AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07716


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07716.t1 MTR_2g038270 90.415 626 52 1 1 618 1 626 0.0 1148
MS.gene07716.t1 MTR_7g025770 81.583 619 113 1 1 619 1 618 0.0 1034
MS.gene07716.t1 MTR_4g079590 80.906 618 117 1 1 618 1 617 0.0 1015
MS.gene07716.t1 MTR_2g038260 75.121 619 153 1 1 619 1 618 0.0 977
MS.gene07716.t1 MTR_7g026170 73.258 617 164 1 1 617 1 616 0.0 935
MS.gene07716.t1 MTR_2g032550 71.613 620 173 3 1 618 1 619 0.0 927
MS.gene07716.t1 MTR_5g066800 71.815 628 164 3 1 617 1 626 0.0 920
MS.gene07716.t1 MTR_7g029415 72.757 613 165 2 6 618 13 623 0.0 913
MS.gene07716.t1 MTR_7g451380 71.729 619 173 2 1 618 1 618 0.0 911
MS.gene07716.t1 MTR_7g021440 71.916 616 171 2 1 616 1 614 0.0 903
MS.gene07716.t1 MTR_7g026110 71.870 615 169 4 1 615 1 611 0.0 903
MS.gene07716.t1 MTR_4g027145 69.952 629 176 3 1 617 1 628 0.0 893
MS.gene07716.t1 MTR_7g026130 71.729 619 169 4 1 615 1 617 0.0 892
MS.gene07716.t1 MTR_7g026130 47.222 108 46 2 519 615 596 703 5.46e-16 82.0
MS.gene07716.t1 MTR_7g011590 72.139 603 153 4 1 603 1 588 0.0 884
MS.gene07716.t1 MTR_7g026140 69.628 619 171 2 1 619 1 602 0.0 879
MS.gene07716.t1 MTR_2g437440 68.821 619 173 3 1 618 1 600 0.0 877
MS.gene07716.t1 MTR_2g022050 70.436 619 181 2 1 618 1 618 0.0 877
MS.gene07716.t1 MTR_8g103930 70.000 630 158 6 1 617 1 612 0.0 875
MS.gene07716.t1 MTR_1g017130 67.961 618 157 4 1 618 1 577 0.0 841
MS.gene07716.t1 MTR_7g074460 68.882 617 172 3 1 617 1 597 0.0 840
MS.gene07716.t1 MTR_7g025720 65.686 612 207 3 1 612 1 609 0.0 828
MS.gene07716.t1 MTR_2g032580 66.774 620 171 5 1 618 1 587 0.0 824
MS.gene07716.t1 MTR_7g007000 66.667 621 160 5 1 619 1 576 0.0 816
MS.gene07716.t1 MTR_7g024390 65.105 619 210 5 1 617 1 615 0.0 810
MS.gene07716.t1 MTR_7g025760 64.274 613 215 4 1 612 1 610 0.0 809
MS.gene07716.t1 MTR_7g026090 64.878 615 212 3 1 615 1 611 0.0 806
MS.gene07716.t1 MTR_8g032650 65.139 611 210 3 1 611 1 608 0.0 805
MS.gene07716.t1 MTR_7g035155 65.751 619 155 6 1 618 1 563 0.0 805
MS.gene07716.t1 MTR_7g024030 65.033 612 211 3 1 612 1 609 0.0 802
MS.gene07716.t1 MTR_4g063710 64.459 619 214 5 1 617 1 615 0.0 802
MS.gene07716.t1 MTR_7g024580 63.974 619 217 5 1 617 1 615 0.0 800
MS.gene07716.t1 MTR_7g099680 64.136 619 216 5 1 617 1 615 0.0 798
MS.gene07716.t1 MTR_7g025790 63.889 612 218 3 1 612 1 609 0.0 798
MS.gene07716.t1 MTR_4g063720 64.297 619 215 5 1 617 1 615 0.0 797
MS.gene07716.t1 MTR_7g026030 63.399 612 221 3 1 612 1 609 0.0 790
MS.gene07716.t1 MTR_4g130540 63.328 619 220 6 1 617 1 614 0.0 788
MS.gene07716.t1 MTR_1g041565 66.992 615 130 7 6 619 2 544 0.0 787
MS.gene07716.t1 MTR_7g025820 66.214 589 196 3 1 588 1 587 0.0 786
MS.gene07716.t1 MTR_7g025620 63.072 612 223 3 1 612 1 609 0.0 784
MS.gene07716.t1 MTR_7g078190 63.415 615 220 5 1 612 1 613 0.0 783
MS.gene07716.t1 MTR_7g451360 63.813 619 163 3 1 618 1 559 0.0 782
MS.gene07716.t1 MTR_7g025630 64.542 612 200 5 1 612 1 595 0.0 774
MS.gene07716.t1 MTR_7g078210 63.005 619 225 4 1 617 1 617 0.0 767
MS.gene07716.t1 MTR_7g025740 61.452 620 229 5 1 612 1 618 0.0 764
MS.gene07716.t1 MTR_7g025260 60.847 590 221 6 31 617 5 587 0.0 706
MS.gene07716.t1 MTR_6g033760 57.290 583 243 5 1 581 1 579 0.0 660
MS.gene07716.t1 MTR_6g033850 54.281 619 276 6 1 617 1 614 0.0 659
MS.gene07716.t1 MTR_4g063720 54.604 619 204 8 1 617 1 544 0.0 632
MS.gene07716.t1 MTR_2g017730 53.883 618 259 8 5 614 4 603 0.0 631
MS.gene07716.t1 MTR_6g033870 53.247 616 277 7 9 617 10 621 0.0 620
MS.gene07716.t1 MTR_2g032160 76.533 375 88 0 1 375 1 375 0.0 618
MS.gene07716.t1 MTR_2g032160 56.701 97 42 0 521 617 366 462 3.85e-26 112
MS.gene07716.t1 MTR_6g033820 51.840 625 287 8 1 617 1 619 0.0 600
MS.gene07716.t1 MTR_6g033955 52.110 616 283 7 9 617 9 619 0.0 598
MS.gene07716.t1 MTR_8g099945 51.946 591 271 9 7 592 36 618 0.0 598
MS.gene07716.t1 MTR_8g099795 51.864 590 273 8 7 592 36 618 0.0 597
MS.gene07716.t1 MTR_6g033800 52.481 524 244 5 95 617 4 523 0.0 538
MS.gene07716.t1 MTR_7g026050 73.333 375 71 3 245 618 1 347 0.0 526
MS.gene07716.t1 MTR_2g040370 68.020 394 122 2 3 396 1023 1412 6.18e-177 547
MS.gene07716.t1 MTR_2g040370 66.495 388 125 3 3 389 1407 1790 6.14e-161 504
MS.gene07716.t1 MTR_2g040370 68.020 394 122 2 3 396 1023 1412 7.53e-177 547
MS.gene07716.t1 MTR_2g040370 66.581 389 125 3 3 390 1407 1791 1.34e-161 506
MS.gene07716.t1 MTR_2g040160 65.337 401 134 3 1 400 1101 1497 5.39e-172 528
MS.gene07716.t1 MTR_2g040260 64.589 401 137 3 1 400 1030 1426 1.27e-171 527
MS.gene07716.t1 MTR_2g040220 65.206 388 131 3 1 386 1010 1395 8.25e-167 516
MS.gene07716.t1 MTR_2g040220 52.577 97 38 2 450 538 1399 1495 1.19e-20 97.4
MS.gene07716.t1 MTR_2g040350 63.366 404 139 4 2 400 813 1212 2.33e-166 508
MS.gene07716.t1 MTR_2g040350 63.366 404 139 4 2 400 1031 1430 1.06e-164 508
MS.gene07716.t1 MTR_7g026080 89.796 245 25 0 1 245 1 245 1.71e-162 465
