Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08316.t1 | XP_024630097.1 | 100 | 193 | 0 | 0 | 1 | 193 | 1 | 193 | 8.60E-106 | 392.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08316.t1 | Q558Z3 | 50.3 | 193 | 92 | 3 | 4 | 193 | 23 | 214 | 5.8e-50 | 198.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08316.t1 | A0A396GUT2 | 100.0 | 193 | 0 | 0 | 1 | 193 | 1 | 193 | 6.2e-106 | 392.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene08316 | MS.gene30239 | PPI |
| MS.gene056221 | MS.gene08316 | PPI |
| MS.gene08316 | MS.gene002052 | PPI |
| MS.gene047198 | MS.gene08316 | PPI |
| MS.gene068200 | MS.gene08316 | PPI |
| MS.gene08316 | MS.gene00619 | PPI |
| MS.gene08316 | MS.gene00621 | PPI |
| MS.gene08316 | MS.gene072056 | PPI |
| MS.gene09414 | MS.gene08316 | PPI |
| MS.gene040651 | MS.gene08316 | PPI |
| MS.gene08316 | MS.gene84016 | PPI |
| MS.gene08316 | MS.gene88509 | PPI |
| MS.gene08316 | MS.gene81861 | PPI |
| MS.gene08316 | MS.gene047316 | PPI |
| MS.gene60096 | MS.gene08316 | PPI |
| MS.gene073613 | MS.gene08316 | PPI |
| MS.gene08316 | MS.gene05320 | PPI |
| MS.gene08316 | MS.gene59983 | PPI |
| MS.gene016615 | MS.gene08316 | PPI |
| MS.gene08316 | MS.gene035458 | PPI |
| MS.gene042336 | MS.gene08316 | PPI |
| MS.gene039360 | MS.gene08316 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08316.t1 | MTR_0332s0040 | 100.000 | 187 | 0 | 0 | 1 | 187 | 1 | 187 | 4.28e-138 | 392 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08316.t1 | AT1G73820 | 78.238 | 193 | 42 | 0 | 1 | 193 | 1 | 193 | 2.66e-119 | 336 |
| MS.gene08316.t1 | AT1G73820 | 78.238 | 193 | 42 | 0 | 1 | 193 | 17 | 209 | 2.66e-119 | 337 |
Find 36 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAAACATGGTCTCTATTA+TGG | 0.222869 | 4.1:+16473632 | None:intergenic |
| AACGGTATTGATAGTCAATT+TGG | 0.243908 | 4.1:-16473605 | MS.gene08316:CDS |
| GAATCCTGCCAATGCTTAAA+AGG | 0.252032 | 4.1:-16475107 | MS.gene08316:CDS |
| GAACCAAATGTCTATGAATT+TGG | 0.253761 | 4.1:-16476326 | MS.gene08316:CDS |
| GGGTTCGATGTATCTTCTTA+TGG | 0.256941 | 4.1:-16476389 | MS.gene08316:CDS |
| GTGCTTCCATGCTTCTGTTT+TGG | 0.284804 | 4.1:+16476432 | None:intergenic |
| AAGGAATGCAGCTGTGAAAT+TGG | 0.321236 | 4.1:-16475088 | MS.gene08316:CDS |
| GTACCAAATTCATAGACATT+TGG | 0.395982 | 4.1:+16476323 | None:intergenic |
| TAAAGTCTGTCTTGCTCCTA+TGG | 0.406647 | 4.1:+16473555 | None:intergenic |
| GATGTATCTTCTTATGGAAC+AGG | 0.408399 | 4.1:-16476383 | MS.gene08316:CDS |
| GAGTGGAGCTACAAGCGAAA+TGG | 0.467833 | 4.1:-16475129 | MS.gene08316:intron |
| AGATTGAAGCTGTTGAATCA+TGG | 0.474304 | 4.1:-16473319 | MS.gene08316:CDS |
| GTATTTGATATGGTTGTTGA+AGG | 0.475037 | 4.1:-16474997 | MS.gene08316:intron |
| ACTAGCAATAACATCATCAA+TGG | 0.487232 | 4.1:+16473289 | None:intergenic |
| TCATCAAGCATATATTTGTA+AGG | 0.512106 | 4.1:+16476299 | None:intergenic |
| TGAAATTGGCACCTCAAAGA+TGG | 0.526468 | 4.1:-16475074 | MS.gene08316:CDS |
