Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073757.t1 | XP_013468209.1 | 97.1 | 376 | 10 | 1 | 1 | 375 | 1 | 376 | 2.50E-202 | 714.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073757.t1 | Q93YN1 | 43.8 | 386 | 192 | 8 | 1 | 371 | 1 | 376 | 3.3e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073757.t1 | A0A072VKU5 | 97.1 | 376 | 10 | 1 | 1 | 375 | 1 | 376 | 1.8e-202 | 714.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051699 | MS.gene073757 | 0.804569 | 2.03E-49 | -1.69E-46 |
| MS.gene053963 | MS.gene073757 | 0.806238 | 9.06E-50 | -1.69E-46 |
| MS.gene054490 | MS.gene073757 | 0.801334 | 9.46E-49 | -1.69E-46 |
| MS.gene055229 | MS.gene073757 | 0.804597 | 2.00E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene073757 | 0.818421 | 1.98E-52 | -1.69E-46 |
| MS.gene058592 | MS.gene073757 | 0.80213 | 6.49E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene073757 | 0.841517 | 4.53E-58 | -1.69E-46 |
| MS.gene05985 | MS.gene073757 | -0.827727 | 1.33E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTCATCTCTCATTAATT+TGG | 0.172735 | 1.4:-53081395 | None:intergenic |
| CTTTAAAACCAACAAGATTT+TGG | 0.173671 | 1.4:-53080800 | None:intergenic |
| ACACCAAAAGTTGCAGATTT+TGG | 0.236781 | 1.4:+53081367 | MS.gene073757:CDS |
| TCCCCACAATCTGGTTCTTC+TGG | 0.242213 | 1.4:+53083724 | MS.gene073757:CDS |
| TGCAAGCTCCATCTGGAGTA+TGG | 0.282169 | 1.4:+53083759 | MS.gene073757:CDS |
| AGCCTCCACCACACTTTCTT+AGG | 0.282856 | 1.4:+53080879 | MS.gene073757:CDS |
| TGGATTTGGCTCTGTTTATA+AGG | 0.289259 | 1.4:+53080563 | MS.gene073757:CDS |
| AAAATTGGTCAAGGTGGATT+TGG | 0.293199 | 1.4:+53080549 | MS.gene073757:CDS |
| GAGGGAATTTGTTGCAGAAT+TGG | 0.322666 | 1.4:+53080755 | MS.gene073757:CDS |
| GCTCCAGAGTATGCTAGTTC+TGG | 0.336849 | 1.4:+53081560 | MS.gene073757:CDS |
| AGACCAAAATCTGCAACTTT+TGG | 0.346496 | 1.4:-53081370 | None:intergenic |
| TACATTAGCACTAAAGTTGC+AGG | 0.355938 | 1.4:+53081421 | MS.gene073757:CDS |
| GAAACGTTCAATGTCTGTAT+AGG | 0.382187 | 1.4:-53081663 | None:intergenic |
| TTTCATATCAACATTGTTGT+TGG | 0.389505 | 1.4:-53083626 | None:intergenic |
| GCTTAATACAAACTATTTAG+TGG | 0.390082 | 1.4:+53083510 | MS.gene073757:CDS |
| CATCCTTTGCAAGCTCCATC+TGG | 0.391466 | 1.4:+53083752 | MS.gene073757:CDS |
| ATAAAGCACCAAAATCTTGT+TGG | 0.398407 | 1.4:+53080792 | MS.gene073757:CDS |
| CTGAGATCAGCAACAAATCC+TGG | 0.412232 | 1.4:-53083667 | None:intergenic |
| ATGTCTCTATGTACTATATG+AGG | 0.412322 | 1.4:-53081310 | None:intergenic |
| TGAACGTTTCATTGTAGAAA+AGG | 0.419937 | 1.4:+53081676 | MS.gene073757:CDS |
| TATTAGTAGCAGATTTCAAT+TGG | 0.429518 | 1.4:-53080515 | None:intergenic |
| CTTCAACTCCTCATGGAGAT+AGG | 0.429629 | 1.4:-53081287 | None:intergenic |
| TTTCGCTTGTTTCTCTTCAT+GGG | 0.437929 | 1.4:+53080315 | MS.gene073757:CDS |
| TCAGGCTTGGGCAGCTTATG+AGG | 0.443398 | 1.4:+53083456 | MS.gene073757:intron |
| AGAGCTTCAGTTGGGAATCA+AGG | 0.444640 | 1.4:+53081230 | MS.gene073757:CDS |
| AAATCAGATGTTTATAGCTA+TGG | 0.460080 | 1.4:+53081596 | MS.gene073757:CDS |
| TTTAAAGGGTGTTGTGTTGA+AGG | 0.461629 | 1.4:+53080816 | MS.gene073757:CDS |
| AATTCTTGATCTAAATCAAC+GGG | 0.461986 | 1.4:-53083791 | None:intergenic |
| TTTACAAATTATCACTGGCT+TGG | 0.469373 | 1.4:+53081628 | MS.gene073757:CDS |
| TCAAGGAGGAATATATCTAT+TGG | 0.475777 | 1.4:+53081247 | MS.gene073757:CDS |
