Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08076.t1 | XP_003600432.1 | 95.5 | 308 | 12 | 1 | 7 | 314 | 25 | 330 | 8.10E-162 | 579.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08076.t1 | Q680K8 | 69.1 | 291 | 87 | 3 | 25 | 314 | 41 | 329 | 4.3e-111 | 402.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08076.t1 | G7IY69 | 95.5 | 308 | 12 | 1 | 7 | 314 | 25 | 330 | 5.8e-162 | 579.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08076.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene54146 | MS.gene08076 | PPI |
| MS.gene08076 | MS.gene039090 | PPI |
| MS.gene76479 | MS.gene08076 | PPI |
| MS.gene039084 | MS.gene08076 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08076.t1 | MTR_3g061090 | 95.455 | 308 | 12 | 1 | 7 | 314 | 25 | 330 | 0.0 | 597 |
| MS.gene08076.t1 | MTR_3g061090 | 100.000 | 258 | 0 | 0 | 57 | 314 | 1 | 258 | 0.0 | 530 |
| MS.gene08076.t1 | MTR_5g096700 | 63.322 | 289 | 103 | 3 | 25 | 312 | 43 | 329 | 1.37e-125 | 362 |
| MS.gene08076.t1 | MTR_5g096700 | 64.338 | 272 | 94 | 3 | 42 | 312 | 1 | 270 | 1.62e-120 | 347 |
| MS.gene08076.t1 | MTR_1g029850 | 47.249 | 309 | 157 | 3 | 7 | 312 | 23 | 328 | 5.04e-98 | 292 |
| MS.gene08076.t1 | MTR_3g088560 | 48.684 | 304 | 150 | 5 | 7 | 308 | 22 | 321 | 1.38e-95 | 286 |
| MS.gene08076.t1 | MTR_3g088560 | 51.046 | 239 | 115 | 2 | 72 | 308 | 13 | 251 | 6.59e-81 | 246 |
| MS.gene08076.t1 | MTR_3g088560 | 51.695 | 236 | 112 | 2 | 75 | 308 | 31 | 266 | 2.60e-80 | 245 |
| MS.gene08076.t1 | MTR_5g096790 | 48.929 | 280 | 123 | 6 | 34 | 308 | 58 | 322 | 1.94e-74 | 232 |
| MS.gene08076.t1 | MTR_3g088560 | 53.030 | 198 | 91 | 2 | 113 | 308 | 2 | 199 | 8.70e-66 | 206 |
| MS.gene08076.t1 | MTR_7g094490 | 27.815 | 151 | 94 | 3 | 139 | 276 | 197 | 345 | 1.41e-11 | 65.1 |
| MS.gene08076.t1 | MTR_3g072160 | 30.108 | 186 | 122 | 4 | 118 | 295 | 66 | 251 | 1.44e-11 | 64.3 |
| MS.gene08076.t1 | MTR_1g072650 | 28.289 | 152 | 94 | 3 | 139 | 277 | 201 | 350 | 1.49e-11 | 65.1 |
| MS.gene08076.t1 | MTR_3g072160 | 32.143 | 168 | 106 | 4 | 118 | 277 | 29 | 196 | 1.69e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08076.t1 | AT1G55760 | 67.427 | 307 | 94 | 5 | 9 | 314 | 28 | 329 | 2.11e-147 | 417 |
| MS.gene08076.t1 | AT1G21780 | 48.366 | 306 | 154 | 3 | 7 | 312 | 23 | 324 | 1.99e-101 | 301 |
| MS.gene08076.t1 | AT1G21780 | 48.366 | 306 | 154 | 3 | 7 | 312 | 23 | 324 | 1.99e-101 | 301 |
| MS.gene08076.t1 | AT1G01640 | 30.366 | 191 | 128 | 4 | 126 | 313 | 1 | 189 | 8.08e-16 | 75.1 |
| MS.gene08076.t1 | AT1G01640 | 30.588 | 170 | 113 | 4 | 147 | 313 | 1 | 168 | 2.80e-13 | 67.8 |
| MS.gene08076.t1 | AT3G03740 | 31.959 | 194 | 114 | 5 | 133 | 310 | 199 | 390 | 8.64e-13 | 68.9 |
| MS.gene08076.t1 | AT3G56230 | 30.247 | 162 | 109 | 3 | 136 | 293 | 98 | 259 | 2.46e-12 | 66.6 |
| MS.gene08076.t1 | AT2G40450 | 32.540 | 126 | 74 | 4 | 130 | 244 | 4 | 129 | 8.92e-12 | 63.9 |
