Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074395.t1 | XP_013461059.1 | 93 | 201 | 14 | 0 | 1 | 201 | 1 | 201 | 2.50E-95 | 358.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074395.t1 | Q9SB04 | 64.1 | 181 | 58 | 3 | 6 | 180 | 3 | 182 | 3.1e-54 | 213.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074395.t1 | A0A072V140 | 93.0 | 201 | 14 | 0 | 1 | 201 | 1 | 201 | 1.8e-95 | 358.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene074395.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052296 | MS.gene074395 | 0.804771 | 1.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065402 | MS.gene074395 | PPI |
| MS.gene47429 | MS.gene074395 | PPI |
| MS.gene029745 | MS.gene074395 | PPI |
| MS.gene065401 | MS.gene074395 | PPI |
| MS.gene051416 | MS.gene074395 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074395.t1 | MTR_3g078613 | 97.512 | 201 | 5 | 0 | 1 | 201 | 1 | 201 | 3.21e-141 | 392 |
| MS.gene074395.t1 | MTR_3g078613 | 97.015 | 201 | 5 | 1 | 1 | 201 | 1 | 200 | 1.66e-138 | 385 |
| MS.gene074395.t1 | MTR_4g106590 | 68.981 | 216 | 51 | 5 | 1 | 201 | 1 | 215 | 3.62e-90 | 263 |
| MS.gene074395.t1 | MTR_1g049100 | 61.688 | 154 | 53 | 3 | 22 | 173 | 7 | 156 | 1.73e-58 | 182 |
| MS.gene074395.t1 | MTR_5g036480 | 65.035 | 143 | 45 | 2 | 17 | 155 | 10 | 151 | 1.66e-57 | 181 |
| MS.gene074395.t1 | MTR_7g490310 | 52.761 | 163 | 67 | 3 | 18 | 171 | 4 | 165 | 1.24e-52 | 169 |
| MS.gene074395.t1 | MTR_3g093860 | 58.647 | 133 | 50 | 2 | 24 | 153 | 19 | 149 | 1.38e-49 | 158 |
| MS.gene074395.t1 | MTR_8g038620 | 54.667 | 150 | 57 | 3 | 18 | 158 | 4 | 151 | 1.09e-48 | 157 |
| MS.gene074395.t1 | MTR_3g088630 | 50.667 | 150 | 54 | 2 | 22 | 153 | 21 | 168 | 3.50e-46 | 152 |
| MS.gene074395.t1 | MTR_3g015490 | 49.390 | 164 | 70 | 4 | 20 | 174 | 1 | 160 | 6.76e-44 | 144 |
| MS.gene074395.t1 | MTR_6g007460 | 39.286 | 196 | 67 | 2 | 15 | 158 | 3 | 198 | 2.47e-37 | 129 |
| MS.gene074395.t1 | MTR_4g051330 | 46.053 | 76 | 41 | 0 | 99 | 174 | 74 | 149 | 3.64e-17 | 75.1 |
| MS.gene074395.t1 | MTR_3g092780 | 28.859 | 149 | 96 | 3 | 23 | 171 | 56 | 194 | 1.52e-13 | 68.9 |
| MS.gene074395.t1 | MTR_3g092780 | 28.859 | 149 | 96 | 3 | 23 | 171 | 56 | 194 | 1.77e-13 | 68.6 |
| MS.gene074395.t1 | MTR_3g092780 | 30.534 | 131 | 81 | 3 | 23 | 153 | 56 | 176 | 1.04e-12 | 66.2 |
| MS.gene074395.t1 | MTR_3g092780 | 30.534 | 131 | 81 | 3 | 23 | 153 | 56 | 176 | 1.22e-12 | 66.2 |
| MS.gene074395.t1 | MTR_4g061360 | 30.597 | 134 | 83 | 2 | 20 | 153 | 86 | 209 | 7.18e-12 | 63.9 |