| GATTGAAGCTGTTGAATCAT+GGG | 0.531323 | 4.1:-16473318 | MS.gene08316:CDS |
| GGTTCTCTGAGGGAAGGACC+AGG | 0.532924 | 4.1:+16476344 | None:intergenic |
| GGTATTGATAGTCAATTTGG+AGG | 0.563161 | 4.1:-16473602 | MS.gene08316:CDS |
| GGTACCCACGTTAAGCTCCC+TGG | 0.567847 | 4.1:-16476362 | MS.gene08316:CDS |
| CATAGACATTTGGTTCTCTG+AGG | 0.569922 | 4.1:+16476333 | None:intergenic |
| ATAGACATTTGGTTCTCTGA+GGG | 0.571121 | 4.1:+16476334 | None:intergenic |
| ATCCAACCAAAACAGAAGCA+TGG | 0.589136 | 4.1:-16476438 | MS.gene08316:CDS |
| AATGAAGTTTCGTTACGCCA+TGG | 0.597155 | 4.1:-16476468 | MS.gene08316:CDS |
| AAGGACCAGGGAGCTTAACG+TGG | 0.600033 | 4.1:+16476357 | None:intergenic |
| ACATTTGGTTCTCTGAGGGA+AGG | 0.600394 | 4.1:+16476338 | None:intergenic |
| AACCACGAGGAAGCCGCCAT+AGG | 0.612265 | 4.1:-16473571 | MS.gene08316:CDS |
| TGGCAAGAAAATGCTGCTGA+TGG | 0.614390 | 4.1:-16475054 | MS.gene08316:CDS |
| CTCCTATGGCGGCTTCCTCG+TGG | 0.618433 | 4.1:+16473569 | None:intergenic |
| GTTCTCTGAGGGAAGGACCA+GGG | 0.632137 | 4.1:+16476345 | None:intergenic |
| AGTCTGTCTTGCTCCTATGG+CGG | 0.641994 | 4.1:+16473558 | None:intergenic |
| TTGGTTGGATGAACAAACCA+TGG | 0.652936 | 4.1:+16476451 | None:intergenic |
| TGAAGCTGTTGAATCATGGG+AGG | 0.684017 | 4.1:-16473315 | MS.gene08316:CDS |
| TGCTGATGGCATATTTGATG+TGG | 0.692771 | 4.1:-16475040 | MS.gene08316:CDS |
| AGGACCAGGGAGCTTAACGT+GGG | 0.701054 | 4.1:+16476358 | None:intergenic |
| GGAGGTCAAAGATAACCACG+AGG | 0.849826 | 4.1:-16473584 | MS.gene08316:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATTAAGTAAACAAA+AGG | + | chr4.1:16473487-16473506 | None:intergenic | 10.0% |
| !! | AAATAATTAAGTAAACAAAA+GGG | + | chr4.1:16473486-16473505 | None:intergenic | 10.0% |
| !! | AATGTGATATAAAAAAAAAA+GGG | + | chr4.1:16475750-16475769 | None:intergenic | 10.0% |
| !! | TAAAAAATGCAAATAAAAAA+AGG | + | chr4.1:16473460-16473479 | None:intergenic | 10.0% |
| !!! | AAATTTAAGTTTTAGTTTTA+TGG | - | chr4.1:16473613-16473632 | MS.gene08316:CDS | 10.0% |
| !!! | AATTTAAGTTTTAGTTTTAT+GGG | - | chr4.1:16473614-16473633 | MS.gene08316:CDS | 10.0% |
| !!! | GAGTTATATATTTTTAATTT+TGG | - | chr4.1:16476301-16476320 | MS.gene08316:CDS | 10.0% |
| !!! | TACTTAATTATTTTAGTTTT+AGG | - | chr4.1:16473493-16473512 | MS.gene08316:intron | 10.0% |
| !!! | TTTTGTTTTAAAAGAATTTT+AGG | - | chr4.1:16474002-16474021 | MS.gene08316:intron | 10.0% |
| !! | AAAATGAAAATTTAGATTTG+GGG | - | chr4.1:16473931-16473950 | MS.gene08316:intron | 15.0% |
| !! | AAATTAAAAACAAGCAAAAT+TGG | + | chr4.1:16473662-16473681 | None:intergenic | 15.0% |
| !! | CAATGTGATATAAAAAAAAA+AGG | + | chr4.1:16475751-16475770 | None:intergenic | 15.0% |
| !! | GAAAATGAAAATTTAGATTT+GGG | - | chr4.1:16473930-16473949 | MS.gene08316:intron | 15.0% |
| !! | TAATCAAAATTGTAAATAAC+AGG | + | chr4.1:16473560-16473579 | None:intergenic | 15.0% |
| !! | TGAAAATGAAAATTTAGATT+TGG | - | chr4.1:16473929-16473948 | MS.gene08316:intron | 15.0% |