MS.gene07716.t1 MTR_1g077230 78.369 282 61 0 1 282 1 282 9.23e-161 462
MS.gene07716.t1 MTR_2g010020 44.553 615 307 15 10 614 58 648 6.60e-160 474
MS.gene07716.t1 MTR_2g010020 47.576 557 268 12 10 560 57 595 7.53e-160 474
MS.gene07716.t1 MTR_4g092920 43.922 617 309 17 10 614 54 645 6.87e-153 456
MS.gene07716.t1 MTR_2g031670 59.897 389 65 3 21 409 43 340 2.69e-151 440
MS.gene07716.t1 MTR_2g005690 44.643 560 288 11 8 561 70 613 9.77e-144 434
MS.gene07716.t1 MTR_6g034005 44.241 547 282 9 82 617 2 536 4.34e-135 411
MS.gene07716.t1 MTR_4g088515 74.502 251 46 1 8 258 275 507 1.02e-127 389
MS.gene07716.t1 MTR_4g088515 73.786 103 26 1 336 438 518 619 2.55e-39 153
MS.gene07716.t1 MTR_4g092920 45.570 474 234 11 94 560 3 459 1.42e-124 379
MS.gene07716.t1 MTR_1g077240 60.606 297 109 2 322 618 1 289 3.72e-109 330
MS.gene07716.t1 MTR_6g033810 51.923 312 101 2 100 410 22 285 1.36e-99 305
MS.gene07716.t1 MTR_6g478100 67.453 212 55 2 38 249 10 207 4.38e-92 287
MS.gene07716.t1 MTR_6g478100 58.333 96 40 0 516 611 208 303 2.36e-27 113
MS.gene07716.t1 MTR_5g097190 58.268 254 59 3 3 256 152 358 5.41e-92 288
MS.gene07716.t1 MTR_6g033855 43.164 373 126 4 91 463 13 299 1.72e-91 285
MS.gene07716.t1 MTR_7g074540 61.386 202 77 1 418 619 1 201 1.90e-76 242
MS.gene07716.t1 MTR_4g012050 32.965 452 283 7 10 445 4 451 2.31e-75 258
MS.gene07716.t1 MTR_2g102180 32.045 440 283 6 10 437 4 439 2.35e-73 252
MS.gene07716.t1 MTR_5g006180 31.115 511 316 13 9 505 29 517 3.23e-71 240
MS.gene07716.t1 MTR_1g116250 49.446 271 96 3 348 618 60 289 3.36e-71 231
MS.gene07716.t1 MTR_1207s0010 61.714 175 66 1 109 283 2 175 5.54e-69 222
MS.gene07716.t1 MTR_3g051300 31.591 421 281 6 10 429 4 418 2.81e-68 237
MS.gene07716.t1 MTR_5g092570 32.009 428 282 6 10 432 4 427 1.37e-65 229
MS.gene07716.t1 MTR_7g026180 84.874 119 18 0 78 196 23 141 9.29e-65 216
MS.gene07716.t1 MTR_7g026180 45.833 216 87 2 402 617 144 329 9.23e-48 171
MS.gene07716.t1 MTR_7g451390 56.593 182 79 0 437 618 9 190 6.67e-63 206
MS.gene07716.t1 MTR_5g090110 29.555 494 305 12 9 489 28 491 1.79e-60 210
MS.gene07716.t1 MTR_4g115780 32.115 520 320 15 9 504 140 650 2.05e-60 214
MS.gene07716.t1 MTR_4g107920 30.859 512 304 18 10 497 21 506 3.69e-57 202
MS.gene07716.t1 MTR_3g081170 26.886 517 340 11 12 495 29 540 1.29e-55 203
MS.gene07716.t1 MTR_5g005870 37.658 316 176 8 280 581 40 348 4.21e-52 184
MS.gene07716.t1 MTR_6g033910 44.796 221 71 3 67 285 12 183 6.26e-51 174
MS.gene07716.t1 MTR_1g068900 60.690 145 52 3 428 569 23 165 1.32e-48 167
MS.gene07716.t1 MTR_2g040355 32.401 429 130 12 189 617 2 270 2.42e-45 163
MS.gene07716.t1 MTR_5g005890 37.004 227 92 4 74 299 5 181 9.38e-37 135
MS.gene07716.t1 MTR_4g027235 72.000 75 21 0 1 75 1 75 2.73e-33 122
MS.gene07716.t1 MTR_4g027085 72.000 75 21 0 1 75 1 75 2.73e-33 122
MS.gene07716.t1 MTR_7g026095 63.736 91 33 0 483 573 256 346 7.09e-31 124
MS.gene07716.t1 MTR_7g026095 55.056 89 24 2 87 175 188 260 2.42e-21 96.3
MS.gene07716.t1 MTR_7g026190 54.455 101 37 2 281 381 2 93 1.16e-28 114
MS.gene07716.t1 MTR_7g026190 42.667 150 74 5 471 617 68 208 7.29e-22 94.7
MS.gene07716.t1 MTR_2g017710 33.716 261 82 8 225 480 17 191 1.42e-24 104
MS.gene07716.t1 MTR_6g033805 63.014 73 25 1 1 73 1 71 9.15e-24 95.5
MS.gene07716.t1 MTR_3g114370 42.568 148 44 2 473 619 3 110 8.71e-17 77.0
MS.gene07716.t1 MTR_7g021430 49.296 71 36 0 215 285 1 71 1.45e-16 79.0
MS.gene07716.t1 MTR_4g115860 41.935 93 52 2 397 488 29 120 9.73e-15 71.6
MS.gene07716.t1 MTR_3g114360 48.387 93 32 2 448 540 189 265 5.33e-12 67.0
MS.gene07716.t1 MTR_7g026160 36.667 120 50 4 298 391 72 191 1.40e-11 65.5
MS.gene07716.t1 MTR_7g025680 77.419 31 7 0 8 38 8 38 3.39e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07716.t1 AT3G12580 64.943 619 211 5 1 617 1 615 0.0 810
MS.gene07716.t1 AT5G02500 64.297 619 215 5 1 617 1 615 0.0 801
MS.gene07716.t1 AT5G02490 63.328 619 221 5 1 617 1 615 0.0 789
MS.gene07716.t1 AT3G09440 62.843 619 224 5 1 617 1 615 0.0 780
MS.gene07716.t1 AT3G09440 62.843 619 224 5 1 617 1 615 0.0 780
MS.gene07716.t1 AT3G09440 62.843 619 224 5 1 617 1 615 0.0 780
MS.gene07716.t1 AT3G09440 62.843 619 224 5 1 617 1 615 0.0 780
MS.gene07716.t1 AT1G16030 62.843 619 223 6 1 617 1 614 0.0 778
MS.gene07716.t1 AT1G56410 63.005 619 221 6 1 617 1 613 0.0 769
MS.gene07716.t1 AT5G28540 51.713 613 284 9 7 615 35 639 0.0 612
MS.gene07716.t1 AT5G42020 51.550 613 285 9 7 615 35 639 0.0 610
MS.gene07716.t1 AT5G42020 51.550 613 285 9 7 615 40 644 0.0 609
MS.gene07716.t1 AT5G02500 73.779 389 100 1 1 389 1 387 0.0 605
MS.gene07716.t1 AT1G09080 53.401 588 264 7 7 591 40 620 0.0 593
MS.gene07716.t1 AT1G09080 53.401 588 264 7 7 591 50 630 0.0 593
MS.gene07716.t1 AT5G42020 51.142 569 244 12 7 555 35 589 0.0 536
MS.gene07716.t1 AT5G09590 46.416 558 274 14 10 560 60 599 3.79e-149 447
MS.gene07716.t1 AT4G37910 45.601 557 280 11 10 560 55 594 7.97e-146 438
MS.gene07716.t1 AT4G37910 45.601 557 280 11 10 560 55 594 7.97e-146 438