| MS.gene074395.t1 | MTR_8g024260 | 28.682 | 129 | 82 | 2 | 25 | 153 | 38 | 156 | 8.93e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene074395.t1 | AT3G48100 | 63.736 | 182 | 59 | 3 | 5 | 180 | 2 | 182 | 1.91e-75 | 225 |
| MS.gene074395.t1 | AT1G74890 | 75.333 | 150 | 30 | 3 | 22 | 167 | 17 | 163 | 1.07e-71 | 216 |
| MS.gene074395.t1 | AT5G62920 | 74.483 | 145 | 35 | 2 | 23 | 167 | 25 | 167 | 1.51e-70 | 213 |
| MS.gene074395.t1 | AT1G19050 | 67.089 | 158 | 49 | 2 | 3 | 158 | 2 | 158 | 3.35e-69 | 210 |
| MS.gene074395.t1 | AT1G59940 | 62.857 | 175 | 45 | 5 | 1 | 158 | 1 | 172 | 1.87e-66 | 204 |
| MS.gene074395.t1 | AT1G59940 | 62.857 | 175 | 45 | 5 | 1 | 158 | 93 | 264 | 3.72e-65 | 204 |
| MS.gene074395.t1 | AT1G10470 | 66.443 | 149 | 49 | 1 | 14 | 162 | 11 | 158 | 2.05e-63 | 196 |
| MS.gene074395.t1 | AT1G10470 | 72.727 | 132 | 35 | 1 | 22 | 153 | 33 | 163 | 3.50e-63 | 196 |
| MS.gene074395.t1 | AT2G41310 | 56.667 | 150 | 56 | 3 | 21 | 162 | 7 | 155 | 3.78e-53 | 170 |
| MS.gene074395.t1 | AT3G57040 | 57.534 | 146 | 51 | 2 | 18 | 153 | 4 | 148 | 4.01e-53 | 170 |
| MS.gene074395.t1 | AT3G57040 | 57.534 | 146 | 51 | 2 | 18 | 153 | 4 | 148 | 4.01e-53 | 170 |
| MS.gene074395.t1 | AT2G40670 | 59.559 | 136 | 50 | 2 | 22 | 153 | 28 | 162 | 4.88e-53 | 167 |
| MS.gene074395.t1 | AT3G56380 | 58.647 | 133 | 54 | 1 | 22 | 153 | 19 | 151 | 1.05e-52 | 166 |
| MS.gene074395.t1 | AT2G40670 | 58.824 | 136 | 50 | 3 | 22 | 153 | 28 | 161 | 2.90e-50 | 160 |
| MS.gene074395.t1 | AT3G56380 | 57.895 | 133 | 54 | 2 | 22 | 153 | 19 | 150 | 5.86e-50 | 159 |
| MS.gene074395.t1 | AT1G10470 | 61.111 | 72 | 28 | 0 | 91 | 162 | 25 | 96 | 7.83e-23 | 90.9 |
| MS.gene074395.t1 | AT2G07440 | 52.941 | 68 | 32 | 0 | 95 | 162 | 2 | 69 | 1.13e-16 | 73.6 |
| MS.gene074395.t1 | AT5G07210 | 30.508 | 177 | 97 | 6 | 1 | 175 | 1 | 153 | 6.67e-15 | 72.8 |
| MS.gene074395.t1 | AT5G24470 | 29.771 | 131 | 82 | 3 | 23 | 153 | 50 | 170 | 2.55e-12 | 65.5 |
| MS.gene074395.t1 | AT1G67710 | 30.137 | 146 | 89 | 3 | 14 | 159 | 2 | 134 | 1.06e-11 | 63.5 |
| MS.gene074395.t1 | AT2G46790 | 27.481 | 131 | 85 | 2 | 23 | 153 | 37 | 157 | 1.79e-11 | 62.8 |
| MS.gene074395.t1 | AT2G46790 | 27.481 | 131 | 85 | 2 | 23 | 153 | 37 | 157 | 2.09e-11 | 62.4 |
| MS.gene074395.t1 | AT5G60100 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 6.63e-11 | 60.8 |
| MS.gene074395.t1 | AT5G60100 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 6.63e-11 | 60.8 |
| MS.gene074395.t1 | AT5G60100 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 6.63e-11 | 60.8 |
| MS.gene074395.t1 | AT5G60100 | 31.343 | 134 | 82 | 3 | 20 | 153 | 61 | 184 | 7.16e-11 | 60.8 |