| MS.gene08076.t1 | AT2G39760 | 27.703 | 148 | 96 | 1 | 139 | 275 | 184 | 331 | 7.41e-11 | 62.8 |
| MS.gene08076.t1 | AT2G39760 | 27.703 | 148 | 96 | 1 | 139 | 275 | 184 | 331 | 7.86e-11 | 62.8 |
| MS.gene08076.t1 | AT2G39760 | 27.703 | 148 | 96 | 1 | 139 | 275 | 184 | 331 | 7.86e-11 | 62.8 |
Find 62 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTGAGGTTCCACTTTC+TGG | 0.064092 | 3.3:-49303444 | MS.gene08076:CDS |
| CTTGTAACATTGGATATTTC+AGG | 0.153912 | 3.3:+49303936 | None:intergenic |
| ATCCAGTATCTTGTTAAATT+TGG | 0.170654 | 3.3:-49302153 | MS.gene08076:CDS |
| CGACATGTCTGTGATGTTTA+TGG | 0.202175 | 3.3:+49302401 | None:intergenic |
| TTGGTAAAATATTTGAAATT+CGG | 0.228336 | 3.3:-49302134 | MS.gene08076:CDS |
| TGAGATCCCTGTCTGCATTT+TGG | 0.235168 | 3.3:+49302091 | None:intergenic |
| TGGTAAAATATTTGAAATTC+GGG | 0.243014 | 3.3:-49302133 | MS.gene08076:CDS |
| GATCTCATTGCTGAAGTCTT+TGG | 0.244175 | 3.3:-49302075 | MS.gene08076:CDS |
| ATCTCATTGCTGAAGTCTTT+GGG | 0.251994 | 3.3:-49302074 | MS.gene08076:CDS |
| GAAGTCTTTGGGGAAGTTCT+TGG | 0.299443 | 3.3:-49302063 | MS.gene08076:CDS |
| TTCCTTGATTTGAAGATTGC+AGG | 0.320978 | 3.3:-49303399 | MS.gene08076:CDS |
| TACCAAATTTAACAAGATAC+TGG | 0.332501 | 3.3:+49302151 | None:intergenic |
| AGATCTTCAATATCCTTTCC+AGG | 0.343648 | 3.3:+49302038 | None:intergenic |
| TTGGGGAAGTTCTTGGTGCC+TGG | 0.360323 | 3.3:-49302056 | MS.gene08076:CDS |
| TTCAAAATGCATCACTATAT+CGG | 0.365062 | 3.3:-49302200 | MS.gene08076:CDS |
| GATCGTGTGAAAACATGCTT+TGG | 0.410502 | 3.3:+49302445 | None:intergenic |
| AAATCCTTCACCACCCCATA+TGG | 0.411517 | 3.3:+49302611 | None:intergenic |
| GTGGAGAACCTTGCTCCATA+TGG | 0.412309 | 3.3:-49302626 | MS.gene08076:CDS |
| AGTCAACAACCTGGGAAAGC+CGG | 0.460730 | 3.3:-49304641 | MS.gene08076:CDS |
| AGGATTATCTCTTGTAACAT+TGG | 0.466890 | 3.3:+49303926 | None:intergenic |
| TGGAGAACCTTGCTCCATAT+GGG | 0.474713 | 3.3:-49302625 | MS.gene08076:CDS |
| GCAAAAGCCCTAGGGTCTCT+TGG | 0.476148 | 3.3:-49302570 | MS.gene08076:CDS |
| CGAAAAGCTCTCACACATCC+AGG | 0.477842 | 3.3:-49303855 | MS.gene08076:intron |
| GTCAACAACCTGGGAAAGCC+GGG | 0.479947 | 3.3:-49304640 | MS.gene08076:CDS |
| CATGTCGATTGAAGTATGTC+AGG | 0.482314 | 3.3:-49302385 | MS.gene08076:CDS |
| AAAACTCTCCCGGCTTTCCC+AGG | 0.488012 | 3.3:+49304632 | None:intergenic |
| GCTTTGGAAGACAGGTGAAC+GGG | 0.489275 | 3.3:+49302461 | None:intergenic |
| TGCTCCATATGGGGTGGTGA+AGG | 0.497886 | 3.3:-49302615 | MS.gene08076:CDS |
| GGCCTGCAATCTTCAAATCA+AGG | 0.500364 | 3.3:+49303397 | None:intergenic |
| AATGCTTCGGATGGAAGTAT+AGG | 0.510954 | 3.3:-49302507 | MS.gene08076:CDS |
| AGACATCACAATCAATGCTT+CGG | 0.520138 | 3.3:-49302520 | MS.gene08076:CDS |
| TGTTCCTCCAAAATGCAGAC+AGG | 0.530833 | 3.3:-49302098 | MS.gene08076:CDS |
| GCATTCTACCAAGAGACCCT+AGG | 0.531172 | 3.3:+49302562 | None:intergenic |