| GCCATAAAATTCCTCAAAGT+GGG | 0.477882 | 1.4:+53083538 | MS.gene073757:CDS |
| CTGAATCTATGAGAGGAGAG+AGG | 0.491080 | 1.4:+53080736 | MS.gene073757:CDS |
| ATAACGGACTCCCCACAATC+TGG | 0.492282 | 1.4:+53083715 | MS.gene073757:CDS |
| CTCCAGAAGAACCAGATTGT+GGG | 0.502359 | 1.4:-53083726 | None:intergenic |
| AAATAGTTTGTATTAAGCAC+TGG | 0.516789 | 1.4:-53083505 | None:intergenic |
| AGAGAAGAAAGAGCTTCAGT+TGG | 0.517892 | 1.4:+53081221 | MS.gene073757:CDS |
| CAACAATGTTGATATGAAAG+AGG | 0.518708 | 1.4:+53083630 | MS.gene073757:CDS |
| GAGAAGAAAGAGCTTCAGTT+GGG | 0.525286 | 1.4:+53081222 | MS.gene073757:CDS |
| TTTGATCACAAAATTGGTCA+AGG | 0.526208 | 1.4:+53080540 | MS.gene073757:CDS |
| TACCTAAGAAAGTGTGGTGG+AGG | 0.531610 | 1.4:-53080881 | None:intergenic |
| GCTCATGGATGGATCATTTG+TGG | 0.533071 | 1.4:+53080689 | MS.gene073757:CDS |
| GCTGAGGGAGATATTAATGA+TGG | 0.534353 | 1.4:+53080468 | MS.gene073757:CDS |
| ATATTTAGTCTATGATTACA+TGG | 0.537213 | 1.4:+53080848 | MS.gene073757:CDS |
| TATGAGGCTTCAACTCCTCA+TGG | 0.542600 | 1.4:-53081294 | None:intergenic |
| CGCAAAGTAACCCCACTTTG+AGG | 0.542991 | 1.4:-53083549 | None:intergenic |
| GCAAGCTCCATCTGGAGTAT+GGG | 0.546647 | 1.4:+53083760 | MS.gene073757:CDS |
| AGCCATAAAATTCCTCAAAG+TGG | 0.552357 | 1.4:+53083537 | MS.gene073757:CDS |
| TTTGAATGATGTAGGTTCTG+AGG | 0.553389 | 1.4:+53081198 | MS.gene073757:intron |
| CCTCCAGAAGAACCAGATTG+TGG | 0.554539 | 1.4:-53083727 | None:intergenic |
| CCACAATCTGGTTCTTCTGG+AGG | 0.555381 | 1.4:+53083727 | MS.gene073757:CDS |
| TTATATGCAGATTATGCTGA+GGG | 0.557651 | 1.4:+53080453 | MS.gene073757:intron |
| AATAAAACAAGTCAAGATAA+CGG | 0.558511 | 1.4:+53083699 | MS.gene073757:CDS |
| AATTATCACTGGCTTGGCTG+TGG | 0.566048 | 1.4:+53081634 | MS.gene073757:CDS |
| TGAATCTATGAGAGGAGAGA+GGG | 0.566172 | 1.4:+53080737 | MS.gene073757:CDS |
| TGTCCAGAACTAGCATACTC+TGG | 0.569555 | 1.4:-53081563 | None:intergenic |
| TGCAAGAAACAGCAAGACTT+AGG | 0.574987 | 1.4:+53083572 | MS.gene073757:CDS |
| TTAAAGGGGAGGCTCATGGA+TGG | 0.577255 | 1.4:+53080678 | MS.gene073757:intron |
| TTTATATGCAGATTATGCTG+AGG | 0.586530 | 1.4:+53080452 | MS.gene073757:intron |
| TGAATTTACCTAAGAAAGTG+TGG | 0.598137 | 1.4:-53080887 | None:intergenic |
| ACTCCAGATGGAGCTTGCAA+AGG | 0.604696 | 1.4:-53083755 | None:intergenic |
| GAGGTTAAGATTTCAAAACC+AGG | 0.607542 | 1.4:+53083649 | MS.gene073757:CDS |
| TCCAGAAGAACCAGATTGTG+GGG | 0.621678 | 1.4:-53083725 | None:intergenic |
| GAGGAATATATCTATTGGTG+TGG | 0.624862 | 1.4:+53081252 | MS.gene073757:CDS |
| GAGATTTCCCATACTCCAGA+TGG | 0.625616 | 1.4:-53083767 | None:intergenic |
| GTTGAGACTGAATCTATGAG+AGG | 0.630407 | 1.4:+53080729 | MS.gene073757:CDS |
| GAAAATAACAACATCAACAA+CGG | 0.631750 | 1.4:+53080343 | MS.gene073757:CDS |
| GATCACAAAATTGGTCAAGG+TGG | 0.636516 | 1.4:+53080543 | MS.gene073757:CDS |
| CCATAAAATTCCTCAAAGTG+GGG | 0.657684 | 1.4:+53083539 | MS.gene073757:CDS |
| TGCAATTTCCTATCTCCATG+AGG | 0.674960 | 1.4:+53081279 | MS.gene073757:CDS |
| ATTTACCTAAGAAAGTGTGG+TGG | 0.698385 | 1.4:-53080884 | None:intergenic |
| GCTTCAGTTGGGAATCAAGG+AGG | 0.710016 | 1.4:+53081233 | MS.gene073757:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACATTGTTTATTTAT+AGG | - | chr1.4:53081169-53081188 | None:intergenic | 10.0% |
