Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08397.t1 | RHN42280.1 | 97.9 | 1187 | 24 | 1 | 1 | 1187 | 1 | 1186 | 0.00E+00 | 2346.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08397.t1 | Q9LK40 | 68.0 | 1193 | 337 | 15 | 17 | 1187 | 3 | 1172 | 0.0e+00 | 1615.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08397.t1 | A0A396GML5 | 97.9 | 1187 | 24 | 1 | 1 | 1187 | 1 | 1186 | 0.0e+00 | 2346.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene08397 | MS.gene014907 | PPI |
MS.gene08397 | MS.gene27287 | PPI |
MS.gene08397 | MS.gene023227 | PPI |
MS.gene08397 | MS.gene023462 | PPI |
MS.gene08397 | MS.gene42606 | PPI |
MS.gene014907 | MS.gene08397 | PPI |
MS.gene08397 | MS.gene32699 | PPI |
MS.gene08397 | MS.gene80189 | PPI |
MS.gene08397 | MS.gene27025 | PPI |
MS.gene08397 | MS.gene09000 | PPI |
MS.gene08397 | MS.gene80187 | PPI |
MS.gene08397 | MS.gene08846 | PPI |
MS.gene023227 | MS.gene08397 | PPI |
MS.gene08397 | MS.gene42607 | PPI |
MS.gene08397 | MS.gene35217 | PPI |
MS.gene08397 | MS.gene09247 | PPI |
MS.gene08397 | MS.gene32700 | PPI |
MS.gene08397 | MS.gene90747 | PPI |
MS.gene35217 | MS.gene08397 | PPI |
MS.gene08397 | MS.gene24205 | PPI |
MS.gene08397 | MS.gene028236 | PPI |
MS.gene028236 | MS.gene08397 | PPI |
MS.gene08397 | MS.gene42612 | PPI |
MS.gene80189 | MS.gene08397 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08397.t1 | MTR_3g105990 | 96.209 | 1187 | 43 | 2 | 3 | 1187 | 2 | 1188 | 0.0 | 2376 |
MS.gene08397.t1 | MTR_0189s0050 | 96.718 | 518 | 16 | 1 | 1 | 518 | 1 | 517 | 0.0 | 1041 |
MS.gene08397.t1 | MTR_1g023500 | 35.004 | 1197 | 665 | 29 | 52 | 1185 | 36 | 1182 | 0.0 | 666 |
MS.gene08397.t1 | MTR_8g023445 | 30.000 | 1190 | 694 | 31 | 52 | 1185 | 894 | 2000 | 7.60e-139 | 465 |
MS.gene08397.t1 | MTR_4g124030 | 26.559 | 1235 | 712 | 45 | 58 | 1183 | 31 | 1179 | 3.95e-95 | 331 |
MS.gene08397.t1 | MTR_0002s0510 | 25.592 | 422 | 267 | 8 | 737 | 1116 | 653 | 1069 | 2.82e-30 | 131 |
MS.gene08397.t1 | MTR_4g051130 | 25.442 | 452 | 264 | 12 | 773 | 1180 | 618 | 1040 | 1.53e-28 | 125 |
MS.gene08397.t1 | MTR_1g022135 | 24.825 | 286 | 141 | 12 | 132 | 401 | 11 | 238 | 1.89e-13 | 73.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene08397.t1 | AT3G23780 | 67.980 | 1193 | 337 | 15 | 17 | 1187 | 3 | 1172 | 0.0 | 1637 |
MS.gene08397.t1 | AT3G23780 | 67.980 | 1193 | 337 | 15 | 17 | 1187 | 3 | 1172 | 0.0 | 1637 |
MS.gene08397.t1 | AT3G18090 | 69.123 | 1072 | 293 | 11 | 135 | 1187 | 3 | 1055 | 0.0 | 1513 |
MS.gene08397.t1 | AT3G18090 | 66.337 | 909 | 268 | 11 | 135 | 1024 | 3 | 892 | 0.0 | 1217 |
MS.gene08397.t1 | AT3G18090 | 66.446 | 906 | 266 | 11 | 135 | 1021 | 3 | 889 | 0.0 | 1216 |
MS.gene08397.t1 | AT4G21710 | 34.500 | 1229 | 692 | 29 | 20 | 1185 | 1 | 1179 | 0.0 | 659 |
MS.gene08397.t1 | AT5G45140 | 31.208 | 1192 | 677 | 36 | 52 | 1178 | 39 | 1152 | 9.99e-150 | 480 |
MS.gene08397.t1 | AT5G45140 | 31.208 | 1192 | 677 | 36 | 52 | 1178 | 39 | 1152 | 9.99e-150 | 480 |
MS.gene08397.t1 | AT1G29940 | 25.622 | 1245 | 722 | 39 | 52 | 1183 | 16 | 1169 | 4.64e-90 | 316 |
MS.gene08397.t1 | AT5G45140 | 29.218 | 818 | 470 | 28 | 52 | 826 | 39 | 790 | 2.23e-75 | 268 |
MS.gene08397.t1 | ATCG00190 | 25.161 | 465 | 289 | 13 | 715 | 1134 | 577 | 1027 | 1.58e-27 | 121 |
Find 302 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTGAAGACATTGTTAATTT+TGG | 0.068206 | 4.1:-17547856 | MS.gene08397:CDS |