MS.gene07716.t1 AT4G24280 44.286 560 290 11 8 561 79 622 2.49e-144 436
MS.gene07716.t1 AT5G49910 44.643 560 288 11 8 561 79 622 7.87e-144 434
MS.gene07716.t1 AT2G32120 33.463 514 309 12 9 508 30 524 7.69e-80 263
MS.gene07716.t1 AT2G32120 33.463 514 309 12 9 508 30 524 7.69e-80 263
MS.gene07716.t1 AT1G79930 32.522 452 285 6 10 445 4 451 3.21e-76 259
MS.gene07716.t1 AT1G79930 32.522 452 285 6 10 445 4 451 6.81e-76 259
MS.gene07716.t1 AT1G79920 32.522 452 285 6 10 445 4 451 4.07e-75 254
MS.gene07716.t1 AT1G79920 32.522 452 285 6 10 445 4 451 4.07e-75 254
MS.gene07716.t1 AT1G79920 32.522 452 285 6 10 445 4 451 4.07e-75 254
MS.gene07716.t1 AT1G79920 32.522 452 285 6 10 445 4 451 4.56e-75 254
MS.gene07716.t1 AT1G11660 34.321 405 258 6 10 411 4 403 5.33e-72 247
MS.gene07716.t1 AT1G11660 34.321 405 258 6 10 411 4 403 5.33e-72 247
MS.gene07716.t1 AT1G11660 34.321 405 258 6 10 411 4 403 5.33e-72 247
MS.gene07716.t1 AT1G11660 34.688 369 235 4 46 411 1 366 1.20e-65 229
MS.gene07716.t1 AT4G16660 27.290 524 340 13 6 495 23 539 4.40e-58 210
MS.gene07716.t1 AT4G16660 27.290 524 340 13 6 495 47 563 6.32e-58 209

Find 141 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAATAGTTCCTGCACTTT+TGG 0.163788 2.4:+51242061 None:intergenic
GGAGATTGCAGAGGCTTATT+TGG 0.170727 2.4:-51242713 MS.gene07716:CDS
ATGGATGCTGGTGCCATTGC+TGG 0.234093 2.4:-51242622 MS.gene07716:CDS
CCTGATGAGGCTGTTGCTTA+TGG 0.243454 2.4:-51241998 MS.gene07716:CDS
GTGTCTCTCCTCACAATTAA+AGG 0.259274 2.4:-51242472 MS.gene07716:CDS
TCAGATGCTAAGAGGTTAAT+TGG 0.263493 2.4:-51242898 MS.gene07716:intron
TTTGAAGTTAAAGCCACTTC+TGG 0.288192 2.4:-51242442 MS.gene07716:CDS
AAGGACACTCTCTTTCAAAT+TGG 0.288998 2.4:-51242278 MS.gene07716:CDS
ACTTTGTGCAAGAATTTAAT+AGG 0.318140 2.4:-51242372 MS.gene07716:CDS
ATGACTGCATTTACAAGTTA+AGG 0.328913 2.4:-51241466 MS.gene07716:CDS
AAGGAATGCTCTAAAGAATA+AGG 0.330434 2.4:-51241447 MS.gene07716:CDS
TATCTTTAGAAGTAAGATAT+TGG 0.330640 2.4:+51241813 None:intergenic
TCTTCATACACTCATTAAAA+AGG 0.345773 2.4:+51242167 None:intergenic
GGATAACCTTTCTTTGTCAT+TGG 0.352083 2.4:+51241583 None:intergenic
AACGCACAAAACACCGTCTT+TGG 0.355144 2.4:-51243758 MS.gene07716:intron
TGGCCGTTCAAGGTTATTGC+TGG 0.368855 2.4:-51242832 MS.gene07716:CDS
TACATGATATTGTTCTTGTC+GGG 0.378162 2.4:-51242099 MS.gene07716:CDS
CTGATGAGGCTGTTGCTTAT+GGG 0.384178 2.4:-51241997 MS.gene07716:CDS
CTACAATCAAGGCACTATAT+TGG 0.386508 2.4:+51241789 None:intergenic
CATATTCATGTGTTGGTGTT+TGG 0.387460 2.4:-51243907 MS.gene07716:CDS
CTCAACCTCCTCAAGGCTCT+TGG 0.389032 2.4:+51242322 None:intergenic
ACGTCTCGCAGCACCAAGTT+TGG 0.390269 2.4:+51241929 None:intergenic
CCATAAGCAACAGCCTCATC+AGG 0.390857 2.4:+51241998 None:intergenic
CATTAAGAATGTTCCAAACT+TGG 0.396244 2.4:-51241942 MS.gene07716:CDS
CCCATTGTCACTTGGTATCT+CGG 0.399514 2.4:-51241903 MS.gene07716:CDS
TGAGATTGATTATTTATATG+AGG 0.407076 2.4:-51242245 MS.gene07716:CDS
GTACATGATATTGTTCTTGT+CGG 0.419451 2.4:-51242100 MS.gene07716:CDS
TCATTACCTTGGCCTTCCTT+AGG 0.431184 2.4:+51241498 None:intergenic
TATATTGTTGTGGCCGTTCA+AGG 0.432647 2.4:-51242842 MS.gene07716:CDS
CCGAGATACCAAGTGACAAT+GGG 0.444390 2.4:+51241903 None:intergenic
CTATTGCGTAACTTCTTCAA+TGG 0.452833 2.4:-51242046 MS.gene07716:CDS
TAAATAATCAATCTCAATAG+TGG 0.454560 2.4:+51242252 None:intergenic
TTGTCTTTGATCTTGGTGGT+GGG 0.456314 2.4:-51242504 MS.gene07716:CDS
TGATTATCCTCACAACGTTA+AGG 0.457564 2.4:+51242599 None:intergenic
TTTGTCTTTGATCTTGGTGG+TGG 0.458128 2.4:-51242505 MS.gene07716:CDS
GTTGAGAACTTCTTGTGAAA+AGG 0.462126 2.4:-51242305 MS.gene07716:CDS
ACTGCTGCAGCTATTGCATA+TGG 0.476452 2.4:-51242568 MS.gene07716:CDS
CTTCTGGAAACACTCACCTC+GGG 0.477285 2.4:-51242426 MS.gene07716:CDS
TGTTCCTCGTGGCCATCCCT+TGG 0.477913 2.4:-51241693 MS.gene07716:CDS
TTTAGAAGTAAGATATTGGC+TGG 0.480975 2.4:+51241817 None:intergenic
TATTGCGTAACTTCTTCAAT+GGG 0.481757 2.4:-51242045 MS.gene07716:CDS
TTCTTGAGGATCATCTGAAA+GGG 0.487611 2.4:-51241319 MS.gene07716:CDS
ATCTAATGCATTCATTACCT+TGG 0.490089 2.4:+51241487 None:intergenic
TTATGAGTGTGGTGATTCCT+AGG 0.490594 2.4:-51241865 MS.gene07716:CDS
CTTCTTGTGAAAAGGCGAAA+AGG 0.494676 2.4:-51242297 MS.gene07716:CDS
TGAGAATCGTTAAAATAAGC+AGG 0.500441 2.4:+51242658 None:intergenic
GGATGGCCACGAGGAACACT+TGG 0.501644 2.4:+51241698 None:intergenic
TTCATGTGTTGGTGTTTGGT+TGG 0.501933 2.4:-51243903 MS.gene07716:CDS
CGAAAAGCCACCATGGATGC+TGG 0.502548 2.4:-51242634 MS.gene07716:CDS
TTTCACTGATGCTCAAAGGT+TGG 0.504490 2.4:-51243813 MS.gene07716:CDS
TATTGGCTGGTCTTCTTGAA+AGG 0.508102 2.4:+51241830 None:intergenic
ACGAGGAACACTTGGAAGAC+CGG 0.508128 2.4:+51241706 None:intergenic
GTTGGTCGGTGGTGCTGCTA+AGG 0.508209 2.4:-51243795 MS.gene07716:CDS
GAGATTATCCACAACGATGA+AGG 0.511349 2.4:-51243863 MS.gene07716:CDS
GCCTTGATTGTAGTTTGTGA+GGG 0.515295 2.4:-51241779 MS.gene07716:CDS
TGATGAGGCTGTTGCTTATG+GGG 0.522303 2.4:-51241996 MS.gene07716:CDS
AAAATTGATTCAAGAAGCTA+AGG 0.522479 2.4:-51241546 MS.gene07716:CDS