| AGATCGAACGCAAAAGCCCT+AGG | 0.533227 | 3.3:-49302579 | MS.gene08076:CDS |
| GAAGTTCTTGGTGCCTGGAA+AGG | 0.537759 | 3.3:-49302051 | MS.gene08076:CDS |
| GAAAACATGCTTTGGAAGAC+AGG | 0.538730 | 3.3:+49302453 | None:intergenic |
| CGCATGATAAACGAAGCAAT+TGG | 0.543907 | 3.3:+49303903 | None:intergenic |
| CGTGTCGTTAGTTCTGCTCA+TGG | 0.548473 | 3.3:-49303882 | MS.gene08076:CDS |
| ATGAAGAATTTCTGACACAT+AGG | 0.551928 | 3.3:-49302329 | MS.gene08076:CDS |
| ATCACAATCAATGCTTCGGA+TGG | 0.568005 | 3.3:-49302516 | MS.gene08076:CDS |
| ATGAAGAGAAACGAGGATTG+TGG | 0.569942 | 3.3:-49304671 | MS.gene08076:CDS |
| CATTCTACCAAGAGACCCTA+GGG | 0.576970 | 3.3:+49302563 | None:intergenic |
| GGAGAACCTTGCTCCATATG+GGG | 0.579524 | 3.3:-49302624 | MS.gene08076:CDS |
| TATCTTCTAGAAGACTCTCA+TGG | 0.579860 | 3.3:+49302250 | None:intergenic |
| ATGATAAACGAAGCAATTGG+AGG | 0.581597 | 3.3:+49303906 | None:intergenic |
| TTCTAGAAGACTCTCATGGA+TGG | 0.591651 | 3.3:+49302254 | None:intergenic |
| TCTCATTGCTGAAGTCTTTG+GGG | 0.597947 | 3.3:-49302073 | MS.gene08076:CDS |
| GGGTGGTGAAGGATTTACTC+AGG | 0.609959 | 3.3:-49302604 | MS.gene08076:CDS |
| TGTGAAATGAAGGTATTTGT+CGG | 0.609961 | 3.3:-49303994 | MS.gene08076:intron |
| GGAAGAAAGAGTCAACAACC+TGG | 0.613447 | 3.3:-49304650 | MS.gene08076:CDS |
| CTTGGTAGAATGCTAAGAGA+AGG | 0.615271 | 3.3:-49302552 | MS.gene08076:CDS |
| TGCTTTGGAAGACAGGTGAA+CGG | 0.624572 | 3.3:+49302460 | None:intergenic |
| GTTCCTCCAAAATGCAGACA+GGG | 0.639389 | 3.3:-49302097 | MS.gene08076:CDS |
| TCACCACCCCATATGGAGCA+AGG | 0.646739 | 3.3:+49302618 | None:intergenic |
| GAAGAAAGAGTCAACAACCT+GGG | 0.649051 | 3.3:-49304649 | MS.gene08076:CDS |
| GATCGAACGCAAAAGCCCTA+GGG | 0.649072 | 3.3:-49302578 | MS.gene08076:CDS |
| CGACATATCTGACTTGAGAG+AGG | 0.668882 | 3.3:-49302277 | MS.gene08076:CDS |
| GAAATGAAGGTATTTGTCGG+TGG | 0.696589 | 3.3:-49303991 | MS.gene08076:intron |
| GCTAGCGCTTCTGCATGCAG+CGG | 0.709404 | 3.3:-49302307 | MS.gene08076:CDS |
| TTTGTCGGTGGAGAAACACA+AGG | 0.725214 | 3.3:-49303979 | MS.gene08076:CDS |
| GAACCTTGCTCCATATGGGG+TGG | 0.727934 | 3.3:-49302621 | MS.gene08076:CDS |
| GATTCATATGAAGAGAAACG+AGG | 0.748404 | 3.3:-49304678 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTATTTATTTTCTG+TGG | - | chr3.3:49303368-49303387 | MS.gene08076:intron | 10.0% |
| !!! | AATTTTCGATACATTATTAT+AGG | - | chr3.3:49304066-49304085 | MS.gene08076:intron | 15.0% |
| !!! | ATATATATCATTTTTAATGC+AGG | - | chr3.3:49302412-49302431 | MS.gene08076:CDS | 15.0% |
| !!! | ATTTTCGATACATTATTATA+GGG | - | chr3.3:49304067-49304086 | MS.gene08076:intron | 15.0% |
| !!! | TTGGTAAAATATTTGAAATT+CGG | - | chr3.3:49304581-49304600 | MS.gene08076:intron | 15.0% |
| !! | AAATGCTCATGATTATAAAA+GGG | + | chr3.3:49303486-49303505 | None:intergenic | 20.0% |
| !! | TAAATGCTCATGATTATAAA+AGG | + | chr3.3:49303487-49303506 | None:intergenic | 20.0% |