AAAGCATCGACTCTTATATT+TGG | 0.162091 | 4.1:+17548162 | None:intergenic |
TTGAACATCAACTTTCATTT+TGG | 0.208141 | 4.1:+17552505 | None:intergenic |
AAAGACAAAGTCTTCCTAAA+TGG | 0.218088 | 4.1:-17549508 | MS.gene08397:CDS |
AAATAGGATGGTTGTTAAAT+TGG | 0.238146 | 4.1:-17551138 | MS.gene08397:CDS |
GGTGCGATCACTAATATTTA+TGG | 0.247178 | 4.1:-17545758 | MS.gene08397:CDS |
CCAAAGTCTGAATTCTATAA+TGG | 0.247666 | 4.1:-17548042 | MS.gene08397:CDS |
CAATATGCCACGGTTAAGTT+TGG | 0.252447 | 4.1:-17552632 | MS.gene08397:CDS |
TTGAAGTCCTCTTCTTCTTC+AGG | 0.252661 | 4.1:+17548384 | None:intergenic |
AGTAATCTGCTCAAGATTAA+AGG | 0.253696 | 4.1:-17548471 | MS.gene08397:CDS |
TTGGAGACCATTTGTAATAA+TGG | 0.265166 | 4.1:+17550539 | None:intergenic |
TATGTCTTTCCGAACATTAA+AGG | 0.270375 | 4.1:-17550807 | MS.gene08397:CDS |
GCATGGACAGAAGGGTGTTT+TGG | 0.277868 | 4.1:-17547139 | MS.gene08397:CDS |
GCCGAGTTCGTTGAGGATTT+CGG | 0.279917 | 4.1:+17552847 | None:intergenic |
ACTTGATATGTCGTTCTTAT+TGG | 0.284151 | 4.1:-17548292 | MS.gene08397:CDS |
GAAAGTTGATGTTCAACTTC+AGG | 0.293979 | 4.1:-17552498 | MS.gene08397:intron |
TGGCCTGAGAAGAATGCTTC+TGG | 0.296378 | 4.1:+17548205 | None:intergenic |
CTTGATATGTCGTTCTTATT+GGG | 0.297883 | 4.1:-17548291 | MS.gene08397:CDS |
CAAAGCTGAAATTGAGAATA+AGG | 0.300709 | 4.1:-17547902 | MS.gene08397:CDS |
TTCTTAGAGGAACGTGTAAA+AGG | 0.305968 | 4.1:-17550876 | MS.gene08397:CDS |
CTCCAGTAGAAAACGCTCTT+TGG | 0.308318 | 4.1:+17550520 | None:intergenic |
AGAAGTGATGAATTGATTAT+AGG | 0.315125 | 4.1:+17552742 | None:intergenic |
GCTCTGCAGAGAGACCTTTA+TGG | 0.316497 | 4.1:-17550603 | MS.gene08397:CDS |
TTCCAGTCCCTATTGGATTA+TGG | 0.316905 | 4.1:-17548426 | MS.gene08397:CDS |
TGATGATACTATGACCGTTC+TGG | 0.319004 | 4.1:-17549536 | MS.gene08397:CDS |
CCAAAATTAACAATGTCTTC+AGG | 0.325956 | 4.1:+17547856 | None:intergenic |
TGGTCAAGTCTGATCTTTGC+TGG | 0.326694 | 4.1:-17551850 | MS.gene08397:CDS |
GGTTTCAAATATTCCGTATT+GGG | 0.328046 | 4.1:-17551189 | MS.gene08397:CDS |
TAAATCTTTCCAGTCCCTAT+TGG | 0.328315 | 4.1:-17548433 | MS.gene08397:CDS |
GGAAAGATAGAGAGTAAAAT+TGG | 0.330169 | 4.1:-17547835 | MS.gene08397:CDS |
TGAGTTGGCTGGTGAGCTGC+TGG | 0.335127 | 4.1:-17550676 | MS.gene08397:CDS |
TCATCAACACCTTTCTTAGA+AGG | 0.335400 | 4.1:+17552662 | None:intergenic |
CAGGTTAGAAGCCCAGTTCT+TGG | 0.335580 | 4.1:-17547180 | MS.gene08397:CDS |
GTTTCCACCCGCAGAATCTA+TGG | 0.335619 | 4.1:-17550847 | MS.gene08397:CDS |
CGATTTGGAGGTATCAAGTT+TGG | 0.336084 | 4.1:-17545628 | MS.gene08397:CDS |
AGTCACAGATGAAGAGAAAT+AGG | 0.340801 | 4.1:-17551154 | MS.gene08397:CDS |
TATAATCAATTCATCACTTC+TGG | 0.341794 | 4.1:-17552740 | MS.gene08397:CDS |
TGTGCTTTAGCTTTATACTA+TGG | 0.343766 | 4.1:+17547713 | None:intergenic |
AGATCAGACTTGACCATAAC+AGG | 0.353811 | 4.1:+17551857 | None:intergenic |
TGTGGATTTATAACAATATC+AGG | 0.355965 | 4.1:+17547066 | None:intergenic |
CAACGAACTCGGCGAAGATA+TGG | 0.356205 | 4.1:-17552837 | MS.gene08397:CDS |
AAGCATCGACTCTTATATTT+GGG | 0.358815 | 4.1:+17548163 | None:intergenic |
CCTGAATTTGACTTTGTCTT+CGG | 0.358897 | 4.1:+17545702 | None:intergenic |
CTCCAACCCAGTCCCCATTT+AGG | 0.359540 | 4.1:+17549494 | None:intergenic |
CGCTTGATCGACCTATGTTT+TGG | 0.361100 | 4.1:-17552601 | MS.gene08397:CDS |
GATGATGGCTTTCCATTTGT+TGG | 0.362742 | 4.1:-17547793 | MS.gene08397:CDS |
CAAACTTAACCGTGGCATAT+TGG | 0.364361 | 4.1:+17552633 | None:intergenic |
