Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08258.t1 | XP_013446527.1 | 97.4 | 857 | 21 | 1 | 57 | 913 | 57 | 912 | 0.00E+00 | 1551.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08258.t1 | Q0WVW7 | 55.5 | 839 | 331 | 9 | 95 | 913 | 90 | 906 | 3.5e-246 | 852.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08258.t1 | A0A072TSR0 | 97.4 | 857 | 21 | 1 | 57 | 913 | 57 | 912 | 0.0e+00 | 1551.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene08258 | 0.804345 | 2.26E-49 | -1.69E-46 |
| MS.gene049989 | MS.gene08258 | 0.830572 | 2.72E-55 | -1.69E-46 |
| MS.gene050297 | MS.gene08258 | 0.806497 | 7.99E-50 | -1.69E-46 |
| MS.gene056041 | MS.gene08258 | 0.801397 | 9.18E-49 | -1.69E-46 |
| MS.gene058196 | MS.gene08258 | 0.805758 | 1.14E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene08258 | 0.821205 | 4.57E-53 | -1.69E-46 |
| MS.gene060565 | MS.gene08258 | 0.807508 | 4.88E-50 | -1.69E-46 |
| MS.gene061260 | MS.gene08258 | 0.829464 | 5.07E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08258.t1 | MTR_8g080160 | 96.714 | 913 | 29 | 1 | 1 | 913 | 1 | 912 | 0.0 | 1818 |
| MS.gene08258.t1 | MTR_2g042440 | 39.835 | 364 | 195 | 9 | 260 | 607 | 25 | 380 | 8.61e-62 | 223 |
| MS.gene08258.t1 | MTR_2g042440 | 39.835 | 364 | 195 | 9 | 260 | 607 | 25 | 380 | 9.18e-62 | 223 |
| MS.gene08258.t1 | MTR_2g006440 | 36.620 | 355 | 213 | 6 | 270 | 616 | 401 | 751 | 2.30e-60 | 224 |
| MS.gene08258.t1 | MTR_1g083840 | 37.322 | 351 | 202 | 9 | 271 | 609 | 195 | 539 | 7.48e-60 | 215 |
| MS.gene08258.t1 | MTR_5g026590 | 35.329 | 334 | 191 | 7 | 272 | 597 | 84 | 400 | 5.44e-51 | 191 |
| MS.gene08258.t1 | MTR_3g063040 | 36.550 | 342 | 196 | 9 | 266 | 597 | 5 | 335 | 1.59e-50 | 192 |
| MS.gene08258.t1 | MTR_1g083250 | 32.203 | 236 | 141 | 7 | 250 | 471 | 135 | 365 | 3.85e-26 | 115 |
| MS.gene08258.t1 | MTR_1g083250 | 45.545 | 101 | 55 | 0 | 497 | 597 | 510 | 610 | 3.56e-21 | 99.4 |
| MS.gene08258.t1 | MTR_1g083250 | 32.203 | 236 | 141 | 7 | 250 | 471 | 135 | 365 | 6.93e-26 | 115 |
| MS.gene08258.t1 | MTR_1g083250 | 33.679 | 193 | 106 | 5 | 497 | 669 | 510 | 700 | 1.87e-21 | 100 |
| MS.gene08258.t1 | MTR_1g083250 | 32.203 | 236 | 141 | 7 | 250 | 471 | 135 | 365 | 8.63e-26 | 114 |
| MS.gene08258.t1 | MTR_1g083250 | 33.679 | 193 | 106 | 5 | 497 | 669 | 510 | 700 | 1.87e-21 | 100 |
| MS.gene08258.t1 | MTR_5g027840 | 24.438 | 356 | 230 | 9 | 268 | 597 | 114 | 456 | 6.02e-17 | 85.5 |
| MS.gene08258.t1 | MTR_2g100230 | 26.205 | 332 | 220 | 10 | 282 | 597 | 122 | 444 | 1.90e-16 | 84.0 |
| MS.gene08258.t1 | MTR_3g467550 | 25.356 | 351 | 219 | 11 | 282 | 603 | 112 | 448 | 3.13e-14 | 77.0 |
| MS.gene08258.t1 | MTR_3g467550 | 25.419 | 358 | 210 | 12 | 282 | 603 | 143 | 479 | 3.27e-14 | 77.0 |
| MS.gene08258.t1 | MTR_4g134170 | 23.238 | 383 | 244 | 15 | 267 | 609 | 296 | 668 | 3.46e-14 | 77.4 |
| MS.gene08258.t1 | MTR_2g032630 | 23.188 | 345 | 239 | 10 | 274 | 602 | 514 | 848 | 7.48e-14 | 76.6 |
| MS.gene08258.t1 | MTR_4g105100 | 24.189 | 339 | 218 | 12 | 282 | 597 | 228 | 550 | 2.51e-13 | 74.3 |
| MS.gene08258.t1 | MTR_6g005550 | 24.501 | 351 | 223 | 13 | 274 | 600 | 183 | 515 | 5.38e-13 | 73.6 |
| MS.gene08258.t1 | MTR_1g095810 | 33.981 | 103 | 68 | 0 | 496 | 598 | 398 | 500 | 1.62e-12 | 71.6 |
