AlfalfaGEDB | MS.gene047316

M. sativa cultivar XinJiangDaYe / MS.gene047316

KEGG: K14403
GO: -
PFAM: PF07521.15 PF10996.11 PF11718.11 PF16661.8

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047316.t1	XP_003592965.1	98.6	586	8	0	1	586	105	690	0.00E+00	1141.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047316.t1	Q9C952	82.1	588	102	2	1	585	105	692	9.6e-282	970.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047316.t1	G7IPE5	98.6	586	8	0	1	586	105	690	0.0e+00	1141.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene016615	MS.gene047316	PPI
MS.gene017174	MS.gene047316	PPI
MS.gene035826	MS.gene047316	PPI
MS.gene035828	MS.gene047316	PPI
MS.gene039360	MS.gene047316	PPI
MS.gene040651	MS.gene047316	PPI
MS.gene043593	MS.gene047316	PPI
MS.gene043643	MS.gene047316	PPI
MS.gene043645	MS.gene047316	PPI
MS.gene047316	MS.gene28304	PPI

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047316.t1	MTR_2g006180	98.635	586	8	0	1	586	105	690	0.0	1202
MS.gene047316.t1	MTR_1g032500	36.000	350	206	8	1	340	91	432	6.01e-63	216
MS.gene047316.t1	MTR_1g032500	37.134	307	175	8	1	297	91	389	1.83e-54	191
MS.gene047316.t1	MTR_1g050492	30.903	288	181	9	3	275	85	369	1.14e-30	127
MS.gene047316.t1	MTR_2g015350	52.703	74	34	1	479	551	1	74	3.87e-14	69.7

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene047316.t1	AT1G61010	82.143	588	102	2	1	585	105	692	0.0	1019
MS.gene047316.t1	AT1G61010	82.143	588	102	2	1	585	105	692	0.0	1019
MS.gene047316.t1	AT1G61010	82.143	588	102	2	1	585	105	692	0.0	1019
MS.gene047316.t1	AT1G61010	82.143	588	102	2	1	585	105	692	0.0	1019
MS.gene047316.t1	AT1G61010	82.143	588	102	2	1	585	105	692	0.0	1019
MS.gene047316.t1	AT2G01730	35.246	366	214	10	1	355	22	375	5.21e-63	217
MS.gene047316.t1	AT2G01730	35.054	368	216	10	1	357	91	446	3.85e-62	216
MS.gene047316.t1	AT5G23880	28.472	288	189	9	3	275	85	370	4.75e-28	119

Showing 1 to 8 of 8 entries

Previous1Next

Find 122 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGTGAGAACTGCATTC+CGG	0.444582	2.3:+75786292	MS.gene047316:CDS
AAAGGCGCCTGAATAAGGGA+TGG	0.674912	2.3:-75785848	None:intergenic
AACCATCCTCAATGAACCAA+AGG	0.568691	2.3:+75785405	MS.gene047316:CDS
AACCCACTCTGAAGTCCACC+AGG	0.518234	2.3:-75785295	None:intergenic
AAGAACTACGGCGCAGAAAG+AGG	0.539665	2.3:-75786342	None:intergenic
AAGAGGAGAAGCATAATAGA+TGG	0.446145	2.3:-75785116	None:intergenic
AAGCTGATAATTAACATTGA+TGG	0.466063	2.3:+75786207	MS.gene047316:CDS
AAGGAAGTTACTCTGATGAA+TGG	0.534388	2.3:+75785424	MS.gene047316:CDS
AAGTGAATGGTATCAGATTC+TGG	0.403220	2.3:+75784750	MS.gene047316:CDS
AATCCTGTCATTCATTGAAA+GGG	0.519239	2.3:-75785173	None:intergenic

Showing 1 to 10 of 122 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATCCTGTCATTCATTGAAA+GGG	-	chr2.3:75785176-75785195	None:intergenic	30.0%
AATGTTAAGGTTGGAGAAAA+TGG	+	chr2.3:75786183-75786202	MS.gene047316:CDS	30.0%
AGAAAATGGCAAAAACCATT+GGG	+	chr2.3:75785683-75785702	MS.gene047316:CDS	30.0%
AGTTATTACTGATATTGCTG+CGG	+	chr2.3:75784002-75784021	MS.gene047316:intron	30.0%
ATGTTAAGGTTGGAGAAAAT+GGG	+	chr2.3:75786184-75786203	MS.gene047316:CDS	30.0%
ATTCATTCAACCATATCTCA+AGG	+	chr2.3:75784992-75785011	MS.gene047316:CDS	30.0%
ATTCTATAATGCAGACATCA+GGG	-	chr2.3:75784910-75784929	None:intergenic	30.0%
ATTTGCCTTTAAGCACATAT+CGG	+	chr2.3:75785216-75785235	MS.gene047316:CDS	30.0%
CATAATAGATGGGTATATTC+TGG	-	chr2.3:75785108-75785127	None:intergenic	30.0%
GACATAAGATAAATTGTTGC+AGG	-	chr2.3:75784371-75784390	None:intergenic	30.0%

