Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07703.t1 | RHN60559.1 | 97.6 | 695 | 16 | 1 | 1 | 695 | 1 | 694 | 0.00E+00 | 1288.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07703.t1 | Q3E7D0 | 71.6 | 714 | 179 | 6 | 1 | 695 | 1 | 709 | 2.1e-267 | 922.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07703.t1 | A0A396I4M7 | 97.6 | 695 | 16 | 1 | 1 | 695 | 1 | 694 | 0.0e+00 | 1288.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene07703 | MS.gene046435 | PPI |
| MS.gene07703 | MS.gene008938 | PPI |
| MS.gene07703 | MS.gene065219 | PPI |
| MS.gene07703 | MS.gene027793 | PPI |
| MS.gene07703 | MS.gene069113 | PPI |
| MS.gene07703 | MS.gene070688 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07703.t1 | MTR_4g055290 | 96.978 | 695 | 14 | 2 | 1 | 695 | 1 | 688 | 0.0 | 1367 |
| MS.gene07703.t1 | MTR_2g084895 | 80.057 | 702 | 113 | 9 | 4 | 695 | 2 | 686 | 0.0 | 1068 |
| MS.gene07703.t1 | MTR_2g103510 | 64.030 | 670 | 166 | 9 | 27 | 695 | 4 | 599 | 0.0 | 791 |
| MS.gene07703.t1 | MTR_8g068550 | 48.660 | 746 | 324 | 10 | 3 | 695 | 24 | 763 | 0.0 | 698 |
| MS.gene07703.t1 | MTR_5g032020 | 50.144 | 696 | 326 | 7 | 17 | 695 | 14 | 705 | 0.0 | 658 |
| MS.gene07703.t1 | MTR_3g080390 | 38.175 | 537 | 294 | 6 | 155 | 687 | 15 | 517 | 3.50e-115 | 356 |
| MS.gene07703.t1 | MTR_8g086520 | 36.007 | 536 | 306 | 5 | 155 | 687 | 20 | 521 | 5.03e-112 | 348 |
| MS.gene07703.t1 | MTR_2g016460 | 35.821 | 536 | 307 | 6 | 155 | 687 | 20 | 521 | 2.12e-106 | 333 |
| MS.gene07703.t1 | MTR_8g063220 | 34.741 | 521 | 301 | 5 | 172 | 687 | 44 | 530 | 7.38e-103 | 325 |
| MS.gene07703.t1 | MTR_8g086520 | 36.550 | 487 | 274 | 5 | 155 | 640 | 20 | 472 | 4.52e-101 | 318 |
| MS.gene07703.t1 | MTR_4g106750 | 33.973 | 521 | 305 | 5 | 172 | 687 | 43 | 529 | 2.95e-98 | 313 |
| MS.gene07703.t1 | MTR_3g078270 | 35.048 | 525 | 294 | 7 | 172 | 687 | 43 | 529 | 1.58e-97 | 311 |
| MS.gene07703.t1 | MTR_4g106750 | 33.658 | 514 | 302 | 5 | 179 | 687 | 1 | 480 | 2.14e-94 | 301 |
| MS.gene07703.t1 | MTR_5g035180 | 32.759 | 522 | 311 | 5 | 172 | 687 | 48 | 535 | 8.20e-94 | 301 |
| MS.gene07703.t1 | MTR_1g021120 | 34.137 | 539 | 314 | 8 | 149 | 682 | 37 | 539 | 4.23e-93 | 300 |
| MS.gene07703.t1 | MTR_3g103230 | 33.013 | 521 | 307 | 6 | 172 | 687 | 68 | 551 | 1.60e-90 | 293 |
| MS.gene07703.t1 | MTR_1g106085 | 32.567 | 522 | 309 | 6 | 172 | 687 | 40 | 524 | 6.50e-87 | 283 |
| MS.gene07703.t1 | MTR_8g086520 | 35.484 | 434 | 244 | 5 | 256 | 687 | 6 | 405 | 3.39e-85 | 274 |
| MS.gene07703.t1 | MTR_8g086520 | 37.093 | 399 | 232 | 3 | 155 | 552 | 20 | 400 | 4.84e-85 | 274 |
| MS.gene07703.t1 | MTR_5g022110 | 31.629 | 528 | 309 | 6 | 170 | 687 | 59 | 544 | 5.38e-82 | 270 |
| MS.gene07703.t1 | MTR_4g106750 | 31.172 | 401 | 238 | 4 | 291 | 687 | 11 | 377 | 1.49e-62 | 213 |
| MS.gene07703.t1 | MTR_8g086535 | 33.621 | 116 | 77 | 0 | 437 | 552 | 1 | 116 | 9.17e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07703.t1 | AT2G27810 | 72.587 | 715 | 170 | 8 | 1 | 695 | 1 | 709 | 0.0 | 968 |
