Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35217.t1 | RHN42280.1 | 97.9 | 1187 | 24 | 1 | 1 | 1187 | 1 | 1186 | 0.00E+00 | 2346.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35217.t1 | Q9LK40 | 68.0 | 1193 | 337 | 15 | 17 | 1187 | 3 | 1172 | 0.0e+00 | 1615.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35217.t1 | A0A396GML5 | 97.9 | 1187 | 24 | 1 | 1 | 1187 | 1 | 1186 | 0.0e+00 | 2346.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35217 | MS.gene27287 | PPI |
| MS.gene35217 | MS.gene023227 | PPI |
| MS.gene014907 | MS.gene35217 | PPI |
| MS.gene35217 | MS.gene023462 | PPI |
| MS.gene35217 | MS.gene42606 | PPI |
| MS.gene35217 | MS.gene32699 | PPI |
| MS.gene35217 | MS.gene08846 | PPI |
| MS.gene023227 | MS.gene35217 | PPI |
| MS.gene35217 | MS.gene80189 | PPI |
| MS.gene35217 | MS.gene27025 | PPI |
| MS.gene35217 | MS.gene09000 | PPI |
| MS.gene35217 | MS.gene80187 | PPI |
| MS.gene35217 | MS.gene028236 | PPI |
| MS.gene35217 | MS.gene42607 | PPI |
| MS.gene08397 | MS.gene35217 | PPI |
| MS.gene35217 | MS.gene09247 | PPI |
| MS.gene35217 | MS.gene32700 | PPI |
| MS.gene35217 | MS.gene90747 | PPI |
| MS.gene35217 | MS.gene08397 | PPI |
| MS.gene028236 | MS.gene35217 | PPI |
| MS.gene35217 | MS.gene24205 | PPI |
| MS.gene80189 | MS.gene35217 | PPI |
| MS.gene35217 | MS.gene42612 | PPI |
| MS.gene35217 | MS.gene014907 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35217.t1 | MTR_3g105990 | 96.209 | 1187 | 43 | 2 | 3 | 1187 | 2 | 1188 | 0.0 | 2376 |
| MS.gene35217.t1 | MTR_0189s0050 | 96.718 | 518 | 16 | 1 | 1 | 518 | 1 | 517 | 0.0 | 1041 |
| MS.gene35217.t1 | MTR_1g023500 | 35.004 | 1197 | 665 | 29 | 52 | 1185 | 36 | 1182 | 0.0 | 666 |
| MS.gene35217.t1 | MTR_8g023445 | 30.000 | 1190 | 694 | 31 | 52 | 1185 | 894 | 2000 | 7.60e-139 | 465 |
| MS.gene35217.t1 | MTR_4g124030 | 26.559 | 1235 | 712 | 45 | 58 | 1183 | 31 | 1179 | 3.95e-95 | 331 |
| MS.gene35217.t1 | MTR_0002s0510 | 25.592 | 422 | 267 | 8 | 737 | 1116 | 653 | 1069 | 2.82e-30 | 131 |
| MS.gene35217.t1 | MTR_4g051130 | 25.442 | 452 | 264 | 12 | 773 | 1180 | 618 | 1040 | 1.53e-28 | 125 |
| MS.gene35217.t1 | MTR_1g022135 | 24.825 | 286 | 141 | 12 | 132 | 401 | 11 | 238 | 1.89e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35217.t1 | AT3G23780 | 67.980 | 1193 | 337 | 15 | 17 | 1187 | 3 | 1172 | 0.0 | 1637 |
| MS.gene35217.t1 | AT3G23780 | 67.980 | 1193 | 337 | 15 | 17 | 1187 | 3 | 1172 | 0.0 | 1637 |
| MS.gene35217.t1 | AT3G18090 | 69.123 | 1072 | 293 | 11 | 135 | 1187 | 3 | 1055 | 0.0 | 1513 |
| MS.gene35217.t1 | AT3G18090 | 66.337 | 909 | 268 | 11 | 135 | 1024 | 3 | 892 | 0.0 | 1217 |
| MS.gene35217.t1 | AT3G18090 | 66.446 | 906 | 266 | 11 | 135 | 1021 | 3 | 889 | 0.0 | 1216 |
| MS.gene35217.t1 | AT4G21710 | 34.500 | 1229 | 692 | 29 | 20 | 1185 | 1 | 1179 | 0.0 | 659 |
| MS.gene35217.t1 | AT5G45140 | 31.208 | 1192 | 677 | 36 | 52 | 1178 | 39 | 1152 | 9.99e-150 | 480 |
| MS.gene35217.t1 | AT5G45140 | 31.208 | 1192 | 677 | 36 | 52 | 1178 | 39 | 1152 | 9.99e-150 | 480 |
| MS.gene35217.t1 | AT1G29940 | 25.622 | 1245 | 722 | 39 | 52 | 1183 | 16 | 1169 | 4.64e-90 | 316 |
| MS.gene35217.t1 | AT5G45140 | 29.218 | 818 | 470 | 28 | 52 | 826 | 39 | 790 | 2.23e-75 | 268 |
| MS.gene35217.t1 | ATCG00190 | 25.161 | 465 | 289 | 13 | 715 | 1134 | 577 | 1027 | 1.58e-27 | 121 |
Find 302 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAAGACATTGTTAATTT+TGG | 0.068206 | 4.4:-18585620 | MS.gene35217:CDS |
| AAAGCATCGACTCTTATATT+TGG | 0.162091 | 4.4:+18585926 | None:intergenic |
| TTGAACATCAACTTTCATTT+TGG | 0.208141 | 4.4:+18590243 | None:intergenic |
| AAAGACAAAGTCTTCCTAAA+TGG | 0.218088 | 4.4:-18587272 | MS.gene35217:CDS |
| AAATAGGATGGTTGTTAAAT+TGG | 0.238146 | 4.4:-18588876 | MS.gene35217:CDS |
| GGTGCGATCACTAATATTTA+TGG | 0.247178 | 4.4:-18583522 | MS.gene35217:CDS |
| CCAAAGTCTGAATTCTATAA+TGG | 0.247666 | 4.4:-18585806 | MS.gene35217:CDS |
| CAATATGCCACGGTTAAGTT+TGG | 0.252447 | 4.4:-18590370 | MS.gene35217:CDS |
| TTGAAGTCCTCTTCTTCTTC+AGG | 0.252661 | 4.4:+18586148 | None:intergenic |
| AGTAATCTGCTCAAGATTAA+AGG | 0.253696 | 4.4:-18586235 | MS.gene35217:CDS |
| TTGGAGACCATTTGTAATAA+TGG | 0.265166 | 4.4:+18588277 | None:intergenic |
| TATGTCTTTCCGAACATTAA+AGG | 0.270375 | 4.4:-18588545 | MS.gene35217:CDS |
| GCATGGACAGAAGGGTGTTT+TGG | 0.277868 | 4.4:-18584903 | MS.gene35217:CDS |
| GCCGAGTTCGTTGAGGATTT+CGG | 0.279917 | 4.4:+18590585 | None:intergenic |
| ACTTGATATGTCGTTCTTAT+TGG | 0.284151 | 4.4:-18586056 | MS.gene35217:CDS |
| GAAAGTTGATGTTCAACTTC+AGG | 0.293979 | 4.4:-18590236 | MS.gene35217:intron |
| TGGCCTGAGAAGAATGCTTC+TGG | 0.296378 | 4.4:+18585969 | None:intergenic |
| CTTGATATGTCGTTCTTATT+GGG | 0.297883 | 4.4:-18586055 | MS.gene35217:CDS |
| CAAAGCTGAAATTGAGAATA+AGG | 0.300709 | 4.4:-18585666 | MS.gene35217:CDS |
| TTCTTAGAGGAACGTGTAAA+AGG | 0.305968 | 4.4:-18588614 | MS.gene35217:CDS |
| CTCCAGTAGAAAACGCTCTT+TGG | 0.308318 | 4.4:+18588258 | None:intergenic |
| AGAAGTGATGAATTGATTAT+AGG | 0.315125 | 4.4:+18590480 | None:intergenic |
| GCTCTGCAGAGAGACCTTTA+TGG | 0.316497 | 4.4:-18588341 | MS.gene35217:CDS |
| TTCCAGTCCCTATTGGATTA+TGG | 0.316905 | 4.4:-18586190 | MS.gene35217:CDS |
| TGATGATACTATGACCGTTC+TGG | 0.319004 | 4.4:-18587300 | MS.gene35217:CDS |
| CCAAAATTAACAATGTCTTC+AGG | 0.325956 | 4.4:+18585620 | None:intergenic |
| TGGTCAAGTCTGATCTTTGC+TGG | 0.326694 | 4.4:-18589588 | MS.gene35217:CDS |
| GGTTTCAAATATTCCGTATT+GGG | 0.328046 | 4.4:-18588927 | MS.gene35217:CDS |
| TAAATCTTTCCAGTCCCTAT+TGG | 0.328315 | 4.4:-18586197 | MS.gene35217:CDS |
| GGAAAGATAGAGAGTAAAAT+TGG | 0.330169 | 4.4:-18585599 | MS.gene35217:CDS |
| TGAGTTGGCTGGTGAGCTGC+TGG | 0.335127 | 4.4:-18588414 | MS.gene35217:CDS |
| TCATCAACACCTTTCTTAGA+AGG | 0.335400 | 4.4:+18590400 | None:intergenic |
| CAGGTTAGAAGCCCAGTTCT+TGG | 0.335580 | 4.4:-18584944 | MS.gene35217:CDS |
| GTTTCCACCCGCAGAATCTA+TGG | 0.335619 | 4.4:-18588585 | MS.gene35217:CDS |
| CGATTTGGAGGTATCAAGTT+TGG | 0.336084 | 4.4:-18583392 | MS.gene35217:CDS |