TATTGGTAGATTGCCTGTTA+TGG | 0.365823 | 4.1:-17551870 | MS.gene08397:CDS |
ATCGGGCGGTGTGCTGATTC+CGG | 0.370475 | 4.1:-17547742 | MS.gene08397:CDS |
TTCCTCAGCTGTTTGATTGT+GGG | 0.376159 | 4.1:-17549573 | MS.gene08397:CDS |
TGCAAATTTGCTCCAACAAA+TGG | 0.377429 | 4.1:+17547781 | None:intergenic |
CCATTACCGACCAGCTTCAT+AGG | 0.377816 | 4.1:-17546927 | MS.gene08397:intron |
CAATCACGCCATAATCCAAT+AGG | 0.378016 | 4.1:+17548418 | None:intergenic |
GCGACAGGCTGTCGGGTCAA+TGG | 0.380744 | 4.1:+17545661 | None:intergenic |
AGGTATTTCTGAAGAGGCTC+TGG | 0.381603 | 4.1:-17551211 | MS.gene08397:CDS |
TCTGGTGTAGTTGCAACTCT+TGG | 0.381884 | 4.1:-17550462 | MS.gene08397:CDS |
GAGAACTTATCTCCAAGAAC+TGG | 0.386193 | 4.1:+17547168 | None:intergenic |
CCGAAGACAAAGTCAAATTC+AGG | 0.388621 | 4.1:-17545702 | MS.gene08397:CDS |
TGTTCAGATCTGAGCATATA+AGG | 0.389042 | 4.1:-17547930 | MS.gene08397:CDS |
AAGACAAAGTCTTCCTAAAT+GGG | 0.391964 | 4.1:-17549507 | MS.gene08397:CDS |
CTGATGCACCGTGAGCTATC+AGG | 0.392438 | 4.1:+17545587 | None:intergenic |
GACAACAACTTTGCTCCATA+TGG | 0.393361 | 4.1:+17545391 | None:intergenic |
GTGATCTTGCGACCGGTATC+TGG | 0.396475 | 4.1:-17545484 | MS.gene08397:CDS |
GTCGCTGACAGGAAGCGATT+TGG | 0.397585 | 4.1:-17545643 | MS.gene08397:CDS |
AGGTATCAAGTTTGGTGAAA+TGG | 0.397863 | 4.1:-17545620 | MS.gene08397:CDS |
TTATCACTCCGAACCTTCTT+CGG | 0.400038 | 4.1:+17551959 | None:intergenic |
ACCCTTCTGTCCATGCATAC+TGG | 0.403623 | 4.1:+17547146 | None:intergenic |
TGGGGTGTTCAGTATTTGTT+TGG | 0.404123 | 4.1:-17548354 | MS.gene08397:CDS |
AAAAGGATGGAAAGGATATC+TGG | 0.404544 | 4.1:-17550480 | MS.gene08397:CDS |
ATTGATTATAGGAGTTGATT+TGG | 0.407015 | 4.1:+17552753 | None:intergenic |
GGGTTTCAAATATTCCGTAT+TGG | 0.410124 | 4.1:-17551190 | MS.gene08397:CDS |
GATGATACTATGACCGTTCT+GGG | 0.412400 | 4.1:-17549535 | MS.gene08397:CDS |
CGGAGTGATAAGTTTAAGAC+TGG | 0.412464 | 4.1:-17551947 | MS.gene08397:CDS |
AGAGGACTTCAAGACTGCTT+GGG | 0.413762 | 4.1:-17548373 | MS.gene08397:CDS |
CAAAGTCTGAATTCTATAAT+GGG | 0.419058 | 4.1:-17548041 | MS.gene08397:CDS |
CTTCCTCAGCTGTTTGATTG+TGG | 0.425534 | 4.1:-17549574 | MS.gene08397:CDS |
GTTGCAGGCATCCTTCTCAC+TGG | 0.426530 | 4.1:-17549699 | MS.gene08397:intron |
CGCATTTATCGTCTGCCTCA+CGG | 0.426660 | 4.1:+17550931 | None:intergenic |
TCCTGTCAGCGACAGGCTGT+CGG | 0.428603 | 4.1:+17545653 | None:intergenic |
AAGGATTCTCCGTCCACTCT+TGG | 0.429803 | 4.1:-17548499 | MS.gene08397:CDS |
TTTCACCATCTGGGGTAGAA+AGG | 0.429958 | 4.1:+17549662 | None:intergenic |
CGACAGGCTGTCGGGTCAAT+GGG | 0.430294 | 4.1:+17545662 | None:intergenic |
CAATCCGCTTTCGATTCCTT+CGG | 0.431632 | 4.1:-17552713 | MS.gene08397:CDS |
GTTCTTCTACTAGCGTATAC+TGG | 0.433697 | 4.1:-17550744 | MS.gene08397:CDS |
GCATCCTTCTCACTGGGGTA+AGG | 0.434903 | 4.1:-17549692 | MS.gene08397:CDS |
GAGAAGAATGCTTCTGGGAT+TGG | 0.435150 | 4.1:+17548211 | None:intergenic |
ACAACTACTAGAGGCTGCTT+TGG | 0.435996 | 4.1:-17547016 | MS.gene08397:CDS |
GACGCTTCCATTATTACAAA+TGG | 0.436306 | 4.1:-17550546 | MS.gene08397:CDS |
AATATGCCACGGTTAAGTTT+GGG | 0.436673 | 4.1:-17552631 | MS.gene08397:CDS |
GTGCGATCACTAATATTTAT+GGG | 0.437084 | 4.1:-17545757 | MS.gene08397:CDS |
AATTCAGCCATGGTTTGTAA+TGG | 0.438058 | 4.1:+17550429 | None:intergenic |
TGCTGTTGTTTCGTTAAGAC+AGG | 0.440677 | 4.1:-17547632 | MS.gene08397:intron |
GAACATCTCGATCTCCATAA+AGG | 0.443290 | 4.1:+17550589 | None:intergenic |