| !!! | AATGGATTATATAATCAAAC+AGG | - | chr3.3:49303558-49303577 | MS.gene08076:intron | 20.0% |
| !!! | ATGGATTATATAATCAAACA+GGG | - | chr3.3:49303559-49303578 | MS.gene08076:intron | 20.0% |
| !!! | ATTATAGCATTGATAATTGT+TGG | + | chr3.3:49303880-49303899 | None:intergenic | 20.0% |
| !!! | ATTGTTGATAAAGTTTGTTT+GGG | - | chr3.3:49303693-49303712 | MS.gene08076:intron | 20.0% |
| !!! | GTTTAGCTAAAATCAATTTT+GGG | - | chr3.3:49303438-49303457 | MS.gene08076:CDS | 20.0% |
| !!! | GTTTTGAATATTATAGAGTT+TGG | - | chr3.3:49302621-49302640 | MS.gene08076:CDS | 20.0% |
| !!! | TGGTAAAATATTTGAAATTC+GGG | - | chr3.3:49304582-49304601 | MS.gene08076:intron | 20.0% |
| !!! | TGTTATTTCAATTTTTCTTG+TGG | - | chr3.3:49302911-49302930 | MS.gene08076:intron | 20.0% |
| !!! | TTTAGCTAAAATCAATTTTG+GGG | - | chr3.3:49303439-49303458 | MS.gene08076:CDS | 20.0% |
| ! | AAACATGTGCTAAAAAAAAG+TGG | - | chr3.3:49302526-49302545 | MS.gene08076:CDS | 25.0% |
| ! | AACATGTGCTAAAAAAAAGT+GGG | - | chr3.3:49302527-49302546 | MS.gene08076:CDS | 25.0% |
| ! | AATGCTCATGATTATAAAAG+GGG | + | chr3.3:49303485-49303504 | None:intergenic | 25.0% |
| ! | ATCAGAATGATTAGTGATAA+TGG | - | chr3.3:49303540-49303559 | MS.gene08076:intron | 25.0% |
| ! | ATCCAGTATCTTGTTAAATT+TGG | - | chr3.3:49304562-49304581 | MS.gene08076:intron | 25.0% |
| ! | GAAAATTAGCATTTCAAACA+AGG | + | chr3.3:49304053-49304072 | None:intergenic | 25.0% |
| ! | GAAATTAATCAACAGAAGAA+TGG | + | chr3.3:49303188-49303207 | None:intergenic | 25.0% |
| ! | TAATCATTCTGATTCATCAT+TGG | + | chr3.3:49303533-49303552 | None:intergenic | 25.0% |
| ! | TACCAAATTTAACAAGATAC+TGG | + | chr3.3:49304567-49304586 | None:intergenic | 25.0% |
| ! | TGCAAATGTTAATCATTTAG+AGG | - | chr3.3:49303398-49303417 | MS.gene08076:CDS | 25.0% |
| ! | TGGATTATATAATCAAACAG+GGG | - | chr3.3:49303560-49303579 | MS.gene08076:intron | 25.0% |
| ! | TTAATCATTTAGAGGCAATT+GGG | - | chr3.3:49303406-49303425 | MS.gene08076:CDS | 25.0% |
| ! | TTCAAAATGCATCACTATAT+CGG | - | chr3.3:49304515-49304534 | MS.gene08076:intron | 25.0% |
| ! | TTTAGCACATGTTTAGATTA+CGG | + | chr3.3:49302520-49302539 | None:intergenic | 25.0% |
| !! | AGACAATTCAGATTTTAAAC+TGG | - | chr3.3:49303794-49303813 | MS.gene08076:intron | 25.0% |
| !! | ATTTTTAATGTCCTAATGCA+TGG | - | chr3.3:49303041-49303060 | MS.gene08076:intron | 25.0% |
| !! | CATTGTTGATAAAGTTTGTT+TGG | - | chr3.3:49303692-49303711 | MS.gene08076:intron | 25.0% |
| !! | CTTTTCTCAATTATCTTTAC+GGG | - | chr3.3:49304353-49304372 | MS.gene08076:intron | 25.0% |
| !! | GCTTTTCTCAATTATCTTTA+CGG | - | chr3.3:49304352-49304371 | MS.gene08076:intron | 25.0% |
| !! | GGTTTAGCTAAAATCAATTT+TGG | - | chr3.3:49303437-49303456 | MS.gene08076:CDS | 25.0% |
| !! | TCATTGGTGATTATTAACAA+AGG | + | chr3.3:49303517-49303536 | None:intergenic | 25.0% |
| !!! | AAATCAGAATTTTGATTACC+TGG | + | chr3.3:49302881-49302900 | None:intergenic | 25.0% |