Find 41 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGATCTTACCTATCAATT+CGG | 0.347926 | 3.4:-75140262 | None:intergenic |
| TGAATTGCTCAAGAAGATTA+AGG | 0.356380 | 3.4:+75140023 | MS.gene074395:CDS |
| ACTAGAGCTTTACAGTATCT+TGG | 0.363036 | 3.4:+75139797 | MS.gene074395:CDS |
| AGCTTTACAGTATCTTGGTT+TGG | 0.366392 | 3.4:+75139802 | MS.gene074395:CDS |
| CTACTGCTGGTGATGTTCTC+AGG | 0.387823 | 3.4:+75139527 | MS.gene074395:CDS |
| TGTTCTCAGGCAGAGTTTAC+CGG | 0.414947 | 3.4:+75139540 | MS.gene074395:CDS |
| TTCACATCTGCCAACTTGAC+AGG | 0.430476 | 3.4:-75141430 | None:intergenic |
| ATGAATCAATGGTTATAGTC+TGG | 0.434730 | 3.4:-75141614 | None:intergenic |
| ACATCTTGACCCGAATTGAT+AGG | 0.448548 | 3.4:+75140252 | MS.gene074395:CDS |
| ATGACAGATTATTCTATGCC+TGG | 0.452458 | 3.4:+75139988 | MS.gene074395:CDS |
| TATTCTATGCCTGGGATGAC+AGG | 0.453139 | 3.4:+75139997 | MS.gene074395:CDS |
| CTTAAATTCACTTCTTGCAA+AGG | 0.463478 | 3.4:+75139646 | MS.gene074395:CDS |
| ATTGACAGTTGCTTGGAAGA+AGG | 0.475916 | 3.4:+75141385 | MS.gene074395:intron |
| ACACCAGCACCACTTACTTC+CGG | 0.479536 | 3.4:-75139559 | None:intergenic |
| TTACAGTATCTTGGTTTGGA+TGG | 0.481557 | 3.4:+75139806 | MS.gene074395:CDS |
| GATGGTGACACGAGTTCCAT+TGG | 0.497003 | 3.4:+75139824 | MS.gene074395:CDS |
| AAGATCTTACCTATCAATTC+GGG | 0.507592 | 3.4:-75140261 | None:intergenic |
| TTTGTTCATTGACAGTTGCT+TGG | 0.513588 | 3.4:+75141378 | MS.gene074395:intron |
| AGAGGTGAAGGAAAGAAAGT+CGG | 0.518178 | 3.4:+75141475 | MS.gene074395:CDS |
| TTTGCTTACATCAAAACCAA+TGG | 0.528283 | 3.4:-75139840 | None:intergenic |
| TTACCGGAAGTAAGTGGTGC+TGG | 0.532656 | 3.4:+75139556 | MS.gene074395:CDS |
| GAAGTAAGTGGTGCTGGTGT+TGG | 0.533059 | 3.4:+75139562 | MS.gene074395:CDS |
| TTGATCGCAAAGTCATTGAA+AGG | 0.535022 | 3.4:+75139620 | MS.gene074395:CDS |
| GCAGTTACTGTTGTTGAGAG+TGG | 0.535906 | 3.4:+75139773 | MS.gene074395:intron |
| AATTCATATCCTGTCATCCC+AGG | 0.536075 | 3.4:-75140006 | None:intergenic |
| TTGTATTTCATCTCTATCAA+CGG | 0.543618 | 3.4:+75141534 | MS.gene074395:CDS |
| TGACAGATTATTCTATGCCT+GGG | 0.547632 | 3.4:+75139989 | MS.gene074395:CDS |
| TCAGAGGACATAACCACCAC+TGG | 0.556667 | 3.4:-75140227 | None:intergenic |
| TCTATTGAAACCTGTCAAGT+TGG | 0.561378 | 3.4:+75141420 | MS.gene074395:CDS |
| TTCTTTGACGACATTGCAGA+CGG | 0.571495 | 3.4:-75141589 | None:intergenic |
| GGTGAAGGAAAGAAAGTCGG+AGG | 0.571633 | 3.4:+75141478 | MS.gene074395:CDS |
| AGAGTTGCACGTTCTTGCAG+TGG | 0.580799 | 3.4:+75139585 | MS.gene074395:CDS |
| ATTTAGAGAAATTCCAGTGG+TGG | 0.593101 | 3.4:+75140214 | MS.gene074395:CDS |
| GATTTCATAATGAGAGGTGA+AGG | 0.593144 | 3.4:+75141463 | MS.gene074395:CDS |