| MS.gene08258.t1 | MTR_2g438110 | 29.231 | 130 | 90 | 1 | 493 | 620 | 272 | 401 | 2.34e-12 | 70.5 |
| MS.gene08258.t1 | MTR_6g033070 | 24.523 | 367 | 222 | 15 | 267 | 600 | 149 | 493 | 2.92e-12 | 70.9 |
| MS.gene08258.t1 | MTR_7g100820 | 23.973 | 438 | 288 | 14 | 207 | 615 | 76 | 497 | 6.09e-12 | 69.7 |
| MS.gene08258.t1 | MTR_3g083690 | 22.599 | 354 | 242 | 10 | 282 | 608 | 171 | 519 | 3.62e-11 | 67.4 |
| MS.gene08258.t1 | MTR_1g026830 | 31.356 | 118 | 76 | 1 | 481 | 598 | 390 | 502 | 3.73e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08258.t1 | AT1G27880 | 54.118 | 935 | 376 | 14 | 3 | 913 | 1 | 906 | 0.0 | 932 |
| MS.gene08258.t1 | AT1G27880 | 53.661 | 874 | 352 | 14 | 3 | 852 | 1 | 845 | 0.0 | 836 |
| MS.gene08258.t1 | AT4G35740 | 36.667 | 420 | 223 | 12 | 260 | 644 | 19 | 430 | 2.09e-63 | 228 |
| MS.gene08258.t1 | AT1G10930 | 37.079 | 356 | 210 | 7 | 270 | 616 | 446 | 796 | 5.78e-60 | 223 |
| MS.gene08258.t1 | AT3G05740 | 35.246 | 366 | 218 | 9 | 254 | 609 | 103 | 459 | 8.13e-59 | 210 |
| MS.gene08258.t1 | AT1G31360 | 38.348 | 339 | 191 | 8 | 272 | 597 | 84 | 417 | 1.00e-58 | 210 |
| MS.gene08258.t1 | AT1G31360 | 38.348 | 339 | 191 | 8 | 272 | 597 | 84 | 417 | 1.00e-58 | 210 |
| MS.gene08258.t1 | AT1G31360 | 38.348 | 339 | 191 | 8 | 272 | 597 | 84 | 417 | 1.37e-58 | 211 |
| MS.gene08258.t1 | AT1G31360 | 38.348 | 339 | 191 | 8 | 272 | 597 | 84 | 417 | 2.88e-58 | 210 |
| MS.gene08258.t1 | AT1G31360 | 38.348 | 339 | 191 | 8 | 272 | 597 | 84 | 417 | 8.93e-58 | 210 |
| MS.gene08258.t1 | AT3G05740 | 36.441 | 354 | 206 | 9 | 254 | 597 | 188 | 532 | 9.92e-58 | 209 |
| MS.gene08258.t1 | AT1G31360 | 38.348 | 339 | 191 | 8 | 272 | 597 | 84 | 417 | 1.75e-57 | 211 |
| MS.gene08258.t1 | AT1G31360 | 38.348 | 339 | 191 | 8 | 272 | 597 | 118 | 451 | 1.83e-57 | 211 |
| MS.gene08258.t1 | AT1G31360 | 38.047 | 297 | 166 | 8 | 314 | 597 | 1 | 292 | 8.29e-45 | 171 |
| MS.gene08258.t1 | AT4G35740 | 33.136 | 338 | 184 | 11 | 341 | 644 | 8 | 337 | 2.29e-38 | 152 |
| MS.gene08258.t1 | AT5G27680 | 32.877 | 219 | 124 | 7 | 268 | 471 | 29 | 239 | 2.02e-25 | 113 |
| MS.gene08258.t1 | AT5G27680 | 34.737 | 190 | 102 | 5 | 497 | 665 | 371 | 559 | 3.12e-21 | 100 |
| MS.gene08258.t1 | AT5G27680 | 32.877 | 219 | 124 | 7 | 268 | 471 | 159 | 369 | 3.09e-25 | 113 |
| MS.gene08258.t1 | AT5G27680 | 32.877 | 219 | 124 | 7 | 268 | 471 | 159 | 369 | 3.61e-25 | 112 |
| MS.gene08258.t1 | AT5G27680 | 34.737 | 190 | 102 | 5 | 497 | 665 | 501 | 689 | 4.01e-21 | 100 |
| MS.gene08258.t1 | AT5G27680 | 32.877 | 219 | 124 | 7 | 268 | 471 | 159 | 369 | 3.61e-25 | 112 |
| MS.gene08258.t1 | AT5G27680 | 34.737 | 190 | 102 | 5 | 497 | 665 | 501 | 689 | 4.01e-21 | 100 |
| MS.gene08258.t1 | AT5G27680 | 32.877 | 219 | 124 | 7 | 268 | 471 | 159 | 369 | 3.61e-25 | 112 |
| MS.gene08258.t1 | AT5G27680 | 34.737 | 190 | 102 | 5 | 497 | 665 | 501 | 689 | 4.01e-21 | 100 |
| MS.gene08258.t1 | AT5G27680 | 32.877 | 219 | 124 | 7 | 268 | 471 | 159 | 369 | 3.61e-25 | 112 |
| MS.gene08258.t1 | AT5G27680 | 34.737 | 190 | 102 | 5 | 497 | 665 | 501 | 689 | 4.01e-21 | 100 |
| MS.gene08258.t1 | AT5G63120 | 23.478 | 345 | 229 | 9 | 274 | 597 | 184 | 514 | 2.43e-15 | 80.9 |
| MS.gene08258.t1 | AT4G33370 | 24.566 | 346 | 216 | 10 | 282 | 598 | 124 | 453 | 2.88e-15 | 80.5 |