| MS.gene07703.t1 | AT2G27810 | 70.230 | 739 | 170 | 9 | 1 | 695 | 1 | 733 | 0.0 | 956 |
| MS.gene07703.t1 | AT2G27810 | 70.924 | 595 | 147 | 8 | 1 | 575 | 1 | 589 | 0.0 | 759 |
| MS.gene07703.t1 | AT2G27810 | 69.526 | 548 | 141 | 8 | 1 | 528 | 1 | 542 | 0.0 | 675 |
| MS.gene07703.t1 | AT4G38050 | 48.641 | 699 | 309 | 8 | 10 | 687 | 35 | 704 | 0.0 | 629 |
| MS.gene07703.t1 | AT2G05760 | 37.989 | 537 | 295 | 7 | 155 | 687 | 15 | 517 | 8.60e-112 | 347 |
| MS.gene07703.t1 | AT2G34190 | 35.838 | 519 | 296 | 5 | 172 | 687 | 37 | 521 | 5.92e-109 | 340 |
| MS.gene07703.t1 | AT1G60030 | 37.620 | 521 | 286 | 5 | 172 | 687 | 49 | 535 | 3.24e-108 | 339 |
| MS.gene07703.t1 | AT5G62890 | 35.317 | 521 | 298 | 5 | 172 | 687 | 43 | 529 | 1.44e-101 | 321 |
| MS.gene07703.t1 | AT5G62890 | 35.317 | 521 | 298 | 5 | 172 | 687 | 43 | 529 | 1.44e-101 | 321 |
| MS.gene07703.t1 | AT5G62890 | 35.317 | 521 | 298 | 5 | 172 | 687 | 43 | 529 | 1.44e-101 | 321 |
| MS.gene07703.t1 | AT5G49990 | 35.317 | 521 | 298 | 6 | 172 | 687 | 39 | 525 | 4.41e-100 | 317 |
| MS.gene07703.t1 | AT5G49990 | 35.317 | 521 | 298 | 6 | 172 | 687 | 39 | 525 | 4.41e-100 | 317 |
| MS.gene07703.t1 | AT5G49990 | 35.317 | 521 | 298 | 6 | 172 | 687 | 39 | 525 | 4.41e-100 | 317 |
| MS.gene07703.t1 | AT5G49990 | 35.317 | 521 | 298 | 6 | 172 | 687 | 39 | 525 | 4.41e-100 | 317 |
| MS.gene07703.t1 | AT1G49960 | 36.329 | 523 | 294 | 5 | 170 | 687 | 35 | 523 | 1.79e-96 | 308 |
| MS.gene07703.t1 | AT5G62890 | 38.717 | 421 | 239 | 3 | 172 | 591 | 43 | 445 | 6.00e-95 | 302 |
| MS.gene07703.t1 | AT2G26510 | 34.686 | 542 | 308 | 8 | 149 | 682 | 38 | 541 | 6.58e-91 | 294 |
| MS.gene07703.t1 | AT1G10540 | 32.576 | 528 | 306 | 8 | 172 | 687 | 47 | 536 | 1.07e-90 | 293 |
| MS.gene07703.t1 | AT1G65550 | 31.560 | 545 | 325 | 7 | 155 | 687 | 30 | 538 | 3.97e-82 | 270 |
| MS.gene07703.t1 | AT1G10540 | 35.165 | 364 | 206 | 6 | 172 | 527 | 47 | 388 | 2.44e-67 | 227 |
| MS.gene07703.t1 | AT2G26510 | 36.198 | 384 | 218 | 5 | 149 | 527 | 38 | 399 | 7.77e-66 | 223 |
| MS.gene07703.t1 | AT2G26510 | 36.388 | 371 | 209 | 5 | 149 | 514 | 38 | 386 | 4.68e-63 | 216 |
| MS.gene07703.t1 | AT5G25420 | 29.091 | 440 | 221 | 8 | 155 | 591 | 42 | 393 | 4.77e-49 | 178 |
Find 226 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGACAGTGTTGTTCGTTTC+GGG | 0.136430 | 4.1:-43010362 | MS.gene07703:CDS |
| ACTCTGTTGCATATTAGTTT+TGG | 0.205061 | 4.1:-43010332 | MS.gene07703:CDS |
| TACAATTGCCGTGACTAAAA+TGG | 0.212672 | 4.1:-43006737 | MS.gene07703:CDS |
| GACCGTTCCGGTTGCGGTTC+CGG | 0.253259 | 4.1:-43011141 | MS.gene07703:CDS |
| GGTCTCTGGGGAACTGGAAC+TGG | 0.256163 | 4.1:-43006787 | MS.gene07703:CDS |
| GCATATAATGAGGGAGCTTC+AGG | 0.257872 | 4.1:-43010000 | MS.gene07703:CDS |
| GTGGGCAATGCTCACAGCTT+GGG | 0.261248 | 4.1:-43003723 | MS.gene07703:CDS |
| CCAGAGTTACAAGGATTAAA+TGG | 0.261735 | 4.1:-43010239 | MS.gene07703:CDS |
| CAGCATTACATTTCAATGTT+AGG | 0.264358 | 4.1:-43010549 | MS.gene07703:CDS |
| TCGACTTGCGGTTGCGGTTC+AGG | 0.272979 | 4.1:+43011227 | None:intergenic |
| CGAATCCACGGATGAGATTA+AGG | 0.274927 | 4.1:+43008142 | None:intergenic |