| TTAACAGATTTCATAATGAG+AGG | 0.593540 | 3.4:+75141457 | MS.gene074395:CDS |
| GACATTGCAGACGGTGACAA+TGG | 0.595350 | 3.4:-75141580 | None:intergenic |
| CAGAGTTTACCGGAAGTAAG+TGG | 0.596307 | 3.4:+75139550 | MS.gene074395:CDS |
| TTGCTTGGAAGAAGGAGCAG+AGG | 0.596704 | 3.4:+75141393 | MS.gene074395:CDS |
| AATATGGTTACAGGGTGTGA+AGG | 0.609461 | 3.4:+75139954 | MS.gene074395:intron |
| TGTATTTAGAGAAATTCCAG+TGG | 0.707997 | 3.4:+75140211 | MS.gene074395:CDS |
| TCGGGTCAAGATGTTCTCAG+AGG | 0.723155 | 3.4:-75140243 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAGAATTGCAT+AGG | - | chr3.4:75140417-75140436 | None:intergenic | 15.0% |
| !! | AACACATAAAAAAATTCAAA+AGG | - | chr3.4:75139697-75139716 | None:intergenic | 15.0% |
| !! | ACACATAAAAAAATTCAAAA+GGG | - | chr3.4:75139696-75139715 | None:intergenic | 15.0% |
| !!! | ATTAAAGACATGTATATTTT+TGG | + | chr3.4:75140453-75140472 | MS.gene074395:intron | 15.0% |
| !!! | TGAATTTTTTTATGTGTTTT+TGG | + | chr3.4:75139699-75139718 | MS.gene074395:intron | 15.0% |
| !! | AAACAATACTAATTCAAAAG+AGG | - | chr3.4:75140301-75140320 | None:intergenic | 20.0% |
| !! | AAAGATCTCAATATCTAATT+AGG | + | chr3.4:75140691-75140710 | MS.gene074395:intron | 20.0% |
| !! | AAATATCTCAAAAAAGAAGT+CGG | + | chr3.4:75141503-75141522 | MS.gene074395:CDS | 20.0% |
| !! | ATAATTTCAGGAATAAAAGT+AGG | - | chr3.4:75141196-75141215 | None:intergenic | 20.0% |
| !! | ATGATCAATAAATATGAAAC+AGG | - | chr3.4:75141353-75141372 | None:intergenic | 20.0% |
| !! | GTCTTTAATACAAAAACTAA+AGG | - | chr3.4:75140442-75140461 | None:intergenic | 20.0% |
| !!! | GATTAGTTATAGTTACATAT+TGG | + | chr3.4:75140373-75140392 | MS.gene074395:intron | 20.0% |
| !!! | TTCTTGTGTTTTTTTTTTTG+AGG | + | chr3.4:75139887-75139906 | MS.gene074395:intron | 20.0% |
| ! | AATCCTTTCACTAAAATGAT+AGG | + | chr3.4:75140919-75140938 | MS.gene074395:intron | 25.0% |
| ! | AATCTCAGCTAAAAAACAAT+AGG | - | chr3.4:75140332-75140351 | None:intergenic | 25.0% |
| ! | ATCCATTTGTGAAATATGTA+TGG | + | chr3.4:75140500-75140519 | MS.gene074395:intron | 25.0% |
| ! | CAATCTAATCTAATCTAATC+AGG | - | chr3.4:75140121-75140140 | None:intergenic | 25.0% |
| ! | CTCAATATCTAATTAGGTTT+AGG | + | chr3.4:75140697-75140716 | MS.gene074395:intron | 25.0% |
| ! | GTGAAATATGTATGGTATAT+GGG | + | chr3.4:75140508-75140527 | MS.gene074395:intron | 25.0% |
| ! | TAACATGGTGATATTATTGA+GGG | - | chr3.4:75140990-75141009 | None:intergenic | 25.0% |
| ! | TACCATACATATTTCACAAA+TGG | - | chr3.4:75140505-75140524 | None:intergenic | 25.0% |
| ! | TAGAATAAGAAAAAACGTGT+GGG | - | chr3.4:75140543-75140562 | None:intergenic | 25.0% |