| MS.gene08258.t1 | AT1G55150 | 26.269 | 335 | 216 | 9 | 282 | 597 | 126 | 448 | 3.73e-15 | 79.7 |
| MS.gene08258.t1 | AT1G31970 | 25.397 | 378 | 243 | 11 | 247 | 597 | 105 | 470 | 5.70e-15 | 79.3 |
| MS.gene08258.t1 | AT1G55150 | 26.606 | 327 | 209 | 9 | 290 | 597 | 159 | 473 | 7.29e-15 | 79.0 |
| MS.gene08258.t1 | AT3G01540 | 23.714 | 350 | 233 | 11 | 271 | 600 | 174 | 509 | 1.81e-14 | 78.2 |
| MS.gene08258.t1 | AT3G01540 | 23.714 | 350 | 233 | 11 | 271 | 600 | 174 | 509 | 1.98e-14 | 77.8 |
| MS.gene08258.t1 | AT3G01540 | 23.714 | 350 | 233 | 11 | 271 | 600 | 174 | 509 | 1.98e-14 | 77.8 |
| MS.gene08258.t1 | AT3G01540 | 23.714 | 350 | 233 | 11 | 271 | 600 | 174 | 509 | 1.98e-14 | 77.8 |
| MS.gene08258.t1 | AT5G14610 | 22.905 | 358 | 236 | 13 | 267 | 600 | 179 | 520 | 5.31e-13 | 73.6 |
| MS.gene08258.t1 | AT5G14610 | 22.905 | 358 | 236 | 13 | 267 | 600 | 171 | 512 | 5.44e-13 | 73.6 |
| MS.gene08258.t1 | AT5G14610 | 22.905 | 358 | 236 | 13 | 267 | 600 | 171 | 512 | 5.49e-13 | 73.6 |
| MS.gene08258.t1 | AT5G14610 | 22.636 | 349 | 232 | 11 | 274 | 600 | 248 | 580 | 1.33e-12 | 72.4 |
| MS.gene08258.t1 | AT5G51280 | 23.714 | 350 | 214 | 11 | 282 | 598 | 173 | 502 | 1.36e-12 | 72.0 |
| MS.gene08258.t1 | AT2G33730 | 22.372 | 371 | 230 | 13 | 282 | 609 | 340 | 695 | 1.49e-12 | 72.0 |
| MS.gene08258.t1 | AT5G14610 | 35.238 | 105 | 67 | 1 | 496 | 600 | 278 | 381 | 2.11e-12 | 71.2 |
| MS.gene08258.t1 | AT5G14610 | 35.238 | 105 | 67 | 1 | 496 | 600 | 278 | 381 | 2.11e-12 | 71.2 |
| MS.gene08258.t1 | AT3G19760 | 30.769 | 130 | 88 | 1 | 493 | 620 | 274 | 403 | 2.24e-12 | 70.5 |
Find 185 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGTAAGGGTTTACGAATTT+TGG | 0.198750 | 4.1:+15439044 | None:intergenic |
| CAATTGCCTCCGCTCATTTC+GGG | 0.221496 | 4.1:-15438364 | MS.gene08258:CDS |
| ATGCTTGCAAAGGATAATAT+TGG | 0.238086 | 4.1:-15432793 | MS.gene08258:CDS |
| TTCTTGTTCGGGAATAATTT+CGG | 0.253382 | 4.1:+15439200 | None:intergenic |
| CAGCCTACCCTTATACAATA+TGG | 0.255516 | 4.1:-15432263 | MS.gene08258:CDS |
| CAGCAATAGCAGAAACCTTT+TGG | 0.258260 | 4.1:+15434882 | None:intergenic |
| ACATCTCATCATCATAAAAT+AGG | 0.269389 | 4.1:+15436093 | None:intergenic |
| GTATACCAAGATAGACTTTA+AGG | 0.273733 | 4.1:-15431893 | MS.gene08258:CDS |
| CATAGTATACTGCAAATTTC+AGG | 0.277071 | 4.1:-15437379 | MS.gene08258:intron |
| GAAAATTTGGTAGTGGTAAA+AGG | 0.277686 | 4.1:-15438816 | MS.gene08258:CDS |
| CCGATAGTCAAGGCACTAAA+AGG | 0.286757 | 4.1:-15438919 | MS.gene08258:CDS |
| TGAAGCTTCTGATGAGAATT+TGG | 0.290524 | 4.1:-15438596 | MS.gene08258:CDS |
| TTTGGAGAATGAAATTGATT+TGG | 0.292930 | 4.1:+15439062 | None:intergenic |
| ATAATATTGGATTACTTTGC+TGG | 0.294888 | 4.1:-15432780 | MS.gene08258:CDS |
| ACAATTGCCTCCGCTCATTT+CGG | 0.302918 | 4.1:-15438365 | MS.gene08258:CDS |
| TCGACTAATCCAAACCTTTA+GGG | 0.310744 | 4.1:+15434469 | None:intergenic |
| TATGGGGTAAAACCCATTTC+TGG | 0.313223 | 4.1:-15432245 | MS.gene08258:intron |
| AACTGATTTGTTAATTCAAC+TGG | 0.319696 | 4.1:+15434497 | None:intergenic |
| GGCCTACTGTTATAGGATTC+TGG | 0.324072 | 4.1:-15433392 | MS.gene08258:CDS |
| ACACTAGCACCTATCAAATT+AGG | 0.325281 | 4.1:+15438949 | None:intergenic |
| TCTTGTTCGGGAATAATTTC+GGG | 0.325867 | 4.1:+15439201 | None:intergenic |