| !!! | ATTTAAGTTTTAGTTTTATG+GGG | - | chr4.1:16473615-16473634 | MS.gene08316:CDS | 15.0% |
| !!! | GATTTTACTATTTAAGTTAT+TGG | - | chr4.1:16475895-16475914 | MS.gene08316:intron | 15.0% |
| !! | AAATGAAAATTTAGATTTGG+GGG | - | chr4.1:16473932-16473951 | MS.gene08316:intron | 20.0% |
| !! | AGACATGAAAATATTAAAAC+AGG | + | chr4.1:16476336-16476355 | None:intergenic | 20.0% |
| !! | TGATGATACTAAGAAATATT+GGG | - | chr4.1:16474424-16474443 | MS.gene08316:intron | 20.0% |
| !! | TGATGTTATAAATAAGTGAT+TGG | - | chr4.1:16475232-16475251 | MS.gene08316:intron | 20.0% |
| !!! | AGATTTGTGTATTTTTCATA+AGG | - | chr4.1:16473740-16473759 | MS.gene08316:intron | 20.0% |
| !!! | ATTAACATTAATTTGTCTAC+AGG | - | chr4.1:16473852-16473871 | MS.gene08316:intron | 20.0% |
| !!! | TGAAGAAAAAGTATTTGATA+TGG | - | chr4.1:16474698-16474717 | MS.gene08316:intron | 20.0% |
| !!! | TTTAATATTTTCATGTCTCA+TGG | - | chr4.1:16476338-16476357 | MS.gene08316:CDS | 20.0% |
| !!! | TTTAGTTTTAGTAGAATTTC+AGG | - | chr4.1:16473684-16473703 | MS.gene08316:intron | 20.0% |
| !!! | TTTTTCAGACAAAAAGTTAA+GGG | - | chr4.1:16475932-16475951 | MS.gene08316:intron | 20.0% |
| !!! | TTTTTTCAGACAAAAAGTTA+AGG | - | chr4.1:16475931-16475950 | MS.gene08316:intron | 20.0% |
| ! | AAAAGGAGTAAAAAAGACAA+AGG | + | chr4.1:16474739-16474758 | None:intergenic | 25.0% |
| ! | AATGAAAATTTAGATTTGGG+GGG | - | chr4.1:16473933-16473952 | MS.gene08316:intron | 25.0% |
| ! | ATAAAAAAAGGATACAGTTC+AGG | + | chr4.1:16473448-16473467 | None:intergenic | 25.0% |
| ! | ATAAAACATGGTCTCTATTA+TGG | + | chr4.1:16476076-16476095 | None:intergenic | 25.0% |
| ! | ATTAATGTTAATATCGTGTC+TGG | + | chr4.1:16473844-16473863 | None:intergenic | 25.0% |
| ! | CTATCCATAAAATATATCCA+TGG | + | chr4.1:16476368-16476387 | None:intergenic | 25.0% |
| ! | CTGATGATACTAAGAAATAT+TGG | - | chr4.1:16474423-16474442 | MS.gene08316:intron | 25.0% |
| ! | GATGATACTAAGAAATATTG+GGG | - | chr4.1:16474425-16474444 | MS.gene08316:intron | 25.0% |
| ! | TAAAAAAAGGATACAGTTCA+GGG | + | chr4.1:16473447-16473466 | None:intergenic | 25.0% |
| ! | TAACTAATGAGTCATCATAA+TGG | + | chr4.1:16475198-16475217 | None:intergenic | 25.0% |
| ! | TACAAAACAAGAATTCGAAA+TGG | + | chr4.1:16474530-16474549 | None:intergenic | 25.0% |
| ! | TAGGATTTAGTGAATAGTTT+GGG | - | chr4.1:16474090-16474109 | MS.gene08316:intron | 25.0% |
| ! | TCAGCTAAAAAAAATCGAAA+GGG | + | chr4.1:16473912-16473931 | None:intergenic | 25.0% |
| ! | TCATAAGGATTTATGATGAT+AGG | - | chr4.1:16473755-16473774 | MS.gene08316:intron | 25.0% |
| ! | TCATCAAGCATATATTTGTA+AGG | + | chr4.1:16473409-16473428 | None:intergenic | 25.0% |
| ! | TTAGATCAATCAAAGAGAAA+AGG | + | chr4.1:16474756-16474775 | None:intergenic | 25.0% |
| ! | TTAGGATTTAGTGAATAGTT+TGG | - | chr4.1:16474089-16474108 | MS.gene08316:intron | 25.0% |
| ! | TTCAGCTAAAAAAAATCGAA+AGG | + | chr4.1:16473913-16473932 | None:intergenic | 25.0% |