TGCTTTGCTATCGATGAAAA+CGG 0.522627 2.4:-51241665 MS.gene07716:CDS
TTGCTTTCACTGATGCTCAA+AGG 0.524988 2.4:-51243817 MS.gene07716:CDS
ATGCTAAGAGGTTAATTGGT+AGG 0.525498 2.4:-51242894 MS.gene07716:CDS
CGATAACCAATGACAAAGAA+AGG 0.526916 2.4:-51241589 MS.gene07716:CDS
GTCTAGGATTCCAAAAGTGC+AGG 0.534926 2.4:-51242071 MS.gene07716:CDS
GAACATCTACTTCATTCCCC+TGG 0.535646 2.4:+51241339 None:intergenic
ACTAGCCAGTCTTGATTACA+AGG 0.537318 2.4:+51241276 None:intergenic
GAGGTGAGTGTTTCCAGAAG+TGG 0.537456 2.4:+51242429 None:intergenic
AAAGGTACAGAAGTGTTCCT+AGG 0.538214 2.4:+51241848 None:intergenic
ACCCTCACAAACTACAATCA+AGG 0.539796 2.4:+51241778 None:intergenic
AGCAATGGCACCAGCATCCA+TGG 0.539868 2.4:+51242624 None:intergenic
TGCCTTGATTGTAGTTTGTG+AGG 0.542190 2.4:-51241780 MS.gene07716:CDS
GACGTTACCCCATTGTCACT+TGG 0.546373 2.4:-51241911 MS.gene07716:CDS
TCAGTGAAAGCAACAAAAGA+AGG 0.546424 2.4:+51243827 None:intergenic
GTGAGTGACAACAACATGCT+TGG 0.547808 2.4:-51241743 MS.gene07716:CDS
CGTGCAGTGGGAATCGACCT+TGG 0.550120 2.4:-51243935 MS.gene07716:CDS
TTGTAGTTTGTGAGGGTGAG+AGG 0.551491 2.4:-51241772 MS.gene07716:CDS
AGAGGCTTATTTGGAATCAC+CGG 0.553942 2.4:-51242704 MS.gene07716:CDS
GTTCTTGAGGATCATCTGAA+AGG 0.557323 2.4:-51241320 MS.gene07716:CDS
GATCTCATTCTTACTTCCAG+TGG 0.560329 2.4:+51241613 None:intergenic
TCTGCAGAGGAAAGATCCAC+TGG 0.563089 2.4:-51241629 MS.gene07716:CDS
ACATGATATTGTTCTTGTCG+GGG 0.563522 2.4:-51242098 MS.gene07716:CDS
GAAAGGGCTTGAGAGTATGT+TGG 0.565506 2.4:-51241303 MS.gene07716:CDS
GAACACCTTGTAATCAAGAC+TGG 0.565696 2.4:-51241281 MS.gene07716:CDS
AAACATGAAGGTCGTGCAGT+GGG 0.567739 2.4:-51243947 MS.gene07716:CDS
GATTGTTGAAAGTTGTCTTG+TGG 0.568361 2.4:-51242146 MS.gene07716:CDS
CAATCTCCTTCATGTTTGTG+AGG 0.570747 2.4:+51242728 None:intergenic
GCGTAACTTCTTCAATGGGA+AGG 0.571597 2.4:-51242041 MS.gene07716:CDS
TACGATTAGTGTTAAGTACA+AGG 0.571844 2.4:-51242794 MS.gene07716:CDS
GGAATTTCTCATCTTCAGCA+TGG 0.578307 2.4:+51241519 None:intergenic
TGTAGTTTGTGAGGGTGAGA+GGG 0.579578 2.4:-51241771 MS.gene07716:CDS
CATGATATTGTTCTTGTCGG+GGG 0.579632 2.4:-51242097 MS.gene07716:CDS
TAGTGTTAAGTACAAGGGTG+AGG 0.581461 2.4:-51242788 MS.gene07716:CDS
ACTGATGCTCAAAGGTTGGT+CGG 0.583319 2.4:-51243809 MS.gene07716:CDS
ACTTCTGGAAACACTCACCT+CGG 0.583908 2.4:-51242427 MS.gene07716:CDS
TTGCTGGCCTTAACGTTGTG+AGG 0.589688 2.4:-51242606 MS.gene07716:CDS
GAATAGAAATATACCAAAGA+CGG 0.590465 2.4:+51243745 None:intergenic
ACCGAGATACCAAGTGACAA+TGG 0.590955 2.4:+51241902 None:intergenic
TTGTACTTAACACTAATCGT+AGG 0.591476 2.4:+51242796 None:intergenic
CTGAAGATGAGAAATTCCTA+AGG 0.592200 2.4:-51241514 MS.gene07716:CDS
ATATGCAATAGCTGCAGCAG+TGG 0.594040 2.4:+51242570 None:intergenic
CATCTTAACTGTTTCTGCAG+AGG 0.599860 2.4:-51241642 MS.gene07716:CDS
CTTCATGTTTGTGAGGACAA+TGG 0.600128 2.4:+51242735 None:intergenic
AGAACAAAGTGGATATCACT+AGG 0.600332 2.4:-51242348 MS.gene07716:CDS
TATGCAATAGCTGCAGCAGT+GGG 0.602359 2.4:+51242571 None:intergenic
GACAATGGATGAGATTTCCT+CGG 0.602552 2.4:+51242750 None:intergenic
AGATGAGAAATTCCTAAGGA+AGG 0.602756 2.4:-51241510 MS.gene07716:CDS
CACATGAATATGTTGTTCCA+AGG 0.603031 2.4:+51243918 None:intergenic
CATTGTCCTCACAAACATGA+AGG 0.603324 2.4:-51242734 MS.gene07716:CDS
TTGCTTCATAAGAATAACCA+GGG 0.605023 2.4:-51241356 MS.gene07716:CDS
GATAGCAAAGCATACATCCA+AGG 0.607442 2.4:+51241676 None:intergenic
CACAACGTTAAGGCCAGCAA+TGG 0.608818 2.4:+51242609 None:intergenic
ATTTAATAGGAAGAACAAAG+TGG 0.609345 2.4:-51242359 MS.gene07716:CDS
GGAACAACATATTCATGTGT+TGG 0.609685 2.4:-51243914 MS.gene07716:CDS
TTTGCTTCATAAGAATAACC+AGG 0.610100 2.4:-51241357 MS.gene07716:CDS
AGACATCACCTTTAATTGTG+AGG 0.611395 2.4:+51242464 None:intergenic
ACACCAGCAATAACCTTGAA+CGG 0.614534 2.4:+51242829 None:intergenic
GAATGAAGTAGATGTTCTTG+AGG 0.618161 2.4:-51241333 MS.gene07716:CDS
ATAGCAAAGCATACATCCAA+GGG 0.619096 2.4:+51241677 None:intergenic
TTCTCAGCGAAAAGCCACCA+TGG 0.620029 2.4:-51242641 MS.gene07716:CDS
AAAACATGAAGGTCGTGCAG+TGG 0.622170 2.4:-51243948 MS.gene07716:CDS
TTCTGGAAACACTCACCTCG+GGG 0.622900 2.4:-51242425 MS.gene07716:CDS
CAAAGCATACATCCAAGGGA+TGG 0.629656 2.4:+51241681 None:intergenic
CAAGTTTGAAGAAATCAACA+TGG 0.636916 2.4:-51242191 MS.gene07716:CDS
CATAAGCAACAGCCTCATCA+GGG 0.640869 2.4:+51241999 None:intergenic
AGAAGTTCTCAACCTCCTCA+AGG 0.646239 2.4:+51242315 None:intergenic
GGAGAAGCTCCTTTGTGCCG+AGG 0.650523 2.4:-51242767 MS.gene07716:CDS
GACAAAAGAAGTAATTGTGA+TGG 0.650690 2.4:-51242541 MS.gene07716:CDS
ATGAGATTTCCTCGGCACAA+AGG 0.653122 2.4:+51242758 None:intergenic
CTAGGAATCCAAGAGCCTTG+AGG 0.655232 2.4:-51242330 MS.gene07716:CDS
CAAGAGCATCAACCCTGATG+AGG 0.657948 2.4:-51242011 MS.gene07716:CDS
GAAATTCCTAAGGAAGGCCA+AGG 0.662766 2.4:-51241504 MS.gene07716:CDS
GGAATCCAAGAGCCTTGAGG+AGG 0.663076 2.4:-51242327 MS.gene07716:CDS
GATCAATCGTGCAATTACTG+TGG 0.674376 2.4:-51241387 MS.gene07716:CDS
ACGATTAGTGTTAAGTACAA+GGG 0.676520 2.4:-51242793 MS.gene07716:CDS
