e-18 | 80.1 |
| MS.gene07325.t1 | AT4G01960 | 30.270 | 185 | 98 | 7 | 9 | 184 | 8 | 170 | 6.36e-15 | 71.2 |
Find 40 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGAATTGTTGGTGGATAA+AGG | 0.283179 | 1.4:-69128758 | MS.gene07325:CDS |
| GCCTCCTAGAGGTCCATCTT+TGG | 0.299097 | 1.4:-69128657 | MS.gene07325:CDS |
| AAAGGTTTAGAACATGTTAA+TGG | 0.299452 | 1.4:-69128740 | MS.gene07325:CDS |
| AATGGGGTTATGAATTTAGA+TGG | 0.319095 | 1.4:-69128866 | MS.gene07325:CDS |
| GCCAGGTTCATCTCCATTGC+TGG | 0.372215 | 1.4:+69126160 | None:intergenic |
| GAACATGTTAATGGAAATCA+TGG | 0.386666 | 1.4:-69128731 | MS.gene07325:CDS |
| AGAGATTCAACTTCAAAGAA+TGG | 0.402293 | 1.4:-69128905 | MS.gene07325:CDS |
| TTCCTCGTCATCATATTTCA+CGG | 0.422957 | 1.4:-69128473 | MS.gene07325:intron |
| GAATTTAGATGGATCAGAAA+AGG | 0.435059 | 1.4:-69128855 | MS.gene07325:CDS |
| AATTTAGATGGATCAGAAAA+GGG | 0.467182 | 1.4:-69128854 | MS.gene07325:CDS |
| TCTGATGCAACAGCTGACTC+AGG | 0.494621 | 1.4:+69126224 | None:intergenic |
| CTATATTGATGCAGGTATGC+AGG | 0.495267 | 1.4:-69126010 | MS.gene07325:intron |
| CTGCGAGTAGTGCGTCTGTT+GGG | 0.505670 | 1.4:-69126259 | MS.gene07325:CDS |
| AGAGGTCCATCTTTGGATGC+TGG | 0.505685 | 1.4:-69128650 | MS.gene07325:CDS |
| GTTGAATTTGACATTGAAAG+TGG | 0.538098 | 1.4:-69128965 | MS.gene07325:CDS |
| TCTGCGAGTAGTGCGTCTGT+TGG | 0.541422 | 1.4:-69126260 | MS.gene07325:CDS |
| CTGATGCAACAGCTGACTCA+GGG | 0.544449 | 1.4:+69126225 | None:intergenic |
| ACACTTGGAAAGTGAGAGCC+AGG | 0.544538 | 1.4:+69126143 | None:intergenic |
| TGATCACCAGCATCCAAAGA+TGG | 0.549760 | 1.4:+69128644 | None:intergenic |
| GCATCCAAAGATGGACCTCT+AGG | 0.550353 | 1.4:+69128653 | None:intergenic |
| ACGAACTTCAACACCAGCAA+TGG | 0.552140 | 1.4:-69126173 | MS.gene07325:CDS |
| TGAATGTAATCTAGAATTGT+TGG | 0.565076 | 1.4:-69128768 | MS.gene07325:CDS |
| ATATACAAATCTTTCTGCCA+TGG | 0.581731 | 1.4:-69128513 | MS.gene07325:CDS |
| GATGGACCTCTAGGAGGCAA+AGG | 0.587737 | 1.4:+69128662 | None:intergenic |
| TTGCGTTGAGGAAGCGTGCG+AGG | 0.596295 | 1.4:-69128595 | MS.gene07325:CDS |
| TTGCTGGTGTTGAAGTTCGT+AGG | 0.609539 | 1.4:+69126176 | None:intergenic |
| TTTGTATATGTCGAAGACGA+CGG | 0.611177 | 1.4:+69128527 | None:intergenic |
| ATGTAATCTAGAATTGTTGG+TGG | 0.614154 | 1.4:-69128765 | MS.gene07325:CDS |
| ACCAGCAATGGAGATGAACC+TGG | 0.617162 | 1.4:-69126161 | MS.gene07325:CDS |
| GGACCTCTAGGAGGCAAAGG+TGG | 0.627162 | 1.4:+69128665 | None:intergenic |
| TCAGCTGTTGCATCAGACGA+AGG | 0.631536 | 1.4:-69126218 | MS.gene07325:CDS |
| ATTGATGCAGGTATGCAGGA+AGG | 0.637045 | 1.4:-69126006 | MS.gene07325:intron |
| TGGTGAAAACACGAGCGAAG+AGG | 0.655654 | 1.4:-69128945 | MS.gene07325:CDS |