| !! | AATTTATGATTATTATTTGA+TGG | + | chr1.4:53080630-53080649 | MS.gene073757:intron | 10.0% |
| !! | TTTAATAAAAAAATCATTAG+GGG | + | chr1.4:53081530-53081549 | MS.gene073757:intron | 10.0% |
| !! | ATATATTAGACAATTTAGAT+AGG | - | chr1.4:53083287-53083306 | None:intergenic | 15.0% |
| !! | CTATAATTATTAATCATTGT+TGG | + | chr1.4:53083103-53083122 | MS.gene073757:intron | 15.0% |
| !!! | AATAATTTTGATCACAAAAT+TGG | + | chr1.4:53080534-53080553 | MS.gene073757:CDS | 15.0% |
| !!! | TGAAATTGAAAATAGTATTT+TGG | - | chr1.4:53082512-53082531 | None:intergenic | 15.0% |
| !!! | TTAACCAATAACAATTTTAT+TGG | + | chr1.4:53083373-53083392 | MS.gene073757:intron | 15.0% |
| !! | AATAAAACAAGTCAAGATAA+CGG | + | chr1.4:53083699-53083718 | MS.gene073757:CDS | 20.0% |
| !! | ATATTTAGTCTATGATTACA+TGG | + | chr1.4:53080848-53080867 | MS.gene073757:CDS | 20.0% |
| !! | ATTTATACAATTGAAAGTCT+TGG | - | chr1.4:53083322-53083341 | None:intergenic | 20.0% |
| !! | CTAACCAATAAAATTGTTAT+TGG | - | chr1.4:53083380-53083399 | None:intergenic | 20.0% |
| !! | CTGTTAATTTAATATCTCAA+AGG | + | chr1.4:53082881-53082900 | MS.gene073757:intron | 20.0% |
| !!! | AAAATCTTGTTGGTTTTAAA+GGG | + | chr1.4:53080802-53080821 | MS.gene073757:CDS | 20.0% |
| !!! | AAATGCATGCTTTTTTTTTT+GGG | + | chr1.4:53082069-53082088 | MS.gene073757:intron | 20.0% |
| !!! | AATTTTTTTTTTTTGGTTCC+CGG | - | chr1.4:53082206-53082225 | None:intergenic | 20.0% |
| !!! | ATAAACAATGTTTTTTGTTG+TGG | + | chr1.4:53081173-53081192 | MS.gene073757:intron | 20.0% |
| !!! | ATTTTTTTTTTTTTGTGGCT+GGG | - | chr1.4:53082372-53082391 | None:intergenic | 20.0% |
| !!! | CAATAACAATTTTATTGGTT+AGG | + | chr1.4:53083378-53083397 | MS.gene073757:intron | 20.0% |
| !!! | CTTTGAGATATTAAATTAAC+AGG | - | chr1.4:53082883-53082902 | None:intergenic | 20.0% |
| !!! | GTTGGATTTTTTTTTTTTTG+TGG | - | chr1.4:53082377-53082396 | None:intergenic | 20.0% |
| !!! | TATGTTAAGATTTTGTAAAG+TGG | + | chr1.4:53083405-53083424 | MS.gene073757:intron | 20.0% |
| !!! | TCTGTCTATAAGAATATTTT+TGG | - | chr1.4:53081341-53081360 | None:intergenic | 20.0% |
| !!! | TGCTTGGAATTTTTTTTTTT+TGG | - | chr1.4:53082213-53082232 | None:intergenic | 20.0% |
| ! | AAAAAATCCAACATAGCATT+TGG | + | chr1.4:53082385-53082404 | MS.gene073757:intron | 25.0% |
| ! | AAAAATCATTAGGGGTTATT+TGG | + | chr1.4:53081538-53081557 | MS.gene073757:intron | 25.0% |
| ! | AAATCAGATGTTTATAGCTA+TGG | + | chr1.4:53081596-53081615 | MS.gene073757:CDS | 25.0% |
| ! | AAGTATCACTAATTAAACGT+TGG | - | chr1.4:53082040-53082059 | None:intergenic | 25.0% |
| ! | ATTAAATTAACAGGCTGAAA+AGG | - | chr1.4:53082874-53082893 | None:intergenic | 25.0% |
| ! | CATAAAATATGTAAGATCTG+GGG | + | chr1.4:53082172-53082191 | MS.gene073757:intron | 25.0% |
| ! | CCATTAGTCAATGAATAAAA+AGG | - | chr1.4:53081503-53081522 | None:intergenic | 25.0% |
| ! | GAAAATAACAACATCAACAA+CGG | + | chr1.4:53080343-53080362 | MS.gene073757:CDS | 25.0% |
| ! | GACAATGCATAAAATATACA+AGG | + | chr1.4:53082295-53082314 | MS.gene073757:intron | 25.0% |
| ! | GCATAAAATATGTAAGATCT+GGG | + | chr1.4:53082171-53082190 | MS.gene073757:intron | 25.0% |
| ! | GCTTAATACAAACTATTTAG+TGG | + | chr1.4:53083510-53083529 | MS.gene073757:CDS | 25.0% |
| ! | TATTAGTAGCAGATTTCAAT+TGG | - | chr1.4:53080518-53080537 | None:intergenic | 25.0% |