Showing 1 to 10 of 225 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	75782867	75786359	75782867	ID=MS.gene047316
chr2.3	mRNA	75782867	75786359	75782867	ID=MS.gene047316.t1;Parent=MS.gene047316
chr2.3	exon	75782867	75782992	75782867	ID=MS.gene047316.t1.exon1;Parent=MS.gene047316.t1
chr2.3	CDS	75782867	75782992	75782867	ID=cds.MS.gene047316.t1;Parent=MS.gene047316.t1
chr2.3	exon	75784725	75786359	75784725	ID=MS.gene047316.t1.exon2;Parent=MS.gene047316.t1
chr2.3	CDS	75784725	75786359	75784725	ID=cds.MS.gene047316.t1;Parent=MS.gene047316.t1

Gene Sequence

>MS.gene047316

ATGACCTATGCGACGAAAGCTATTTATAAGCTTCTTTTGTCTGATTATGTTAAAGTCAGTAAGGTTTCTGTTGATGATATGCTTTATGATGAACAAGATATTAATCGCTCCATGGATAAAATTGAGGTTAGCTTCTTTATTGCGTTAATGTGTGTGTATATTTTATATTATGATTTATCAGTTAATTATGTTTCTGGGAAATTTTGGTTTTGATTTTCAATTTATGGAATACAGGGTTTTATTTTGTTATTAGACATGTTATTATGATAATGTGTATGTTGTTTTAGCCTCTAAACTTTAATTAAGTGTATGTTTGGTTATGCAGTGCTAAAAATTGATTTTTAGTGAATAGATTCTGGCTAAATTGAGTTGAAAGTAAAGTGATTTATGTTTGAATGTTTTTATGTAAATGTGAGTTGAGCAATAAATTTGAGTGTAAGAATTAGAAGCTACGATCTCTAGCTTCAAGTTGAATCAATTCTGGAGCCAAAGTTAATTCTACTTTAGAGGAACCAAACATGTCAAAACCAGTTTTATACATCTAGACCCAATTATATACCTCTACAATTTCTGCAATGACTTTTTAGGGTTTTATTTTAAAATGCATCTTTTCTTTGGTGGTTATTTGTAATAGTCGTTCACTGTAATCATGGATAAATTTTTGAAACTTAAGCATAGTACATTTTAAAAGTTATCAATAACGAGTAATCATGGTTAATGATTTTTTGGGTAATGCATGTGAAAGACTGAAAGTAGTTATTGTAATCTCTGTTAAAATACACAGGTAAGATTTTGTATGTTTTGTTTTTTAGCTTCTAAGTTTGAATATAAGTATGTGTTAACAGTAGTACTAGTTGGTGACTGCAAGTTCCTACTACGAATCACATAGCTAATATGTATAATATAAGGCAGGAATCAGCTGCTACAAATATAATACATTGATCAATAGAAACGTGTAAAATATACGGGCATGAGTTATGAGATTGGTTTTAAAATTATGTTTAGTCCATCTTATATTATGTAATTTTTCATTATTTTTTTGTATATTAAACAAGTACCTAACCAGAGTGAGTTGCGGTGATGATAGTGTTGCATTTATAGAGACAGAATCTAAGTGCAAACCTTACAGAAATACAGTTATTACTGATATTGCTGCGGACATGTAATGTGTTGCGTCAGAATTATTATTAAGTACTGTGAAATGTTTATGCTGTGGTGTTCCCCCCCCCCCAGTGATATGCAAATATGCAGTGAGATATACGCATGTTGCTCCTCAAATTGCCAAATGTGAATAAAGTGCATCGAGAATCTAGAAAATGATCATTGTAGAAGAGACAATGACACATATACTTGTAGCGTTTTTGGCGTGGAGATAGGCTTGAATGAGCTGTAAAAAGCTTAAATTATCACAACAATGACTAAATTATTTATTACACTGTGTTACAATAAAGACATAAACTTTTATGGTTCAATATGTCTTCTCCTGTATAAAGTCCTACAACCTGCAACAATTTATCTTATGTCTCTTTATTACCTTTTCCAGAATTGCAACGGATAAATCAAATGTTCTGCAATTTCTTTCTGTTATACTTCTTCTACATGTTTCTAATTCTCATGTAGCTCCATCAAGCGAGTGCATTCATGTAACTTTCCTTCATTGTCTGAAAAACCACACAACTCCACAATATCAAGTGTTCAACAATCTATTCCCAAACCAATGCATCATACACAGTTTTCTTCAATTGCCGTTGAATTTAGGGTTTATTTTAGTTTGGAACAATAATTATTGTAATGTCTATGTTTTTCGGCTCTTAATTTGAATGTACATGTTAACAGTAGTAGTAATTGGTGACCGCAGGTTATTGATTTCCATCAAACGGTTGAAGTGAATGGTATCAGATTCTGGTGTTACACTGCAGGCCATGTCCTTGGTGCTGCTATGTTTATGGTTGACATTGCTGGTGTTCGAGTGCTGTATACAGGAGACTATTCACGCGAGGAAGACAGACATCTTCGAGCTGCAGAGACCCCACAGTTCTCCCCTGATGTCTGCATTATAGAATCCACCTATGGTGTACAACACCATCAGCCTCGGCACACCCGAGAAAAACGCTTTACTGATGTTATTCATTCAACCATATCTCAAGGAGGCCGTGTGTTGATTCCAGCTTATGCCCTCGGTCGTGCGCAAGAGCTACTGTTGATCCTTGATGAGTATTGGGCAAATCATCCAGAGCTCCAGAATATACCCATCTATTATGCTTCTCCTCTTGCAAAAAAATGTTTGACTGTTTACGAGACCTACACCCTTTCAATGAATGACAGGATTCAGAATGCAAAGTCAAATCCATTTGCCTTTAAGCACATATCGGCTTTGAGTAGCATTGACATTTTCAAAGACGTAGGACCATCTGTGGTGATGGCGAGCCCTGGTGGACTTCAGAGTGGGTTGTCGCGACAATTATTTGATATGTGGTGCGCTGACAAGAAAAATTCTTGTGTTATACCTGGATATGTTGTTGAGGGGACACTGGCAAAAACCATCCTCAATGAACCAAAGGAAGTTACTCTGATGAATGGACTCTCTGCAACTCTCAACATGCAGGTGCACTACATTTCCTTTTCTGCTCATGCTGACTCTGCTCAAACAAGCGCGTTCTTGGAAGAGCTCAATCCGCCTAACATAATTCTTGTCCACGGGGCTGCTAATGAAATGGGGAGGCTCAAGCAGAAGCTCATGACTCAGTTTGCTGATCGTAACACCAAGATCCTCACTCCAAAAAACTGCCAGTCTGTTGAAATGTATTTTAATTCACAGAAAATGGCAAAAACCATTGGGAAGCTGGCTGAAAAAACACCGGAAGTGGGTGAAACCGTTAGTGGTTTGCTAGTTAAAAAAGGTTTTACGTATCAAATAATGGCACCAGATGATCTCCATGTCTTCTCACAGCTATCAACGGCAAATGTCACTCAGAGAATTACCATCCCTTATTCAGGCGCCTTTTGTGTCATACAGAGTAGACTCAAACAGATATATGAGAGTGTGGAGCCGTCAGTCGATGAAGAATCTGGAGTTCCAACGTTGCTAGTTCATGATCGTGTAACAGTTAAGCATGAGTCTGAGAAGTATGTCTCCTTGCATTGGGCGTCAGACCCCATTAGTGACATGGTATCAGATTCAGTTGTTGCTCTAGTTTTAAATATCAACCGTGACCTCCCAAAAATAGTGGCTGAATCAGATGCCGTAAAAATTGAGGAAGAGAATGAGAAGAAGACAGAGAAGGTTATGCATGCCCTTCTCAATTCACTCTTTGGAAATGTTAAGGTTGGAGAAAATGGGAAGCTGATAATTAACATTGATGGCAATGTGGCAGAACTCAACAAAGAAAGTGGTGAAGTTGAGAGTGAAAATGAAGGCCTTAAAGAAAGAGTGAGAACTGCATTCCGGCGTATTCAAAGTTCTGTGAAGCCAATTCCTCTTTCTGCGCCGTAG

Protein sequence

>MS.gene047316.t1

MTYATKAIYKLLLSDYVKVSKVSVDDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRIQNAKSNPFAFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCADKKNSCVIPGYVVEGTLAKTILNEPKEVTLMNGLSATLNMQVHYISFSAHADSAQTSAFLEELNPPNIILVHGAANEMGRLKQKLMTQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYSGAFCVIQSRLKQIYESVEPSVDEESGVPTLLVHDRVTVKHESEKYVSLHWASDPISDMVSDSVVALVLNINRDLPKIVAESDAVKIEEENEKKTEKVMHALLNSLFGNVKVGENGKLIINIDGNVAELNKESGEVESENEGLKERVRTAFRRIQSSVKPIPLSAP