| TACCGTGAAATATGATGACG+AGG | 0.663224 | 1.4:+69128471 | None:intergenic |
| ATAACCCCATTCCATGACCA+AGG | 0.663825 | 1.4:+69128878 | None:intergenic |
| TGGTGATCATAAATTTGTGA+AGG | 0.670977 | 1.4:-69128630 | MS.gene07325:CDS |
| AAGCCACCTTTGCCTCCTAG+AGG | 0.671952 | 1.4:-69128668 | MS.gene07325:CDS |
| TCCAAAGATGGACCTCTAGG+AGG | 0.675340 | 1.4:+69128656 | None:intergenic |
| AATTAGCTGAGCTTGCGTTG+AGG | 0.678634 | 1.4:-69128607 | MS.gene07325:CDS |
| TGATGCAACAGCTGACTCAG+GGG | 0.699610 | 1.4:+69126226 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTCATAATTACTTAAAT+AGG | - | chr1.4:69128138-69128157 | MS.gene07325:intron | 10.0% |
| !! | AAAAAGTAAAAAGTTTGTAT+AGG | + | chr1.4:69127129-69127148 | None:intergenic | 15.0% |
| !!! | TCGTTTTTTCAAATTATTAT+CGG | - | chr1.4:69128433-69128452 | MS.gene07325:intron | 15.0% |
| !! | AATACAAAAGATTACGTATA+TGG | + | chr1.4:69126700-69126719 | None:intergenic | 20.0% |
| !! | ACCACAATGAAAATTTATAA+AGG | + | chr1.4:69127602-69127621 | None:intergenic | 20.0% |
| !! | TAAAGATGTTCATATGAAAT+AGG | + | chr1.4:69127867-69127886 | None:intergenic | 20.0% |
| !! | TACAAATACAATTGAATTCT+AGG | + | chr1.4:69126919-69126938 | None:intergenic | 20.0% |
| !! | TGGGAAAAATTATGTATATA+TGG | - | chr1.4:69128920-69128939 | MS.gene07325:CDS | 20.0% |
| !!! | TCCTTTATAAATTTTCATTG+TGG | - | chr1.4:69127598-69127617 | MS.gene07325:intron | 20.0% |
| !!! | TTACTTTTTCAACTCTTATA+AGG | - | chr1.4:69127140-69127159 | MS.gene07325:intron | 20.0% |
| ! | AATTTAGATGGATCAGAAAA+GGG | - | chr1.4:69126149-69126168 | MS.gene07325:CDS | 25.0% |
| ! | CGAATGTACATTATATCATA+AGG | - | chr1.4:69127421-69127440 | MS.gene07325:intron | 25.0% |
| ! | GAAATGATTATTCAGTATCA+GGG | + | chr1.4:69127373-69127392 | None:intergenic | 25.0% |
| ! | GTTCATATATATTTCACATG+CGG | - | chr1.4:69126803-69126822 | MS.gene07325:intron | 25.0% |
| ! | TATATAATCGAATACACACT+TGG | + | chr1.4:69128878-69128897 | None:intergenic | 25.0% |
| ! | TCAAAGAGAAAAAGAAAAAG+AGG | - | chr1.4:69126016-69126035 | MS.gene07325:intron | 25.0% |
| ! | TCAGTTAATTCAAACTCAAT+TGG | - | chr1.4:69128612-69128631 | MS.gene07325:CDS | 25.0% |
| ! | TCATAATTACTTAAATAGGC+CGG | - | chr1.4:69128142-69128161 | MS.gene07325:intron | 25.0% |
| ! | TGAAATGATTATTCAGTATC+AGG | + | chr1.4:69127374-69127393 | None:intergenic | 25.0% |
| !! | AAAAGCCTATTTAGCTTAAT+AGG | + | chr1.4:69128210-69128229 | None:intergenic | 25.0% |
| !! | AAAGGTTTAGAACATGTTAA+TGG | - | chr1.4:69126263-69126282 | MS.gene07325:CDS | 25.0% |
| !! | AAATTACATGTTCTTTTGCT+GGG | - | chr1.4:69126554-69126573 | MS.gene07325:intron | 25.0% |