| GTAGTGTCTTGGCTGGTCTC+TGG | 0.274970 | 4.1:-43006801 | MS.gene07703:CDS |
| TCCTTTCTTTCACTGGAAAA+TGG | 0.282520 | 4.1:-43008186 | MS.gene07703:CDS |
| ATGATGAAGGATTTGCTTCT+AGG | 0.285363 | 4.1:-43010962 | MS.gene07703:CDS |
| AACCAATTCCACCTTCTTCC+TGG | 0.286962 | 4.1:-43011328 | MS.gene07703:CDS |
| CTTCGTAAGATATCTGTTCT+TGG | 0.293844 | 4.1:-43008557 | MS.gene07703:CDS |
| ATCGACAGTGTTGTTCGTTT+CGG | 0.298954 | 4.1:-43010363 | MS.gene07703:CDS |
| CTCTTGGTCTAGCAATTACT+TGG | 0.299128 | 4.1:-43008403 | MS.gene07703:CDS |
| CGTTTACTTGGCGCCGGCTT+TGG | 0.300570 | 4.1:-43010276 | MS.gene07703:CDS |
| ATTCCTGAAGTTATGGTTGC+TGG | 0.301277 | 4.1:-43003761 | MS.gene07703:CDS |
| TTGGCTGGTCTCTGGGGAAC+TGG | 0.306817 | 4.1:-43006793 | MS.gene07703:CDS |
| GGGCCCTTCCACAGCAAATA+TGG | 0.306871 | 4.1:-43003527 | MS.gene07703:CDS |
| TCCGTTCCCGTCCCCGGTGC+AGG | 0.312913 | 4.1:+43011047 | None:intergenic |
| ACCGCCAACGCCATCCTTCC+TGG | 0.314893 | 4.1:-43011370 | MS.gene07703:CDS |
| GATGATATTGCGAGAGCTTC+CGG | 0.326458 | 4.1:+43003673 | None:intergenic |
| AAACATACCTGCATCAAATA+TGG | 0.330106 | 4.1:-43008324 | MS.gene07703:CDS |
| TCAATACATGTACCCACTAA+TGG | 0.339501 | 4.1:+43008778 | None:intergenic |
| CCTGCCTACTTTCAACAATA+TGG | 0.342558 | 4.1:-43003614 | MS.gene07703:CDS |
| GGCACAGACACGTTCGAATT+CGG | 0.345026 | 4.1:+43003584 | None:intergenic |
| AGGATGGCGTTGGCGGTTGT+TGG | 0.346534 | 4.1:+43011376 | None:intergenic |
| TGCTTCAATTCCTGAAGTTA+TGG | 0.348628 | 4.1:-43003768 | MS.gene07703:CDS |
| CTGATATTGTTGTCTCTCAT+AGG | 0.352579 | 4.1:-43006679 | MS.gene07703:intron |
| CCATTTAATCCTTGTAACTC+TGG | 0.353896 | 4.1:+43010239 | None:intergenic |
| TTCTGTACCGCAGGTAAGAT+TGG | 0.365060 | 4.1:-43003800 | MS.gene07703:intron |
| GATGGTGTTCCGAGTACTAA+TGG | 0.366358 | 4.1:-43011080 | MS.gene07703:CDS |
| AGCAACAGCAGGCTCCCTTC+TGG | 0.367800 | 4.1:+43002598 | None:intergenic |
| GTTTACATCACACCCTTTGT+AGG | 0.369826 | 4.1:+43008343 | None:intergenic |
| TTAACAACCGGAACCGCAAC+CGG | 0.371150 | 4.1:+43011134 | None:intergenic |
| TAGTGTCTTGGCTGGTCTCT+GGG | 0.374771 | 4.1:-43006800 | MS.gene07703:CDS |
| CTTAATCTCATCCGTGGATT+CGG | 0.378682 | 4.1:-43008141 | MS.gene07703:intron |
| CATTTCAATGTTAGGTTCGT+TGG | 0.379465 | 4.1:-43010541 | MS.gene07703:CDS |
| TAATGTGAATGCGACCGTTC+CGG | 0.381480 | 4.1:-43011153 | MS.gene07703:CDS |
| GAGACTAATGCTAGTAATTC+CGG | 0.384342 | 4.1:-43011269 | MS.gene07703:CDS |
| GGATGGCGTTGGCGGTTGTT+GGG | 0.387949 | 4.1:+43011377 | None:intergenic |
| GCCCAGGAAGAAGGTGGAAT+TGG | 0.389499 | 4.1:+43011326 | None:intergenic |
| ACCGTTTGATCTTTAACAAC+CGG | 0.396219 | 4.1:+43011122 | None:intergenic |
| GGGGTGTTCCTTTCTTTCAC+TGG | 0.398133 | 4.1:-43008193 | MS.gene07703:CDS |
| GGAAGAAGGTGGAATTGGTT+TGG | 0.399453 | 4.1:+43011331 | None:intergenic |
| CTGGTCTCCTTTGCTTCATG+TGG | 0.401664 | 4.1:-43003742 | MS.gene07703:CDS |
| TTAGTCTCACCGGAGAATTT+CGG | 0.403058 | 4.1:+43011284 | None:intergenic |
| AGGCCCTTCATTCGTTTACT+TGG | 0.405222 | 4.1:-43010288 | MS.gene07703:CDS |
| GGAGTTCTTAGTCGAGGAAT+TGG | 0.408542 | 4.1:-43006838 | MS.gene07703:CDS |