| AGTCACAGATGAAGAGAAAT+AGG | 0.340801 | 4.4:-18588892 | MS.gene35217:CDS |
| TATAATCAATTCATCACTTC+TGG | 0.341794 | 4.4:-18590478 | MS.gene35217:CDS |
| TGTGCTTTAGCTTTATACTA+TGG | 0.343766 | 4.4:+18585477 | None:intergenic |
| AGATCAGACTTGACCATAAC+AGG | 0.353811 | 4.4:+18589595 | None:intergenic |
| TGTGGATTTATAACAATATC+AGG | 0.355965 | 4.4:+18584830 | None:intergenic |
| CAACGAACTCGGCGAAGATA+TGG | 0.356205 | 4.4:-18590575 | MS.gene35217:CDS |
| AAGCATCGACTCTTATATTT+GGG | 0.358815 | 4.4:+18585927 | None:intergenic |
| CCTGAATTTGACTTTGTCTT+CGG | 0.358897 | 4.4:+18583466 | None:intergenic |
| CTCCAACCCAGTCCCCATTT+AGG | 0.359540 | 4.4:+18587258 | None:intergenic |
| CGCTTGATCGACCTATGTTT+TGG | 0.361100 | 4.4:-18590339 | MS.gene35217:CDS |
| GATGATGGCTTTCCATTTGT+TGG | 0.362742 | 4.4:-18585557 | MS.gene35217:CDS |
| CAAACTTAACCGTGGCATAT+TGG | 0.364361 | 4.4:+18590371 | None:intergenic |
| TATTGGTAGATTGCCTGTTA+TGG | 0.365823 | 4.4:-18589608 | MS.gene35217:CDS |
| ATCGGGCGGTGTGCTGATTC+CGG | 0.370475 | 4.4:-18585506 | MS.gene35217:CDS |
| TTCCTCAGCTGTTTGATTGT+GGG | 0.376159 | 4.4:-18587337 | MS.gene35217:CDS |
| TGCAAATTTGCTCCAACAAA+TGG | 0.377429 | 4.4:+18585545 | None:intergenic |
| CCATTACCGACCAGCTTCAT+AGG | 0.377816 | 4.4:-18584691 | MS.gene35217:intron |
| CAATCACGCCATAATCCAAT+AGG | 0.378016 | 4.4:+18586182 | None:intergenic |
| GCGACAGGCTGTCGGGTCAA+TGG | 0.380744 | 4.4:+18583425 | None:intergenic |
| AGGTATTTCTGAAGAGGCTC+TGG | 0.381603 | 4.4:-18588949 | MS.gene35217:CDS |
| TCTGGTGTAGTTGCAACTCT+TGG | 0.381884 | 4.4:-18588200 | MS.gene35217:CDS |
| GAGAACTTATCTCCAAGAAC+TGG | 0.386193 | 4.4:+18584932 | None:intergenic |
| CCGAAGACAAAGTCAAATTC+AGG | 0.388621 | 4.4:-18583466 | MS.gene35217:CDS |
| TGTTCAGATCTGAGCATATA+AGG | 0.389042 | 4.4:-18585694 | MS.gene35217:CDS |
| AAGACAAAGTCTTCCTAAAT+GGG | 0.391964 | 4.4:-18587271 | MS.gene35217:CDS |
| CTGATGCACCGTGAGCTATC+AGG | 0.392438 | 4.4:+18583351 | None:intergenic |
| GACAACAACTTTGCTCCATA+TGG | 0.393361 | 4.4:+18583155 | None:intergenic |
| GTGATCTTGCGACCGGTATC+TGG | 0.396475 | 4.4:-18583248 | MS.gene35217:CDS |
| GTCGCTGACAGGAAGCGATT+TGG | 0.397585 | 4.4:-18583407 | MS.gene35217:CDS |
| AGGTATCAAGTTTGGTGAAA+TGG | 0.397863 | 4.4:-18583384 | MS.gene35217:CDS |
| TTATCACTCCGAACCTTCTT+CGG | 0.400038 | 4.4:+18589697 | None:intergenic |
| ACCCTTCTGTCCATGCATAC+TGG | 0.403623 | 4.4:+18584910 | None:intergenic |
| TGGGGTGTTCAGTATTTGTT+TGG | 0.404123 | 4.4:-18586118 | MS.gene35217:CDS |
| AAAAGGATGGAAAGGATATC+TGG | 0.404544 | 4.4:-18588218 | MS.gene35217:CDS |
| ATTGATTATAGGAGTTGATT+TGG | 0.407015 | 4.4:+18590491 | None:intergenic |
| GGGTTTCAAATATTCCGTAT+TGG | 0.410124 | 4.4:-18588928 | MS.gene35217:CDS |
| GATGATACTATGACCGTTCT+GGG | 0.412400 | 4.4:-18587299 | MS.gene35217:CDS |
| CGGAGTGATAAGTTTAAGAC+TGG | 0.412464 | 4.4:-18589685 | MS.gene35217:CDS |
| AGAGGACTTCAAGACTGCTT+GGG | 0.413762 | 4.4:-18586137 | MS.gene35217:CDS |
| CAAAGTCTGAATTCTATAAT+GGG | 0.419058 | 4.4:-18585805 | MS.gene35217:CDS |