| !! | ATAATCAACATGAGTTTTCA+GGG | - | chr1.4:69127957-69127976 | MS.gene07325:intron | 25.0% |
| !! | TAAATTACATGTTCTTTTGC+TGG | - | chr1.4:69126553-69126572 | MS.gene07325:intron | 25.0% |
| !! | TATGAAATAGGCTTTTAAAC+AGG | + | chr1.4:69127855-69127874 | None:intergenic | 25.0% |
| !! | TCAAATTCTTGTGATGTTTT+TGG | - | chr1.4:69126206-69126225 | MS.gene07325:CDS | 25.0% |
| !! | TGAATGTAATCTAGAATTGT+TGG | - | chr1.4:69126235-69126254 | MS.gene07325:CDS | 25.0% |
| !!! | GCTTTTTTCTTAAATAGAGA+AGG | + | chr1.4:69128246-69128265 | None:intergenic | 25.0% |
| !!! | TAGTTGTTTTATAGCTATGA+GGG | - | chr1.4:69127343-69127362 | MS.gene07325:intron | 25.0% |
| !!! | TTAGTTGTTTTATAGCTATG+AGG | - | chr1.4:69127342-69127361 | MS.gene07325:intron | 25.0% |
| !!! | TTTTGAAATCAAATCTGCAT+AGG | - | chr1.4:69127187-69127206 | MS.gene07325:intron | 25.0% |
| AAAGAATATCAACAAGTCCT+TGG | + | chr1.4:69127555-69127574 | None:intergenic | 30.0% | |
| AATGGGGTTATGAATTTAGA+TGG | - | chr1.4:69126137-69126156 | MS.gene07325:intron | 30.0% | |
| AGAGATTCAACTTCAAAGAA+TGG | - | chr1.4:69126098-69126117 | MS.gene07325:intron | 30.0% | |
| AGATATAGAGGATATCACTT+GGG | - | chr1.4:69127080-69127099 | MS.gene07325:intron | 30.0% | |
| ATATACAAATCTTTCTGCCA+TGG | - | chr1.4:69126490-69126509 | MS.gene07325:intron | 30.0% | |
| CATATGCTTACATCTCAAAT+TGG | - | chr1.4:69126667-69126686 | MS.gene07325:intron | 30.0% | |
| CTCTATTTAAGAAAAAAGCC+TGG | - | chr1.4:69128247-69128266 | MS.gene07325:intron | 30.0% | |
| CTTAAGATTGATGTTAGTTG+TGG | + | chr1.4:69127002-69127021 | None:intergenic | 30.0% | |
| GAAAAAAATAGTGATGACCA+TGG | + | chr1.4:69126510-69126529 | None:intergenic | 30.0% | |
| GAACATGTTAATGGAAATCA+TGG | - | chr1.4:69126272-69126291 | MS.gene07325:intron | 30.0% | |
| GAATTTAGATGGATCAGAAA+AGG | - | chr1.4:69126148-69126167 | MS.gene07325:CDS | 30.0% | |
| GTAATTCACAATTACAGAAG+TGG | + | chr1.4:69127481-69127500 | None:intergenic | 30.0% | |
| GTTGAATTTGACATTGAAAG+TGG | - | chr1.4:69126038-69126057 | MS.gene07325:intron | 30.0% | |
| TAGATATAGAGGATATCACT+TGG | - | chr1.4:69127079-69127098 | MS.gene07325:intron | 30.0% | |
| TAGTCATCACATAGATATAG+AGG | - | chr1.4:69127068-69127087 | MS.gene07325:intron | 30.0% | |
| TCATTTCACATTATACAGAG+TGG | - | chr1.4:69127386-69127405 | MS.gene07325:intron | 30.0% | |
| TCATTTGTCTATATTGATGC+AGG | - | chr1.4:69128985-69129004 | MS.gene07325:CDS | 30.0% | |
| TCTATATCTATGTGATGACT+AGG | + | chr1.4:69127069-69127088 | None:intergenic | 30.0% | |
| TGATATAGAACACAAGAATC+AGG | + | chr1.4:69126865-69126884 | None:intergenic | 30.0% | |
| TGGTGATCATAAATTTGTGA+AGG | - | chr1.4:69126373-69126392 | MS.gene07325:intron | 30.0% | |