| GTCCAACTGCTGCAATAGTT+GGG | 0.408837 | 4.1:+43008824 | None:intergenic |
| GCTTTCTTGCTTACAGAAGC+AGG | 0.411014 | 4.1:-43008374 | MS.gene07703:CDS |
| CTCTGTACGACACCGTTTGA+TGG | 0.411962 | 4.1:+43011179 | None:intergenic |
| TGTGGGCAATGCTCACAGCT+TGG | 0.412579 | 4.1:-43003724 | MS.gene07703:CDS |
| ATACCATGCATCTTCTCTAT+TGG | 0.415257 | 4.1:-43006884 | MS.gene07703:CDS |
| ATTTCCCTATCCGTTACAAT+GGG | 0.417826 | 4.1:-43008213 | MS.gene07703:CDS |
| TCTCGCAATATCATCATAGT+TGG | 0.418972 | 4.1:-43003665 | MS.gene07703:CDS |
| GGAAGGTGTTTGTAGTGTCT+TGG | 0.420540 | 4.1:-43006812 | MS.gene07703:CDS |
| TCTTCCTGGGCGAAGAAAAC+CGG | 0.420722 | 4.1:-43011314 | MS.gene07703:CDS |
| GTAATTCCGGTCAGATAAAT+CGG | 0.421161 | 4.1:-43011256 | MS.gene07703:CDS |
| CATTTAATCCTTGTAACTCT+GGG | 0.422116 | 4.1:+43010240 | None:intergenic |
| GGCTCCCTTCTGGCAACCTC+AGG | 0.424502 | 4.1:+43002608 | None:intergenic |
| GGAGAATTTCGGCTTAAAAC+CGG | 0.424658 | 4.1:+43011295 | None:intergenic |
| TGAGGAAGTTGTTGATGGTT+TGG | 0.424794 | 4.1:-43010991 | MS.gene07703:CDS |
| CTTGTTATTGTTCCTGCCAT+GGG | 0.425793 | 4.1:-43010507 | MS.gene07703:CDS |
| GAAAATCCGACCAGCTCTCC+AGG | 0.426806 | 4.1:+43002559 | None:intergenic |
| ACAATTGCCGTGACTAAAAT+GGG | 0.430326 | 4.1:-43006736 | MS.gene07703:CDS |
| TCGAGATTGCCTTTGATACA+AGG | 0.430878 | 4.1:-43010308 | MS.gene07703:CDS |
| AGTCCAACTGCTGCAATAGT+TGG | 0.434333 | 4.1:+43008823 | None:intergenic |
| ACCTGCTCCGTTCCCGTCCC+CGG | 0.434496 | 4.1:+43011041 | None:intergenic |
| CAATACATGTACCCACTAAT+GGG | 0.435106 | 4.1:+43008779 | None:intergenic |
| TGAATACCGTACACCGCAAT+CGG | 0.435386 | 4.1:+43010570 | None:intergenic |
| ACTTGTTATTGTTCCTGCCA+TGG | 0.437223 | 4.1:-43010508 | MS.gene07703:CDS |
| CCCTACATTGTCGCTTCTCA+CGG | 0.440908 | 4.1:-43003548 | MS.gene07703:CDS |
| TTTCTAGGATGAAGCATTGT+CGG | 0.443828 | 4.1:-43008277 | MS.gene07703:CDS |
| TTCTAGGATGAAGCATTGTC+GGG | 0.445143 | 4.1:-43008276 | MS.gene07703:CDS |
| GGAATCAGTTGGCGGTGGCC+AGG | 0.448186 | 4.1:+43011352 | None:intergenic |
| GCCAGGAAGGATGGCGTTGG+CGG | 0.448235 | 4.1:+43011369 | None:intergenic |
| AGGAATGAGGAAGTTGTTGA+TGG | 0.450387 | 4.1:-43010996 | MS.gene07703:CDS |
| GCGAACCCTGCACCGGGGAC+GGG | 0.452515 | 4.1:-43011053 | MS.gene07703:CDS |
| TTCAGGTGGGTGAAGTGGGT+TGG | 0.455235 | 4.1:-43002539 | MS.gene07703:CDS |
| CAGTTATGGATTCCCATTAG+TGG | 0.455831 | 4.1:-43008791 | MS.gene07703:CDS |
| GAATGCGACCGTTCCGGTTG+CGG | 0.456343 | 4.1:-43011147 | MS.gene07703:CDS |
| AGGAGCGAGGGGTATATGTT+TGG | 0.457463 | 4.1:-43002637 | MS.gene07703:CDS |
| GGCGAACCCTGCACCGGGGA+CGG | 0.460338 | 4.1:-43011054 | MS.gene07703:CDS |
| GGTGTTTGTAGTGTCTTGGC+TGG | 0.461548 | 4.1:-43006808 | MS.gene07703:CDS |
| TCAAGATCGACTTGCGGTTG+CGG | 0.463155 | 4.1:+43011221 | None:intergenic |
| CCTCGCTCCTGCCGACTGCC+AGG | 0.465146 | 4.1:+43002650 | None:intergenic |
| GCATCGAGACCTCCAACTCC+TGG | 0.467563 | 4.1:-43006859 | MS.gene07703:CDS |
| GGCGCCAAGTAAACGAATGA+AGG | 0.468538 | 4.1:+43010284 | None:intergenic |
| GTTTCTTGTTGCTGTTATCC+TGG | 0.470083 | 4.1:-43002684 | MS.gene07703:CDS |