TCAGGTATATGTTCCGAAGA+AGG | 0.446001 | 4.1:-17551972 | MS.gene08397:intron |
CCTTCTCAGCACCCTTGATC+AGG | 0.446573 | 4.1:+17551777 | None:intergenic |
ATTGTGGATCTCATCGATTA+TGG | 0.448219 | 4.1:-17550996 | MS.gene08397:CDS |
GGTGATCTCACTGTTACGCC+AGG | 0.455533 | 4.1:-17552692 | MS.gene08397:CDS |
CTCGGAAAACCTGGATATCT+AGG | 0.455828 | 4.1:-17548081 | MS.gene08397:CDS |
CGAAAGGGGTTATGTTCAAA+AGG | 0.455941 | 4.1:-17547689 | MS.gene08397:CDS |
TCGGGCGGTGTGCTGATTCC+GGG | 0.456470 | 4.1:-17547741 | MS.gene08397:CDS |
CAACTACTAGAGGCTGCTTT+GGG | 0.457722 | 4.1:-17547015 | MS.gene08397:CDS |
CCTGTCAGCGACAGGCTGTC+GGG | 0.459295 | 4.1:+17545654 | None:intergenic |
AGCCATGGTTTGTAATGGAT+TGG | 0.460916 | 4.1:+17550434 | None:intergenic |
CTAGAGGCTGCTTTGGGAAA+GGG | 0.461237 | 4.1:-17547009 | MS.gene08397:CDS |
TTCAGTACACAGGAAAGGTC+GGG | 0.465796 | 4.1:-17550386 | MS.gene08397:CDS |
AAGAGGACTTCAAGACTGCT+TGG | 0.469345 | 4.1:-17548374 | MS.gene08397:CDS |
CAGTATTTGTTTGGCAAAGA+GGG | 0.469527 | 4.1:-17548345 | MS.gene08397:CDS |
AAGCATTCTTCTCAGGCCAT+TGG | 0.470338 | 4.1:-17548201 | MS.gene08397:CDS |
TGTCGGGTCAATGGGTGAAC+TGG | 0.473461 | 4.1:+17545670 | None:intergenic |
CCTATGAAGCTGGTCGGTAA+TGG | 0.473583 | 4.1:+17546927 | None:intergenic |
TTTCCCTCACGACAAACTCC+TGG | 0.475136 | 4.1:-17547039 | MS.gene08397:CDS |
GGCCTGAGAAGAATGCTTCT+GGG | 0.475788 | 4.1:+17548206 | None:intergenic |
GAGAAATGAGTTGCCTCATC+AGG | 0.476514 | 4.1:-17549422 | MS.gene08397:intron |
GATATTTATTGCACAAGAGC+AGG | 0.477763 | 4.1:-17551231 | MS.gene08397:CDS |
TCCGATTGTCTCGGAAAACC+TGG | 0.478573 | 4.1:-17548090 | MS.gene08397:CDS |
GTCTCAGGAGCTGTTCAGCA+TGG | 0.478761 | 4.1:-17545371 | MS.gene08397:CDS |
TGGAGGCTACTTCCTGATCA+AGG | 0.479532 | 4.1:-17551789 | MS.gene08397:CDS |
GCAGACGCTGGTAGAATGTT+GGG | 0.481808 | 4.1:+17545734 | None:intergenic |
CCATTATAGAATTCAGACTT+TGG | 0.484719 | 4.1:+17548042 | None:intergenic |
TTACTCTGACCTAGATATCC+AGG | 0.485264 | 4.1:+17548072 | None:intergenic |
GCAGCCTCTAGTAGTTGTCC+AGG | 0.486041 | 4.1:+17547021 | None:intergenic |
AAGTCTTCCTAAATGGGGAC+TGG | 0.487711 | 4.1:-17549501 | MS.gene08397:CDS |
TTCACAATGTGTGTACTTCA+CGG | 0.488577 | 4.1:+17548314 | None:intergenic |
GTCTGAAAGAGTGGTCTTTG+TGG | 0.490054 | 4.1:+17548120 | None:intergenic |
TGTTTCCTTTCTACCCCAGA+TGG | 0.490279 | 4.1:-17549667 | MS.gene08397:CDS |
TGGATGAGTGAAGCTGAAAA+AGG | 0.492402 | 4.1:-17551830 | MS.gene08397:CDS |
CGCCATAATCCAATAGGGAC+TGG | 0.492490 | 4.1:+17548424 | None:intergenic |
TGGAGCAAAGTTGTTGTCTC+AGG | 0.492582 | 4.1:-17545386 | MS.gene08397:CDS |
CTGGTGTAGTTGCAACTCTT+GGG | 0.493357 | 4.1:-17550461 | MS.gene08397:CDS |
TAACAGCATCTACACAGAAA+TGG | 0.493360 | 4.1:-17552903 | MS.gene08397:CDS |
TGTTCTTCTTAATTCAGCCA+TGG | 0.493474 | 4.1:+17550419 | None:intergenic |
TAGGATGGTTGTTAAATTGG+TGG | 0.495089 | 4.1:-17551135 | MS.gene08397:CDS |
GGGTTTGATCCTTCTAAGAA+AGG | 0.495219 | 4.1:-17552671 | MS.gene08397:CDS |
GTAACAAGGGAAATAACTAT+TGG | 0.495414 | 4.1:-17551887 | MS.gene08397:CDS |
TTGCAGGCATCCTTCTCACT+GGG | 0.496735 | 4.1:-17549698 | MS.gene08397:intron |
AATCGCTTCCTGTCAGCGAC+AGG | 0.499397 | 4.1:+17545646 | None:intergenic |
ATCCCAGAAGCATTCTTCTC+AGG | 0.500790 | 4.1:-17548208 | MS.gene08397:CDS |
GGTCAATGGGTGAACTGGAC+CGG | 0.505931 | 4.1:+17545675 | None:intergenic |
GCGCATGCTCGGAAGCGAAT+GGG | 0.506782 | 4.1:-17550630 | MS.gene08397:CDS |