| ! | TCAACAAAGTTATCATCAAA+TGG | - | chr1.4:53082589-53082608 | None:intergenic | 25.0% |
| ! | TGCATAAAATATGTAAGATC+TGG | + | chr1.4:53082170-53082189 | MS.gene073757:intron | 25.0% |
| ! | TGTTTCATCTCTCATTAATT+TGG | - | chr1.4:53081398-53081417 | None:intergenic | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr1.4:53082627-53082646 | MS.gene073757:intron | 25.0% |
| ! | TTTCATATCAACATTGTTGT+TGG | - | chr1.4:53083629-53083648 | None:intergenic | 25.0% |
| !! | AAATAGTTTGTATTAAGCAC+TGG | - | chr1.4:53083508-53083527 | None:intergenic | 25.0% |
| !! | CAAAATTCATGCTTTTACTA+TGG | + | chr1.4:53082094-53082113 | MS.gene073757:intron | 25.0% |
| !!! | AACGTGTCGATAATTATTTT+TGG | - | chr1.4:53083059-53083078 | None:intergenic | 25.0% |
| !!! | AACTACTTTTTGACAACTTT+CGG | - | chr1.4:53082712-53082731 | None:intergenic | 25.0% |
| !!! | AATTCACTATTTTTGCTAGA+AGG | - | chr1.4:53081732-53081751 | None:intergenic | 25.0% |
| !!! | ATTTGATGGAAAACTGATTT+TGG | + | chr1.4:53080644-53080663 | MS.gene073757:intron | 25.0% |
| !!! | ATTTTTTTTTTTTGGTTCCC+GGG | - | chr1.4:53082205-53082224 | None:intergenic | 25.0% |
| !!! | CAAAATCTTGTTGGTTTTAA+AGG | + | chr1.4:53080801-53080820 | MS.gene073757:CDS | 25.0% |
| !!! | CAAATGCATGCTTTTTTTTT+TGG | + | chr1.4:53082068-53082087 | MS.gene073757:intron | 25.0% |
| !!! | CCTTTTTATTCATTGACTAA+TGG | + | chr1.4:53081500-53081519 | MS.gene073757:intron | 25.0% |
| !!! | CTTTAAAACCAACAAGATTT+TGG | - | chr1.4:53080803-53080822 | None:intergenic | 25.0% |
| !!! | GATTTTTTTTTTTTTGTGGC+TGG | - | chr1.4:53082373-53082392 | None:intergenic | 25.0% |
| !!! | TTGCTTTTACAAATTATCAC+TGG | + | chr1.4:53081623-53081642 | MS.gene073757:CDS | 25.0% |
| !!! | TTTTTTTTTTTTTGTGGCTG+GGG | - | chr1.4:53082371-53082390 | None:intergenic | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr1.4:53082640-53082659 | MS.gene073757:intron | 30.0% | |
| AATAAGAAGTGAGAAACACA+AGG | - | chr1.4:53082615-53082634 | None:intergenic | 30.0% | |
| ACATAATATATGCAAGGTTC+GGG | - | chr1.4:53081964-53081983 | None:intergenic | 30.0% | |
| ACCACAAAAAAAAAAGTCCA+GGG | + | chr1.4:53082339-53082358 | MS.gene073757:intron | 30.0% | |
| ATGTCTCTATGTACTATATG+AGG | - | chr1.4:53081313-53081332 | None:intergenic | 30.0% | |
| CAACAATGTTGATATGAAAG+AGG | + | chr1.4:53083630-53083649 | MS.gene073757:CDS | 30.0% | |
| CACATAATATATGCAAGGTT+CGG | - | chr1.4:53081965-53081984 | None:intergenic | 30.0% | |
| CATAAAATATACAAGGTCTG+AGG | + | chr1.4:53082302-53082321 | MS.gene073757:intron | 30.0% | |
| GACAACACATAATATATGCA+AGG | - | chr1.4:53081970-53081989 | None:intergenic | 30.0% | |
| GTTCAATCCCAAGAAAAAAA+AGG | - | chr1.4:53081941-53081960 | None:intergenic | 30.0% | |
| TACCCATGAAAAAGACATAA+CGG | + | chr1.4:53082916-53082935 | MS.gene073757:intron | 30.0% | |
| TCAAGGAGGAATATATCTAT+TGG | + | chr1.4:53081247-53081266 | MS.gene073757:CDS | 30.0% | |
| TCTATTTATGCCTCTAACTA+AGG | + | chr1.4:53080924-53080943 | MS.gene073757:intron | 30.0% | |
| TGAACGTTTCATTGTAGAAA+AGG | + | chr1.4:53081676-53081695 | MS.gene073757:CDS | 30.0% | |
| TGAACTTAGTTCAGTTAGTA+TGG | - | chr1.4:53081992-53082011 | None:intergenic | 30.0% | |
| TGAATTTACCTAAGAAAGTG+TGG | - | chr1.4:53080890-53080909 | None:intergenic | 30.0% | |
| TTATATGCAGATTATGCTGA+GGG | + | chr1.4:53080453-53080472 | MS.gene073757:intron | 30.0% | |