| CAAGCTCTACTTGGATATAC+CGG | 0.471928 | 4.1:-43009951 | MS.gene07703:CDS |
| GCGTTGGCGGTTGTTGGGAT+CGG | 0.475679 | 4.1:+43011382 | None:intergenic |
| GAGTTTATTATCACCAAAGC+CGG | 0.476403 | 4.1:+43010263 | None:intergenic |
| CCGTTTGATGGAGGACGAAC+CGG | 0.477031 | 4.1:+43011191 | None:intergenic |
| TCTTAGTCGAGGAATTGGTT+TGG | 0.477441 | 4.1:-43006833 | MS.gene07703:CDS |
| ACCGGGGACGGGAACGGAGC+AGG | 0.479802 | 4.1:-43011042 | MS.gene07703:CDS |
| ACCAATTCCACCTTCTTCCT+GGG | 0.481259 | 4.1:-43011327 | MS.gene07703:CDS |
| CGACTAAGAACTCCAGGAGT+TGG | 0.481544 | 4.1:+43006847 | None:intergenic |
| TACTGTACCTGGCAGTCGGC+AGG | 0.488548 | 4.1:-43002657 | MS.gene07703:CDS |
| GAGGAGGACAGTGAGGAATG+AGG | 0.488731 | 4.1:-43011009 | MS.gene07703:CDS |
| CCGTGAGAAGCGACAATGTA+GGG | 0.492102 | 4.1:+43003548 | None:intergenic |
| TCTAACTGACAGATTCCTCT+TGG | 0.494730 | 4.1:-43008419 | MS.gene07703:intron |
| TTGGCGGTGGCCAGGAAGGA+TGG | 0.495600 | 4.1:+43011360 | None:intergenic |
| AGACCAGCAACCATAACTTC+AGG | 0.498914 | 4.1:+43003758 | None:intergenic |
| GACTTATGTCACTCTTAGTA+AGG | 0.499283 | 4.1:-43009929 | MS.gene07703:intron |
| CTGGCAGTCGGCAGGAGCGA+GGG | 0.501030 | 4.1:-43002649 | MS.gene07703:CDS |
| GCAGTTCCGATTGCGGTGTA+CGG | 0.501895 | 4.1:-43010576 | MS.gene07703:intron |
| CTAAGAACTCCAGGAGTTGG+AGG | 0.503127 | 4.1:+43006850 | None:intergenic |
| GTGGGTACATGTATTGAGAT+TGG | 0.510700 | 4.1:-43008772 | MS.gene07703:CDS |
| AAGATCAAACGGTGAAGAAA+CGG | 0.511106 | 4.1:-43011112 | MS.gene07703:CDS |
| CATATAATGAGGGAGCTTCA+GGG | 0.511243 | 4.1:-43009999 | MS.gene07703:CDS |
| TCCCCAACTATTGCAGCAGT+TGG | 0.512105 | 4.1:-43008826 | MS.gene07703:CDS |
| CCTCCATATTTGCTGTGGAA+GGG | 0.512476 | 4.1:+43003524 | None:intergenic |
| CACACTTTGTTCGCTACACA+TGG | 0.512942 | 4.1:-43002714 | MS.gene07703:CDS |
| AGTCGATCTTGAAGCCGGTC+CGG | 0.513213 | 4.1:-43011210 | MS.gene07703:CDS |
| CCTGGCAGTCGGCAGGAGCG+AGG | 0.514393 | 4.1:-43002650 | MS.gene07703:CDS |
| TCCGGTTGTTAAAGATCAAA+CGG | 0.515328 | 4.1:-43011123 | MS.gene07703:CDS |
| CTCGCAATATCATCATAGTT+GGG | 0.515333 | 4.1:-43003664 | MS.gene07703:CDS |
| GGTTTGGTTGTTGATGATGA+AGG | 0.515499 | 4.1:-43010975 | MS.gene07703:CDS |
| CTTTCTTGCTTACAGAAGCA+GGG | 0.516220 | 4.1:-43008373 | MS.gene07703:CDS |
| AGTTATGGATTCCCATTAGT+GGG | 0.518231 | 4.1:-43008790 | MS.gene07703:CDS |
| TGGTCTCCTTTGCTTCATGT+GGG | 0.519331 | 4.1:-43003741 | MS.gene07703:CDS |
| GGACAGGCGAACCCTGCACC+GGG | 0.520751 | 4.1:-43011059 | MS.gene07703:CDS |
| TGGTGCAGTACAGATATTAG+TGG | 0.521644 | 4.1:-43008752 | MS.gene07703:CDS |
| AATGAAGGGCCTTGTATCAA+AGG | 0.522054 | 4.1:+43010299 | None:intergenic |
| CCGTTCCCGTCCCCGGTGCA+GGG | 0.524545 | 4.1:+43011048 | None:intergenic |
| CCCTCCATATTTGCTGTGGA+AGG | 0.524569 | 4.1:+43003523 | None:intergenic |
| TGGGCAATGCTCACAGCTTG+GGG | 0.524711 | 4.1:-43003722 | MS.gene07703:CDS |
| TGGACAGGCGAACCCTGCAC+CGG | 0.525285 | 4.1:-43011060 | MS.gene07703:CDS |
| TTCATTCGTTTACTTGGCGC+CGG | 0.525705 | 4.1:-43010282 | MS.gene07703:CDS |