| ! | TATAATTGCCACACAATTAT+AGG | + | chr3.4:75141147-75141166 | MS.gene074395:intron | 25.0% |
| ! | TGATAAAACCTATAATTGTG+TGG | - | chr3.4:75141158-75141177 | None:intergenic | 25.0% |
| ! | TGTGAAATATGTATGGTATA+TGG | + | chr3.4:75140507-75140526 | MS.gene074395:intron | 25.0% |
| ! | TTAACAGATTTCATAATGAG+AGG | + | chr3.4:75141457-75141476 | MS.gene074395:CDS | 25.0% |
| ! | TTGCAAAATCTTTCTACTAA+TGG | + | chr3.4:75140953-75140972 | MS.gene074395:intron | 25.0% |
| ! | TTGTATTTCATCTCTATCAA+CGG | + | chr3.4:75141534-75141553 | MS.gene074395:CDS | 25.0% |
| !! | GATTGGATTCTAATGTTTTT+CGG | + | chr3.4:75139730-75139749 | MS.gene074395:intron | 25.0% |
| !! | GTAAGCAAAGTTTCTAATTT+TGG | + | chr3.4:75139854-75139873 | MS.gene074395:intron | 25.0% |
| !! | GTATTTTCAGTTTTTGTGTT+TGG | + | chr3.4:75139909-75139928 | MS.gene074395:intron | 25.0% |
| !! | TTTTGATGAATATGGTTACA+GGG | + | chr3.4:75139946-75139965 | MS.gene074395:intron | 25.0% |
| !!! | TAACCTATCATTTTAGTGAA+AGG | - | chr3.4:75140925-75140944 | None:intergenic | 25.0% |
| !!! | TCATTTTAGTGAAAGGATTT+TGG | - | chr3.4:75140918-75140937 | None:intergenic | 25.0% |
| !!! | TGTTGTTGTTTTGATGAATA+TGG | + | chr3.4:75139938-75139957 | MS.gene074395:intron | 25.0% |
| !!! | TTATGTGTTTTTGGTTCATT+TGG | + | chr3.4:75139708-75139727 | MS.gene074395:intron | 25.0% |
| !!! | TTATTTCTGTTAATTTCAGC+AGG | + | chr3.4:75140181-75140200 | MS.gene074395:intron | 25.0% |
| AAGATCTTACCTATCAATTC+GGG | - | chr3.4:75140264-75140283 | None:intergenic | 30.0% | |
| AAGTAAGAAACTTCCATTCA+TGG | - | chr3.4:75141325-75141344 | None:intergenic | 30.0% | |
| ACAAAAATACAACATAGCCT+TGG | - | chr3.4:75140839-75140858 | None:intergenic | 30.0% | |
| ATATCTAATTAGGTTTAGGC+TGG | + | chr3.4:75140701-75140720 | MS.gene074395:intron | 30.0% | |
| ATATTACCAATTTACCACCA+AGG | + | chr3.4:75140819-75140838 | MS.gene074395:intron | 30.0% | |
| CAAGATCTTACCTATCAATT+CGG | - | chr3.4:75140265-75140284 | None:intergenic | 30.0% | |
| CATATTGCCAATCATTAAGA+AGG | - | chr3.4:75140765-75140784 | None:intergenic | 30.0% | |
| CATTAAGCCTTCTTAATGAT+TGG | + | chr3.4:75140755-75140774 | MS.gene074395:intron | 30.0% | |
| CTAACATGGTGATATTATTG+AGG | - | chr3.4:75140991-75141010 | None:intergenic | 30.0% | |
| CTAGAATAAGAAAAAACGTG+TGG | - | chr3.4:75140544-75140563 | None:intergenic | 30.0% | |
| CTTAAATTCACTTCTTGCAA+AGG | + | chr3.4:75139646-75139665 | MS.gene074395:CDS | 30.0% | |
| GAAGGTTCAACATAACAAAA+TGG | - | chr3.4:75141228-75141247 | None:intergenic | 30.0% | |
| GAGAAAAGGGATTTATTGTT+TGG | - | chr3.4:75140883-75140902 | None:intergenic | 30.0% | |