| TGTGTTTCATAGAGGATAAT+TGG | - | chr1.4:69128500-69128519 | MS.gene07325:CDS | 30.0% | |
| TGTTCAATCAAGATTGAAGA+AGG | + | chr1.4:69127503-69127522 | None:intergenic | 30.0% | |
| TTAGTTAAGACTTTCCTTTC+AGG | - | chr1.4:69128713-69128732 | MS.gene07325:CDS | 30.0% | |
| TTCTGCTACATCTCAAAATA+TGG | - | chr1.4:69126960-69126979 | MS.gene07325:intron | 30.0% | |
| TTTATCCTTATCGTTGCATA+GGG | + | chr1.4:69128336-69128355 | None:intergenic | 30.0% | |
| ! | AATTCTTGTGTTAAGTTGCA+AGG | - | chr1.4:69126890-69126909 | MS.gene07325:intron | 30.0% |
| ! | ATGTAATCTAGAATTGTTGG+TGG | - | chr1.4:69126238-69126257 | MS.gene07325:CDS | 30.0% |
| ! | GATAATCAACATGAGTTTTC+AGG | - | chr1.4:69127956-69127975 | MS.gene07325:intron | 30.0% |
| !! | ATAGGCTTTTAAAAAAGCCT+AGG | - | chr1.4:69128220-69128239 | MS.gene07325:intron | 30.0% |
| !! | ATTATACAGAGTGGATTTTG+TGG | - | chr1.4:69127395-69127414 | MS.gene07325:intron | 30.0% |
| !!! | TTGTCATAGGCTTACTTTTT+AGG | - | chr1.4:69127789-69127808 | MS.gene07325:intron | 30.0% |
| ACTACTTTGTTGAAGTGGAT+GGG | - | chr1.4:69127685-69127704 | MS.gene07325:intron | 35.0% | |
| CAATGTCAGATGAGTTTGAT+AGG | + | chr1.4:69128556-69128575 | None:intergenic | 35.0% | |
| CATTTGTCTTGAATCTGCAA+TGG | - | chr1.4:69127311-69127330 | MS.gene07325:intron | 35.0% | |
| GATATAGAGGATATCACTTG+GGG | - | chr1.4:69127081-69127100 | MS.gene07325:intron | 35.0% | |
| GCATAAAGGACACTAACATA+TGG | - | chr1.4:69127658-69127677 | MS.gene07325:intron | 35.0% | |
| GGATCAGAAAAGGGTAAAAA+TGG | - | chr1.4:69126158-69126177 | MS.gene07325:CDS | 35.0% | |
| GTCCTTTATGCTACAACTTT+AGG | + | chr1.4:69127649-69127668 | None:intergenic | 35.0% | |
| GTGTTGAATGTAACATGTGT+CGG | + | chr1.4:69128411-69128430 | None:intergenic | 35.0% | |
| GTTTATCCTTATCGTTGCAT+AGG | + | chr1.4:69128337-69128356 | None:intergenic | 35.0% | |
| TACTACTTTGTTGAAGTGGA+TGG | - | chr1.4:69127684-69127703 | MS.gene07325:intron | 35.0% | |
| TAGAGGATAATTGGATGTCT+AGG | - | chr1.4:69128509-69128528 | MS.gene07325:CDS | 35.0% | |
| TGCTGTAATCAATGCTCATT+TGG | - | chr1.4:69126590-69126609 | MS.gene07325:intron | 35.0% | |
| TTCCTCGTCATCATATTTCA+CGG | - | chr1.4:69126530-69126549 | MS.gene07325:intron | 35.0% | |
| TTCTTAAATAGAGAAGGCCT+AGG | + | chr1.4:69128240-69128259 | None:intergenic | 35.0% | |
| TTTAAGAAAAAAGCCTGGCA+TGG | - | chr1.4:69128252-69128271 | MS.gene07325:intron | 35.0% | |
| TTTGTATATGTCGAAGACGA+CGG | + | chr1.4:69126479-69126498 | None:intergenic | 35.0% | |
| ! | ACAGCTTCAATCAAAAGTGT+AGG | + | chr1.4:69128369-69128388 | None:intergenic | 35.0% |
| ! | AGCCATTCAAAAAGCCTTTT+TGG | + | chr1.4:69128177-69128196 | None:intergenic | 35.0% |