| ! | TTCAGCTAAAACAATCAAAA+GGG | + | chr4.1:16473595-16473614 | None:intergenic | 25.0% |
| ! | TTTCAGCTAAAACAATCAAA+AGG | + | chr4.1:16473596-16473615 | None:intergenic | 25.0% |
| !! | AACTGTTATGAACAACTTTT+TGG | + | chr4.1:16475367-16475386 | None:intergenic | 25.0% |
| !! | ACTTTCTTTTCAAAAGACAA+GGG | - | chr4.1:16473296-16473315 | MS.gene08316:CDS | 25.0% |
| !! | AGTTGCATTTTATATCTTAG+TGG | - | chr4.1:16475135-16475154 | MS.gene08316:intron | 25.0% |
| !! | ATACCGTTTTCAATAAAACA+TGG | + | chr4.1:16476088-16476107 | None:intergenic | 25.0% |
| !! | ATGTTTAGAGTAGTTAGTTA+TGG | - | chr4.1:16475296-16475315 | MS.gene08316:intron | 25.0% |
| !! | CTTACCATGGATATATTTTA+TGG | - | chr4.1:16476361-16476380 | MS.gene08316:CDS | 25.0% |
| !! | TGTATAATCTATGAAGTACT+GGG | - | chr4.1:16474123-16474142 | MS.gene08316:intron | 25.0% |
| !!! | AGACCATGTTTTATTGAAAA+CGG | - | chr4.1:16476082-16476101 | MS.gene08316:intron | 25.0% |
| !!! | TTTCGAATTCTTGTTTTGTA+TGG | - | chr4.1:16474530-16474549 | MS.gene08316:intron | 25.0% |
| !!! | TTTTTTCTTAAGCATAAGTG+AGG | - | chr4.1:16473516-16473535 | MS.gene08316:intron | 25.0% |
| ACTAGCAATAACATCATCAA+TGG | + | chr4.1:16476419-16476438 | None:intergenic | 30.0% | |
| AGGATTTATGATGATAGGTT+AGG | - | chr4.1:16473760-16473779 | MS.gene08316:intron | 30.0% | |
| ATAAAAAAAAAAGGGCAACC+CGG | + | chr4.1:16475742-16475761 | None:intergenic | 30.0% | |
| ATTGTAGAGAAAACTCTTTG+AGG | - | chr4.1:16474853-16474872 | MS.gene08316:intron | 30.0% | |
| CTACATAGTTGCAATTGTTA+TGG | - | chr4.1:16474988-16475007 | MS.gene08316:intron | 30.0% | |
| GAACATAGATACTAATGCAA+TGG | - | chr4.1:16476252-16476271 | MS.gene08316:intron | 30.0% | |
| GAACCAAATGTCTATGAATT+TGG | - | chr4.1:16473379-16473398 | MS.gene08316:intron | 30.0% | |
| GAATTGTGTGTTTCTCATAA+AGG | - | chr4.1:16474051-16474070 | MS.gene08316:intron | 30.0% | |
| GTACCAAATTCATAGACATT+TGG | + | chr4.1:16473385-16473404 | None:intergenic | 30.0% | |
| GTATTTGATATGGTTGTTGA+AGG | - | chr4.1:16474708-16474727 | MS.gene08316:intron | 30.0% | |
| GTGAAGACGAATAAAAAGTT+TGG | + | chr4.1:16474828-16474847 | None:intergenic | 30.0% | |
| GTGTATAATCTATGAAGTAC+TGG | - | chr4.1:16474122-16474141 | MS.gene08316:intron | 30.0% | |
| TAATCAGTAGCAAGATACAT+AGG | - | chr4.1:16475042-16475061 | MS.gene08316:CDS | 30.0% | |
| TAGGATTGAATGCATAGTAT+GGG | - | chr4.1:16473779-16473798 | MS.gene08316:intron | 30.0% | |
| TGAATAGTTTGGGAAAAAGA+TGG | - | chr4.1:16474100-16474119 | MS.gene08316:intron | 30.0% | |
| TGTTTCTCATAAAGGATTGA+GGG | - | chr4.1:16474059-16474078 | MS.gene08316:intron | 30.0% | |
| TTAGGATTGAATGCATAGTA+TGG | - | chr4.1:16473778-16473797 | MS.gene08316:intron | 30.0% | |
| TTTCATATACAACACTTTCG+TGG | - | chr4.1:16475840-16475859 | MS.gene08316:intron | 30.0% | |
| TTTCTGTAACGAATCAAGAT+AGG | - | chr4.1:16475065-16475084 | MS.gene08316:CDS | 30.0% | |
| ! | AATAATTGAGTTGTCAGTGT+CGG | - | chr4.1:16474212-16474231 | MS.gene08316:intron | 30.0% |