| TGAATTGCTCAAGAAGATTA+AGG | + | chr3.4:75140023-75140042 | MS.gene074395:CDS | 30.0% | |
| TGGTGTTTGTCAATAATTTC+AGG | - | chr3.4:75141208-75141227 | None:intergenic | 30.0% | |
| TGTATTTAGAGAAATTCCAG+TGG | + | chr3.4:75140211-75140230 | MS.gene074395:CDS | 30.0% | |
| TTTGCTTACATCAAAACCAA+TGG | - | chr3.4:75139843-75139862 | None:intergenic | 30.0% | |
| ! | AAATGGATTTCATGTCTAGA+TGG | - | chr3.4:75140488-75140507 | None:intergenic | 30.0% |
| ! | AATGGATTTCATGTCTAGAT+GGG | - | chr3.4:75140487-75140506 | None:intergenic | 30.0% |
| ! | ATGAAATCCATTTTCCTACA+AGG | + | chr3.4:75141091-75141110 | MS.gene074395:intron | 30.0% |
| ! | CAAATTTGATGATCCATGAA+TGG | + | chr3.4:75141309-75141328 | MS.gene074395:intron | 30.0% |
| ! | GATGTATGTATTGATGAAAG+AGG | + | chr3.4:75140089-75140108 | MS.gene074395:intron | 30.0% |
| !! | GTTTTGATGAATATGGTTAC+AGG | + | chr3.4:75139945-75139964 | MS.gene074395:intron | 30.0% |
| !!! | CACACGTTTTTTCTTATTCT+AGG | + | chr3.4:75140542-75140561 | MS.gene074395:intron | 30.0% |
| !!! | CGTTTTTTCTTATTCTAGGT+TGG | + | chr3.4:75140546-75140565 | MS.gene074395:intron | 30.0% |
| !!! | TGTTTTTGGTTCATTTGGAT+TGG | + | chr3.4:75139713-75139732 | MS.gene074395:intron | 30.0% |
| AAATCCAAAAATAGCCATGG+TGG | + | chr3.4:75140616-75140635 | MS.gene074395:intron | 35.0% | |
| AATCCAAAAATAGCCATGGT+GGG | + | chr3.4:75140617-75140636 | MS.gene074395:intron | 35.0% | |
| ACCAAATCCAAAAATAGCCA+TGG | + | chr3.4:75140613-75140632 | MS.gene074395:intron | 35.0% | |
| ACTAGAGCTTTACAGTATCT+TGG | + | chr3.4:75139797-75139816 | MS.gene074395:CDS | 35.0% | |
| AGCTTTACAGTATCTTGGTT+TGG | + | chr3.4:75139802-75139821 | MS.gene074395:CDS | 35.0% | |
| ATGACAGATTATTCTATGCC+TGG | + | chr3.4:75139988-75140007 | MS.gene074395:CDS | 35.0% | |
| ATTTAGAGAAATTCCAGTGG+TGG | + | chr3.4:75140214-75140233 | MS.gene074395:CDS | 35.0% | |
| CATGGATCATCAAATTTGCA+AGG | - | chr3.4:75141307-75141326 | None:intergenic | 35.0% | |
| GATTTCATAATGAGAGGTGA+AGG | + | chr3.4:75141463-75141482 | MS.gene074395:CDS | 35.0% | |
| TCTATTGAAACCTGTCAAGT+TGG | + | chr3.4:75141420-75141439 | MS.gene074395:CDS | 35.0% | |
| TGACAGATTATTCTATGCCT+GGG | + | chr3.4:75139989-75140008 | MS.gene074395:CDS | 35.0% | |
| TTGATCGCAAAGTCATTGAA+AGG | + | chr3.4:75139620-75139639 | MS.gene074395:CDS | 35.0% | |
| TTTGTTCATTGACAGTTGCT+TGG | + | chr3.4:75141378-75141397 | MS.gene074395:intron | 35.0% | |
| ! | AAAATACAACATAGCCTTGG+TGG | - | chr3.4:75140836-75140855 | None:intergenic | 35.0% |
| !! | TTACAGTATCTTGGTTTGGA+TGG | + | chr3.4:75139806-75139825 | MS.gene074395:CDS | 35.0% |