| ! | CTAGAATTGTTGGTGGATAA+AGG | - | chr1.4:69126245-69126264 | MS.gene07325:CDS | 35.0% |
| ! | CTTCAAAGAATGGTTTTCCT+TGG | - | chr1.4:69126108-69126127 | MS.gene07325:intron | 35.0% |
| ! | GCTTAGGCCTTCTAAAAAAT+TGG | + | chr1.4:69127757-69127776 | None:intergenic | 35.0% |
| !! | AAAAGCCTTTTTGGCCTATT+AGG | + | chr1.4:69128168-69128187 | None:intergenic | 35.0% |
| !! | TGAGCATTGATTACAGCATA+TGG | + | chr1.4:69126588-69126607 | None:intergenic | 35.0% |
| AGTAACTTACTACAGTGCCA+AGG | - | chr1.4:69127535-69127554 | MS.gene07325:intron | 40.0% | |
| CCTGGCCTATTAAGCTAAAT+AGG | - | chr1.4:69128202-69128221 | MS.gene07325:intron | 40.0% | |
| CTATATTGATGCAGGTATGC+AGG | - | chr1.4:69128993-69129012 | MS.gene07325:CDS | 40.0% | |
| GGCCTAAAGTTGTAGCATAA+AGG | - | chr1.4:69127644-69127663 | MS.gene07325:intron | 40.0% | |
| GTCGTACTACTTTGTTGAAG+TGG | - | chr1.4:69127680-69127699 | MS.gene07325:intron | 40.0% | |
| TCCATGTCTGTGTTTCATAG+AGG | - | chr1.4:69128492-69128511 | MS.gene07325:CDS | 40.0% | |
| TCCTCTATGAAACACAGACA+TGG | + | chr1.4:69128496-69128515 | None:intergenic | 40.0% | |
| TCGCAGATTTGATTCCTGAA+AGG | + | chr1.4:69128730-69128749 | None:intergenic | 40.0% | |
| TTGTTGAAGTGGATGGGAAT+AGG | - | chr1.4:69127691-69127710 | MS.gene07325:intron | 40.0% | |
| ! | AAGGCTTTTTGAATGGCTTG+TGG | - | chr1.4:69128179-69128198 | MS.gene07325:intron | 40.0% |
| ! | AGAATGGTTTTCCTTGGTCA+TGG | - | chr1.4:69126114-69126133 | MS.gene07325:intron | 40.0% |
| ! | AGGCCTTCTAAAAAATTGGC+AGG | + | chr1.4:69127753-69127772 | None:intergenic | 40.0% |
| ! | CCTATTTAGCTTAATAGGCC+AGG | + | chr1.4:69128205-69128224 | None:intergenic | 40.0% |
| ! | CTTTTCCAAAGCTGTGCAAT+GGG | - | chr1.4:69128901-69128920 | MS.gene07325:CDS | 40.0% |
| ! | GGCCAAAAAGGCTTTTTGAA+TGG | - | chr1.4:69128172-69128191 | MS.gene07325:intron | 40.0% |
| ! | GTTTTCCTTGGTCATGGAAT+GGG | - | chr1.4:69126120-69126139 | MS.gene07325:intron | 40.0% |
| ! | TACCGTGAAATATGATGACG+AGG | + | chr1.4:69126535-69126554 | None:intergenic | 40.0% |
| ! | TCTTTTCCAAAGCTGTGCAA+TGG | - | chr1.4:69128900-69128919 | MS.gene07325:CDS | 40.0% |
| ! | TGTTGTCTTTCTGCTCTGAA+AGG | - | chr1.4:69127622-69127641 | MS.gene07325:intron | 40.0% |
| ! | TTCTAAAAAATTGGCAGGCC+AGG | + | chr1.4:69127748-69127767 | None:intergenic | 40.0% |
| ! | TTTTCCTTGGTCATGGAATG+GGG | - | chr1.4:69126121-69126140 | MS.gene07325:intron | 40.0% |
| ! | TTTTTCCCATTGCACAGCTT+TGG | + | chr1.4:69128909-69128928 | None:intergenic | 40.0% |
| !! | GTTGTCTTTCTGCTCTGAAA+GGG | - | chr1.4:69127623-69127642 | MS.gene07325:intron | 40.0% |
| !!! | TGGCCTGCCAATTTTTTAGA+AGG | - | chr1.4:69127747-69127766 | MS.gene07325:intron | 40.0% |