| !!! | ATCAATTTTGGGGTAATAAT+TGG | - | chr3.3:49303449-49303468 | MS.gene08076:CDS | 25.0% |
| !!! | GGATTTTAATTTTCTGTAGT+CGG | - | chr3.3:49303728-49303747 | MS.gene08076:intron | 25.0% |
| AAATCTGATCCTTTCAAGAT+TGG | - | chr3.3:49302252-49302271 | MS.gene08076:CDS | 30.0% | |
| ACATGTGCTAAAAAAAAGTG+GGG | - | chr3.3:49302528-49302547 | MS.gene08076:CDS | 30.0% | |
| AGAGAATCAGTCATTCTATT+TGG | + | chr3.3:49302162-49302181 | None:intergenic | 30.0% | |
| AGATTTAACTAGTTAACCCT+TGG | + | chr3.3:49303637-49303656 | None:intergenic | 30.0% | |
| AGGATTATCTCTTGTAACAT+TGG | + | chr3.3:49302792-49302811 | None:intergenic | 30.0% | |
| AGTCTTAAGCATATACATCT+GGG | + | chr3.3:49303342-49303361 | None:intergenic | 30.0% | |
| ATAATGATTCCCTCAAATCT+TGG | + | chr3.3:49303963-49303982 | None:intergenic | 30.0% | |
| ATACGAAAAATGTACTTGAG+AGG | - | chr3.3:49304491-49304510 | MS.gene08076:intron | 30.0% | |
| ATCAGTCATTCTATTTGGAA+AGG | + | chr3.3:49302157-49302176 | None:intergenic | 30.0% | |
| ATGAAGAATTTCTGACACAT+AGG | - | chr3.3:49304386-49304405 | MS.gene08076:intron | 30.0% | |
| ATTATATAATCAAACAGGGG+AGG | - | chr3.3:49303563-49303582 | MS.gene08076:intron | 30.0% | |
| CAAAATCCAGTTCATTTCTA+CGG | - | chr3.3:49303934-49303953 | MS.gene08076:CDS | 30.0% | |
| CTTGTAACATTGGATATTTC+AGG | + | chr3.3:49302782-49302801 | None:intergenic | 30.0% | |
| GATCACAAAACATATGTACT+AGG | + | chr3.3:49302445-49302464 | None:intergenic | 30.0% | |
| GTTAATCATTTAGAGGCAAT+TGG | - | chr3.3:49303405-49303424 | MS.gene08076:CDS | 30.0% | |
| TCAAATCCAATTCCTCATAA+GGG | + | chr3.3:49302659-49302678 | None:intergenic | 30.0% | |
| TGTATTTGTGTGTGAAATGA+AGG | - | chr3.3:49302711-49302730 | MS.gene08076:intron | 30.0% | |
| TTCGATACATTATTATAGGG+TGG | - | chr3.3:49304070-49304089 | MS.gene08076:intron | 30.0% | |
| ! | AGAGCAATGAAGATTTTGTT+TGG | - | chr3.3:49303248-49303267 | MS.gene08076:intron | 30.0% |
| ! | ATGATGAATTTTCCAGAAAG+TGG | + | chr3.3:49303286-49303305 | None:intergenic | 30.0% |
| ! | GAGTTTAATTTCCATGCATT+AGG | + | chr3.3:49303055-49303074 | None:intergenic | 30.0% |
| ! | GTACATATGTTTTGTGATCA+CGG | - | chr3.3:49302446-49302465 | MS.gene08076:CDS | 30.0% |
| ! | TAGTCTTAAGCATATACATC+TGG | + | chr3.3:49303343-49303362 | None:intergenic | 30.0% |
| !! | AGATTTTGTTTGGTCAATTG+AGG | - | chr3.3:49303258-49303277 | MS.gene08076:intron | 30.0% |
| !! | GTTTTTGTTGGAAGGTATAT+TGG | - | chr3.3:49302101-49302120 | MS.gene08076:CDS | 30.0% |
| !! | TGTGAAATGAAGGTATTTGT+CGG | - | chr3.3:49302721-49302740 | MS.gene08076:intron | 30.0% |
| AAAAAAAAGTGGGGTTGTGT+TGG | - | chr3.3:49302537-49302556 | MS.gene08076:CDS | 35.0% | |
| AAAGTGCAACTGTGATTTCA+TGG | + | chr3.3:49302134-49302153 | None:intergenic | 35.0% | |
| AGACATCACAATCAATGCTT+CGG | - | chr3.3:49304195-49304214 | MS.gene08076:intron | 35.0% | |
| ATCCTTTCAAGATTGGTATC+TGG | - | chr3.3:49302259-49302278 | MS.gene08076:CDS | 35.0% | |