| CTTCCTCAGCTGTTTGATTG+TGG | 0.425534 | 4.4:-18587338 | MS.gene35217:CDS |
| GTTGCAGGCATCCTTCTCAC+TGG | 0.426530 | 4.4:-18587463 | MS.gene35217:intron |
| CGCATTTATCGTCTGCCTCA+CGG | 0.426660 | 4.4:+18588669 | None:intergenic |
| TCCTGTCAGCGACAGGCTGT+CGG | 0.428603 | 4.4:+18583417 | None:intergenic |
| AAGGATTCTCCGTCCACTCT+TGG | 0.429803 | 4.4:-18586263 | MS.gene35217:CDS |
| TTTCACCATCTGGGGTAGAA+AGG | 0.429958 | 4.4:+18587426 | None:intergenic |
| CGACAGGCTGTCGGGTCAAT+GGG | 0.430294 | 4.4:+18583426 | None:intergenic |
| CAATCCGCTTTCGATTCCTT+CGG | 0.431632 | 4.4:-18590451 | MS.gene35217:CDS |
| GTTCTTCTACTAGCGTATAC+TGG | 0.433697 | 4.4:-18588482 | MS.gene35217:CDS |
| GCATCCTTCTCACTGGGGTA+AGG | 0.434903 | 4.4:-18587456 | MS.gene35217:CDS |
| GAGAAGAATGCTTCTGGGAT+TGG | 0.435150 | 4.4:+18585975 | None:intergenic |
| ACAACTACTAGAGGCTGCTT+TGG | 0.435996 | 4.4:-18584780 | MS.gene35217:CDS |
| GACGCTTCCATTATTACAAA+TGG | 0.436306 | 4.4:-18588284 | MS.gene35217:CDS |
| AATATGCCACGGTTAAGTTT+GGG | 0.436673 | 4.4:-18590369 | MS.gene35217:CDS |
| GTGCGATCACTAATATTTAT+GGG | 0.437084 | 4.4:-18583521 | MS.gene35217:CDS |
| AATTCAGCCATGGTTTGTAA+TGG | 0.438058 | 4.4:+18588167 | None:intergenic |
| TGCTGTTGTTTCGTTAAGAC+AGG | 0.440677 | 4.4:-18585396 | MS.gene35217:intron |
| GAACATCTCGATCTCCATAA+AGG | 0.443290 | 4.4:+18588327 | None:intergenic |
| TCAGGTATATGTTCCGAAGA+AGG | 0.446001 | 4.4:-18589710 | MS.gene35217:intron |
| CCTTCTCAGCACCCTTGATC+AGG | 0.446573 | 4.4:+18589515 | None:intergenic |
| ATTGTGGATCTCATCGATTA+TGG | 0.448219 | 4.4:-18588734 | MS.gene35217:CDS |
| GGTGATCTCACTGTTACGCC+AGG | 0.455533 | 4.4:-18590430 | MS.gene35217:CDS |
| CTCGGAAAACCTGGATATCT+AGG | 0.455828 | 4.4:-18585845 | MS.gene35217:CDS |
| CGAAAGGGGTTATGTTCAAA+AGG | 0.455941 | 4.4:-18585453 | MS.gene35217:CDS |
| TCGGGCGGTGTGCTGATTCC+GGG | 0.456470 | 4.4:-18585505 | MS.gene35217:CDS |
| CAACTACTAGAGGCTGCTTT+GGG | 0.457722 | 4.4:-18584779 | MS.gene35217:CDS |
| CCTGTCAGCGACAGGCTGTC+GGG | 0.459295 | 4.4:+18583418 | None:intergenic |
| AGCCATGGTTTGTAATGGAT+TGG | 0.460916 | 4.4:+18588172 | None:intergenic |
| CTAGAGGCTGCTTTGGGAAA+GGG | 0.461237 | 4.4:-18584773 | MS.gene35217:CDS |
| TTCAGTACACAGGAAAGGTC+GGG | 0.465796 | 4.4:-18588124 | MS.gene35217:CDS |
| AAGAGGACTTCAAGACTGCT+TGG | 0.469345 | 4.4:-18586138 | MS.gene35217:CDS |
| CAGTATTTGTTTGGCAAAGA+GGG | 0.469527 | 4.4:-18586109 | MS.gene35217:CDS |
| AAGCATTCTTCTCAGGCCAT+TGG | 0.470338 | 4.4:-18585965 | MS.gene35217:CDS |
| TGTCGGGTCAATGGGTGAAC+TGG | 0.473461 | 4.4:+18583434 | None:intergenic |
| CCTATGAAGCTGGTCGGTAA+TGG | 0.473583 | 4.4:+18584691 | None:intergenic |
| TTTCCCTCACGACAAACTCC+TGG | 0.475136 | 4.4:-18584803 | MS.gene35217:CDS |
| GGCCTGAGAAGAATGCTTCT+GGG | 0.475788 | 4.4:+18585970 | None:intergenic |
| GAGAAATGAGTTGCCTCATC+AGG | 0.476514 | 4.4:-18587186 | MS.gene35217:intron |
| GATATTTATTGCACAAGAGC+AGG | 0.477763 | 4.4:-18588969 | MS.gene35217:CDS |