| TTGATTGAACATGAATTCGA+AGG | - | chr1.4:53080955-53080974 | None:intergenic | 30.0% | |
| TTGTGTTTCTCACTTCTTAT+TGG | + | chr1.4:53082614-53082633 | MS.gene073757:intron | 30.0% | |
| TTTATATGCAGATTATGCTG+AGG | + | chr1.4:53080452-53080471 | MS.gene073757:intron | 30.0% | |
| TTTGATCACAAAATTGGTCA+AGG | + | chr1.4:53080540-53080559 | MS.gene073757:CDS | 30.0% | |
| ! | ACTTGTTTGATCATGTTTTC+AGG | + | chr1.4:53083438-53083457 | MS.gene073757:intron | 30.0% |
| ! | AGTGAATTCAGAATCACTTT+TGG | + | chr1.4:53081744-53081763 | MS.gene073757:intron | 30.0% |
| ! | ATAAAGCACCAAAATCTTGT+TGG | + | chr1.4:53080792-53080811 | MS.gene073757:CDS | 30.0% |
| ! | TTTACAAATTATCACTGGCT+TGG | + | chr1.4:53081628-53081647 | MS.gene073757:CDS | 30.0% |
| !! | TGATCTTAGCTAAGTTGATA+AGG | + | chr1.4:53082273-53082292 | MS.gene073757:intron | 30.0% |
| !! | TTGGTGGTTTGACTTTTAAA+GGG | + | chr1.4:53080663-53080682 | MS.gene073757:intron | 30.0% |
| !! | TTTGGTGGTTTGACTTTTAA+AGG | + | chr1.4:53080662-53080681 | MS.gene073757:intron | 30.0% |
| !!! | CAGTGTTTTAAAAACTGAAC+CGG | - | chr1.4:53080987-53081006 | None:intergenic | 30.0% |
| !!! | GTGTCGATAATTATTTTTGG+TGG | - | chr1.4:53083056-53083075 | None:intergenic | 30.0% |
| !!! | GTGTTGACCTTTTTTTTCTT+GGG | + | chr1.4:53081931-53081950 | MS.gene073757:intron | 30.0% |
| !!! | TATGAGGTATTGTCTGTTTT+AGG | - | chr1.4:53081102-53081121 | None:intergenic | 30.0% |
| !!! | TCGATAATTATTTTTGGTGG+CGG | - | chr1.4:53083053-53083072 | None:intergenic | 30.0% |
| !!! | TGTGTTGACCTTTTTTTTCT+TGG | + | chr1.4:53081930-53081949 | MS.gene073757:intron | 30.0% |
| !!! | TTTTTTTTTTTTGGTTCCCG+GGG | - | chr1.4:53082204-53082223 | None:intergenic | 30.0% |
| AGCCATAAAATTCCTCAAAG+TGG | + | chr1.4:53083537-53083556 | MS.gene073757:CDS | 35.0% | |
| CACCACAAAAAAAAAAGTCC+AGG | + | chr1.4:53082338-53082357 | MS.gene073757:intron | 35.0% | |
| CATAATATATGCAAGGTTCG+GGG | - | chr1.4:53081963-53081982 | None:intergenic | 35.0% | |
| CCATAAAATTCCTCAAAGTG+GGG | + | chr1.4:53083539-53083558 | MS.gene073757:CDS | 35.0% | |
| CCTCAATGGTTTCAGAAAAA+CGG | - | chr1.4:53081038-53081057 | None:intergenic | 35.0% | |
| CCTCATAAAAAACGTTGCAA+CGG | + | chr1.4:53081115-53081134 | MS.gene073757:intron | 35.0% | |
| CTAACTGAACTAAGTTCATG+AGG | + | chr1.4:53081994-53082013 | MS.gene073757:intron | 35.0% | |
| CTTAGTTAAAACAGCCTCAA+TGG | - | chr1.4:53081052-53081071 | None:intergenic | 35.0% | |
| GAAACGTTCAATGTCTGTAT+AGG | - | chr1.4:53081666-53081685 | None:intergenic | 35.0% | |
| GAAGGTTTATCCTTAGTTAG+AGG | - | chr1.4:53080937-53080956 | None:intergenic | 35.0% | |
| GAATGAACACTAGTGTCTTT+AGG | + | chr1.4:53081778-53081797 | MS.gene073757:intron | 35.0% | |
| GAGGAATATATCTATTGGTG+TGG | + | chr1.4:53081252-53081271 | MS.gene073757:CDS | 35.0% | |
| GAGGTTAAGATTTCAAAACC+AGG | + | chr1.4:53083649-53083668 | MS.gene073757:CDS | 35.0% | |
| GCCATAAAATTCCTCAAAGT+GGG | + | chr1.4:53083538-53083557 | MS.gene073757:CDS | 35.0% | |
| GTTCAATCAATTGATCTGTC+CGG | + | chr1.4:53080965-53080984 | MS.gene073757:intron | 35.0% | |
| TACATTAGCACTAAAGTTGC+AGG | + | chr1.4:53081421-53081440 | MS.gene073757:CDS | 35.0% | |
| TACGATACCAAATGCTATGT+TGG | - | chr1.4:53082395-53082414 | None:intergenic | 35.0% | |