| !!! | ACCATGGCTATTTTTGGATT+TGG | - | chr3.4:75140617-75140636 | None:intergenic | 35.0% |
| !!! | ATGGCTATTTTTGGATTTGG+TGG | - | chr3.4:75140614-75140633 | None:intergenic | 35.0% |
| AATAATGTTGTCATGCCAGC+AGG | - | chr3.4:75141119-75141138 | None:intergenic | 40.0% | |
| AATATGGTTACAGGGTGTGA+AGG | + | chr3.4:75139954-75139973 | MS.gene074395:intron | 40.0% | |
| AATTCATATCCTGTCATCCC+AGG | - | chr3.4:75140009-75140028 | None:intergenic | 40.0% | |
| ACATCTTGACCCGAATTGAT+AGG | + | chr3.4:75140252-75140271 | MS.gene074395:CDS | 40.0% | |
| AGAGGTGAAGGAAAGAAAGT+CGG | + | chr3.4:75141475-75141494 | MS.gene074395:CDS | 40.0% | |
| ATAATGTTGTCATGCCAGCA+GGG | - | chr3.4:75141118-75141137 | None:intergenic | 40.0% | |
| ATGATTATGATCACCCACCA+TGG | - | chr3.4:75140633-75140652 | None:intergenic | 40.0% | |
| ATTCCCTTATAAGGCTGAGA+AGG | - | chr3.4:75141246-75141265 | None:intergenic | 40.0% | |
| ATTGACAGTTGCTTGGAAGA+AGG | + | chr3.4:75141385-75141404 | MS.gene074395:intron | 40.0% | |
| CCATGTGTCTAACTCTAACA+TGG | - | chr3.4:75141005-75141024 | None:intergenic | 40.0% | |
| CCATGTTAGAGTTAGACACA+TGG | + | chr3.4:75141002-75141021 | MS.gene074395:intron | 40.0% | |
| CTCATGCACATTCCCTTATA+AGG | - | chr3.4:75141255-75141274 | None:intergenic | 40.0% | |
| TTCTTTGACGACATTGCAGA+CGG | - | chr3.4:75141592-75141611 | None:intergenic | 40.0% | |
| ! | ACATAGCCTTGGTGGTAAAT+TGG | - | chr3.4:75140828-75140847 | None:intergenic | 40.0% |
| ! | GAACCTTCTCAGCCTTATAA+GGG | + | chr3.4:75141240-75141259 | MS.gene074395:intron | 40.0% |
| ! | TGAACCTTCTCAGCCTTATA+AGG | + | chr3.4:75141239-75141258 | MS.gene074395:intron | 40.0% |
| !! | AAAGGATTTTGGCCATGTGT+TGG | - | chr3.4:75140907-75140926 | None:intergenic | 40.0% |
| AGAGTTAGACACATGGAGTG+TGG | + | chr3.4:75141009-75141028 | MS.gene074395:intron | 45.0% | |
| CAGAGTTTACCGGAAGTAAG+TGG | + | chr3.4:75139550-75139569 | MS.gene074395:CDS | 45.0% | |
| GCAGTTACTGTTGTTGAGAG+TGG | + | chr3.4:75139773-75139792 | MS.gene074395:intron | 45.0% | |
| TATTCTATGCCTGGGATGAC+AGG | + | chr3.4:75139997-75140016 | MS.gene074395:CDS | 45.0% | |
| TGTTCTCAGGCAGAGTTTAC+CGG | + | chr3.4:75139540-75139559 | MS.gene074395:CDS | 45.0% | |
| TTCACATCTGCCAACTTGAC+AGG | - | chr3.4:75141433-75141452 | None:intergenic | 45.0% | |
| ! | GCCATGTGTTGGTGAGAAAA+GGG | - | chr3.4:75140896-75140915 | None:intergenic | 45.0% |
| ! | TCCCTTTTCTCACCAACACA+TGG | + | chr3.4:75140892-75140911 | MS.gene074395:intron | 45.0% |
| !! | TCACCCACCATGGCTATTTT+TGG | - | chr3.4:75140623-75140642 | None:intergenic | 45.0% |
| ACACCAGCACCACTTACTTC+CGG | - | chr3.4:75139562-75139581 | None:intergenic | 50.0% | |