| TCCGATTGTCTCGGAAAACC+TGG | 0.478573 | 4.4:-18585854 | MS.gene35217:CDS |
| GTCTCAGGAGCTGTTCAGCA+TGG | 0.478761 | 4.4:-18583135 | MS.gene35217:CDS |
| TGGAGGCTACTTCCTGATCA+AGG | 0.479532 | 4.4:-18589527 | MS.gene35217:CDS |
| GCAGACGCTGGTAGAATGTT+GGG | 0.481808 | 4.4:+18583498 | None:intergenic |
| CCATTATAGAATTCAGACTT+TGG | 0.484719 | 4.4:+18585806 | None:intergenic |
| TTACTCTGACCTAGATATCC+AGG | 0.485264 | 4.4:+18585836 | None:intergenic |
| GCAGCCTCTAGTAGTTGTCC+AGG | 0.486041 | 4.4:+18584785 | None:intergenic |
| AAGTCTTCCTAAATGGGGAC+TGG | 0.487711 | 4.4:-18587265 | MS.gene35217:CDS |
| TTCACAATGTGTGTACTTCA+CGG | 0.488577 | 4.4:+18586078 | None:intergenic |
| GTCTGAAAGAGTGGTCTTTG+TGG | 0.490054 | 4.4:+18585884 | None:intergenic |
| TGTTTCCTTTCTACCCCAGA+TGG | 0.490279 | 4.4:-18587431 | MS.gene35217:CDS |
| TGGATGAGTGAAGCTGAAAA+AGG | 0.492402 | 4.4:-18589568 | MS.gene35217:CDS |
| CGCCATAATCCAATAGGGAC+TGG | 0.492490 | 4.4:+18586188 | None:intergenic |
| TGGAGCAAAGTTGTTGTCTC+AGG | 0.492582 | 4.4:-18583150 | MS.gene35217:CDS |
| CTGGTGTAGTTGCAACTCTT+GGG | 0.493357 | 4.4:-18588199 | MS.gene35217:CDS |
| TAACAGCATCTACACAGAAA+TGG | 0.493360 | 4.4:-18590641 | MS.gene35217:CDS |
| TGTTCTTCTTAATTCAGCCA+TGG | 0.493474 | 4.4:+18588157 | None:intergenic |
| TAGGATGGTTGTTAAATTGG+TGG | 0.495089 | 4.4:-18588873 | MS.gene35217:CDS |
| GGGTTTGATCCTTCTAAGAA+AGG | 0.495219 | 4.4:-18590409 | MS.gene35217:CDS |
| GTAACAAGGGAAATAACTAT+TGG | 0.495414 | 4.4:-18589625 | MS.gene35217:CDS |
| TTGCAGGCATCCTTCTCACT+GGG | 0.496735 | 4.4:-18587462 | MS.gene35217:intron |
| AATCGCTTCCTGTCAGCGAC+AGG | 0.499397 | 4.4:+18583410 | None:intergenic |
| ATCCCAGAAGCATTCTTCTC+AGG | 0.500790 | 4.4:-18585972 | MS.gene35217:CDS |
| GGTCAATGGGTGAACTGGAC+CGG | 0.505931 | 4.4:+18583439 | None:intergenic |
| GCGCATGCTCGGAAGCGAAT+GGG | 0.506782 | 4.4:-18588368 | MS.gene35217:CDS |
| AATAAGAGGCTTGAGTTGGC+TGG | 0.507515 | 4.4:-18588425 | MS.gene35217:CDS |
| CGAGTATACAACGGGAGGAC+CGG | 0.510416 | 4.4:-18583551 | MS.gene35217:CDS |
| CCCGACAGCCTGTCGCTGAC+AGG | 0.511250 | 4.4:-18583418 | MS.gene35217:CDS |
| CCTGATCAAGGGTGCTGAGA+AGG | 0.511307 | 4.4:-18589515 | MS.gene35217:intron |
| GCATGGTCATGATTTGCAAA+TGG | 0.512791 | 4.4:+18586013 | None:intergenic |
| TATATGTTCCGAAGAAGGTT+CGG | 0.514071 | 4.4:-18589705 | MS.gene35217:CDS |
| TTGCAAATCATGACCATGCT+AGG | 0.514874 | 4.4:-18586009 | MS.gene35217:CDS |
| TCGAAATAAGAGGCTTGAGT+TGG | 0.515093 | 4.4:-18588429 | MS.gene35217:CDS |
| CTCCAGTATGCATGGACAGA+AGG | 0.515563 | 4.4:-18584912 | MS.gene35217:CDS |
| TATGGCGTGATTGAGCTGAT+TGG | 0.516661 | 4.4:-18586172 | MS.gene35217:CDS |
| TATTGATAGAGAGATAAAGT+TGG | 0.517236 | 4.4:-18589650 | MS.gene35217:CDS |
| CATGGACACATCCTTTCAAA+AGG | 0.518074 | 4.4:-18588235 | MS.gene35217:CDS |
| ACTAGAGGCTGCTTTGGGAA+AGG | 0.518204 | 4.4:-18584774 | MS.gene35217:CDS |
| GACACATCCTTTCAAAAGGA+TGG | 0.521759 | 4.4:-18588231 | MS.gene35217:CDS |
| AATGGCTTCAACAGAGGAAG+TGG | 0.521973 | 4.4:+18584709 | None:intergenic |