| ATCTCATTGCTGAAGTCTTT+GGG | - | chr3.3:49304641-49304660 | MS.gene08076:CDS | 35.0% | |
| ATGATAAACGAAGCAATTGG+AGG | + | chr3.3:49302812-49302831 | None:intergenic | 35.0% | |
| CTCAAATCCAATTCCTCATA+AGG | + | chr3.3:49302660-49302679 | None:intergenic | 35.0% | |
| TCAAATCTATTTAGCCACGT+GGG | + | chr3.3:49302587-49302606 | None:intergenic | 35.0% | |
| TCAAATTAGAGTCATCACTG+TGG | + | chr3.3:49303664-49303683 | None:intergenic | 35.0% | |
| TCAATGGAGAATCGATAACT+TGG | - | chr3.3:49302212-49302231 | MS.gene08076:CDS | 35.0% | |
| TTCAAATCTATTTAGCCACG+TGG | + | chr3.3:49302588-49302607 | None:intergenic | 35.0% | |
| TTCCAGATACCAATCTTGAA+AGG | + | chr3.3:49302264-49302283 | None:intergenic | 35.0% | |
| ! | AAATCAGCATGTTTTCTGCA+CGG | - | chr3.3:49303842-49303861 | MS.gene08076:intron | 35.0% |
| ! | CGTAGAAATGAACTGGATTT+TGG | + | chr3.3:49303936-49303955 | None:intergenic | 35.0% |
| ! | TATCTTCTAGAAGACTCTCA+TGG | + | chr3.3:49304468-49304487 | None:intergenic | 35.0% |
| ! | TCAAGATTGGTATCTGGAAT+TGG | - | chr3.3:49302265-49302284 | MS.gene08076:CDS | 35.0% |
| ! | TTCCTTGATTTGAAGATTGC+AGG | - | chr3.3:49303316-49303335 | MS.gene08076:intron | 35.0% |
| !!! | TTTTTTGCAAGACCCTTATG+AGG | - | chr3.3:49302644-49302663 | MS.gene08076:intron | 35.0% |
| AAAATTGACCCTCAAGCCAA+GGG | - | chr3.3:49303618-49303637 | MS.gene08076:intron | 40.0% | |
| ATCACAATCAATGCTTCGGA+TGG | - | chr3.3:49304199-49304218 | MS.gene08076:intron | 40.0% | |
| ATGAAGAGAAACGAGGATTG+TGG | - | chr3.3:49302044-49302063 | MS.gene08076:CDS | 40.0% | |
| CGACATGTCTGTGATGTTTA+TGG | + | chr3.3:49304317-49304336 | None:intergenic | 40.0% | |
| CGCATGATAAACGAAGCAAT+TGG | + | chr3.3:49302815-49302834 | None:intergenic | 40.0% | |
| CGGTGAATTTGTCAGAATCA+CGG | + | chr3.3:49302500-49302519 | None:intergenic | 40.0% | |
| CTTGGTAGAATGCTAAGAGA+AGG | - | chr3.3:49304163-49304182 | MS.gene08076:intron | 40.0% | |
| GAAGAAAGAGTCAACAACCT+GGG | - | chr3.3:49302066-49302085 | MS.gene08076:CDS | 40.0% | |
| GATCGTGTGAAAACATGCTT+TGG | + | chr3.3:49304273-49304292 | None:intergenic | 40.0% | |
| GATCTCATTGCTGAAGTCTT+TGG | - | chr3.3:49304640-49304659 | MS.gene08076:CDS | 40.0% | |
| TAAAATTGACCCTCAAGCCA+AGG | - | chr3.3:49303617-49303636 | MS.gene08076:intron | 40.0% | |
| TCAATTGAGGTTCCACTTTC+TGG | - | chr3.3:49303271-49303290 | MS.gene08076:intron | 40.0% | |
| TCTCATTGCTGAAGTCTTTG+GGG | - | chr3.3:49304642-49304661 | MS.gene08076:CDS | 40.0% | |
| ! | AATGCTTCGGATGGAAGTAT+AGG | - | chr3.3:49304208-49304227 | MS.gene08076:intron | 40.0% |
| ! | CATGTCGATTGAAGTATGTC+AGG | - | chr3.3:49304330-49304349 | MS.gene08076:intron | 40.0% |
| ! | TTCTAGAAGACTCTCATGGA+TGG | + | chr3.3:49304464-49304483 | None:intergenic | 40.0% |
| !! | GAAAACATGCTTTGGAAGAC+AGG | + | chr3.3:49304265-49304284 | None:intergenic | 40.0% |