| AGAGTTGCACGTTCTTGCAG+TGG | + | chr3.4:75139585-75139604 | MS.gene074395:CDS | 50.0% | |
| GACATTGCAGACGGTGACAA+TGG | - | chr3.4:75141583-75141602 | None:intergenic | 50.0% | |
| GATGGTGACACGAGTTCCAT+TGG | + | chr3.4:75139824-75139843 | MS.gene074395:CDS | 50.0% | |
| GCAGGGTCCTTGTAGGAAAA+TGG | - | chr3.4:75141101-75141120 | None:intergenic | 50.0% | |
| GGTGAAGGAAAGAAAGTCGG+AGG | + | chr3.4:75141478-75141497 | MS.gene074395:CDS | 50.0% | |
| TCAGAGGACATAACCACCAC+TGG | - | chr3.4:75140230-75140249 | None:intergenic | 50.0% | |
| TCGGGTCAAGATGTTCTCAG+AGG | - | chr3.4:75140246-75140265 | None:intergenic | 50.0% | |
| TTACCGGAAGTAAGTGGTGC+TGG | + | chr3.4:75139556-75139575 | MS.gene074395:CDS | 50.0% | |
| TTGCTTGGAAGAAGGAGCAG+AGG | + | chr3.4:75141393-75141412 | MS.gene074395:CDS | 50.0% | |
| ! | CTACTGCTGGTGATGTTCTC+AGG | + | chr3.4:75139527-75139546 | MS.gene074395:CDS | 50.0% |
| ! | GGCCATGTGTTGGTGAGAAA+AGG | - | chr3.4:75140897-75140916 | None:intergenic | 50.0% |
| ! | GTTTAGGCTGGCACTGAATG+TGG | + | chr3.4:75140713-75140732 | MS.gene074395:intron | 50.0% |
| ! | TTTTCCTACAAGGACCCTGC+TGG | + | chr3.4:75141101-75141120 | MS.gene074395:intron | 50.0% |
| !! | GAAGTAAGTGGTGCTGGTGT+TGG | + | chr3.4:75139562-75139581 | MS.gene074395:CDS | 50.0% |
| CATGCCAGCAGGGTCCTTGT+AGG | - | chr3.4:75141108-75141127 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 75139523 | 75141624 | 75139523 | ID=MS.gene074395 |
| chr3.4 | mRNA | 75139523 | 75141624 | 75139523 | ID=MS.gene074395.t1;Parent=MS.gene074395 |
| chr3.4 | exon | 75139523 | 75139667 | 75139523 | ID=MS.gene074395.t1.exon1;Parent=MS.gene074395.t1 |
| chr3.4 | CDS | 75139523 | 75139667 | 75139523 | ID=cds.MS.gene074395.t1;Parent=MS.gene074395.t1 |
| chr3.4 | exon | 75139777 | 75139853 | 75139777 | ID=MS.gene074395.t1.exon2;Parent=MS.gene074395.t1 |
| chr3.4 | CDS | 75139777 | 75139853 | 75139777 | ID=cds.MS.gene074395.t1;Parent=MS.gene074395.t1 |
| chr3.4 | exon | 75139967 | 75140044 | 75139967 | ID=MS.gene074395.t1.exon3;Parent=MS.gene074395.t1 |
| chr3.4 | CDS | 75139967 | 75140044 | 75139967 | ID=cds.MS.gene074395.t1;Parent=MS.gene074395.t1 |
| chr3.4 | exon | 75140200 | 75140273 | 75140200 | ID=MS.gene074395.t1.exon4;Parent=MS.gene074395.t1 |
| chr3.4 | CDS | 75140200 | 75140273 | 75140200 | ID=cds.MS.gene074395.t1;Parent=MS.gene074395.t1 |
| chr3.4 | exon | 75141393 | 75141624 | 75141393 | ID=MS.gene074395.t1.exon5;Parent=MS.gene074395.t1 |
| chr3.4 | CDS | 75141393 | 75141624 | 75141393 | ID=cds.MS.gene074395.t1;Parent=MS.gene074395.t1 |
| Gene Sequence |
| Protein sequence |