TAATGATCGTATTATGAGTG+TGG 0.677159 2.4:-51241876 MS.gene07716:CDS
AAACATGAAGGAGATTGCAG+AGG 0.695775 2.4:-51242722 MS.gene07716:CDS
ACATCCAAGGGATGGCCACG+AGG 0.704531 2.4:+51241689 None:intergenic
GATGCTCAAAGGTTGGTCGG+TGG 0.706549 2.4:-51243806 MS.gene07716:CDS
CGAGATACCAAGTGACAATG+GGG 0.706870 2.4:+51241904 None:intergenic
GGTCTTCCAAGTGTTCCTCG+TGG 0.707924 2.4:-51241704 MS.gene07716:CDS
TGCTTCATAAGAATAACCAG+GGG 0.713870 2.4:-51241355 MS.gene07716:CDS
TCTGGAAACACTCACCTCGG+GGG 0.720115 2.4:-51242424 MS.gene07716:CDS
AATGGCACCAGCATCCATGG+TGG 0.736459 2.4:+51242627 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAAATTATTTGAGTT+AGG - chr2.4:51241630-51241649 MS.gene07716:CDS 10.0%
!! ATAGATGGATAAATAAATAA+AGG - chr2.4:51242040-51242059 MS.gene07716:CDS 15.0%
!! ATGAATTAATATATATGTAG+CGG - chr2.4:51242166-51242185 MS.gene07716:CDS 15.0%
!! ATGAGTAAATATTAAAAGAT+TGG + chr2.4:51241515-51241534 None:intergenic 15.0%
!! TAAAGAAAAACAATTTCTTT+GGG + chr2.4:51241845-51241864 None:intergenic 15.0%
!! GTAAAGAAAAACAATTTCTT+TGG + chr2.4:51241846-51241865 None:intergenic 20.0%
!! TAAATAATCAATCTCAATAG+TGG + chr2.4:51242984-51243003 None:intergenic 20.0%
!! TGAGATTGATTATTTATATG+AGG - chr2.4:51242988-51243007 MS.gene07716:intron 20.0%
!! TTCAAAAAGATATATTGTTG+TGG - chr2.4:51242381-51242400 MS.gene07716:CDS 20.0%
!!! AATATATCTTTTTGAACAAC+GGG + chr2.4:51242377-51242396 None:intergenic 20.0%
!!! AATATTTTTGTCTTTGATCT+TGG - chr2.4:51242722-51242741 MS.gene07716:CDS 20.0%
!!! CAATATATCTTTTTGAACAA+CGG + chr2.4:51242378-51242397 None:intergenic 20.0%
!!! TATCTTTAGAAGTAAGATAT+TGG + chr2.4:51243423-51243442 None:intergenic 20.0%
!!! TGATTCTTTATTTTCAAATG+TGG - chr2.4:51241669-51241688 MS.gene07716:CDS 20.0%
!!! TTAAAGTTGATCATAATAGA+TGG - chr2.4:51242025-51242044 MS.gene07716:CDS 20.0%
!!! TTTTATTCTTTTGAGAAGAA+AGG + chr2.4:51243825-51243844 None:intergenic 20.0%
! ACTTTGTGCAAGAATTTAAT+AGG - chr2.4:51242861-51242880 MS.gene07716:CDS 25.0%
! ATTTAATAGGAAGAACAAAG+TGG - chr2.4:51242874-51242893 MS.gene07716:CDS 25.0%
! ATTTACTCATATTGTAGCTT+AGG - chr2.4:51241525-51241544 MS.gene07716:CDS 25.0%
! GAATAGAAATATACCAAAGA+CGG + chr2.4:51241491-51241510 None:intergenic 25.0%
! TCTTCATACACTCATTAAAA+AGG + chr2.4:51243069-51243088 None:intergenic 25.0%
!! AAAATTGATTCAAGAAGCTA+AGG - chr2.4:51243687-51243706 MS.gene07716:intron 25.0%
!! ATATATCTTTTTGAACAACG+GGG + chr2.4:51242376-51242395 None:intergenic 25.0%
ACGATTAGTGTTAAGTACAA+GGG - chr2.4:51242440-51242459 MS.gene07716:CDS 30.0%
ATAGGTCGTAAGTTAGATTA+TGG - chr2.4:51242226-51242245 MS.gene07716:CDS 30.0%
ATCTAATGCATTCATTACCT+TGG + chr2.4:51243749-51243768 None:intergenic 30.0%
ATGACTGCATTTACAAGTTA+AGG - chr2.4:51243767-51243786 MS.gene07716:CDS 30.0%
CAAGTTTGAAGAAATCAACA+TGG - chr2.4:51243042-51243061 MS.gene07716:intron 30.0%
CATTAAGAATGTTCCAAACT+TGG - chr2.4:51243291-51243310 MS.gene07716:intron 30.0%
CTGATTGTATAACACATAAG+AGG - chr2.4:51241889-51241908 MS.gene07716:CDS 30.0%
GACAAAAGAAGTAATTGTGA+TGG - chr2.4:51242692-51242711 MS.gene07716:CDS 30.0%
GTACATGATATTGTTCTTGT+CGG - chr2.4:51243133-51243152 MS.gene07716:intron 30.0%
TAATGATCGTATTATGAGTG+TGG - chr2.4:51243357-51243376 MS.gene07716:intron 30.0%
TACATGATATTGTTCTTGTC+GGG - chr2.4:51243134-51243153 MS.gene07716:intron 30.0%
TACGATTAGTGTTAAGTACA+AGG - chr2.4:51242439-51242458 MS.gene07716:CDS 30.0%
TATGACCATGTTAAAGAAAC+AGG - chr2.4:51242276-51242295 MS.gene07716:CDS 30.0%
TATTGCGTAACTTCTTCAAT+GGG - chr2.4:51243188-51243207 MS.gene07716:intron 30.0%
TGAGAATCGTTAAAATAAGC+AGG + chr2.4:51242578-51242597 None:intergenic 30.0%
TTGCTTCATAAGAATAACCA+GGG - chr2.4:51243877-51243896 MS.gene07716:CDS 30.0%
TTGTACTTAACACTAATCGT+AGG + chr2.4:51242440-51242459 None:intergenic 30.0%
TTTAGAAGTAAGATATTGGC+TGG + chr2.4:51243419-51243438 None:intergenic 30.0%
TTTGCTTCATAAGAATAACC+AGG - chr2.4:51243876-51243895 MS.gene07716:CDS 30.0%
! ATTCACCTGTTTCTTTAACA+TGG + chr2.4:51242284-51242303 None:intergenic 30.0%
! ATTTTTGTCTTTGATCTTGG+TGG - chr2.4:51242725-51242744 MS.gene07716:CDS 30.0%
! CACAATTACTTCTTTTGTCA+AGG + chr2.4:51242691-51242710 None:intergenic 30.0%
!! AAGGAATGCTCTAAAGAATA+AGG - chr2.4:51243786-51243805 MS.gene07716:CDS 30.0%
!! CAATTTTTCAATTTCGACTC+TGG + chr2.4:51243674-51243693 None:intergenic 30.0%
!!! ACTTTTGAAACTACGATATG+TGG + chr2.4:51241962-51241981 None:intergenic 30.0%
!!! ATAAAGTTTTGTTGTGACAG+TGG - chr2.4:51241698-51241717 MS.gene07716:CDS 30.0%
!!! TTTTTTCTTCAGATGCTAAG+AGG - chr2.4:51242327-51242346 MS.gene07716:CDS 30.0%
AAGGACACTCTCTTTCAAAT+TGG - chr2.4:51242955-51242974 MS.gene07716:intron 35.0%
AAGGTCCTAGATTCAAACAT+GGG - chr2.4:51241588-51241607 MS.gene07716:CDS 35.0%
ACATGATATTGTTCTTGTCG+GGG - chr2.4:51243135-51243154 MS.gene07716:intron 35.0%
AGAACAAAGTGGATATCACT+AGG - chr2.4:51242885-51242904 MS.gene07716:CDS 35.0%
AGACATCACCTTTAATTGTG+AGG + chr2.4:51242772-51242791 None:intergenic 35.0%