AATAAGAGGCTTGAGTTGGC+TGG | 0.507515 | 4.1:-17550687 | MS.gene08397:CDS |
CGAGTATACAACGGGAGGAC+CGG | 0.510416 | 4.1:-17545787 | MS.gene08397:CDS |
CCCGACAGCCTGTCGCTGAC+AGG | 0.511250 | 4.1:-17545654 | MS.gene08397:CDS |
CCTGATCAAGGGTGCTGAGA+AGG | 0.511307 | 4.1:-17551777 | MS.gene08397:intron |
GCATGGTCATGATTTGCAAA+TGG | 0.512791 | 4.1:+17548249 | None:intergenic |
TATATGTTCCGAAGAAGGTT+CGG | 0.514071 | 4.1:-17551967 | MS.gene08397:CDS |
TTGCAAATCATGACCATGCT+AGG | 0.514874 | 4.1:-17548245 | MS.gene08397:CDS |
TCGAAATAAGAGGCTTGAGT+TGG | 0.515093 | 4.1:-17550691 | MS.gene08397:CDS |
CTCCAGTATGCATGGACAGA+AGG | 0.515563 | 4.1:-17547148 | MS.gene08397:CDS |
TATGGCGTGATTGAGCTGAT+TGG | 0.516661 | 4.1:-17548408 | MS.gene08397:CDS |
TATTGATAGAGAGATAAAGT+TGG | 0.517236 | 4.1:-17551912 | MS.gene08397:CDS |
CATGGACACATCCTTTCAAA+AGG | 0.518074 | 4.1:-17550497 | MS.gene08397:CDS |
ACTAGAGGCTGCTTTGGGAA+AGG | 0.518204 | 4.1:-17547010 | MS.gene08397:CDS |
GACACATCCTTTCAAAAGGA+TGG | 0.521759 | 4.1:-17550493 | MS.gene08397:CDS |
AATGGCTTCAACAGAGGAAG+TGG | 0.521973 | 4.1:+17546945 | None:intergenic |
GTTGTGGCCAGTGTTCCATA+TGG | 0.522270 | 4.1:-17545406 | MS.gene08397:CDS |
GGAAAGGGCATCGCTTGTGT+TGG | 0.523598 | 4.1:-17546994 | MS.gene08397:CDS |
TGCAGACGCTGGTAGAATGT+TGG | 0.525149 | 4.1:+17545733 | None:intergenic |
ATCAAACAGCTGAGGAAGTA+CGG | 0.526202 | 4.1:+17549579 | None:intergenic |
AGATAAAGTTGGATGTAACA+AGG | 0.526319 | 4.1:-17551901 | MS.gene08397:CDS |
AAGTGCACTTTGCGCATGCT+CGG | 0.527063 | 4.1:-17550641 | MS.gene08397:CDS |
ATATAATCAAGAAGATTCCT+TGG | 0.528881 | 4.1:-17547983 | MS.gene08397:CDS |
AAAGCTAAAGCACACCGAAA+GGG | 0.531794 | 4.1:-17547704 | MS.gene08397:CDS |
TGCGCATGCTCGGAAGCGAA+TGG | 0.532402 | 4.1:-17550631 | MS.gene08397:CDS |
TCAACAGAGGAAGTGGAGAA+AGG | 0.532899 | 4.1:+17546952 | None:intergenic |
TCTCAGGAGCTGTTCAGCAT+GGG | 0.533250 | 4.1:-17545370 | MS.gene08397:CDS |
CACTTCTGATAAAGAGATTG+TGG | 0.536535 | 4.1:-17551012 | MS.gene08397:CDS |
ATCCTTTCAAAAGGATGGAA+AGG | 0.537841 | 4.1:-17550488 | MS.gene08397:CDS |
ATCTTCCGTCCACCAGATAC+CGG | 0.538540 | 4.1:+17545472 | None:intergenic |
GGTATTTCTGAAGAGGCTCT+GGG | 0.538649 | 4.1:-17551210 | MS.gene08397:CDS |
AATCACGCCATAATCCAATA+GGG | 0.538659 | 4.1:+17548419 | None:intergenic |
CTCTGCAACCTAGCGTGTCT+AGG | 0.539892 | 4.1:+17552542 | None:intergenic |
GGAACGAACGAGTATACAAC+GGG | 0.539991 | 4.1:-17545795 | MS.gene08397:CDS |
GGCTAGGTACCTAGCTTACA+TGG | 0.542880 | 4.1:-17550772 | MS.gene08397:CDS |
GATTAAAAGCGAACCTGATG+AGG | 0.544004 | 4.1:+17549409 | None:intergenic |
TGTCTGTCGAGATACCTGTA+TGG | 0.544838 | 4.1:-17551058 | MS.gene08397:CDS |
TGCTCGGAAGCGAATGGGAA+AGG | 0.546238 | 4.1:-17550625 | MS.gene08397:CDS |
GTTGATAGCCTTGATGATGA+TGG | 0.547320 | 4.1:-17547808 | MS.gene08397:CDS |
ATGGTTGTTAAATTGGTGGA+AGG | 0.549390 | 4.1:-17551131 | MS.gene08397:CDS |
TTAACCGTGGCATATTGGTA+AGG | 0.551639 | 4.1:+17552638 | None:intergenic |
TTGAAAGCAACAGCCCAATA+CGG | 0.551751 | 4.1:+17551176 | None:intergenic |
CTTTATACTATGGTCCGTCC+CGG | 0.551918 | 4.1:+17547723 | None:intergenic |
CTTTGCTCCATATGGAACAC+TGG | 0.552473 | 4.1:+17545399 | None:intergenic |
CAACGGGAGGACCGGTGAGA+TGG | 0.554842 | 4.1:-17545779 | MS.gene08397:CDS |
TCCACGGAGGGAATTACAAA+CGG | 0.555312 | 4.1:-17551107 | MS.gene08397:CDS |
TGGAAGATTACCTATGAAGC+TGG | 0.555512 | 4.1:+17546917 | None:intergenic |