| !!! | TTTTTTAGAAGGCCTAAGCC+TGG | - | chr1.4:69127758-69127777 | MS.gene07325:intron | 40.0% |
| AAGCCTTACAAAGCCTAGCT+CGG | + | chr1.4:69127722-69127741 | None:intergenic | 45.0% | |
| AATTAGCTGAGCTTGCGTTG+AGG | - | chr1.4:69126396-69126415 | MS.gene07325:intron | 45.0% | |
| ACGAACTTCAACACCAGCAA+TGG | - | chr1.4:69128830-69128849 | MS.gene07325:CDS | 45.0% | |
| ACGACACGACACTAACACAT+CGG | + | chr1.4:69128461-69128480 | None:intergenic | 45.0% | |
| ATAACCCCATTCCATGACCA+AGG | + | chr1.4:69126128-69126147 | None:intergenic | 45.0% | |
| ATTGATGCAGGTATGCAGGA+AGG | - | chr1.4:69128997-69129016 | MS.gene07325:CDS | 45.0% | |
| CATGCGGCTCTTCTAACATT+TGG | - | chr1.4:69126819-69126838 | MS.gene07325:intron | 45.0% | |
| CCTTATCGTTGCATAGGGAT+GGG | + | chr1.4:69128331-69128350 | None:intergenic | 45.0% | |
| CTTAAATAGGCCGGCCTAAT+AGG | - | chr1.4:69128151-69128170 | MS.gene07325:intron | 45.0% | |
| TCCTTATCGTTGCATAGGGA+TGG | + | chr1.4:69128332-69128351 | None:intergenic | 45.0% | |
| TGATCACCAGCATCCAAAGA+TGG | + | chr1.4:69126362-69126381 | None:intergenic | 45.0% | |
| ! | AGGCTTTTAAACAGGCTAGC+AGG | + | chr1.4:69127847-69127866 | None:intergenic | 45.0% |
| ! | GGTTTTCCTTGGTCATGGAA+TGG | - | chr1.4:69126119-69126138 | MS.gene07325:intron | 45.0% |
| ! | TTGCTGGTGTTGAAGTTCGT+AGG | + | chr1.4:69128830-69128849 | None:intergenic | 45.0% |
| !! | TTTTTGAATGGCTTGTGGCC+TGG | - | chr1.4:69128184-69128203 | MS.gene07325:intron | 45.0% |
| !!! | TTACTTTTTAGGCCTGAGCC+TGG | - | chr1.4:69127800-69127819 | MS.gene07325:intron | 45.0% |
| ACACTTGGAAAGTGAGAGCC+AGG | + | chr1.4:69128863-69128882 | None:intergenic | 50.0% | |
| ACCAGCAATGGAGATGAACC+TGG | - | chr1.4:69128842-69128861 | MS.gene07325:CDS | 50.0% | |
| AGAGGTCCATCTTTGGATGC+TGG | - | chr1.4:69126353-69126372 | MS.gene07325:intron | 50.0% | |
| CCCATCCCTATGCAACGATA+AGG | - | chr1.4:69128328-69128347 | MS.gene07325:intron | 50.0% | |
| CGTTGCATAGGGATGGGAAT+AGG | + | chr1.4:69128325-69128344 | None:intergenic | 50.0% | |
| GAAGTGGATGGGAATAGGCT+GGG | - | chr1.4:69127696-69127715 | MS.gene07325:intron | 50.0% | |
| GCATCCAAAGATGGACCTCT+AGG | + | chr1.4:69126353-69126372 | None:intergenic | 50.0% | |
| TAGCATAGCGCTGCCTGTAT+CGG | - | chr1.4:69126768-69126787 | MS.gene07325:intron | 50.0% | |
| TAGTGTCGTGTCGTCGTGTT+AGG | - | chr1.4:69128467-69128486 | MS.gene07325:intron | 50.0% | |
| TATCAGGCTTTCAGAAGGCC+AGG | + | chr1.4:69127821-69127840 | None:intergenic | 50.0% | |
| TCAGCTGTTGCATCAGACGA+AGG | - | chr1.4:69128785-69128804 | MS.gene07325:CDS | 50.0% | |
| TCCAAAGATGGACCTCTAGG+AGG | + | chr1.4:69126350-69126369 | None:intergenic | 50.0% | |