| ! | ACAGACTTTAGATTTTTGTC+AGG | - | chr4.1:16476163-16476182 | MS.gene08316:intron | 30.0% |
| ! | ATTTTGTAATTGAGGATGAG+GGG | - | chr4.1:16474448-16474467 | MS.gene08316:intron | 30.0% |
| ! | CACTTTCTTTTCAAAAGACA+AGG | - | chr4.1:16473295-16473314 | MS.gene08316:CDS | 30.0% |
| ! | GATTTTGTAATTGAGGATGA+GGG | - | chr4.1:16474447-16474466 | MS.gene08316:intron | 30.0% |
| ! | TACAGGAAGATGTGTATTTT+AGG | - | chr4.1:16473869-16473888 | MS.gene08316:intron | 30.0% |
| ! | TAGGCCTAAACTATTTTCTT+GGG | + | chr4.1:16475091-16475110 | None:intergenic | 30.0% |
| ! | TATTGGGGATTTTGTAATTG+AGG | - | chr4.1:16474440-16474459 | MS.gene08316:intron | 30.0% |
| ! | TGTTATATCACATTGATAGC+AGG | - | chr4.1:16475549-16475568 | MS.gene08316:intron | 30.0% |
| ! | TTAGGCCTAAACTATTTTCT+TGG | + | chr4.1:16475092-16475111 | None:intergenic | 30.0% |
| !! | AACGGTATTGATAGTCAATT+TGG | - | chr4.1:16476100-16476119 | MS.gene08316:intron | 30.0% |
| !! | TAAAGTTGTTTTCATGTGAC+TGG | - | chr4.1:16475595-16475614 | MS.gene08316:intron | 30.0% |
| !!! | CTAGTTTTGAGAAACAACAT+CGG | - | chr4.1:16476434-16476453 | MS.gene08316:CDS | 30.0% |
| !!! | TCTTGTTTTGTATGGTGAAA+TGG | - | chr4.1:16474538-16474557 | MS.gene08316:intron | 30.0% |
| AAGTTAAGGGCAAGATACAT+AGG | - | chr4.1:16475945-16475964 | MS.gene08316:intron | 35.0% | |
| AGATTGAAGCTGTTGAATCA+TGG | - | chr4.1:16476386-16476405 | MS.gene08316:CDS | 35.0% | |
| AGCCTCTTGTGTAAAAAACA+GGG | - | chr4.1:16475645-16475664 | MS.gene08316:intron | 35.0% | |
| ATCATAGTCCTTAGCTACTT+AGG | + | chr4.1:16475110-16475129 | None:intergenic | 35.0% | |
| ATCTGACACTGGTAGTAATT+TGG | - | chr4.1:16474160-16474179 | MS.gene08316:intron | 35.0% | |
| ATGCATAGTATGGGAAACAT+TGG | - | chr4.1:16473788-16473807 | MS.gene08316:intron | 35.0% | |
| CAAAATTGCCAGCATATCAA+AGG | + | chr4.1:16474388-16474407 | None:intergenic | 35.0% | |
| CTTGTGTAAAAAACAGGGTA+AGG | - | chr4.1:16475650-16475669 | MS.gene08316:intron | 35.0% | |
| GATGTATCTTCTTATGGAAC+AGG | - | chr4.1:16473322-16473341 | MS.gene08316:intron | 35.0% | |
| GATTGAAGCTGTTGAATCAT+GGG | - | chr4.1:16476387-16476406 | MS.gene08316:CDS | 35.0% | |
| GTGTATAATCTACGAAGTTC+TGG | - | chr4.1:16473810-16473829 | MS.gene08316:intron | 35.0% | |
| GTGTTTCTCATAAAGGATTG+AGG | - | chr4.1:16474058-16474077 | MS.gene08316:intron | 35.0% | |
| GTTAATATCGTGTCTGGTAT+CGG | + | chr4.1:16473838-16473857 | None:intergenic | 35.0% | |
| TAGGCCCAAGAAAATAGTTT+AGG | - | chr4.1:16475084-16475103 | MS.gene08316:CDS | 35.0% | |
| TAGTAATTTGGGAATGACTC+TGG | - | chr4.1:16474172-16474191 | MS.gene08316:intron | 35.0% | |
| TCACTTTCGATCAGAAGTAA+CGG | - | chr4.1:16474244-16474263 | MS.gene08316:intron | 35.0% | |
| TCTGACACTGGTAGTAATTT+GGG | - | chr4.1:16474161-16474180 | MS.gene08316:intron | 35.0% | |
| ! | ATATCACATTGATAGCAGGA+GGG | - | chr4.1:16475553-16475572 | MS.gene08316:intron | 35.0% |