| !! | GAAATGAAGGTATTTGTCGG+TGG | - | chr3.3:49302724-49302743 | MS.gene08076:intron | 40.0% |
| AAAAATTGAGACAGCCCACG+TGG | - | chr3.3:49302570-49302589 | MS.gene08076:CDS | 45.0% | |
| AAATCCTTCACCACCCCATA+TGG | + | chr3.3:49304107-49304126 | None:intergenic | 45.0% | |
| AGAGGCAATTGGGAATGTGT+CGG | - | chr3.3:49303416-49303435 | MS.gene08076:CDS | 45.0% | |
| AGTCGGAATCCTGTGTATTC+AGG | - | chr3.3:49303745-49303764 | MS.gene08076:intron | 45.0% | |
| ATTCTCCATTGAGCAAGACG+TGG | + | chr3.3:49302204-49302223 | None:intergenic | 45.0% | |
| CATTCTACCAAGAGACCCTA+GGG | + | chr3.3:49304155-49304174 | None:intergenic | 45.0% | |
| CCTTCCAACAAAAACTCTCC+CGG | + | chr3.3:49302096-49302115 | None:intergenic | 45.0% | |
| CTACGGTGACCAAGATTTGA+GGG | - | chr3.3:49303951-49303970 | MS.gene08076:CDS | 45.0% | |
| GATCTTGATCCAACATCCAC+TGG | + | chr3.3:49303774-49303793 | None:intergenic | 45.0% | |
| GCAAGACCCTTATGAGGAAT+TGG | - | chr3.3:49302650-49302669 | MS.gene08076:intron | 45.0% | |
| GGAAGAAAGAGTCAACAACC+TGG | - | chr3.3:49302065-49302084 | MS.gene08076:CDS | 45.0% | |
| GGCCTGCAATCTTCAAATCA+AGG | + | chr3.3:49303321-49303340 | None:intergenic | 45.0% | |
| GTTCCTCCAAAATGCAGACA+GGG | - | chr3.3:49304618-49304637 | MS.gene08076:intron | 45.0% | |
| TCTACGGTGACCAAGATTTG+AGG | - | chr3.3:49303950-49303969 | MS.gene08076:CDS | 45.0% | |
| TGGAGAACCTTGCTCCATAT+GGG | - | chr3.3:49304090-49304109 | MS.gene08076:intron | 45.0% | |
| TGGTCACCGTAGAAATGAAC+TGG | + | chr3.3:49303943-49303962 | None:intergenic | 45.0% | |
| TGTTCCTCCAAAATGCAGAC+AGG | - | chr3.3:49304617-49304636 | MS.gene08076:intron | 45.0% | |
| TTGTTTGGGCAGCAGTTCAT+TGG | - | chr3.3:49303707-49303726 | MS.gene08076:intron | 45.0% | |
| TTTGTCGGTGGAGAAACACA+AGG | - | chr3.3:49302736-49302755 | MS.gene08076:intron | 45.0% | |
| ! | AAAGCCGGGAGAGTTTTTGT+TGG | - | chr3.3:49302089-49302108 | MS.gene08076:CDS | 45.0% |
| ! | ACTAGTTAACCCTTGGCTTG+AGG | + | chr3.3:49303630-49303649 | None:intergenic | 45.0% |
| ! | CGACATATCTGACTTGAGAG+AGG | - | chr3.3:49304438-49304457 | MS.gene08076:intron | 45.0% |
| ! | CTAGTTAACCCTTGGCTTGA+GGG | + | chr3.3:49303629-49303648 | None:intergenic | 45.0% |
| ! | GAAGTCTTTGGGGAAGTTCT+TGG | - | chr3.3:49304652-49304671 | MS.gene08076:CDS | 45.0% |
| ! | TGAGATCCCTGTCTGCATTT+TGG | + | chr3.3:49304627-49304646 | None:intergenic | 45.0% |
| !! | TGCTTTGGAAGACAGGTGAA+CGG | + | chr3.3:49304258-49304277 | None:intergenic | 45.0% |
| AGATCGAACGCAAAAGCCCT+AGG | - | chr3.3:49304136-49304155 | MS.gene08076:intron | 50.0% | |
| AGTCAACAACCTGGGAAAGC+CGG | - | chr3.3:49302074-49302093 | MS.gene08076:CDS | 50.0% | |
| CAACTCCACGTCTTGCTCAA+TGG | - | chr3.3:49302196-49302215 | MS.gene08076:CDS | 50.0% | |
| CACTGGTGTCCTGAATACAC+AGG | + | chr3.3:49303757-49303776 | None:intergenic | 50.0% | |
| CGAAAAGCTCTCACACATCC+AGG | - | chr3.3:49302860-49302879 | MS.gene08076:intron | 50.0% | |