| CCCTGCACCGGGGACGGGAA+CGG | 0.525779 | 4.1:-43011048 | MS.gene07703:CDS |
| TGAACCTGAGGTTGCCAGAA+GGG | 0.529846 | 4.1:-43002612 | MS.gene07703:CDS |
| TCATAATCTTTAGCAACAGC+AGG | 0.530295 | 4.1:+43002587 | None:intergenic |
| GATTTCCCTATCCGTTACAA+TGG | 0.531946 | 4.1:-43008214 | MS.gene07703:CDS |
| GTGGCCAGGAAGGATGGCGT+TGG | 0.533432 | 4.1:+43011366 | None:intergenic |
| TCAGTTGGCGGTGGCCAGGA+AGG | 0.535735 | 4.1:+43011356 | None:intergenic |
| CCGGTTCGTCCTCCATCAAA+CGG | 0.536469 | 4.1:-43011191 | MS.gene07703:CDS |
| GGAATTGGTTTGGAATCAGT+TGG | 0.536596 | 4.1:+43011341 | None:intergenic |
| CGGAGCAGGTGACGCAGGTG+AGG | 0.538238 | 4.1:-43011028 | MS.gene07703:CDS |
| CTAAAGATTATGAGTTACCC+TGG | 0.546431 | 4.1:-43002577 | MS.gene07703:CDS |
| AGTCGAGGAATTGGTTTGGA+AGG | 0.547058 | 4.1:-43006829 | MS.gene07703:CDS |
| TATGAGTTACCCTGGAGAGC+TGG | 0.548467 | 4.1:-43002569 | MS.gene07703:CDS |
| TGCCAGGTACAGTATTATCC+AGG | 0.549310 | 4.1:+43002666 | None:intergenic |
| ATGCATTGAAATCCTCTCCA+TGG | 0.550334 | 4.1:-43008241 | MS.gene07703:CDS |
| CCATATTGTTGAAAGTAGGC+AGG | 0.553587 | 4.1:+43003614 | None:intergenic |
| ATTGGTTTGGAATCAGTTGG+CGG | 0.555926 | 4.1:+43011344 | None:intergenic |
| CCTACATTGTCGCTTCTCAC+GGG | 0.556153 | 4.1:-43003547 | MS.gene07703:CDS |
| ACATGAGAACCTCCCATGGC+AGG | 0.558714 | 4.1:+43010495 | None:intergenic |
| AGAAATTCAAGCATATAATG+AGG | 0.560821 | 4.1:-43010010 | MS.gene07703:CDS |
| TGATGGAGGACGAACCGGAC+CGG | 0.562812 | 4.1:+43011196 | None:intergenic |
| AGCAGGTGACGCAGGTGAGG+AGG | 0.564030 | 4.1:-43011025 | MS.gene07703:CDS |
| AATCTACGCTACAGTGAAGC+CGG | 0.564278 | 4.1:-43003692 | MS.gene07703:CDS |
| TCTTGGTCTAGCAATTACTT+GGG | 0.564511 | 4.1:-43008402 | MS.gene07703:CDS |
| GGTTTCCTTAATCTCATCCG+TGG | 0.564532 | 4.1:-43008147 | MS.gene07703:CDS |
| GTTATTGTTCCTGCCATGGG+AGG | 0.565738 | 4.1:-43010504 | MS.gene07703:CDS |
| GAAATTCAAGCATATAATGA+GGG | 0.566196 | 4.1:-43010009 | MS.gene07703:CDS |
| TCTGAAACCATATTTGATGC+AGG | 0.567358 | 4.1:+43008317 | None:intergenic |
| AACCGGAACCGCAACCGGAA+CGG | 0.568462 | 4.1:+43011139 | None:intergenic |
| ATTCCTCGACTAAGAACTCC+AGG | 0.570179 | 4.1:+43006841 | None:intergenic |
| TTGTTGAAAGTAGGCAGGTA+CGG | 0.570766 | 4.1:+43003619 | None:intergenic |
| TACTAAGAGTGACATAAGTC+CGG | 0.572291 | 4.1:+43009932 | None:intergenic |
| TGGCAGTCGGCAGGAGCGAG+GGG | 0.572694 | 4.1:-43002648 | MS.gene07703:CDS |
| TGTACCGCAGGTAAGATTGG+AGG | 0.573136 | 4.1:-43003797 | MS.gene07703:intron |
| ACACCCCATTGTAACGGATA+GGG | 0.581456 | 4.1:+43008209 | None:intergenic |
| ATAAACTCCCCAGAGTTACA+AGG | 0.582734 | 4.1:-43010248 | MS.gene07703:CDS |
| CGACAGTGTTGTTCGTTTCG+GGG | 0.585199 | 4.1:-43010361 | MS.gene07703:CDS |
| GTACCGCAGGTAAGATTGGA+GGG | 0.585292 | 4.1:-43003796 | MS.gene07703:intron |
| CCGTGACTAAAATGGGAAGC+CGG | 0.585644 | 4.1:-43006729 | MS.gene07703:CDS |
| CCGCAAGTCGATCTTGAAGC+CGG | 0.586317 | 4.1:-43011215 | MS.gene07703:CDS |
| CACCTAGTTGAACAGACAGC+CGG | 0.586835 | 4.1:+43006710 | None:intergenic |
| ATATGTTTGGTCTGAACCTG+AGG | 0.587555 | 4.1:-43002624 | MS.gene07703:CDS |