TTTATCGTCTGCCTCACGGA+TGG | 0.555913 | 4.1:+17550935 | None:intergenic |
GTCATGTTCTTCGATCAATA+CGG | 0.556617 | 4.1:-17552788 | MS.gene08397:CDS |
GAACCTTCACCATGTAAGCT+AGG | 0.558023 | 4.1:+17550763 | None:intergenic |
ATCGATTATGGAGAGGCAGA+TGG | 0.558185 | 4.1:-17550984 | MS.gene08397:CDS |
GTGCGCATATTATCTGATGC+AGG | 0.558870 | 4.1:-17548522 | MS.gene08397:CDS |
TCCGAAATCCTCAACGAACT+CGG | 0.561562 | 4.1:-17552848 | MS.gene08397:CDS |
CAGAGTGGCGATATTATCAT+CGG | 0.562633 | 4.1:-17547760 | MS.gene08397:CDS |
TTCCTAAATGGGGACTGGGT+TGG | 0.562779 | 4.1:-17549496 | MS.gene08397:CDS |
GCTGACAGGAAGCGATTTGG+AGG | 0.563584 | 4.1:-17545640 | MS.gene08397:CDS |
GATTGGTCCTGAAGAAGAAG+AGG | 0.564149 | 4.1:-17548391 | MS.gene08397:CDS |
CACTCGTCCATAGATTCTGC+GGG | 0.564579 | 4.1:+17550840 | None:intergenic |
AGTCTTCCTAAATGGGGACT+GGG | 0.566659 | 4.1:-17549500 | MS.gene08397:CDS |
CATCGGCTGATTCACAGAAA+CGG | 0.567577 | 4.1:+17545434 | None:intergenic |
TAAAGCTAAAGCACACCGAA+AGG | 0.569174 | 4.1:-17547705 | MS.gene08397:CDS |
GTTCAGTACACAGGAAAGGT+CGG | 0.569216 | 4.1:-17550387 | MS.gene08397:CDS |
AAGCTAAAGCACACCGAAAG+GGG | 0.569664 | 4.1:-17547703 | MS.gene08397:CDS |
AATTTCCCCTTCACAAAACA+AGG | 0.569701 | 4.1:-17547096 | MS.gene08397:CDS |
GATAAGTTCTCCAGTATGCA+TGG | 0.571930 | 4.1:-17547156 | MS.gene08397:CDS |
TTGGTGGAAGGTTCCACGGA+GGG | 0.572533 | 4.1:-17551119 | MS.gene08397:CDS |
TCAGTATTTGTTTGGCAAAG+AGG | 0.573019 | 4.1:-17548346 | MS.gene08397:CDS |
TGATCAGGAAGTAGCCTCCA+TGG | 0.573050 | 4.1:+17551792 | None:intergenic |
TAAATGCGAAGCATTTCGTA+GGG | 0.574024 | 4.1:-17550916 | MS.gene08397:CDS |
TAAATTGGTGGAAGGTTCCA+CGG | 0.574279 | 4.1:-17551123 | MS.gene08397:CDS |
GATAAAGTTGGATGTAACAA+GGG | 0.575870 | 4.1:-17551900 | MS.gene08397:CDS |
ATGGAAAGCCATCATCATCA+AGG | 0.577034 | 4.1:+17547800 | None:intergenic |
GATTCACAGAAACGGCAATA+CGG | 0.579961 | 4.1:+17545442 | None:intergenic |
CGGACATGTGGTGCAGACGC+TGG | 0.580564 | 4.1:+17545722 | None:intergenic |
ACCCCAGATGGTGAAAATTG+TGG | 0.580727 | 4.1:-17549655 | MS.gene08397:CDS |
TCCAGTATGCATGGACAGAA+GGG | 0.580759 | 4.1:-17547147 | MS.gene08397:CDS |
GTATCTGAGACGAATCACTC+AGG | 0.581128 | 4.1:+17545539 | None:intergenic |
AACCAATCCATTACAAACCA+TGG | 0.584723 | 4.1:-17550436 | MS.gene08397:CDS |
TCAGCTGTTTGATTGTGGGA+TGG | 0.584783 | 4.1:-17549569 | MS.gene08397:CDS |
GTGGCTGTCAATGTACATCT+CGG | 0.586094 | 4.1:-17548006 | MS.gene08397:CDS |
CAAGATTAAAGGATCTAAGT+CGG | 0.586587 | 4.1:-17548460 | MS.gene08397:CDS |
TCTGGTGGACGGAAGATTCG+AGG | 0.586643 | 4.1:-17545466 | MS.gene08397:CDS |
ACGAATCACTCAGGGTGAAG+AGG | 0.588585 | 4.1:+17545548 | None:intergenic |
TAGTGATCGCACCATCTCAC+CGG | 0.588611 | 4.1:+17545768 | None:intergenic |
GTCGGTAATGGCTTCAACAG+AGG | 0.589189 | 4.1:+17546939 | None:intergenic |
GGAGGCTACTTCCTGATCAA+GGG | 0.590334 | 4.1:-17551788 | MS.gene08397:CDS |
GATCTTCTTCTTCATCGTTG+AGG | 0.591151 | 4.1:+17552873 | None:intergenic |
GTACCTAGCTTACATGGTGA+AGG | 0.591244 | 4.1:-17550766 | MS.gene08397:CDS |
GATGTCATTGTCTGAAAGAG+TGG | 0.593214 | 4.1:+17548111 | None:intergenic |
AGTTCGTTGAGGATTTCGGA+TGG | 0.593774 | 4.1:+17552851 | None:intergenic |
ATAAATGCGAAGCATTTCGT+AGG | 0.593813 | 4.1:-17550917 | MS.gene08397:CDS |
TAGCTCTGCTACAAATGATG+TGG | 0.594428 | 4.1:+17549459 | None:intergenic |
GTCTTTGTGGATAAAACAGT+TGG | 0.594545 | 4.1:+17548133 | None:intergenic |