| CTGTGTATTCAGGACACCAG+TGG | - | chr3.3:49303755-49303774 | MS.gene08076:intron | 50.0% | |
| GATCGAACGCAAAAGCCCTA+GGG | - | chr3.3:49304137-49304156 | MS.gene08076:intron | 50.0% | |
| GCATTCTACCAAGAGACCCT+AGG | + | chr3.3:49304156-49304175 | None:intergenic | 50.0% | |
| GGAGAACCTTGCTCCATATG+GGG | - | chr3.3:49304091-49304110 | MS.gene08076:intron | 50.0% | |
| GGGTGGTGAAGGATTTACTC+AGG | - | chr3.3:49304111-49304130 | MS.gene08076:intron | 50.0% | |
| GTGGAGAACCTTGCTCCATA+TGG | - | chr3.3:49304089-49304108 | MS.gene08076:intron | 50.0% | |
| TTCAGGACACCAGTGGATGT+TGG | - | chr3.3:49303762-49303781 | MS.gene08076:intron | 50.0% | |
| ! | CCGGGAGAGTTTTTGTTGGA+AGG | - | chr3.3:49302093-49302112 | MS.gene08076:CDS | 50.0% |
| ! | GATCCCTGTCTGCATTTTGG+AGG | + | chr3.3:49304624-49304643 | None:intergenic | 50.0% |
| !! | CGTGTCGTTAGTTCTGCTCA+TGG | - | chr3.3:49302833-49302852 | MS.gene08076:intron | 50.0% |
| !! | GAAGTTCTTGGTGCCTGGAA+AGG | - | chr3.3:49304664-49304683 | MS.gene08076:CDS | 50.0% |
| !! | GCTTTGGAAGACAGGTGAAC+GGG | + | chr3.3:49304257-49304276 | None:intergenic | 50.0% |
| AAAACTCTCCCGGCTTTCCC+AGG | + | chr3.3:49302086-49302105 | None:intergenic | 55.0% | |
| GAACCTTGCTCCATATGGGG+TGG | - | chr3.3:49304094-49304113 | MS.gene08076:intron | 55.0% | |
| GCAAAAGCCCTAGGGTCTCT+TGG | - | chr3.3:49304145-49304164 | MS.gene08076:intron | 55.0% | |
| GTCAACAACCTGGGAAAGCC+GGG | - | chr3.3:49302075-49302094 | MS.gene08076:CDS | 55.0% | |
| TCACCACCCCATATGGAGCA+AGG | + | chr3.3:49304100-49304119 | None:intergenic | 55.0% | |
| TGCTCCATATGGGGTGGTGA+AGG | - | chr3.3:49304100-49304119 | MS.gene08076:intron | 55.0% | |
| !! | TTGGGGAAGTTCTTGGTGCC+TGG | - | chr3.3:49304659-49304678 | MS.gene08076:CDS | 55.0% |
| GCTAGCGCTTCTGCATGCAG+CGG | - | chr3.3:49304408-49304427 | MS.gene08076:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 49302044 | 49304693 | 49302044 | ID=MS.gene08076 |
| chr3.3 | mRNA | 49302044 | 49304693 | 49302044 | ID=MS.gene08076.t1;Parent=MS.gene08076 |
| chr3.3 | exon | 49304623 | 49304693 | 49304623 | ID=MS.gene08076.t1.exon1;Parent=MS.gene08076.t1 |
| chr3.3 | CDS | 49304623 | 49304693 | 49304623 | ID=cds.MS.gene08076.t1;Parent=MS.gene08076.t1 |
| chr3.3 | exon | 49303856 | 49304004 | 49303856 | ID=MS.gene08076.t1.exon2;Parent=MS.gene08076.t1 |
| chr3.3 | CDS | 49303856 | 49304004 | 49303856 | ID=cds.MS.gene08076.t1;Parent=MS.gene08076.t1 |
| chr3.3 | exon | 49303392 | 49303510 | 49303392 | ID=MS.gene08076.t1.exon3;Parent=MS.gene08076.t1 |
| chr3.3 | CDS | 49303392 | 49303510 | 49303392 | ID=cds.MS.gene08076.t1;Parent=MS.gene08076.t1 |
| chr3.3 | exon | 49302044 | 49302649 | 49302044 | ID=MS.gene08076.t1.exon4;Parent=MS.gene08076.t1 |
| chr3.3 | CDS | 49302044 | 49302649 | 49302044 | ID=cds.MS.gene08076.t1;Parent=MS.gene08076.t1 |
| Gene Sequence |
| Protein sequence |