| TGAAGTGGATGGGAATAGGC+TGG | - | chr1.4:69127695-69127714 | MS.gene07325:intron | 50.0% | |
| TGGTGAAAACACGAGCGAAG+AGG | - | chr1.4:69126058-69126077 | MS.gene07325:intron | 50.0% | |
| ! | CCAAGCCAATGTACCGATAC+AGG | + | chr1.4:69126784-69126803 | None:intergenic | 50.0% |
| ! | CCTGTATCGGTACATTGGCT+TGG | - | chr1.4:69126781-69126800 | MS.gene07325:intron | 50.0% |
| ! | CTGATGCAACAGCTGACTCA+GGG | + | chr1.4:69128781-69128800 | None:intergenic | 50.0% |
| ! | GGCCTTCTGAAAGCCTGATA+CGG | - | chr1.4:69127821-69127840 | MS.gene07325:intron | 50.0% |
| ! | TCTGATGCAACAGCTGACTC+AGG | + | chr1.4:69128782-69128801 | None:intergenic | 50.0% |
| ! | TGATGCAACAGCTGACTCAG+GGG | + | chr1.4:69128780-69128799 | None:intergenic | 50.0% |
| !! | GCCTTTTTGGCCTATTAGGC+CGG | + | chr1.4:69128164-69128183 | None:intergenic | 50.0% |
| !!! | GGTGGCTTTTGAGGCTTTCT+TGG | + | chr1.4:69126323-69126342 | None:intergenic | 50.0% |
| AAGCCACCTTTGCCTCCTAG+AGG | - | chr1.4:69126335-69126354 | MS.gene07325:intron | 55.0% | |
| CATAGGGATGGGAATAGGCC+AGG | + | chr1.4:69128320-69128339 | None:intergenic | 55.0% | |
| CTGCGAGTAGTGCGTCTGTT+GGG | - | chr1.4:69128744-69128763 | MS.gene07325:CDS | 55.0% | |
| GAAAAAAGCCTGGCATGGCC+TGG | - | chr1.4:69128257-69128276 | MS.gene07325:intron | 55.0% | |
| GCCAGGTTCATCTCCATTGC+TGG | + | chr1.4:69128846-69128865 | None:intergenic | 55.0% | |
| GCCGGCCTAATAGGCCAAAA+AGG | - | chr1.4:69128160-69128179 | MS.gene07325:intron | 55.0% | |
| GCCTCCTAGAGGTCCATCTT+TGG | - | chr1.4:69126346-69126365 | MS.gene07325:intron | 55.0% | |
| GGCCGTATCAGGCTTTCAGA+AGG | + | chr1.4:69127826-69127845 | None:intergenic | 55.0% | |
| GTAAGCCTATGACAAGCCGC+AGG | + | chr1.4:69127784-69127803 | None:intergenic | 55.0% | |
| GTCGGACACTGACACGTGTT+AGG | + | chr1.4:69128393-69128412 | None:intergenic | 55.0% | |
| TCTGCGAGTAGTGCGTCTGT+TGG | - | chr1.4:69128743-69128762 | MS.gene07325:CDS | 55.0% | |
| ! | CGCTGCCTGTATCGGTACAT+TGG | - | chr1.4:69126776-69126795 | MS.gene07325:intron | 55.0% |
| ! | GATGGACCTCTAGGAGGCAA+AGG | + | chr1.4:69126344-69126363 | None:intergenic | 55.0% |
| ! | GGAGGCAAAGGTGGCTTTTG+AGG | + | chr1.4:69126332-69126351 | None:intergenic | 55.0% |
| ! | GGCTTTGTAAGGCTTGAGCC+TGG | - | chr1.4:69127727-69127746 | MS.gene07325:intron | 55.0% |
| ACAGGCTAGCAGGCCGTATC+AGG | + | chr1.4:69127837-69127856 | None:intergenic | 60.0% | |
| CCTATGGCCTAGCCTACGAC+AGG | + | chr1.4:69128283-69128302 | None:intergenic | 60.0% | |
| CCTGTCGTAGGCTAGGCCAT+AGG | - | chr1.4:69128280-69128299 | MS.gene07325:intron | 60.0% | |
| GCTTTCAGAAGGCCAGGCTC+AGG | + | chr1.4:69127815-69127834 | None:intergenic | 60.0% | |