| GATGCCATATTGTTGAAAGT+AGG | 0.587903 | 4.1:+43003610 | None:intergenic |
| CAAGTAATTGCTAGACCAAG+AGG | 0.594913 | 4.1:+43008404 | None:intergenic |
| TGTTCCGAGTACTAATGGAC+AGG | 0.600840 | 4.1:-43011075 | MS.gene07703:CDS |
| ATATAATGAGGGAGCTTCAG+GGG | 0.601585 | 4.1:-43009998 | MS.gene07703:CDS |
| ATAGTTGGGGATACAACTAC+AGG | 0.602089 | 4.1:+43008838 | None:intergenic |
| GCGCCAAGTAAACGAATGAA+GGG | 0.602735 | 4.1:+43010285 | None:intergenic |
| AAAGGAACACCCCATTGTAA+CGG | 0.603516 | 4.1:+43008203 | None:intergenic |
| TCCAACTGCTGCAATAGTTG+GGG | 0.605533 | 4.1:+43008825 | None:intergenic |
| ATTACTAGCATTAGTCTCAC+CGG | 0.605866 | 4.1:+43011274 | None:intergenic |
| GGGAACGGAGCAGGTGACGC+AGG | 0.606753 | 4.1:-43011033 | MS.gene07703:CDS |
| ATAATACTGTACCTGGCAGT+CGG | 0.607040 | 4.1:-43002661 | MS.gene07703:CDS |
| CAAGAAACTAACCGAATCCA+CGG | 0.607559 | 4.1:+43008130 | None:intergenic |
| CCCTTCCACAGCAAATATGG+AGG | 0.608573 | 4.1:-43003524 | MS.gene07703:CDS |
| ATCCTGGATAATACTGTACC+TGG | 0.608997 | 4.1:-43002668 | MS.gene07703:CDS |
| AGGAATCCGATTTATCTGAC+CGG | 0.609357 | 4.1:+43011250 | None:intergenic |
| TTCTTCGCCCAGGAAGAAGG+TGG | 0.612428 | 4.1:+43011320 | None:intergenic |
| GGTTTGGAATCAGTTGGCGG+TGG | 0.612818 | 4.1:+43011347 | None:intergenic |
| TTCGCCTGTCCATTAGTACT+CGG | 0.612946 | 4.1:+43011071 | None:intergenic |
| CTGAACCTGAGGTTGCCAGA+AGG | 0.613331 | 4.1:-43002613 | MS.gene07703:CDS |
| ATGTAGGGCTGAAAATAACT+TGG | 0.613350 | 4.1:+43003563 | None:intergenic |
| AGCCGGCTGTCTGTTCAACT+AGG | 0.616215 | 4.1:-43006712 | MS.gene07703:CDS |
| CCTTCCACAGCAAATATGGA+GGG | 0.617060 | 4.1:-43003523 | MS.gene07703:CDS |
| TTATGTTGCAGTTCCGATTG+CGG | 0.618310 | 4.1:-43010583 | MS.gene07703:intron |
| AGTGTCTTGGCTGGTCTCTG+GGG | 0.625706 | 4.1:-43006799 | MS.gene07703:CDS |
| ACTTGCGGTTGCGGTTCAGG+AGG | 0.629186 | 4.1:+43011230 | None:intergenic |
| GGATAGGGAAATCTAAACCA+TGG | 0.629843 | 4.1:+43008224 | None:intergenic |
| GCATTGCCCACATGAAGCAA+AGG | 0.632613 | 4.1:+43003735 | None:intergenic |
| TGTACGACACCGTTTGATGG+AGG | 0.632739 | 4.1:+43011182 | None:intergenic |
| ATCAAACGGTGAAGAAACGG+AGG | 0.633249 | 4.1:-43011109 | MS.gene07703:CDS |
| ATGGCAGGAACAATAACAAG+TGG | 0.633744 | 4.1:+43010510 | None:intergenic |
| TCCAAGTAGAGCTTGAAAAG+CGG | 0.636401 | 4.1:+43009959 | None:intergenic |
| CCCGTGAGAAGCGACAATGT+AGG | 0.638228 | 4.1:+43003547 | None:intergenic |
| AACACCCCATTGTAACGGAT+AGG | 0.641253 | 4.1:+43008208 | None:intergenic |
| ATACCCCTCCATATTTGCTG+TGG | 0.642137 | 4.1:+43003519 | None:intergenic |
| AAAATCCGACCAGCTCTCCA+GGG | 0.644760 | 4.1:+43002560 | None:intergenic |
| ATTTAATCCTTGTAACTCTG+GGG | 0.644973 | 4.1:+43010241 | None:intergenic |
| GCAGGAGGACACTTCTAATG+TGG | 0.646551 | 4.1:-43010387 | MS.gene07703:intron |
| CGCAGGTGAGGAGGACAGTG+AGG | 0.650213 | 4.1:-43011016 | MS.gene07703:CDS |
| CTTCCACAGCAAATATGGAG+GGG | 0.651752 | 4.1:-43003522 | MS.gene07703:intron |
| GGGAAATCTAAACCATGGAG+AGG | 0.651944 | 4.1:+43008229 | None:intergenic |
| TTTCAAATTATACCTAAACC+AGG | 0.654853 | 4.1:+43010906 | None:intergenic |