| ! | CTTTTAACAGAACATGCGTT+TGG | - | chr4.1:16475482-16475501 | MS.gene08316:intron | 35.0% |
| ! | GACTTTAGATTTTTGTCAGG+AGG | - | chr4.1:16476166-16476185 | MS.gene08316:intron | 35.0% |
| ! | GAGTCATATCATGTTCTAGA+AGG | - | chr4.1:16475160-16475179 | MS.gene08316:intron | 35.0% |
| ! | GGATTTTGTAATTGAGGATG+AGG | - | chr4.1:16474446-16474465 | MS.gene08316:intron | 35.0% |
| ! | TATATCACATTGATAGCAGG+AGG | - | chr4.1:16475552-16475571 | MS.gene08316:intron | 35.0% |
| ! | TGATATGCTGGCAATTTTGT+TGG | - | chr4.1:16474389-16474408 | MS.gene08316:intron | 35.0% |
| !! | ATAGACATTTGGTTCTCTGA+GGG | + | chr4.1:16473374-16473393 | None:intergenic | 35.0% |
| !! | GGTATTGATAGTCAATTTGG+AGG | - | chr4.1:16476103-16476122 | MS.gene08316:intron | 35.0% |
| !!! | TACCCTGTTTTTTACACAAG+AGG | + | chr4.1:16475650-16475669 | None:intergenic | 35.0% |
| AAGGAATGCAGCTGTGAAAT+TGG | - | chr4.1:16474617-16474636 | MS.gene08316:intron | 40.0% | |
| AGTTTAGGCCTAAGTAGCTA+AGG | - | chr4.1:16475099-16475118 | MS.gene08316:CDS | 40.0% | |
| ATCCAACCAAAACAGAAGCA+TGG | - | chr4.1:16473267-16473286 | MS.gene08316:CDS | 40.0% | |
| CAGCCTCTTGTGTAAAAAAC+AGG | - | chr4.1:16475644-16475663 | MS.gene08316:intron | 40.0% | |
| CATAAAGGATTGAGGGTGAT+AGG | - | chr4.1:16474066-16474085 | MS.gene08316:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr4.1:16475676-16475695 | MS.gene08316:intron | 40.0% | |
| CTTCTGATCGAAAGTGAATC+AGG | + | chr4.1:16474241-16474260 | None:intergenic | 40.0% | |
| GAATCCTGCCAATGCTTAAA+AGG | - | chr4.1:16474598-16474617 | MS.gene08316:intron | 40.0% | |
| GCAAGATACATAGGTTTCTC+TGG | - | chr4.1:16475954-16475973 | MS.gene08316:intron | 40.0% | |
| GGAATGATTTCTGTACGCTT+TGG | - | chr4.1:16475975-16475994 | MS.gene08316:intron | 40.0% | |
| GGATGTATCCTTAACAAGAG+TGG | - | chr4.1:16474559-16474578 | MS.gene08316:intron | 40.0% | |
| GGGTTCGATGTATCTTCTTA+TGG | - | chr4.1:16473316-16473335 | MS.gene08316:CDS | 40.0% | |
| TAAAGTCTGTCTTGCTCCTA+TGG | + | chr4.1:16476153-16476172 | None:intergenic | 40.0% | |
| TAATTTGGGAATGACTCTGG+TGG | - | chr4.1:16474175-16474194 | MS.gene08316:intron | 40.0% | |
| TGAAATTGGCACCTCAAAGA+TGG | - | chr4.1:16474631-16474650 | MS.gene08316:intron | 40.0% | |
| TGCTGATGGCATATTTGATG+TGG | - | chr4.1:16474665-16474684 | MS.gene08316:intron | 40.0% | |
| TTCGAAATGGCATTTCCAAG+AGG | + | chr4.1:16474517-16474536 | None:intergenic | 40.0% | |
| TTGGTTGGATGAACAAACCA+TGG | + | chr4.1:16473257-16473276 | None:intergenic | 40.0% | |
| TTGTAGCTCCACTCTTGTTA+AGG | + | chr4.1:16474570-16474589 | None:intergenic | 40.0% | |
| ! | ACTCTTTGAGGAGCATGTTT+CGG | - | chr4.1:16474865-16474884 | MS.gene08316:intron | 40.0% |
| ! | GAGTGTTTTGCATCTGTTGT+TGG | - | chr4.1:16474490-16474509 | MS.gene08316:intron | 40.0% |
| ! | GCATTTTCTTGCCATCTTTG+AGG | + | chr4.1:16474645-16474664 | None:intergenic | 40.0% |
| ! | GCTGCATTCCTTTTAAGCAT+TGG | + | chr4.1:16474609-16474628 | None:intergenic | 40.0% |