AGATGAGAAATTCCTAAGGA+AGG - chr2.4:51243723-51243742 MS.gene07716:intron 35.0%
ATAGCAAAGCATACATCCAA+GGG + chr2.4:51243559-51243578 None:intergenic 35.0%
ATGCTAAGAGGTTAATTGGT+AGG - chr2.4:51242339-51242358 MS.gene07716:CDS 35.0%
CACATGAATATGTTGTTCCA+AGG + chr2.4:51241318-51241337 None:intergenic 35.0%
CGATAACCAATGACAAAGAA+AGG - chr2.4:51243644-51243663 MS.gene07716:intron 35.0%
CTATTGCGTAACTTCTTCAA+TGG - chr2.4:51243187-51243206 MS.gene07716:intron 35.0%
CTGAAGATGAGAAATTCCTA+AGG - chr2.4:51243719-51243738 MS.gene07716:intron 35.0%
GAATGAAGTAGATGTTCTTG+AGG - chr2.4:51243900-51243919 MS.gene07716:CDS 35.0%
GATTGTTGAAAGTTGTCTTG+TGG - chr2.4:51243087-51243106 MS.gene07716:intron 35.0%
GGAACAACATATTCATGTGT+TGG - chr2.4:51241319-51241338 MS.gene07716:CDS 35.0%
GGACAATTAAGACAAATGTC+TGG - chr2.4:51241918-51241937 MS.gene07716:CDS 35.0%
GGATAACCTTTCTTTGTCAT+TGG + chr2.4:51243653-51243672 None:intergenic 35.0%
GTTGAGAACTTCTTGTGAAA+AGG - chr2.4:51242928-51242947 MS.gene07716:intron 35.0%
TCAGATGCTAAGAGGTTAAT+TGG - chr2.4:51242335-51242354 MS.gene07716:CDS 35.0%
TCAGTGAAAGCAACAAAAGA+AGG + chr2.4:51241409-51241428 None:intergenic 35.0%
TGATTATCCTCACAACGTTA+AGG + chr2.4:51242637-51242656 None:intergenic 35.0%
TGCTTCATAAGAATAACCAG+GGG - chr2.4:51243878-51243897 MS.gene07716:CDS 35.0%
TGTGTTATACAATCAGACAC+CGG + chr2.4:51241885-51241904 None:intergenic 35.0%
TTCTTGAGGATCATCTGAAA+GGG - chr2.4:51243914-51243933 MS.gene07716:CDS 35.0%
TTCTTTACTTCGACACTTCT+TGG - chr2.4:51241858-51241877 MS.gene07716:CDS 35.0%
! CATATTCATGTGTTGGTGTT+TGG - chr2.4:51241326-51241345 MS.gene07716:CDS 35.0%
! CTACAATCAAGGCACTATAT+TGG + chr2.4:51243447-51243466 None:intergenic 35.0%
! GTGACAACTGCATTTTTAAC+CGG + chr2.4:51242551-51242570 None:intergenic 35.0%
! TGCTTTGCTATCGATGAAAA+CGG - chr2.4:51243568-51243587 MS.gene07716:intron 35.0%
! TTTGAAGTTAAAGCCACTTC+TGG - chr2.4:51242791-51242810 MS.gene07716:CDS 35.0%
!!! CTTGGTTTTTTCAGTCTTTC+CGG - chr2.4:51243508-51243527 MS.gene07716:intron 35.0%
AAACATGAAGGAGATTGCAG+AGG - chr2.4:51242511-51242530 MS.gene07716:CDS 40.0%
AACTTACGACCTATGAAGCA+TGG + chr2.4:51242220-51242239 None:intergenic 40.0%
ACACCAGCAATAACCTTGAA+CGG + chr2.4:51242407-51242426 None:intergenic 40.0%
ACCCTCACAAACTACAATCA+AGG + chr2.4:51243458-51243477 None:intergenic 40.0%
ATAACACATAAGAGGCGAGT+TGG - chr2.4:51241897-51241916 MS.gene07716:CDS 40.0%
CAAGAAACGTTGATCAACGA+GGG - chr2.4:51241993-51242012 MS.gene07716:CDS 40.0%
CAAGGTCCTAGATTCAAACA+TGG - chr2.4:51241587-51241606 MS.gene07716:CDS 40.0%
CAATCTCCTTCATGTTTGTG+AGG + chr2.4:51242508-51242527 None:intergenic 40.0%
CATGATATTGTTCTTGTCGG+GGG - chr2.4:51243136-51243155 MS.gene07716:intron 40.0%
CATTGTCCTCACAAACATGA+AGG - chr2.4:51242499-51242518 MS.gene07716:CDS 40.0%
CTTCACCCATGTTTGAATCT+AGG + chr2.4:51241596-51241615 None:intergenic 40.0%
CTTCATGTTTGTGAGGACAA+TGG + chr2.4:51242501-51242520 None:intergenic 40.0%
CTTCTTGTGAAAAGGCGAAA+AGG - chr2.4:51242936-51242955 MS.gene07716:intron 40.0%
GAACACCTTGTAATCAAGAC+TGG - chr2.4:51243952-51243971 MS.gene07716:CDS 40.0%
GACAATGGATGAGATTTCCT+CGG + chr2.4:51242486-51242505 None:intergenic 40.0%
GAGATTATCCACAACGATGA+AGG - chr2.4:51241370-51241389 MS.gene07716:CDS 40.0%
GATAGCAAAGCATACATCCA+AGG + chr2.4:51243560-51243579 None:intergenic 40.0%
GATCAATCGTGCAATTACTG+TGG - chr2.4:51243846-51243865 MS.gene07716:CDS 40.0%
GATCTCATTCTTACTTCCAG+TGG + chr2.4:51243623-51243642 None:intergenic 40.0%
GCTTCATAGGTTACGACATT+GGG + chr2.4:51241736-51241755 None:intergenic 40.0%
GGAATTTCTCATCTTCAGCA+TGG + chr2.4:51243717-51243736 None:intergenic 40.0%
GTGTCTCTCCTCACAATTAA+AGG - chr2.4:51242761-51242780 MS.gene07716:CDS 40.0%
GTTCTTGAGGATCATCTGAA+AGG - chr2.4:51243913-51243932 MS.gene07716:CDS 40.0%
TAGTGTTAAGTACAAGGGTG+AGG - chr2.4:51242445-51242464 MS.gene07716:CDS 40.0%
TATATTGTTGTGGCCGTTCA+AGG - chr2.4:51242391-51242410 MS.gene07716:CDS 40.0%
TATGAAGCATAGACACCTCT+AGG - chr2.4:51241748-51241767 MS.gene07716:CDS 40.0%
TCAAGAAACGTTGATCAACG+AGG - chr2.4:51241992-51242011 MS.gene07716:CDS 40.0%
TGCTTCATAGGTTACGACAT+TGG + chr2.4:51241737-51241756 None:intergenic 40.0%
TTATGAGTGTGGTGATTCCT+AGG - chr2.4:51243368-51243387 MS.gene07716:intron 40.0%
TTGCTTTCACTGATGCTCAA+AGG - chr2.4:51241416-51241435 MS.gene07716:CDS 40.0%
TTTCACTGATGCTCAAAGGT+TGG - chr2.4:51241420-51241439 MS.gene07716:CDS 40.0%
TTTGTCTTTGATCTTGGTGG+TGG - chr2.4:51242728-51242747 MS.gene07716:CDS 40.0%
! AGAGGCTTATTTGGAATCAC+CGG - chr2.4:51242529-51242548 MS.gene07716:CDS 40.0%
! GCCTTGATTGTAGTTTGTGA+GGG - chr2.4:51243454-51243473 MS.gene07716:intron 40.0%
! TGCCTTGATTGTAGTTTGTG+AGG - chr2.4:51243453-51243472 MS.gene07716:intron 40.0%
! TTCATGTGTTGGTGTTTGGT+TGG - chr2.4:51241330-51241349 MS.gene07716:CDS 40.0%
! TTGTCTTTGATCTTGGTGGT+GGG - chr2.4:51242729-51242748 MS.gene07716:CDS 40.0%
! TTTTGTTGCCTTCATCGTTG+TGG + chr2.4:51241381-51241400 None:intergenic 40.0%
!! AAAGGTACAGAAGTGTTCCT+AGG + chr2.4:51243388-51243407 None:intergenic 40.0%