| AGGACATGGCCTACTGTTAT+AGG | 0.330949 | 4.1:-15433399 | MS.gene08258:CDS |
| TTATTCTAAATGCGCACTTA+AGG | 0.353628 | 4.1:-15437587 | MS.gene08258:CDS |
| ATCAACAACCGGTTCGGCTT+CGG | 0.359769 | 4.1:+15439008 | None:intergenic |
| GGCTGTGTCCCTTGCCCAAA+AGG | 0.373276 | 4.1:-15434897 | MS.gene08258:CDS |
| GAAACTGGAAGAGGTGGTTT+TGG | 0.373861 | 4.1:+15439285 | None:intergenic |
| ACATACTCTTCCAGACTTCC+AGG | 0.383363 | 4.1:+15436250 | None:intergenic |
| TATTCTAAATGCGCACTTAA+GGG | 0.388305 | 4.1:-15437586 | MS.gene08258:CDS |
| GGAAGTTTCTAGATTGAGTA+AGG | 0.388344 | 4.1:+15439029 | None:intergenic |
| GGGTTTAGGAAGGGGTTTAT+TGG | 0.388852 | 4.1:+15439224 | None:intergenic |
| AAGGGGAAAGATTCTTGTTC+GGG | 0.395512 | 4.1:+15439189 | None:intergenic |
| TTACAGTTTACCTGGAAGTC+TGG | 0.398808 | 4.1:-15436260 | MS.gene08258:CDS |
| TACGCTTGTTGTTAGTCCTT+TGG | 0.400050 | 4.1:-15438413 | MS.gene08258:CDS |
| GGTGAACTTGGTTGTTGTCT+TGG | 0.401617 | 4.1:+15439315 | None:intergenic |
| GCGATTAAGAATGTGCTTGC+TGG | 0.402170 | 4.1:-15438517 | MS.gene08258:CDS |
| TTTGTGAAATTGAATTTGAA+TGG | 0.407525 | 4.1:-15438880 | MS.gene08258:CDS |
| AAGAAACATCCTAATTTGAT+AGG | 0.411502 | 4.1:-15438958 | MS.gene08258:CDS |
| AATATCCAGGGCAGACATAA+TGG | 0.413104 | 4.1:+15437623 | None:intergenic |
| GAGTGAGAAGATGAAGTTGA+AGG | 0.417070 | 4.1:+15439114 | None:intergenic |
| AAATCAGTTGTATGCCCTAA+AGG | 0.419124 | 4.1:-15434483 | MS.gene08258:intron |
| GTTGTTGCAACTGTGGCATT+TGG | 0.419325 | 4.1:-15436740 | MS.gene08258:CDS |
| TTCTGTCTGTTATCTCTGGT+GGG | 0.425312 | 4.1:-15437929 | MS.gene08258:CDS |
| GAATTTCTGTCTGTTATCTC+TGG | 0.426044 | 4.1:-15437933 | MS.gene08258:CDS |
| AGCCTACCCTTATACAATAT+GGG | 0.426403 | 4.1:-15432262 | MS.gene08258:CDS |
| TTTCCTGCGGGCAGATATAA+AGG | 0.426465 | 4.1:-15432465 | MS.gene08258:intron |
| GCTTCGTCAAGGCACAATAA+AGG | 0.426914 | 4.1:-15438200 | MS.gene08258:intron |
| TAGAAGTAAACGTATAAAAT+CGG | 0.428317 | 4.1:-15438752 | MS.gene08258:CDS |
| AGAAACTTCCGAAGCCGAAC+CGG | 0.431878 | 4.1:-15439016 | MS.gene08258:CDS |
| AGATATTACACGATGGTTAT+CGG | 0.435170 | 4.1:-15433338 | MS.gene08258:CDS |
| GTGAGGGGATGGAAGGGAAG+GGG | 0.436156 | 4.1:+15439172 | None:intergenic |
| TTTCACAAAATTTCCTTCTC+CGG | 0.436617 | 4.1:+15438894 | None:intergenic |
| TTTCTGTCTGTTATCTCTGG+TGG | 0.437888 | 4.1:-15437930 | MS.gene08258:CDS |
| TGCAGAATCAACAACCGGTT+CGG | 0.440717 | 4.1:+15439002 | None:intergenic |
| CCCATGTCATTTGCCACAGT+TGG | 0.444192 | 4.1:+15434527 | None:intergenic |
| TGATGAGGAGGAGGATGGTA+TGG | 0.445277 | 4.1:-15438707 | MS.gene08258:CDS |
| AAGTGAGGGGATGGAAGGGA+AGG | 0.445403 | 4.1:+15439170 | None:intergenic |
| ATCGGAAGTTGAAAGTTGTA+AGG | 0.447577 | 4.1:-15433320 | MS.gene08258:intron |
| CATATTGTATAAGGGTAGGC+TGG | 0.448678 | 4.1:+15432264 | None:intergenic |
| AAGTTGTTGAAATTGATTCA+TGG | 0.451160 | 4.1:-15438571 | MS.gene08258:CDS |
| ATCATAAAATAGGTGACAAT+AGG | 0.453000 | 4.1:+15436103 | None:intergenic |
| GGACAACCTCCCATCCCTTC+CGG | 0.453112 | 4.1:+15436124 | None:intergenic |
| GGACTAGATAAAAGAGATGT+TGG | 0.458565 | 4.1:-15436713 | MS.gene08258:CDS |
| CACCACCTTAAAGTCTATCT+TGG | 0.460065 | 4.1:+15431888 | None:intergenic |
| TGTTGAGAATGCAAAGCAAC+AGG | 0.462500 | 4.1:-15438683 | MS.gene08258:CDS |
| GGCTACGTACAGGAGTTGTT+TGG | 0.463664 | 4.1:-15436905 | MS.gene08258:CDS |