| ! | GGACCTCTAGGAGGCAAAGG+TGG | + | chr1.4:69126341-69126360 | None:intergenic | 60.0% |
| ! | GGGCCGAGCTAGGCTTTGTA+AGG | - | chr1.4:69127716-69127735 | MS.gene07325:intron | 60.0% |
| ! | TTGCGTTGAGGAAGCGTGCG+AGG | - | chr1.4:69126408-69126427 | MS.gene07325:intron | 60.0% |
| AATAGGCCAGGCCGGCCTAC+AGG | + | chr1.4:69128308-69128327 | None:intergenic | 65.0% | |
| ACAAGCCGCAGGCCAGGCTT+AGG | + | chr1.4:69127773-69127792 | None:intergenic | 65.0% | |
| ATAGGCCAGGCCGGCCTACA+GGG | + | chr1.4:69128307-69128326 | None:intergenic | 65.0% | |
| CCTATGACAAGCCGCAGGCC+AGG | + | chr1.4:69127779-69127798 | None:intergenic | 65.0% | |
| CCTGGCCTGCGGCTTGTCAT+AGG | - | chr1.4:69127776-69127795 | MS.gene07325:intron | 65.0% | |
| GAAGGCCTAAGCCTGGCCTG+CGG | - | chr1.4:69127765-69127784 | MS.gene07325:intron | 65.0% | |
| GCTAGGCCATAGGCCCCTGT+AGG | - | chr1.4:69128290-69128309 | MS.gene07325:intron | 65.0% | |
| GGAATAGGCTGGGCCGAGCT+AGG | - | chr1.4:69127706-69127725 | MS.gene07325:intron | 65.0% | |
| GGGATGGGAATAGGCCAGGC+CGG | + | chr1.4:69128316-69128335 | None:intergenic | 65.0% | |
| ACGACAGGCCAGGCCATGCC+AGG | + | chr1.4:69128268-69128287 | None:intergenic | 70.0% | |
| GGCATGGCCTGGCCTGTCGT+AGG | - | chr1.4:69128268-69128287 | MS.gene07325:intron | 70.0% | |
| GGCCATAGGCCCCTGTAGGC+CGG | - | chr1.4:69128294-69128313 | MS.gene07325:intron | 70.0% | |
| GGCCTAGCCTACGACAGGCC+AGG | + | chr1.4:69128278-69128297 | None:intergenic | 70.0% | |
| GGCCTGGCCTGTCGTAGGCT+AGG | - | chr1.4:69128273-69128292 | MS.gene07325:intron | 70.0% | |
| TAGGCCAGGCCGGCCTACAG+GGG | + | chr1.4:69128306-69128325 | None:intergenic | 70.0% | |
| GGCCGGCCTACAGGGGCCTA+TGG | + | chr1.4:69128299-69128318 | None:intergenic | 75.0% | |
| TAGGCCCCTGTAGGCCGGCC+TGG | - | chr1.4:69128299-69128318 | MS.gene07325:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 69126002 | 69129023 | 69126002 | ID=MS.gene07325 |
| chr1.4 | mRNA | 69126002 | 69129023 | 69126002 | ID=MS.gene07325.t1;Parent=MS.gene07325 |
| chr1.4 | exon | 69128474 | 69129023 | 69128474 | ID=MS.gene07325.t1.exon1;Parent=MS.gene07325.t1 |
| chr1.4 | CDS | 69128474 | 69129023 | 69128474 | ID=cds.MS.gene07325.t1;Parent=MS.gene07325.t1 |
| chr1.4 | exon | 69126147 | 69126290 | 69126147 | ID=MS.gene07325.t1.exon2;Parent=MS.gene07325.t1 |
| chr1.4 | CDS | 69126147 | 69126290 | 69126147 | ID=cds.MS.gene07325.t1;Parent=MS.gene07325.t1 |
| chr1.4 | exon | 69126002 | 69126018 | 69126002 | ID=MS.gene07325.t1.exon3;Parent=MS.gene07325.t1 |
| chr1.4 | CDS | 69126002 | 69126018 | 69126002 | ID=cds.MS.gene07325.t1;Parent=MS.gene07325.t1 |
| Gene Sequence |
| Protein sequence |