!! CATCTTAACTGTTTCTGCAG+AGG - chr2.4:51243591-51243610 MS.gene07716:intron 40.0%
!! TAGAGGTGTCTATGCTTCAT+AGG + chr2.4:51241749-51241768 None:intergenic 40.0%
!! TATTGGCTGGTCTTCTTGAA+AGG + chr2.4:51243406-51243425 None:intergenic 40.0%
AAAACATGAAGGTCGTGCAG+TGG - chr2.4:51241285-51241304 MS.gene07716:CDS 45.0%
AAACATGAAGGTCGTGCAGT+GGG - chr2.4:51241286-51241305 MS.gene07716:CDS 45.0%
AACGCACAAAACACCGTCTT+TGG - chr2.4:51241475-51241494 MS.gene07716:CDS 45.0%
ACCGAGATACCAAGTGACAA+TGG + chr2.4:51243334-51243353 None:intergenic 45.0%
ACGTGTCATGCGAATGTCAT+AGG + chr2.4:51241800-51241819 None:intergenic 45.0%
ACTGCTGCAGCTATTGCATA+TGG - chr2.4:51242665-51242684 MS.gene07716:CDS 45.0%
AGAAGTTCTCAACCTCCTCA+AGG + chr2.4:51242921-51242940 None:intergenic 45.0%
ATATGCAATAGCTGCAGCAG+TGG + chr2.4:51242666-51242685 None:intergenic 45.0%
ATGAGATTTCCTCGGCACAA+AGG + chr2.4:51242478-51242497 None:intergenic 45.0%
CAAAGCATACATCCAAGGGA+TGG + chr2.4:51243555-51243574 None:intergenic 45.0%
CATAAGCAACAGCCTCATCA+GGG + chr2.4:51243237-51243256 None:intergenic 45.0%
CCGAGATACCAAGTGACAAT+GGG + chr2.4:51243333-51243352 None:intergenic 45.0%
CGAGATACCAAGTGACAATG+GGG + chr2.4:51243332-51243351 None:intergenic 45.0%
GAAATTCCTAAGGAAGGCCA+AGG - chr2.4:51243729-51243748 MS.gene07716:intron 45.0%
GAACATCTACTTCATTCCCC+TGG + chr2.4:51243897-51243916 None:intergenic 45.0%
GCGTAACTTCTTCAATGGGA+AGG - chr2.4:51243192-51243211 MS.gene07716:intron 45.0%
GGAGATTGCAGAGGCTTATT+TGG - chr2.4:51242520-51242539 MS.gene07716:CDS 45.0%
GTGAGTGACAACAACATGCT+TGG - chr2.4:51243490-51243509 MS.gene07716:intron 45.0%
TACTTCGACACTTCTTGGAC+CGG - chr2.4:51241863-51241882 MS.gene07716:CDS 45.0%
TATGCAATAGCTGCAGCAGT+GGG + chr2.4:51242665-51242684 None:intergenic 45.0%
TTCGTGTCAAGTGTTTGCGT+TGG - chr2.4:51242191-51242210 MS.gene07716:CDS 45.0%
! ACTGATGCTCAAAGGTTGGT+CGG - chr2.4:51241424-51241443 MS.gene07716:CDS 45.0%
! ACTTCTGGAAACACTCACCT+CGG - chr2.4:51242806-51242825 MS.gene07716:CDS 45.0%
! CCCATTGTCACTTGGTATCT+CGG - chr2.4:51243330-51243349 MS.gene07716:intron 45.0%
! CGCAATAGTTCCTGCACTTT+TGG + chr2.4:51243175-51243194 None:intergenic 45.0%
! CTGATGAGGCTGTTGCTTAT+GGG - chr2.4:51243236-51243255 MS.gene07716:intron 45.0%
! GAAAGGGCTTGAGAGTATGT+TGG - chr2.4:51243930-51243949 MS.gene07716:CDS 45.0%
! GTCTAGGATTCCAAAAGTGC+AGG - chr2.4:51243162-51243181 MS.gene07716:intron 45.0%
! GTTTGAATCTAGGACCTTGC+AGG + chr2.4:51241586-51241605 None:intergenic 45.0%
! TCATTACCTTGGCCTTCCTT+AGG + chr2.4:51243738-51243757 None:intergenic 45.0%
! TGATGAGGCTGTTGCTTATG+GGG - chr2.4:51243237-51243256 MS.gene07716:intron 45.0%
! TGTAGTTTGTGAGGGTGAGA+GGG - chr2.4:51243462-51243481 MS.gene07716:intron 45.0%
! TTGTAGTTTGTGAGGGTGAG+AGG - chr2.4:51243461-51243480 MS.gene07716:intron 45.0%
!!! TAATTTTTAAATTGTTAAAT+TGG + chr2.4:51241622-51241641 None:intergenic 5.0%
ACGAGGAACACTTGGAAGAC+CGG + chr2.4:51243530-51243549 None:intergenic 50.0%
CACAACGTTAAGGCCAGCAA+TGG + chr2.4:51242627-51242646 None:intergenic 50.0%
CCATAAGCAACAGCCTCATC+AGG + chr2.4:51243238-51243257 None:intergenic 50.0%
CGTTGGAGTCCATGCTTCAT+AGG - chr2.4:51242208-51242227 MS.gene07716:CDS 50.0%
CTAGGAATCCAAGAGCCTTG+AGG - chr2.4:51242903-51242922 MS.gene07716:intron 50.0%
GACGTTACCCCATTGTCACT+TGG - chr2.4:51243322-51243341 MS.gene07716:intron 50.0%
GAGGTGAGTGTTTCCAGAAG+TGG + chr2.4:51242807-51242826 None:intergenic 50.0%
TCTGCAGAGGAAAGATCCAC+TGG - chr2.4:51243604-51243623 MS.gene07716:intron 50.0%
TGGCCGTTCAAGGTTATTGC+TGG - chr2.4:51242401-51242420 MS.gene07716:CDS 50.0%
TTCTCAGCGAAAAGCCACCA+TGG - chr2.4:51242592-51242611 MS.gene07716:CDS 50.0%
! CCTGATGAGGCTGTTGCTTA+TGG - chr2.4:51243235-51243254 MS.gene07716:intron 50.0%
! CTTCTGGAAACACTCACCTC+GGG - chr2.4:51242807-51242826 MS.gene07716:CDS 50.0%
! TTCTGGAAACACTCACCTCG+GGG - chr2.4:51242808-51242827 MS.gene07716:CDS 50.0%
!! ACCTCTAGGACTACGTGTGT+CGG - chr2.4:51241762-51241781 MS.gene07716:CDS 50.0%
!! CAAGAGCATCAACCCTGATG+AGG - chr2.4:51243222-51243241 MS.gene07716:intron 50.0%
!! TTGCTGGCCTTAACGTTGTG+AGG - chr2.4:51242627-51242646 MS.gene07716:CDS 50.0%
AATGGCACCAGCATCCATGG+TGG + chr2.4:51242609-51242628 None:intergenic 55.0%
ACGTCTCGCAGCACCAAGTT+TGG + chr2.4:51243307-51243326 None:intergenic 55.0%
AGCAATGGCACCAGCATCCA+TGG + chr2.4:51242612-51242631 None:intergenic 55.0%
CGAAAAGCCACCATGGATGC+TGG - chr2.4:51242599-51242618 MS.gene07716:CDS 55.0%
CTCAACCTCCTCAAGGCTCT+TGG + chr2.4:51242914-51242933 None:intergenic 55.0%
GGAATCCAAGAGCCTTGAGG+AGG - chr2.4:51242906-51242925 MS.gene07716:intron 55.0%
GGTCTTCCAAGTGTTCCTCG+TGG - chr2.4:51243529-51243548 MS.gene07716:intron 55.0%
TATCAAAGTCCTCTCCCCCG+AGG + chr2.4:51242826-51242845 None:intergenic 55.0%
TCTGGAAACACTCACCTCGG+GGG - chr2.4:51242809-51242828 MS.gene07716:CDS 55.0%
TTCTTGTCGGGGGATCGTCT+AGG - chr2.4:51243146-51243165 MS.gene07716:intron 55.0%