| GAAGGGGAAAGATTCTTGTT+CGG | 0.466450 | 4.1:+15439188 | None:intergenic |
| ATAGGACGTGCCGGAAGGGA+TGG | 0.469051 | 4.1:-15436134 | MS.gene08258:CDS |
| GTTCGTTGTCGGATGTTGAA+AGG | 0.469108 | 4.1:+15439147 | None:intergenic |
| AATTGATTTGGAGAAGAATC+CGG | 0.470308 | 4.1:+15439074 | None:intergenic |
| AATAGTAATGGCAGCAATAG+TGG | 0.470939 | 4.1:-15438784 | MS.gene08258:CDS |
| TGCAACTGTGGCATTTGGCA+TGG | 0.471083 | 4.1:-15436735 | MS.gene08258:CDS |
| AGATCCGTCGGAGTCTGAAT+CGG | 0.477155 | 4.1:+15439356 | None:intergenic |
| AAAGGAAGTGAGGGGATGGA+AGG | 0.478336 | 4.1:+15439165 | None:intergenic |
| CGCTCTTCTAAGCAGTGCTC+AGG | 0.478699 | 4.1:-15438341 | MS.gene08258:intron |
| AGTGAGGGGATGGAAGGGAA+GGG | 0.479047 | 4.1:+15439171 | None:intergenic |
| AGAAATAACTTATGAAATGA+AGG | 0.481059 | 4.1:-15433419 | MS.gene08258:CDS |
| ATTACCCTCGCAACAGCTCT+TGG | 0.487754 | 4.1:+15432303 | None:intergenic |
| TCTTCATTCAAGAATCGCTC+TGG | 0.488566 | 4.1:+15437954 | None:intergenic |
| AAGGAAGTGAGGGGATGGAA+GGG | 0.488949 | 4.1:+15439166 | None:intergenic |
| ATATCAAACCTGCGTGAAGC+AGG | 0.492622 | 4.1:+15435858 | None:intergenic |
| GAATGGGCATTGTAGGAGAT+AGG | 0.495642 | 4.1:-15436152 | MS.gene08258:intron |
| TAGGACGTGCCGGAAGGGAT+GGG | 0.496615 | 4.1:-15436133 | MS.gene08258:CDS |
| GCAACTGTGGCATTTGGCAT+GGG | 0.498488 | 4.1:-15436734 | MS.gene08258:CDS |
| TTTGGCGGTGATGGTGAACT+TGG | 0.500420 | 4.1:+15439303 | None:intergenic |
| CGATTAAGAATGTGCTTGCT+GGG | 0.501188 | 4.1:-15438516 | MS.gene08258:CDS |
| GAGCGTCAGACGTTCGTTGT+CGG | 0.501622 | 4.1:+15439136 | None:intergenic |
| TTGTGAAATTGAATTTGAAT+GGG | 0.503178 | 4.1:-15438879 | MS.gene08258:CDS |
| AGATGCCATTATGTCTGCCC+TGG | 0.503557 | 4.1:-15437628 | MS.gene08258:CDS |
| TTATAGAATGAAAGACCTAC+TGG | 0.506852 | 4.1:-15437442 | MS.gene08258:intron |
| AACAGGAAAAGAAGAATGGT+TGG | 0.514174 | 4.1:-15438666 | MS.gene08258:CDS |
| TCCAACTGTGGCAAATGACA+TGG | 0.515681 | 4.1:-15434528 | MS.gene08258:CDS |
| GCACTAAAAGGCGCCGGAGA+AGG | 0.515717 | 4.1:-15438907 | MS.gene08258:CDS |
| GTTGAAAGGAAGTGAGGGGA+TGG | 0.516695 | 4.1:+15439161 | None:intergenic |
| GGTGGTGATGGAAGCAGCTA+AGG | 0.525244 | 4.1:-15431872 | MS.gene08258:CDS |
| AATTGAATTTGAATGGGAAG+AGG | 0.525991 | 4.1:-15438873 | MS.gene08258:CDS |
| GATAGACTTTAAGGTGGTGA+TGG | 0.527217 | 4.1:-15431884 | MS.gene08258:CDS |
| GCAAGAAAATTGATCAAAGC+AGG | 0.527941 | 4.1:-15432737 | MS.gene08258:intron |
| ATCACACTTCATGCTTGCAA+AGG | 0.529036 | 4.1:-15432803 | MS.gene08258:CDS |
| GAACTTGGTTGTTGTCTTGG+CGG | 0.531364 | 4.1:+15439318 | None:intergenic |
| GGAGAAGAATCCGGCAGGGA+GGG | 0.536997 | 4.1:+15439083 | None:intergenic |
| CGGATGTTGAAAGGAAGTGA+GGG | 0.537562 | 4.1:+15439156 | None:intergenic |
| CTATTGCTGTGATTCTGAAA+AGG | 0.538068 | 4.1:-15434868 | MS.gene08258:intron |
| TTGTTTGAAACTGGAAGAGG+TGG | 0.539207 | 4.1:+15439279 | None:intergenic |
| ACAGGAAAAGAAGAATGGTT+GGG | 0.539988 | 4.1:-15438665 | MS.gene08258:CDS |
| CCTGCTGACAAAAGCTCCTG+TGG | 0.542681 | 4.1:-15435906 | MS.gene08258:CDS |
| TCATAGTGGTATTTCTGCAA+AGG | 0.548833 | 4.1:-15436933 | MS.gene08258:CDS |
| CTTCATAAGAGTCTTAATGT+AGG | 0.549838 | 4.1:-15437693 | MS.gene08258:CDS |
| GATTTGTGCAAGGAATATCC+AGG | 0.550259 | 4.1:+15437610 | None:intergenic |