| GTTGTGGCCAGTGTTCCATA+TGG | 0.522270 | 4.4:-18583170 | MS.gene35217:CDS |
| GGAAAGGGCATCGCTTGTGT+TGG | 0.523598 | 4.4:-18584758 | MS.gene35217:CDS |
| TGCAGACGCTGGTAGAATGT+TGG | 0.525149 | 4.4:+18583497 | None:intergenic |
| ATCAAACAGCTGAGGAAGTA+CGG | 0.526202 | 4.4:+18587343 | None:intergenic |
| AGATAAAGTTGGATGTAACA+AGG | 0.526319 | 4.4:-18589639 | MS.gene35217:CDS |
| AAGTGCACTTTGCGCATGCT+CGG | 0.527063 | 4.4:-18588379 | MS.gene35217:CDS |
| ATATAATCAAGAAGATTCCT+TGG | 0.528881 | 4.4:-18585747 | MS.gene35217:CDS |
| AAAGCTAAAGCACACCGAAA+GGG | 0.531794 | 4.4:-18585468 | MS.gene35217:CDS |
| TGCGCATGCTCGGAAGCGAA+TGG | 0.532402 | 4.4:-18588369 | MS.gene35217:CDS |
| TCAACAGAGGAAGTGGAGAA+AGG | 0.532899 | 4.4:+18584716 | None:intergenic |
| TCTCAGGAGCTGTTCAGCAT+GGG | 0.533250 | 4.4:-18583134 | MS.gene35217:CDS |
| CACTTCTGATAAAGAGATTG+TGG | 0.536535 | 4.4:-18588750 | MS.gene35217:CDS |
| ATCCTTTCAAAAGGATGGAA+AGG | 0.537841 | 4.4:-18588226 | MS.gene35217:CDS |
| ATCTTCCGTCCACCAGATAC+CGG | 0.538540 | 4.4:+18583236 | None:intergenic |
| GGTATTTCTGAAGAGGCTCT+GGG | 0.538649 | 4.4:-18588948 | MS.gene35217:CDS |
| AATCACGCCATAATCCAATA+GGG | 0.538659 | 4.4:+18586183 | None:intergenic |
| CTCTGCAACCTAGCGTGTCT+AGG | 0.539892 | 4.4:+18590280 | None:intergenic |
| GGAACGAACGAGTATACAAC+GGG | 0.539991 | 4.4:-18583559 | MS.gene35217:CDS |
| GGCTAGGTACCTAGCTTACA+TGG | 0.542880 | 4.4:-18588510 | MS.gene35217:CDS |
| GATTAAAAGCGAACCTGATG+AGG | 0.544004 | 4.4:+18587173 | None:intergenic |
| TGTCTGTCGAGATACCTGTA+TGG | 0.544838 | 4.4:-18588796 | MS.gene35217:CDS |
| TGCTCGGAAGCGAATGGGAA+AGG | 0.546238 | 4.4:-18588363 | MS.gene35217:CDS |
| GTTGATAGCCTTGATGATGA+TGG | 0.547320 | 4.4:-18585572 | MS.gene35217:CDS |
| ATGGTTGTTAAATTGGTGGA+AGG | 0.549390 | 4.4:-18588869 | MS.gene35217:CDS |
| TTAACCGTGGCATATTGGTA+AGG | 0.551639 | 4.4:+18590376 | None:intergenic |
| TTGAAAGCAACAGCCCAATA+CGG | 0.551751 | 4.4:+18588914 | None:intergenic |
| CTTTATACTATGGTCCGTCC+CGG | 0.551918 | 4.4:+18585487 | None:intergenic |
| CTTTGCTCCATATGGAACAC+TGG | 0.552473 | 4.4:+18583163 | None:intergenic |
| CAACGGGAGGACCGGTGAGA+TGG | 0.554842 | 4.4:-18583543 | MS.gene35217:CDS |
| TCCACGGAGGGAATTACAAA+CGG | 0.555312 | 4.4:-18588845 | MS.gene35217:CDS |
| TGGAAGATTACCTATGAAGC+TGG | 0.555512 | 4.4:+18584681 | None:intergenic |
| TTTATCGTCTGCCTCACGGA+TGG | 0.555913 | 4.4:+18588673 | None:intergenic |
| GTCATGTTCTTCGATCAATA+CGG | 0.556617 | 4.4:-18590526 | MS.gene35217:CDS |
| GAACCTTCACCATGTAAGCT+AGG | 0.558023 | 4.4:+18588501 | None:intergenic |
| ATCGATTATGGAGAGGCAGA+TGG | 0.558185 | 4.4:-18588722 | MS.gene35217:CDS |
| GTGCGCATATTATCTGATGC+AGG | 0.558870 | 4.4:-18586286 | MS.gene35217:CDS |
| TCCGAAATCCTCAACGAACT+CGG | 0.561562 | 4.4:-18590586 | MS.gene35217:CDS |
| CAGAGTGGCGATATTATCAT+CGG | 0.562633 | 4.4:-18585524 | MS.gene35217:CDS |
| TTCCTAAATGGGGACTGGGT+TGG | 0.562779 | 4.4:-18587260 | MS.gene35217:CDS |
| GCTGACAGGAAGCGATTTGG+AGG | 0.563584 | 4.4:-18583404 | MS.gene35217:CDS |