| ACTCCTGGAGTTCTTAGTCG+AGG | 0.655987 | 4.1:-43006844 | MS.gene07703:CDS |
| AGTTACCCTGGAGAGCTGGT+CGG | 0.657920 | 4.1:-43002565 | MS.gene07703:CDS |
| CTACCAATAGAGAAGATGCA+TGG | 0.658196 | 4.1:+43006881 | None:intergenic |
| AATGGCTCTTGTAATGTGTG+TGG | 0.665360 | 4.1:-43008168 | MS.gene07703:CDS |
| AAGAAACGGAGGGATTCTGA+TGG | 0.666170 | 4.1:-43011098 | MS.gene07703:CDS |
| TATAATGAGGGAGCTTCAGG+GGG | 0.670053 | 4.1:-43009997 | MS.gene07703:CDS |
| ACTCACATGAGAACCTCCCA+TGG | 0.670641 | 4.1:+43010491 | None:intergenic |
| TCAAACGGTGAAGAAACGGA+GGG | 0.701700 | 4.1:-43011108 | MS.gene07703:CDS |
| TTTCCCTATCCGTTACAATG+GGG | 0.707261 | 4.1:-43008212 | MS.gene07703:CDS |
| CCGGCTTCAAGATCGACTTG+CGG | 0.712163 | 4.1:+43011215 | None:intergenic |
| GACAGGCGAACCCTGCACCG+GGG | 0.724935 | 4.1:-43011058 | MS.gene07703:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 43002532 | 43011414 | 43002532 | ID=MS.gene07703 |
| chr4.1 | mRNA | 43002532 | 43011414 | 43002532 | ID=MS.gene07703.t1;Parent=MS.gene07703 |
| chr4.1 | exon | 43010919 | 43011414 | 43010919 | ID=MS.gene07703.t1.exon1;Parent=MS.gene07703.t1 |
| chr4.1 | CDS | 43010919 | 43011414 | 43010919 | ID=cds.MS.gene07703.t1;Parent=MS.gene07703.t1 |
| chr4.1 | exon | 43010497 | 43010594 | 43010497 | ID=MS.gene07703.t1.exon2;Parent=MS.gene07703.t1 |
| chr4.1 | CDS | 43010497 | 43010594 | 43010497 | ID=cds.MS.gene07703.t1;Parent=MS.gene07703.t1 |
| chr4.1 | exon | 43010232 | 43010405 | 43010232 | ID=MS.gene07703.t1.exon3;Parent=MS.gene07703.t1 |
| chr4.1 | CDS | 43010232 | 43010405 | 43010232 | ID=cds.MS.gene07703.t1;Parent=MS.gene07703.t1 |
| chr4.1 | exon | 43009930 | 43010030 | 43009930 | ID=MS.gene07703.t1.exon4;Parent=MS.gene07703.t1 |
| chr4.1 | CDS | 43009930 | 43010030 | 43009930 | ID=cds.MS.gene07703.t1;Parent=MS.gene07703.t1 |
| chr4.1 | exon | 43008735 | 43008870 | 43008735 | ID=MS.gene07703.t1.exon5;Parent=MS.gene07703.t1 |
| chr4.1 | CDS | 43008735 | 43008870 | 43008735 | ID=cds.MS.gene07703.t1;Parent=MS.gene07703.t1 |
| chr4.1 | exon | 43008532 | 43008582 | 43008532 | ID=MS.gene07703.t1.exon6;Parent=MS.gene07703.t1 |
| chr4.1 | CDS | 43008532 | 43008582 | 43008532 | ID=cds.MS.gene07703.t1;Parent=MS.gene07703.t1 |
| chr4.1 | exon | 43008142 | 43008429 | 43008142 | ID=MS.gene07703.t1.exon7;Parent=MS.gene07703.t1 |
| chr4.1 | CDS | 43008142 | 43008429 | 43008142 | ID=cds.MS.gene07703.t1;Parent=MS.gene07703.t1 |
| chr4.1 | exon | 43006680 | 43006914 | 43006680 | ID=MS.gene07703.t1.exon8;Parent=MS.gene07703.t1 |
| chr4.1 | CDS | 43006680 | 43006914 | 43006680 | ID=cds.MS.gene07703.t1;Parent=MS.gene07703.t1 |
| chr4.1 | exon | 43003523 | 43003809 | 43003523 | ID=MS.gene07703.t1.exon9;Parent=MS.gene07703.t1 |
| chr4.1 | CDS | 43003523 | 43003809 | 43003523 | ID=cds.MS.gene07703.t1;Parent=MS.gene07703.t1 |
| chr4.1 | exon | 43002532 | 43002753 | 43002532 | ID=MS.gene07703.t1.exon10;Parent=MS.gene07703.t1 |
| chr4.1 | CDS | 43002532 | 43002753 | 43002532 | ID=cds.MS.gene07703.t1;Parent=MS.gene07703.t1 |
| Gene Sequence |
| Protein sequence |