| TTATTGTGCCTTGACGAAGC+TGG | 0.551129 | 4.1:+15438203 | None:intergenic |
| GTAATTCATTACAGTTTACC+TGG | 0.551307 | 4.1:-15436268 | MS.gene08258:CDS |
| AAATGAATGCAAAGTGTTGG+AGG | 0.552542 | 4.1:-15438641 | MS.gene08258:CDS |
| AAAGGAACGTGGCTACGTAC+AGG | 0.554701 | 4.1:-15436915 | MS.gene08258:CDS |
| AACTTCGTAGTCTAATGTAC+AGG | 0.555989 | 4.1:-15436064 | MS.gene08258:intron |
| TCGGATGTTGAAAGGAAGTG+AGG | 0.557472 | 4.1:+15439155 | None:intergenic |
| CATACGCAGTCGTTTCCTGC+GGG | 0.558788 | 4.1:-15432477 | MS.gene08258:intron |
| ATATTGTATAAGGGTAGGCT+GGG | 0.562876 | 4.1:+15432265 | None:intergenic |
| CGATGATGATGATGAGGAGG+AGG | 0.563127 | 4.1:-15438716 | MS.gene08258:CDS |
| GTCAAGGCACTAAAAGGCGC+CGG | 0.563462 | 4.1:-15438913 | MS.gene08258:CDS |
| ATCATTTAGAGTTATCATAG+TGG | 0.565678 | 4.1:-15436947 | MS.gene08258:intron |
| AAGCAACAGGAAAAGAAGAA+TGG | 0.566070 | 4.1:-15438670 | MS.gene08258:CDS |
| GATGAGGAGGAGGATGGTAT+GGG | 0.566294 | 4.1:-15438706 | MS.gene08258:CDS |
| AGGCGATGATGATGATGAGG+AGG | 0.566831 | 4.1:-15438719 | MS.gene08258:CDS |
| ATAAAATCGGAACACAAAGA+AGG | 0.567266 | 4.1:-15438739 | MS.gene08258:CDS |
| TTTGAATGATAACAACATCA+AGG | 0.569180 | 4.1:-15437062 | MS.gene08258:CDS |
| GGAAAATGAATGCAAAGTGT+TGG | 0.569609 | 4.1:-15438644 | MS.gene08258:CDS |
| TCTATCGAAACCCTCCCTGC+CGG | 0.570984 | 4.1:-15439093 | MS.gene08258:CDS |
| GCTCTGAGTCTCATGAATGA+AGG | 0.573682 | 4.1:+15437723 | None:intergenic |
| ATCAATAACAACAAGTGAGA+CGG | 0.574473 | 4.1:+15437902 | None:intergenic |
| ACCCCATATTGTATAAGGGT+AGG | 0.574497 | 4.1:+15432260 | None:intergenic |
| TGAAGAAATGTGAGATCCGT+CGG | 0.576644 | 4.1:+15439344 | None:intergenic |
| CTTGTTCGGGAATAATTTCG+GGG | 0.580017 | 4.1:+15439202 | None:intergenic |
| GATTTGGAGAAGAATCCGGC+AGG | 0.580592 | 4.1:+15439078 | None:intergenic |
| TTCAGATCTGAAAATAAGCA+CGG | 0.583131 | 4.1:-15434569 | MS.gene08258:intron |
| CATAATGGCATCTAAAGTCA+TGG | 0.585243 | 4.1:+15437638 | None:intergenic |
| GGAGATAGGACGTGCCGGAA+GGG | 0.586499 | 4.1:-15436138 | MS.gene08258:CDS |
| TGTGGTAACGCCGATAGTCA+AGG | 0.586656 | 4.1:-15438929 | MS.gene08258:CDS |
| AAGCTGGTTGAGTGTTTCAG+AGG | 0.587339 | 4.1:+15438219 | None:intergenic |
| AAGTCTGGAAGAGTATGTAC+AGG | 0.589387 | 4.1:-15436245 | MS.gene08258:intron |
| CCAACTGTGGCAAATGACAT+GGG | 0.590683 | 4.1:-15434527 | MS.gene08258:CDS |
| GATGATGATGAGGAGGAGGA+TGG | 0.591373 | 4.1:-15438712 | MS.gene08258:CDS |
| GAAGTTTCTAGATTGAGTAA+GGG | 0.593349 | 4.1:+15439030 | None:intergenic |
| CTGCTGACAAAAGCTCCTGT+GGG | 0.597436 | 4.1:-15435905 | MS.gene08258:CDS |
| AAGCACATTGTATATCTGAA+TGG | 0.600670 | 4.1:-15437878 | MS.gene08258:intron |
| TGATAACAACATCAAGGCAA+AGG | 0.601528 | 4.1:-15437056 | MS.gene08258:intron |
| TTGTAGGAGATAGGACGTGC+CGG | 0.602571 | 4.1:-15436143 | MS.gene08258:intron |
| AGGAGATAGGACGTGCCGGA+AGG | 0.602725 | 4.1:-15436139 | MS.gene08258:CDS |
| GACGTGCCGGAAGGGATGGG+AGG | 0.603769 | 4.1:-15436130 | MS.gene08258:CDS |
| TAATTTGATAGGTGCTAGTG+TGG | 0.604367 | 4.1:-15438947 | MS.gene08258:CDS |
| TTACACCAAGAGCTGTTGCG+AGG | 0.607759 | 4.1:-15432308 | MS.gene08258:CDS |
| TTTAGAATAAGATTTGTGCA+AGG | 0.610553 | 4.1:+15437600 | None:intergenic |
| TATGAAGGTTGTTGCAACTG+TGG | 0.610759 | 4.1:-15436747 | MS.gene08258:intron |