| GATTGGTCCTGAAGAAGAAG+AGG | 0.564149 | 4.4:-18586155 | MS.gene35217:CDS |
| CACTCGTCCATAGATTCTGC+GGG | 0.564579 | 4.4:+18588578 | None:intergenic |
| AGTCTTCCTAAATGGGGACT+GGG | 0.566659 | 4.4:-18587264 | MS.gene35217:CDS |
| CATCGGCTGATTCACAGAAA+CGG | 0.567577 | 4.4:+18583198 | None:intergenic |
| TAAAGCTAAAGCACACCGAA+AGG | 0.569174 | 4.4:-18585469 | MS.gene35217:CDS |
| GTTCAGTACACAGGAAAGGT+CGG | 0.569216 | 4.4:-18588125 | MS.gene35217:CDS |
| AAGCTAAAGCACACCGAAAG+GGG | 0.569664 | 4.4:-18585467 | MS.gene35217:CDS |
| AATTTCCCCTTCACAAAACA+AGG | 0.569701 | 4.4:-18584860 | MS.gene35217:CDS |
| GATAAGTTCTCCAGTATGCA+TGG | 0.571930 | 4.4:-18584920 | MS.gene35217:CDS |
| TTGGTGGAAGGTTCCACGGA+GGG | 0.572533 | 4.4:-18588857 | MS.gene35217:CDS |
| TCAGTATTTGTTTGGCAAAG+AGG | 0.573019 | 4.4:-18586110 | MS.gene35217:CDS |
| TGATCAGGAAGTAGCCTCCA+TGG | 0.573050 | 4.4:+18589530 | None:intergenic |
| TAAATGCGAAGCATTTCGTA+GGG | 0.574024 | 4.4:-18588654 | MS.gene35217:CDS |
| TAAATTGGTGGAAGGTTCCA+CGG | 0.574279 | 4.4:-18588861 | MS.gene35217:CDS |
| GATAAAGTTGGATGTAACAA+GGG | 0.575870 | 4.4:-18589638 | MS.gene35217:CDS |
| ATGGAAAGCCATCATCATCA+AGG | 0.577034 | 4.4:+18585564 | None:intergenic |
| GATTCACAGAAACGGCAATA+CGG | 0.579961 | 4.4:+18583206 | None:intergenic |
| CGGACATGTGGTGCAGACGC+TGG | 0.580564 | 4.4:+18583486 | None:intergenic |
| ACCCCAGATGGTGAAAATTG+TGG | 0.580727 | 4.4:-18587419 | MS.gene35217:CDS |
| TCCAGTATGCATGGACAGAA+GGG | 0.580759 | 4.4:-18584911 | MS.gene35217:CDS |
| GTATCTGAGACGAATCACTC+AGG | 0.581128 | 4.4:+18583303 | None:intergenic |
| AACCAATCCATTACAAACCA+TGG | 0.584723 | 4.4:-18588174 | MS.gene35217:CDS |
| TCAGCTGTTTGATTGTGGGA+TGG | 0.584783 | 4.4:-18587333 | MS.gene35217:CDS |
| GTGGCTGTCAATGTACATCT+CGG | 0.586094 | 4.4:-18585770 | MS.gene35217:CDS |
| CAAGATTAAAGGATCTAAGT+CGG | 0.586587 | 4.4:-18586224 | MS.gene35217:CDS |
| TCTGGTGGACGGAAGATTCG+AGG | 0.586643 | 4.4:-18583230 | MS.gene35217:CDS |
| ACGAATCACTCAGGGTGAAG+AGG | 0.588585 | 4.4:+18583312 | None:intergenic |
| TAGTGATCGCACCATCTCAC+CGG | 0.588611 | 4.4:+18583532 | None:intergenic |
| GTCGGTAATGGCTTCAACAG+AGG | 0.589189 | 4.4:+18584703 | None:intergenic |
| GGAGGCTACTTCCTGATCAA+GGG | 0.590334 | 4.4:-18589526 | MS.gene35217:CDS |
| GATCTTCTTCTTCATCGTTG+AGG | 0.591151 | 4.4:+18590611 | None:intergenic |
| GTACCTAGCTTACATGGTGA+AGG | 0.591244 | 4.4:-18588504 | MS.gene35217:CDS |
| GATGTCATTGTCTGAAAGAG+TGG | 0.593214 | 4.4:+18585875 | None:intergenic |
| AGTTCGTTGAGGATTTCGGA+TGG | 0.593774 | 4.4:+18590589 | None:intergenic |
| ATAAATGCGAAGCATTTCGT+AGG | 0.593813 | 4.4:-18588655 | MS.gene35217:CDS |
| TAGCTCTGCTACAAATGATG+TGG | 0.594428 | 4.4:+18587223 | None:intergenic |
| GTCTTTGTGGATAAAACAGT+TGG | 0.594545 | 4.4:+18585897 | None:intergenic |
| CAGAGCTACGAAATAGAAGA+CGG | 0.594914 | 4.4:-18587208 | MS.gene35217:CDS |
| CGTGATTGCCTGATAGCTCA+CGG | 0.596157 | 4.4:-18583359 | MS.gene35217:CDS |
| AAGAGCAGGTATTTCTGAAG+AGG | 0.596444 | 4.4:-18588955 | MS.gene35217:CDS |