CAGAGCTACGAAATAGAAGA+CGG | 0.594914 | 4.1:-17549444 | MS.gene08397:CDS |
CGTGATTGCCTGATAGCTCA+CGG | 0.596157 | 4.1:-17545595 | MS.gene08397:CDS |
AAGAGCAGGTATTTCTGAAG+AGG | 0.596444 | 4.1:-17551217 | MS.gene08397:CDS |
TATCTTCGCCGAGTTCGTTG+AGG | 0.597949 | 4.1:+17552840 | None:intergenic |
GAGGACTTCAAGACTGCTTG+GGG | 0.598252 | 4.1:-17548372 | MS.gene08397:CDS |
TGTCCAGGAGTTTGTCGTGA+GGG | 0.601258 | 4.1:+17547036 | None:intergenic |
TACTAACAACCAAGAGTGGA+CGG | 0.601761 | 4.1:+17548490 | None:intergenic |
GCACTCGTCCATAGATTCTG+CGG | 0.603702 | 4.1:+17550839 | None:intergenic |
GTGATCTCACTGTTACGCCA+GGG | 0.604749 | 4.1:-17552691 | MS.gene08397:CDS |
TCCGTTTGTAATTCCCTCCG+TGG | 0.607878 | 4.1:+17551106 | None:intergenic |
ACTGGCCACAACAATGTCAT+CGG | 0.608049 | 4.1:+17545417 | None:intergenic |
CCTTCACCACACCAAAACAT+AGG | 0.609051 | 4.1:+17552590 | None:intergenic |
TGACTTTGTCTTCGGACATG+TGG | 0.610967 | 4.1:+17545710 | None:intergenic |
TTCTTAGAAGGATCAAACCC+TGG | 0.612962 | 4.1:+17552674 | None:intergenic |
GTGCTGTCTTCGAATGATGA+GGG | 0.614672 | 4.1:-17547664 | MS.gene08397:CDS |
TGCGACCGGTATCTGGTGGA+CGG | 0.619004 | 4.1:-17545477 | MS.gene08397:CDS |
AGAGTGGCGATATTATCATC+GGG | 0.621079 | 4.1:-17547759 | MS.gene08397:CDS |
GTTTGTCGTAGCAAAGCCAA+TGG | 0.622409 | 4.1:+17548185 | None:intergenic |
CAAACCTTACCCCAGTGAGA+AGG | 0.623788 | 4.1:+17549688 | None:intergenic |
CTAGACACGCTAGGTTGCAG+AGG | 0.625223 | 4.1:-17552541 | MS.gene08397:CDS |
AGATGCTTCCTAGACACGCT+AGG | 0.625587 | 4.1:-17552550 | MS.gene08397:CDS |
AGAACTTATCTCCAAGAACT+GGG | 0.626557 | 4.1:+17547169 | None:intergenic |
AGATTACCTATGAAGCTGGT+CGG | 0.626725 | 4.1:+17546921 | None:intergenic |
ACAGATGAAGAGAAATAGGA+TGG | 0.628812 | 4.1:-17551150 | MS.gene08397:CDS |
TGCAAATGTGATCTTGCGAC+CGG | 0.628861 | 4.1:-17545491 | MS.gene08397:CDS |
GGTACAACACTCTCCTAGCA+TGG | 0.629214 | 4.1:+17548232 | None:intergenic |
TAATGGGCAGAATGCAATTG+TGG | 0.631335 | 4.1:-17548025 | MS.gene08397:CDS |
AACTCCTGGACAACTACTAG+AGG | 0.636159 | 4.1:-17547025 | MS.gene08397:CDS |
TCGTCCATAGATTCTGCGGG+TGG | 0.637226 | 4.1:+17550843 | None:intergenic |
GCATATTATCTGATGCAGGA+AGG | 0.637268 | 4.1:-17548518 | MS.gene08397:CDS |
TCAGTACACAGGAAAGGTCG+GGG | 0.637306 | 4.1:-17550385 | MS.gene08397:CDS |
GGAGTGATAAGTTTAAGACT+GGG | 0.637929 | 4.1:-17551946 | MS.gene08397:CDS |
GCGGTGTGCTGATTCCGGGA+CGG | 0.638296 | 4.1:-17547737 | MS.gene08397:CDS |
AGATGGTGAAAATTGTGGAC+TGG | 0.638877 | 4.1:-17549650 | MS.gene08397:CDS |
AAGTACGGATTCAGTTACAT+TGG | 0.642669 | 4.1:+17549594 | None:intergenic |
AAAGTCAAATTCAGGAACAC+CGG | 0.652540 | 4.1:-17545694 | MS.gene08397:CDS |
TACCTCGTTGCAAAGAAGCA+CGG | 0.655926 | 4.1:+17547953 | None:intergenic |
ACAAGTTCAGTACACAGGAA+AGG | 0.656004 | 4.1:-17550391 | MS.gene08397:CDS |
ACAACAATGGAGGATCACAT+AGG | 0.657465 | 4.1:-17552941 | None:intergenic |
AGACAAAGTCTTCCTAAATG+GGG | 0.658835 | 4.1:-17549506 | MS.gene08397:CDS |
ATCAGCCGATGACATTGTTG+TGG | 0.659651 | 4.1:-17545422 | MS.gene08397:CDS |
ATCCCACAATCAAACAGCTG+AGG | 0.660109 | 4.1:+17549571 | None:intergenic |
AGAAGCACGGTTCATAACCA+AGG | 0.662007 | 4.1:+17547966 | None:intergenic |
TGTGCTGTCTTCGAATGATG+AGG | 0.662109 | 4.1:-17547665 | MS.gene08397:CDS |
GTTGGAGCAAATTTGCAGAG+TGG | 0.662192 | 4.1:-17547775 | MS.gene08397:CDS |
TGTCGTGAGGGAAATGCGTG+TGG | 0.664417 | 4.1:+17547048 | None:intergenic |
ATCACCGAAGGAATCGAAAG+CGG | 0.665906 | 4.1:+17552709 | None:intergenic |