| ! | TATCACATTGATAGCAGGAG+GGG | - | chr4.1:16475554-16475573 | MS.gene08316:intron | 40.0% |
| ! | TTTGGAGTCACAACTTTGCA+AGG | - | chr4.1:16475500-16475519 | MS.gene08316:intron | 40.0% |
| !! | CATAGACATTTGGTTCTCTG+AGG | + | chr4.1:16473375-16473394 | None:intergenic | 40.0% |
| !! | GTTGTTTTCATGTGACTGGA+AGG | - | chr4.1:16475599-16475618 | MS.gene08316:intron | 40.0% |
| !!! | CATTCCTTTTAAGCATTGGC+AGG | + | chr4.1:16474605-16474624 | None:intergenic | 40.0% |
| !!! | GTTTTGAGAAACAACATCGG+CGG | - | chr4.1:16476437-16476456 | MS.gene08316:CDS | 40.0% |
| !!! | TTCCATGCTTCTGTTTTGGT+TGG | + | chr4.1:16473272-16473291 | None:intergenic | 40.0% |
| AGGATTGAGGGTGATAGGTT+AGG | - | chr4.1:16474071-16474090 | MS.gene08316:intron | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr4.1:16475675-16475694 | MS.gene08316:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr4.1:16475672-16475691 | MS.gene08316:intron | 45.0% | |
| TACACTGGAACATCTGACAC+TGG | - | chr4.1:16474149-16474168 | MS.gene08316:intron | 45.0% | |
| TCATGTCTCATGGCTTACCA+TGG | - | chr4.1:16476348-16476367 | MS.gene08316:CDS | 45.0% | |
| TGAAGCTGTTGAATCATGGG+AGG | - | chr4.1:16476390-16476409 | MS.gene08316:CDS | 45.0% | |
| TGAGGATGAGGGGTTAGATT+AGG | - | chr4.1:16474458-16474477 | MS.gene08316:intron | 45.0% | |
| TGGCAAGAAAATGCTGCTGA+TGG | - | chr4.1:16474651-16474670 | MS.gene08316:intron | 45.0% | |
| TTCATGTGACTGGAAGGTCA+CGG | - | chr4.1:16475605-16475624 | MS.gene08316:intron | 45.0% | |
| ! | CCAGCATATCAAAGGCACAA+CGG | + | chr4.1:16474380-16474399 | None:intergenic | 45.0% |
| ! | GTGCTTCCATGCTTCTGTTT+TGG | + | chr4.1:16473276-16473295 | None:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr4.1:16475639-16475658 | None:intergenic | 45.0% |
| !! | ACATTTGGTTCTCTGAGGGA+AGG | + | chr4.1:16473370-16473389 | None:intergenic | 45.0% |
| !! | CTTTCGTGGTAGTTTGCTGA+TGG | - | chr4.1:16475854-16475873 | MS.gene08316:intron | 45.0% |
| !! | TGAAGTACTGGGACATACAC+TGG | - | chr4.1:16474134-16474153 | MS.gene08316:intron | 45.0% |
| !!! | TTTTTTTTTTTTTTTATCTT+TGG | - | chr4.1:16475435-16475454 | MS.gene08316:intron | 5.0% |
| AGTCTGTCTTGCTCCTATGG+CGG | + | chr4.1:16476150-16476169 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr4.1:16475583-16475602 | None:intergenic | 50.0% | |
| CCGTTGTGCCTTTGATATGC+TGG | - | chr4.1:16474377-16474396 | MS.gene08316:intron | 50.0% | |
| GAGTGGAGCTACAAGCGAAA+TGG | - | chr4.1:16474576-16474595 | MS.gene08316:intron | 50.0% | |
| GCATCTGTTGTTGGACCTCT+TGG | - | chr4.1:16474499-16474518 | MS.gene08316:intron | 50.0% | |
| GGAGGTCAAAGATAACCACG+AGG | - | chr4.1:16476121-16476140 | MS.gene08316:intron | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | - | chr4.1:16475606-16475625 | MS.gene08316:intron | 50.0% | |