| TTGAAAGTCTTGGATCAAGT+TGG | - | chr1.4:53083312-53083331 | None:intergenic | 35.0% | |
| TTTGAATGATGTAGGTTCTG+AGG | + | chr1.4:53081198-53081217 | MS.gene073757:intron | 35.0% | |
| ! | AAAATTGGTCAAGGTGGATT+TGG | + | chr1.4:53080549-53080568 | MS.gene073757:CDS | 35.0% |
| ! | ACACCAAAAGTTGCAGATTT+TGG | + | chr1.4:53081367-53081386 | MS.gene073757:CDS | 35.0% |
| ! | AGACCAAAATCTGCAACTTT+TGG | - | chr1.4:53081373-53081392 | None:intergenic | 35.0% |
| ! | AGGTCTTTTATAAGTCTTCG+CGG | - | chr1.4:53081082-53081101 | None:intergenic | 35.0% |
| ! | ATTTACCTAAGAAAGTGTGG+TGG | - | chr1.4:53080887-53080906 | None:intergenic | 35.0% |
| ! | TACCATAGTAAAAGCATGCT+TGG | - | chr1.4:53082229-53082248 | None:intergenic | 35.0% |
| ! | TAGTCTACTGCAGACAATTT+TGG | - | chr1.4:53081806-53081825 | None:intergenic | 35.0% |
| ! | TCTACAACCTCTGACATTTT+TGG | - | chr1.4:53083598-53083617 | None:intergenic | 35.0% |
| ! | TTCCAAGCATGCTTTTACTA+TGG | + | chr1.4:53082224-53082243 | MS.gene073757:intron | 35.0% |
| ! | TTGTGGCTTTTGAATGATGT+AGG | + | chr1.4:53081190-53081209 | MS.gene073757:intron | 35.0% |
| ! | TTTCGCTTGTTTCTCTTCAT+GGG | + | chr1.4:53080315-53080334 | MS.gene073757:CDS | 35.0% |
| !! | AAAAGTTGCAGATTTTGGTC+TGG | + | chr1.4:53081372-53081391 | MS.gene073757:CDS | 35.0% |
| !! | GTCCGTTATGTCTTTTTCAT+GGG | - | chr1.4:53082921-53082940 | None:intergenic | 35.0% |
| !! | TGATGGAAAACTGATTTTGG+TGG | + | chr1.4:53080647-53080666 | MS.gene073757:intron | 35.0% |
| !! | TGGATTTGGCTCTGTTTATA+AGG | + | chr1.4:53080563-53080582 | MS.gene073757:CDS | 35.0% |
| !! | TGGTGGTTTGACTTTTAAAG+GGG | + | chr1.4:53080664-53080683 | MS.gene073757:intron | 35.0% |
| !! | TGTCCGTTATGTCTTTTTCA+TGG | - | chr1.4:53082922-53082941 | None:intergenic | 35.0% |
| !! | TTGATCATGTTTTCAGGCTT+GGG | + | chr1.4:53083444-53083463 | MS.gene073757:intron | 35.0% |
| !! | TTTAAAGGGTGTTGTGTTGA+AGG | + | chr1.4:53080816-53080835 | MS.gene073757:CDS | 35.0% |
| !! | TTTGATCATGTTTTCAGGCT+TGG | + | chr1.4:53083443-53083462 | MS.gene073757:intron | 35.0% |
| !! | TTTTCGCTTGTTTCTCTTCA+TGG | + | chr1.4:53080314-53080333 | MS.gene073757:CDS | 35.0% |
| !!! | ACCCTGGACTTTTTTTTTTG+TGG | - | chr1.4:53082343-53082362 | None:intergenic | 35.0% |
| !!! | ACTTTTTTTTTTGTGGTGGC+CGG | - | chr1.4:53082336-53082355 | None:intergenic | 35.0% |
| !!! | CTGGACTTTTTTTTTTGTGG+TGG | - | chr1.4:53082340-53082359 | None:intergenic | 35.0% |
| ACAGGCTGAAAAGGACTATA+TGG | - | chr1.4:53082865-53082884 | None:intergenic | 40.0% | |
| ACTTAGGCCAAAAATGTCAG+AGG | + | chr1.4:53083588-53083607 | MS.gene073757:CDS | 40.0% | |
| AGAGAAGAAAGAGCTTCAGT+TGG | + | chr1.4:53081221-53081240 | MS.gene073757:CDS | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr1.4:53082650-53082669 | MS.gene073757:intron | 40.0% | |
| CAACTTGATCCAAGACTCTA+GGG | + | chr1.4:53083247-53083266 | MS.gene073757:intron | 40.0% | |
| GAGAAGAAAGAGCTTCAGTT+GGG | + | chr1.4:53081222-53081241 | MS.gene073757:CDS | 40.0% | |
| GATCACAAAATTGGTCAAGG+TGG | + | chr1.4:53080543-53080562 | MS.gene073757:CDS | 40.0% | |
| GCTGAGGGAGATATTAATGA+TGG | + | chr1.4:53080468-53080487 | MS.gene073757:CDS | 40.0% | |
| GTTGAGACTGAATCTATGAG+AGG | + | chr1.4:53080729-53080748 | MS.gene073757:CDS | 40.0% | |
| GTTTCAGAAAAACGGTGCAA+GGG | - | chr1.4:53081030-53081049 | None:intergenic | 40.0% | |