TATCTGAGACGAATCACTCA+GGG | 0.666324 | 4.1:+17545540 | None:intergenic |
TGAACCTTACCAATATGCCA+CGG | 0.667536 | 4.1:-17552642 | MS.gene08397:CDS |
ACAATGACATCCGATTGTCT+CGG | 0.669584 | 4.1:-17548099 | MS.gene08397:CDS |
ATCTTGCGACCGGTATCTGG+TGG | 0.669773 | 4.1:-17545481 | MS.gene08397:CDS |
CGTAACAGTGAGATCACCGA+AGG | 0.674189 | 4.1:+17552697 | None:intergenic |
TGCTGTCTTCGAATGATGAG+GGG | 0.676097 | 4.1:-17547663 | MS.gene08397:CDS |
AGATTACTAACAACCAAGAG+TGG | 0.676652 | 4.1:+17548486 | None:intergenic |
AGGCAACAAGTTCAGTACAC+AGG | 0.677661 | 4.1:-17550396 | MS.gene08397:CDS |
AACCGTGCTTCTTTGCAACG+AGG | 0.677944 | 4.1:-17547955 | MS.gene08397:CDS |
CACATTCCCAAACTTAACCG+TGG | 0.682482 | 4.1:+17552625 | None:intergenic |
GGATCTCATCGATTATGGAG+AGG | 0.689075 | 4.1:-17550991 | MS.gene08397:CDS |
TGCAGGCATCCTTCTCACTG+GGG | 0.689696 | 4.1:-17549697 | MS.gene08397:intron |
ACGAACGAGTATACAACGGG+AGG | 0.689778 | 4.1:-17545792 | MS.gene08397:CDS |
TTGTCCAGGAGTTTGTCGTG+AGG | 0.693746 | 4.1:+17547035 | None:intergenic |
ATGATACTATGACCGTTCTG+GGG | 0.703583 | 4.1:-17549534 | MS.gene08397:CDS |
GGTGACTGTGAATTTGACCA+TGG | 0.715593 | 4.1:-17551809 | MS.gene08397:CDS |
TCTCTTTGCATCCATCCGTG+AGG | 0.721646 | 4.1:-17550946 | MS.gene08397:CDS |
GGGAACGAACGAGTATACAA+CGG | 0.731907 | 4.1:-17545796 | MS.gene08397:CDS |
TGGCTGAATTAAGAAGAACA+AGG | 0.738169 | 4.1:-17550416 | MS.gene08397:CDS |
AAATGCGAAGCATTTCGTAG+GGG | 0.740610 | 4.1:-17550915 | MS.gene08397:CDS |
GTGGCGATATTATCATCGGG+CGG | 0.751163 | 4.1:-17547756 | MS.gene08397:CDS |
ATTGGTGGAAGGTTCCACGG+AGG | 0.762849 | 4.1:-17551120 | MS.gene08397:CDS |
GACTGTGAATTTGACCATGG+AGG | 0.784934 | 4.1:-17551806 | MS.gene08397:CDS |
GTATTGATCGAAGAACATGA+CGG | 0.801822 | 4.1:+17552790 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 17545336 | 17552957 | 17545336 | ID=MS.gene08397 |
chr4.1 | mRNA | 17545336 | 17552957 | 17545336 | ID=MS.gene08397.t1;Parent=MS.gene08397 |
chr4.1 | exon | 17552499 | 17552957 | 17552499 | ID=MS.gene08397.t1.exon1;Parent=MS.gene08397.t1 |
chr4.1 | CDS | 17552499 | 17552957 | 17552499 | ID=cds.MS.gene08397.t1;Parent=MS.gene08397.t1 |
chr4.1 | exon | 17551778 | 17551990 | 17551778 | ID=MS.gene08397.t1.exon2;Parent=MS.gene08397.t1 |
chr4.1 | CDS | 17551778 | 17551990 | 17551778 | ID=cds.MS.gene08397.t1;Parent=MS.gene08397.t1 |
chr4.1 | exon | 17550372 | 17551252 | 17550372 | ID=MS.gene08397.t1.exon3;Parent=MS.gene08397.t1 |
chr4.1 | CDS | 17550372 | 17551252 | 17550372 | ID=cds.MS.gene08397.t1;Parent=MS.gene08397.t1 |
chr4.1 | exon | 17549423 | 17549714 | 17549423 | ID=MS.gene08397.t1.exon4;Parent=MS.gene08397.t1 |
chr4.1 | CDS | 17549423 | 17549714 | 17549423 | ID=cds.MS.gene08397.t1;Parent=MS.gene08397.t1 |
chr4.1 | exon | 17547633 | 17548577 | 17547633 | ID=MS.gene08397.t1.exon5;Parent=MS.gene08397.t1 |
chr4.1 | CDS | 17547633 | 17548577 | 17547633 | ID=cds.MS.gene08397.t1;Parent=MS.gene08397.t1 |
chr4.1 | exon | 17546928 | 17547199 | 17546928 | ID=MS.gene08397.t1.exon6;Parent=MS.gene08397.t1 |
chr4.1 | CDS | 17546928 | 17547199 | 17546928 | ID=cds.MS.gene08397.t1;Parent=MS.gene08397.t1 |
chr4.1 | exon | 17545336 | 17545837 | 17545336 | ID=MS.gene08397.t1.exon7;Parent=MS.gene08397.t1 |
chr4.1 | CDS | 17545336 | 17545837 | 17545336 | ID=cds.MS.gene08397.t1;Parent=MS.gene08397.t1 |
Gene Sequence |
Protein sequence |