! GATGCTCAAAGGTTGGTCGG+TGG - chr2.4:51241427-51241446 MS.gene07716:CDS 55.0%
!! ATGGATGCTGGTGCCATTGC+TGG - chr2.4:51242611-51242630 MS.gene07716:CDS 55.0%
!! CCTCTAGGACTACGTGTGTC+GGG - chr2.4:51241763-51241782 MS.gene07716:CDS 55.0%
AAACACTCACCTCGGGGGAG+AGG - chr2.4:51242814-51242833 MS.gene07716:CDS 60.0%
ACATCCAAGGGATGGCCACG+AGG + chr2.4:51243547-51243566 None:intergenic 60.0%
CCCGACACACGTAGTCCTAG+AGG + chr2.4:51241766-51241785 None:intergenic 60.0%
CGTGCAGTGGGAATCGACCT+TGG - chr2.4:51241298-51241317 MS.gene07716:CDS 60.0%
GGAGAAGCTCCTTTGTGCCG+AGG - chr2.4:51242466-51242485 MS.gene07716:CDS 60.0%
GGATGGCCACGAGGAACACT+TGG + chr2.4:51243538-51243557 None:intergenic 60.0%
GTGCGCGTGTGAGTGTGAGA+TGG + chr2.4:51241564-51241583 None:intergenic 60.0%
TGTTCCTCGTGGCCATCCCT+TGG - chr2.4:51243540-51243559 MS.gene07716:intron 60.0%
!! GTTGGTCGGTGGTGCTGCTA+AGG - chr2.4:51241438-51241457 MS.gene07716:CDS 60.0%
CACTCACACGCGCACCTGCA+AGG - chr2.4:51241569-51241588 MS.gene07716:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 51241277 51243978 51241277 ID=MS.gene07716
chr2.4 mRNA 51241277 51243978 51241277 ID=MS.gene07716.t1;Parent=MS.gene07716
chr2.4 exon 51243759 51243978 51243759 ID=MS.gene07716.t1.exon1;Parent=MS.gene07716.t1
chr2.4 CDS 51243759 51243978 51243759 ID=cds.MS.gene07716.t1;Parent=MS.gene07716.t1
chr2.4 exon 51241277 51242916 51241277 ID=MS.gene07716.t1.exon2;Parent=MS.gene07716.t1
chr2.4 CDS 51241277 51242916 51241277 ID=cds.MS.gene07716.t1;Parent=MS.gene07716.t1
Gene Sequence

>MS.gene07716

ATGGCAAAAAAACATGAAGGTCGTGCAGTGGGAATCGACCTTGGAACAACATATTCATGTGTTGGTGTTTGGTTGGAAGAAAAAAACAGAGTTGAGATTATCCACAACGATGAAGGCAACAAAATTACACCTTCTTTTGTTGCTTTCACTGATGCTCAAAGGTTGGTCGGTGGTGCTGCTAAGGATCAAGCTGCTATCAACGCACAAAACACCGTCTTTGGTATATTTCTATTCTCCAATCTTTTAATATTTACTCATATTGTAGCTTAGGTTTTTAATAAACACCATCTCACACTCACACGCGCACCTGCAAGGTCCTAGATTCAAACATGGGTGAAGTGTCCAATTTAACAATTTAAAAATTATTTGAGTTAGGTCTTACAAACGCTTTGTGATTCTTTATTTTCAAATGTGGCATTAAATAAAGTTTTGTTGTGACAGTGGTGTCATAAAAAACCCAATGTCGTAACCTATGAAGCATAGACACCTCTAGGACTACGTGTGTCGGGTGTACGACACTCCTATGACATTCGCATGACACGTGTTTGACAACTCAGACAAGTGTCCCAAAGAAATTGTTTTTCTTTACTTCGACACTTCTTGGACCGGTGTCTGATTGTATAACACATAAGAGGCGAGTTGGACAATTAAGACAAATGTCTGGATTTTTTTCTCTCTACTTCCACATATCGTAGTTTCAAAAGTTAAAGATGTGTCAAGAAACGTTGATCAACGAGGGTTATAGACATTAAAGTTGATCATAATAGATGGATAAATAAATAAAGGTCAAATACTATCTATCTTGTTTTAGAAATTTTTTTAATAAAATAAATTGCTCAAGTTAGAAGCACATGTATGTATTCTGATTCTTTATTTAGATATTTTATACATGAATTAATATATATGTAGCGGTGTTCGTGTCAAGTGTTTGCGTTGGAGTCCATGCTTCATAGGTCGTAAGTTAGATTATGGTCACATACATTTATTTATATCTATGATTATGACCATGTTAAAGAAACAGGTGAATGATGAGAATTTATTATCAATATTTTTTTTCTTCAGATGCTAAGAGGTTAATTGGTAGGAAATTTAGTGACCCCGTTGTTCAAAAAGATATATTGTTGTGGCCGTTCAAGGTTATTGCTGGTGTTAATGACAAACCTACGATTAGTGTTAAGTACAAGGGTGAGGAGAAGCTCCTTTGTGCCGAGGAAATCTCATCCATTGTCCTCACAAACATGAAGGAGATTGCAGAGGCTTATTTGGAATCACCGGTTAAAAATGCAGTTGTCACTGTTCCTGCTTATTTTAACGATTCTCAGCGAAAAGCCACCATGGATGCTGGTGCCATTGCTGGCCTTAACGTTGTGAGGATAATCAATGAACCCACTGCTGCAGCTATTGCATATGGCCTTGACAAAAGAAGTAATTGTGATGGTGAAAGAAATATTTTTGTCTTTGATCTTGGTGGTGGGACTTTTGATGTGTCTCTCCTCACAATTAAAGGTGATGTCTTTGAAGTTAAAGCCACTTCTGGAAACACTCACCTCGGGGGAGAGGACTTTGATAACAGAATGCTGAACTACTTTGTGCAAGAATTTAATAGGAAGAACAAAGTGGATATCACTAGGAATCCAAGAGCCTTGAGGAGGTTGAGAACTTCTTGTGAAAAGGCGAAAAGGACACTCTCTTTCAAATTGGTCACCACTATTGAGATTGATTATTTATATGAGGACATTGACTTCTCTACATCAATCACTCGTGTCAAGTTTGAAGAAATCAACATGGACCTTTTTAATGAGTGTATGAAGATTGTTGAAAGTTGTCTTGTGGATTCAAAGATCGACAAGAGCAGTGTACATGATATTGTTCTTGTCGGGGGATCGTCTAGGATTCCAAAAGTGCAGGAACTATTGCGTAACTTCTTCAATGGGAAGGAGTTGTGCAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGGGCAGCTGTGCAAGCTGCTGTGTTGAGTGAAGACATTAAGAATGTTCCAAACTTGGTGCTGCGAGACGTTACCCCATTGTCACTTGGTATCTCGGTACATAATGATCGTATTATGAGTGTGGTGATTCCTAGGAACACTTCTGTACCTTTCAAGAAGACCAGCCAATATCTTACTTCTAAAGATAACCAATATAGTGCCTTGATTGTAGTTTGTGAGGGTGAGAGGGCAAGAGTGAGTGACAACAACATGCTTGGTTTTTTCAGTCTTTCCGGTCTTCCAAGTGTTCCTCGTGGCCATCCCTTGGATGTATGCTTTGCTATCGATGAAAACGGCATCTTAACTGTTTCTGCAGAGGAAAGATCCACTGGAAGTAAGAATGAGATCACGATAACCAATGACAAAGAAAGGTTATCCAGAGTCGAAATTGAAAAATTGATTCAAGAAGCTAAGGAGTACCATGCTGAAGATGAGAAATTCCTAAGGAAGGCCAAGGTAATGAATGCATTAGATGACTGCATTTACAAGTTAAGGAATGCTCTAAAGAATAAGGATGTCAAATTAAACCTTTCTTCTCAAAAGAATAAAAAGATCAATCGTGCAATTACTGTGGCTAAAGATTTGCTTCATAAGAATAACCAGGGGAATGAAGTAGATGTTCTTGAGGATCATCTGAAAGGGCTTGAGAGTATGTTGGAACACCTTGTAATCAAGACTGGCTAG

Protein sequence

>MS.gene07716.t1

MAKKHEGRAVGIDLGTTYSCVGVWLEEKNRVEIIHNDEGNKITPSFVAFTDAQRLVGGAAKDQAAINAQNTVFDAKRLIGRKFSDPVVQKDILLWPFKVIAGVNDKPTISVKYKGEEKLLCAEEISSIVLTNMKEIAEAYLESPVKNAVVTVPAYFNDSQRKATMDAGAIAGLNVVRIINEPTAAAIAYGLDKRSNCDGERNIFVFDLGGGTFDVSLLTIKGDVFEVKATSGNTHLGGEDFDNRMLNYFVQEFNRKNKVDITRNPRALRRLRTSCEKAKRTLSFKLVTTIEIDYLYEDIDFSTSITRVKFEEINMDLFNECMKIVESCLVDSKIDKSSVHDIVLVGGSSRIPKVQELLRNFFNGKELCKSINPDEAVAYGAAVQAAVLSEDIKNVPNLVLRDVTPLSLGISVHNDRIMSVVIPRNTSVPFKKTSQYLTSKDNQYSALIVVCEGERARVSDNNMLGFFSLSGLPSVPRGHPLDVCFAIDENGILTVSAEERSTGSKNEITITNDKERLSRVEIEKLIQEAKEYHAEDEKFLRKAKVMNALDDCIYKLRNALKNKDVKLNLSSQKNKKINRAITVAKDLLHKNNQGNEVDVLEDHLKGLESMLEHLVIKTG