| AAGGACCAGGGAGCTTAACG+TGG | + | chr4.1:16473351-16473370 | None:intergenic | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr4.1:16475618-16475637 | MS.gene08316:intron | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr4.1:16475716-16475735 | None:intergenic | 55.0% | |
| AGGACCAGGGAGCTTAACGT+GGG | + | chr4.1:16473350-16473369 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr4.1:16475715-16475734 | None:intergenic | 55.0% | |
| GATAGCAGGAGGGGTAACCT+TGG | - | chr4.1:16475563-16475582 | MS.gene08316:intron | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr4.1:16475720-16475739 | MS.gene08316:intron | 55.0% |
| ! | GTTCTCTGAGGGAAGGACCA+GGG | + | chr4.1:16473363-16473382 | None:intergenic | 55.0% |
| AACCACGAGGAAGCCGCCAT+AGG | - | chr4.1:16476134-16476153 | MS.gene08316:intron | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr4.1:16475572-16475591 | MS.gene08316:intron | 60.0% | |
| GGTACCCACGTTAAGCTCCC+TGG | - | chr4.1:16473343-16473362 | MS.gene08316:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr4.1:16475688-16475707 | MS.gene08316:intron | 60.0% |
| ! | GGTTCTCTGAGGGAAGGACC+AGG | + | chr4.1:16473364-16473383 | None:intergenic | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr4.1:16475721-16475740 | MS.gene08316:intron | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr4.1:16475703-16475722 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr4.1:16475690-16475709 | None:intergenic | 65.0% | |
| CTCCTATGGCGGCTTCCTCG+TGG | + | chr4.1:16476139-16476158 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr4.1:16475703-16475722 | MS.gene08316:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr4.1:16475704-16475723 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr4.1:16475704-16475723 | MS.gene08316:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr4.1:16475705-16475724 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr4.1:16475709-16475728 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr4.1:16475710-16475729 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 16473238 | 16476489 | 16473238 | ID=MS.gene08316 |
| chr4.1 | mRNA | 16473238 | 16476489 | 16473238 | ID=MS.gene08316.t1;Parent=MS.gene08316 |
| chr4.1 | exon | 16476275 | 16476489 | 16476275 | ID=MS.gene08316.t1.exon1;Parent=MS.gene08316.t1 |
| chr4.1 | CDS | 16476275 | 16476489 | 16476275 | ID=cds.MS.gene08316.t1;Parent=MS.gene08316.t1 |
| chr4.1 | exon | 16474998 | 16475143 | 16474998 | ID=MS.gene08316.t1.exon2;Parent=MS.gene08316.t1 |
| chr4.1 | CDS | 16474998 | 16475143 | 16474998 | ID=cds.MS.gene08316.t1;Parent=MS.gene08316.t1 |
| chr4.1 | exon | 16473540 | 16473658 | 16473540 | ID=MS.gene08316.t1.exon3;Parent=MS.gene08316.t1 |
| chr4.1 | CDS | 16473540 | 16473658 | 16473540 | ID=cds.MS.gene08316.t1;Parent=MS.gene08316.t1 |
| chr4.1 | exon | 16473238 | 16473339 | 16473238 | ID=MS.gene08316.t1.exon4;Parent=MS.gene08316.t1 |
| chr4.1 | CDS | 16473238 | 16473339 | 16473238 | ID=cds.MS.gene08316.t1;Parent=MS.gene08316.t1 |
| Gene Sequence |
| Protein sequence |