| TGAATCTATGAGAGGAGAGA+GGG | + | chr1.4:53080737-53080756 | MS.gene073757:CDS | 40.0% | |
| TGCAAGAAACAGCAAGACTT+AGG | + | chr1.4:53083572-53083591 | MS.gene073757:CDS | 40.0% | |
| TGCAATTTCCTATCTCCATG+AGG | + | chr1.4:53081279-53081298 | MS.gene073757:CDS | 40.0% | |
| !! | CCCCACTTTGAGGAATTTTA+TGG | - | chr1.4:53083542-53083561 | None:intergenic | 40.0% |
| !! | GAGGGAATTTGTTGCAGAAT+TGG | + | chr1.4:53080755-53080774 | MS.gene073757:CDS | 40.0% |
| !! | TGGTTTGACTTTTAAAGGGG+AGG | + | chr1.4:53080667-53080686 | MS.gene073757:intron | 40.0% |
| !!! | CCGTTGCAACGTTTTTTATG+AGG | - | chr1.4:53081118-53081137 | None:intergenic | 40.0% |
| !!! | CCGTTTTTCTGAAACCATTG+AGG | + | chr1.4:53081035-53081054 | MS.gene073757:intron | 40.0% |
| !!! | CTTTTTTTTTTGTGGTGGCC+GGG | - | chr1.4:53082335-53082354 | None:intergenic | 40.0% |
| !!! | TTTTTTTTTTGTGGTGGCCG+GGG | - | chr1.4:53082334-53082353 | None:intergenic | 40.0% |
| ACTTCTCTACCCTAGAGTCT+TGG | - | chr1.4:53083259-53083278 | None:intergenic | 45.0% | |
| AGAGCTTCAGTTGGGAATCA+AGG | + | chr1.4:53081230-53081249 | MS.gene073757:CDS | 45.0% | |
| CCAACTTGATCCAAGACTCT+AGG | + | chr1.4:53083246-53083265 | MS.gene073757:intron | 45.0% | |
| CCTAGAGTCTTGGATCAAGT+TGG | - | chr1.4:53083249-53083268 | None:intergenic | 45.0% | |
| CTCCAGAAGAACCAGATTGT+GGG | - | chr1.4:53083729-53083748 | None:intergenic | 45.0% | |
| CTGAATCTATGAGAGGAGAG+AGG | + | chr1.4:53080736-53080755 | MS.gene073757:CDS | 45.0% | |
| CTGAGATCAGCAACAAATCC+TGG | - | chr1.4:53083670-53083689 | None:intergenic | 45.0% | |
| CTTCAACTCCTCATGGAGAT+AGG | - | chr1.4:53081290-53081309 | None:intergenic | 45.0% | |
| CTTCGTGATCTTAGCTCAGT+TGG | + | chr1.4:53082138-53082157 | MS.gene073757:intron | 45.0% | |
| GAGATTTCCCATACTCCAGA+TGG | - | chr1.4:53083770-53083789 | None:intergenic | 45.0% | |
| GCTCATGGATGGATCATTTG+TGG | + | chr1.4:53080689-53080708 | MS.gene073757:CDS | 45.0% | |
| GGTTTCAGAAAAACGGTGCA+AGG | - | chr1.4:53081031-53081050 | None:intergenic | 45.0% | |
| TATGAGGCTTCAACTCCTCA+TGG | - | chr1.4:53081297-53081316 | None:intergenic | 45.0% | |
| TCCAGAAGAACCAGATTGTG+GGG | - | chr1.4:53083728-53083747 | None:intergenic | 45.0% | |
| TGTCCAGAACTAGCATACTC+TGG | - | chr1.4:53081566-53081585 | None:intergenic | 45.0% | |
| ! | AAGATCTGGGGTTAAAACCC+CGG | + | chr1.4:53082184-53082203 | MS.gene073757:intron | 45.0% |
| ! | CGTTGCAACGGACTTTAGTT+TGG | + | chr1.4:53081127-53081146 | MS.gene073757:intron | 45.0% |
| ! | TACCTAAGAAAGTGTGGTGG+AGG | - | chr1.4:53080884-53080903 | None:intergenic | 45.0% |
| !! | AATTATCACTGGCTTGGCTG+TGG | + | chr1.4:53081634-53081653 | MS.gene073757:CDS | 45.0% |
| !! | ACTTTTAAAGGGGAGGCTCA+TGG | + | chr1.4:53080674-53080693 | MS.gene073757:intron | 45.0% |
| !! | TAAATTATTTAAAAAATTGT+CGG | + | chr1.4:53083337-53083356 | MS.gene073757:intron | 5.0% |
| !!! | AATTAATTTTTATAGAAAAA+TGG | + | chr1.4:53082837-53082856 | MS.gene073757:intron | 5.0% |
| !!! | TTTTAATAAAAAAATCATTA+GGG | + | chr1.4:53081529-53081548 | MS.gene073757:intron | 5.0% |
| !!! | TTTTTAATAAAAAAATCATT+AGG | + | chr1.4:53081528-53081547 | MS.gene073757:intron | 5.0% |
| ACTCCAGATGGAGCTTGCAA+AGG | - | chr1.4:53083758-53083777 | None:intergenic | 50.0% | |
| AGCCTCCACCACACTTTCTT+AGG | + | chr1.4:53080879-53080898 | MS.gene073757:CDS | 50.0% | |