| TACACCAAGAGCTGTTGCGA+GGG | 0.610987 | 4.1:-15432307 | MS.gene08258:CDS |
| AATCTATGTGATAAGATGAA+CGG | 0.611074 | 4.1:-15432840 | MS.gene08258:CDS |
| GCCTACCCTTATACAATATG+GGG | 0.613022 | 4.1:-15432261 | MS.gene08258:CDS |
| TGAGTCTCATGAATGAAGGT+CGG | 0.613163 | 4.1:+15437727 | None:intergenic |
| TCAAAGAACCTGCTTCACGC+AGG | 0.615491 | 4.1:-15435866 | MS.gene08258:CDS |
| AGAAGGCGATGATGATGATG+AGG | 0.617816 | 4.1:-15438722 | MS.gene08258:CDS |
| CAGGTTTGATATGAAAGAAG+AGG | 0.626887 | 4.1:-15435847 | MS.gene08258:intron |
| CAACTGTGGCAAATGACATG+GGG | 0.630786 | 4.1:-15434526 | MS.gene08258:CDS |
| TCACCTTTATATCTGCCCGC+AGG | 0.632718 | 4.1:+15432462 | None:intergenic |
| TCAATCATCAAAGCTACCAA+AGG | 0.636069 | 4.1:+15438397 | None:intergenic |
| ACACTCAACCAGCTTCGTCA+AGG | 0.636248 | 4.1:-15438211 | MS.gene08258:CDS |
| AGAAGAGCGCCCGAAATGAG+CGG | 0.636804 | 4.1:+15438355 | None:intergenic |
| TTGTTCGGGAATAATTTCGG+GGG | 0.640718 | 4.1:+15439203 | None:intergenic |
| GGTATTTCTGCAAAGGAACG+TGG | 0.641724 | 4.1:-15436926 | MS.gene08258:CDS |
| AACTTATGAAATGAAGGACA+TGG | 0.644073 | 4.1:-15433413 | MS.gene08258:CDS |
| ACACACGTTGCATTTGTCTG+TGG | 0.649253 | 4.1:+15435178 | None:intergenic |
| TTCCAGAATCCTATAACAGT+AGG | 0.656135 | 4.1:+15433390 | None:intergenic |
| AGCGACTTCCCAGCACCCGT+CGG | 0.662358 | 4.1:+15438472 | None:intergenic |
| CTAACAACAAGCGTAATCCC+AGG | 0.664152 | 4.1:+15438421 | None:intergenic |
| ATTTGGAGAAGAATCCGGCA+GGG | 0.667823 | 4.1:+15439079 | None:intergenic |
| AAGACTTCATAAGCACCAGT+AGG | 0.669892 | 4.1:+15437427 | None:intergenic |
| ACATACGCAGTCGTTTCCTG+CGG | 0.674845 | 4.1:-15432478 | MS.gene08258:intron |
| ATTTGTGCAAGGAATATCCA+GGG | 0.675764 | 4.1:+15437611 | None:intergenic |
| TGGAGAAGAATCCGGCAGGG+AGG | 0.677448 | 4.1:+15439082 | None:intergenic |
| AGAGCGCCCGAAATGAGCGG+AGG | 0.689601 | 4.1:+15438358 | None:intergenic |
| TGTTCGGGAATAATTTCGGG+GGG | 0.690236 | 4.1:+15439204 | None:intergenic |
| GCTGTTGCGAGGGTAATGCA+CGG | 0.692274 | 4.1:-15432297 | MS.gene08258:CDS |
| AACTGTGGCAAATGACATGG+GGG | 0.692492 | 4.1:-15434525 | MS.gene08258:CDS |
| GATTCCGATTCAGACTCCGA+CGG | 0.702398 | 4.1:-15439360 | MS.gene08258:CDS |
| TGAATGCAAAGTGTTGGAGG+AGG | 0.703820 | 4.1:-15438638 | MS.gene08258:CDS |
| TACCAAGATAGACTTTAAGG+TGG | 0.711526 | 4.1:-15431890 | MS.gene08258:CDS |
| GGATGTTGAAAGGAAGTGAG+GGG | 0.717854 | 4.1:+15439157 | None:intergenic |
| TGGTTCAAACAAGATCAGAG+TGG | 0.733769 | 4.1:-15436885 | MS.gene08258:intron |
| TATCAGCAGATATTACACGA+TGG | 0.752851 | 4.1:-15433345 | MS.gene08258:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 15431834 | 15439391 | 15431834 | ID=MS.gene08258 |
| chr4.1 | mRNA | 15431834 | 15439391 | 15431834 | ID=MS.gene08258.t1;Parent=MS.gene08258 |
| chr4.1 | exon | 15438342 | 15439391 | 15438342 | ID=MS.gene08258.t1.exon1;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15438342 | 15439391 | 15438342 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15438201 | 15438254 | 15438201 | ID=MS.gene08258.t1.exon2;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15438201 | 15438254 | 15438201 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15437879 | 15437991 | 15437879 | ID=MS.gene08258.t1.exon3;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15437879 | 15437991 | 15437879 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15437549 | 15437761 | 15437549 | ID=MS.gene08258.t1.exon4;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15437549 | 15437761 | 15437549 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15437380 | 15437458 | 15437380 | ID=MS.gene08258.t1.exon5;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15437380 | 15437458 | 15437380 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15437057 | 15437110 | 15437057 | ID=MS.gene08258.t1.exon6;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15437057 | 15437110 | 15437057 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15436886 | 15436960 | 15436886 | ID=MS.gene08258.t1.exon7;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15436886 | 15436960 | 15436886 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15436709 | 15436762 | 15436709 | ID=MS.gene08258.t1.exon8;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15436709 | 15436762 | 15436709 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15436246 | 15436290 | 15436246 | ID=MS.gene08258.t1.exon9;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15436246 | 15436290 | 15436246 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15436065 | 15436159 | 15436065 | ID=MS.gene08258.t1.exon10;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15436065 | 15436159 | 15436065 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15435848 | 15435977 | 15435848 | ID=MS.gene08258.t1.exon11;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15435848 | 15435977 | 15435848 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15435162 | 15435260 | 15435162 | ID=MS.gene08258.t1.exon12;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15435162 | 15435260 | 15435162 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15434869 | 15434924 | 15434869 | ID=MS.gene08258.t1.exon13;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15434869 | 15434924 | 15434869 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15434484 | 15434586 | 15434484 | ID=MS.gene08258.t1.exon14;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15434484 | 15434586 | 15434484 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15433321 | 15433449 | 15433321 | ID=MS.gene08258.t1.exon15;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15433321 | 15433449 | 15433321 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15432738 | 15432907 | 15432738 | ID=MS.gene08258.t1.exon16;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15432738 | 15432907 | 15432738 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15432466 | 15432490 | 15432466 | ID=MS.gene08258.t1.exon17;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15432466 | 15432490 | 15432466 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15432246 | 15432361 | 15432246 | ID=MS.gene08258.t1.exon18;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15432246 | 15432361 | 15432246 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| chr4.1 | exon | 15431834 | 15431921 | 15431834 | ID=MS.gene08258.t1.exon19;Parent=MS.gene08258.t1 |
| chr4.1 | CDS | 15431834 | 15431921 | 15431834 | ID=cds.MS.gene08258.t1;Parent=MS.gene08258.t1 |
| Gene Sequence |
| Protein sequence |