| CATCCTTTGCAAGCTCCATC+TGG | + | chr1.4:53083752-53083771 | MS.gene073757:CDS | 50.0% | |
| CCTCCAGAAGAACCAGATTG+TGG | - | chr1.4:53083730-53083749 | None:intergenic | 50.0% | |
| CGCAAAGTAACCCCACTTTG+AGG | - | chr1.4:53083552-53083571 | None:intergenic | 50.0% | |
| GCTCCAGAGTATGCTAGTTC+TGG | + | chr1.4:53081560-53081579 | MS.gene073757:CDS | 50.0% | |
| GCTTCAGTTGGGAATCAAGG+AGG | + | chr1.4:53081233-53081252 | MS.gene073757:CDS | 50.0% | |
| TTAAAGGGGAGGCTCATGGA+TGG | + | chr1.4:53080678-53080697 | MS.gene073757:intron | 50.0% | |
| ! | AAGGTCTGAGGTTCAAACCC+CGG | + | chr1.4:53082314-53082333 | MS.gene073757:intron | 50.0% |
| ! | AGATCTGGGGTTAAAACCCC+GGG | + | chr1.4:53082185-53082204 | MS.gene073757:intron | 50.0% |
| ! | GCAAGCTCCATCTGGAGTAT+GGG | + | chr1.4:53083760-53083779 | MS.gene073757:CDS | 50.0% |
| ! | TGCAAGCTCCATCTGGAGTA+TGG | + | chr1.4:53083759-53083778 | MS.gene073757:CDS | 50.0% |
| !! | ATAACGGACTCCCCACAATC+TGG | + | chr1.4:53083715-53083734 | MS.gene073757:CDS | 50.0% |
| !! | CCACAATCTGGTTCTTCTGG+AGG | + | chr1.4:53083727-53083746 | MS.gene073757:CDS | 50.0% |
| !! | TCCCCACAATCTGGTTCTTC+TGG | + | chr1.4:53083724-53083743 | MS.gene073757:CDS | 50.0% |
| CGGCGACAGTATAGATGGGA+CGG | - | chr1.4:53083033-53083052 | None:intergenic | 55.0% | |
| GAAAAACGGTGCAAGGGACG+CGG | - | chr1.4:53081024-53081043 | None:intergenic | 55.0% | |
| GGCGACAGTATAGATGGGAC+GGG | - | chr1.4:53083032-53083051 | None:intergenic | 55.0% | |
| GTGGCGGCGACAGTATAGAT+GGG | - | chr1.4:53083037-53083056 | None:intergenic | 55.0% | |
| TCAGGCTTGGGCAGCTTATG+AGG | + | chr1.4:53083456-53083475 | MS.gene073757:intron | 55.0% | |
| TGTGGCTGGGGTTTGAACCC+TGG | - | chr1.4:53082359-53082378 | None:intergenic | 60.0% | |
| ! | GGTGGCGGCGACAGTATAGA+TGG | - | chr1.4:53083038-53083057 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 53080299 | 53083798 | 53080299 | ID=MS.gene073757 |
| chr1.4 | mRNA | 53080299 | 53083798 | 53080299 | ID=MS.gene073757.t1;Parent=MS.gene073757 |
| chr1.4 | exon | 53080299 | 53080364 | 53080299 | ID=MS.gene073757.t1.exon1;Parent=MS.gene073757.t1 |
| chr1.4 | CDS | 53080299 | 53080364 | 53080299 | ID=cds.MS.gene073757.t1;Parent=MS.gene073757.t1 |
| chr1.4 | exon | 53080463 | 53080584 | 53080463 | ID=MS.gene073757.t1.exon2;Parent=MS.gene073757.t1 |
| chr1.4 | CDS | 53080463 | 53080584 | 53080463 | ID=cds.MS.gene073757.t1;Parent=MS.gene073757.t1 |
| chr1.4 | exon | 53080684 | 53080900 | 53080684 | ID=MS.gene073757.t1.exon3;Parent=MS.gene073757.t1 |
| chr1.4 | CDS | 53080684 | 53080900 | 53080684 | ID=cds.MS.gene073757.t1;Parent=MS.gene073757.t1 |
| chr1.4 | exon | 53081212 | 53081449 | 53081212 | ID=MS.gene073757.t1.exon4;Parent=MS.gene073757.t1 |
| chr1.4 | CDS | 53081212 | 53081449 | 53081212 | ID=cds.MS.gene073757.t1;Parent=MS.gene073757.t1 |
| chr1.4 | exon | 53081550 | 53081697 | 53081550 | ID=MS.gene073757.t1.exon5;Parent=MS.gene073757.t1 |
| chr1.4 | CDS | 53081550 | 53081697 | 53081550 | ID=cds.MS.gene073757.t1;Parent=MS.gene073757.t1 |
| chr1.4 | exon | 53083460 | 53083798 | 53083460 | ID=MS.gene073757.t1.exon6;Parent=MS.gene073757.t1 |
| chr1.4 | CDS | 53083460 | 53083798 | 53083460 | ID=cds.MS.gene073757.t1;Parent=MS.gene073757.t1 |
| Gene Sequence |
| Protein sequence |