| TATCTTCGCCGAGTTCGTTG+AGG | 0.597949 | 4.4:+18590578 | None:intergenic |
| GAGGACTTCAAGACTGCTTG+GGG | 0.598252 | 4.4:-18586136 | MS.gene35217:CDS |
| TGTCCAGGAGTTTGTCGTGA+GGG | 0.601258 | 4.4:+18584800 | None:intergenic |
| TACTAACAACCAAGAGTGGA+CGG | 0.601761 | 4.4:+18586254 | None:intergenic |
| GCACTCGTCCATAGATTCTG+CGG | 0.603702 | 4.4:+18588577 | None:intergenic |
| GTGATCTCACTGTTACGCCA+GGG | 0.604749 | 4.4:-18590429 | MS.gene35217:CDS |
| TCCGTTTGTAATTCCCTCCG+TGG | 0.607878 | 4.4:+18588844 | None:intergenic |
| ACTGGCCACAACAATGTCAT+CGG | 0.608049 | 4.4:+18583181 | None:intergenic |
| CCTTCACCACACCAAAACAT+AGG | 0.609051 | 4.4:+18590328 | None:intergenic |
| TGACTTTGTCTTCGGACATG+TGG | 0.610967 | 4.4:+18583474 | None:intergenic |
| TTCTTAGAAGGATCAAACCC+TGG | 0.612962 | 4.4:+18590412 | None:intergenic |
| GTGCTGTCTTCGAATGATGA+GGG | 0.614672 | 4.4:-18585428 | MS.gene35217:CDS |
| TGCGACCGGTATCTGGTGGA+CGG | 0.619004 | 4.4:-18583241 | MS.gene35217:CDS |
| AGAGTGGCGATATTATCATC+GGG | 0.621079 | 4.4:-18585523 | MS.gene35217:CDS |
| GTTTGTCGTAGCAAAGCCAA+TGG | 0.622409 | 4.4:+18585949 | None:intergenic |
| CAAACCTTACCCCAGTGAGA+AGG | 0.623788 | 4.4:+18587452 | None:intergenic |
| CTAGACACGCTAGGTTGCAG+AGG | 0.625223 | 4.4:-18590279 | MS.gene35217:CDS |
| AGATGCTTCCTAGACACGCT+AGG | 0.625587 | 4.4:-18590288 | MS.gene35217:CDS |
| AGAACTTATCTCCAAGAACT+GGG | 0.626557 | 4.4:+18584933 | None:intergenic |
| AGATTACCTATGAAGCTGGT+CGG | 0.626725 | 4.4:+18584685 | None:intergenic |
| ACAGATGAAGAGAAATAGGA+TGG | 0.628812 | 4.4:-18588888 | MS.gene35217:CDS |
| TGCAAATGTGATCTTGCGAC+CGG | 0.628861 | 4.4:-18583255 | MS.gene35217:CDS |
| GGTACAACACTCTCCTAGCA+TGG | 0.629214 | 4.4:+18585996 | None:intergenic |
| TAATGGGCAGAATGCAATTG+TGG | 0.631335 | 4.4:-18585789 | MS.gene35217:CDS |
| AACTCCTGGACAACTACTAG+AGG | 0.636159 | 4.4:-18584789 | MS.gene35217:CDS |
| TCGTCCATAGATTCTGCGGG+TGG | 0.637226 | 4.4:+18588581 | None:intergenic |
| GCATATTATCTGATGCAGGA+AGG | 0.637268 | 4.4:-18586282 | MS.gene35217:CDS |
| TCAGTACACAGGAAAGGTCG+GGG | 0.637306 | 4.4:-18588123 | MS.gene35217:CDS |
| GGAGTGATAAGTTTAAGACT+GGG | 0.637929 | 4.4:-18589684 | MS.gene35217:CDS |
| GCGGTGTGCTGATTCCGGGA+CGG | 0.638296 | 4.4:-18585501 | MS.gene35217:CDS |
| AGATGGTGAAAATTGTGGAC+TGG | 0.638877 | 4.4:-18587414 | MS.gene35217:CDS |
| AAGTACGGATTCAGTTACAT+TGG | 0.642669 | 4.4:+18587358 | None:intergenic |
| AAAGTCAAATTCAGGAACAC+CGG | 0.652540 | 4.4:-18583458 | MS.gene35217:CDS |
| TACCTCGTTGCAAAGAAGCA+CGG | 0.655926 | 4.4:+18585717 | None:intergenic |
| ACAAGTTCAGTACACAGGAA+AGG | 0.656004 | 4.4:-18588129 | MS.gene35217:CDS |
| ACAACAATGGAGGATCACAT+AGG | 0.657465 | 4.4:-18590679 | None:intergenic |
| AGACAAAGTCTTCCTAAATG+GGG | 0.658835 | 4.4:-18587270 | MS.gene35217:CDS |
| ATCAGCCGATGACATTGTTG+TGG | 0.659651 | 4.4:-18583186 | MS.gene35217:CDS |
| ATCCCACAATCAAACAGCTG+AGG | 0.660109 | 4.4:+18587335 | None:intergenic |
| AGAAGCACGGTTCATAACCA+AGG | 0.662007 | 4.4:+18585730 | None:intergenic |
| TGTGCTGTCTTCGAATGATG+AGG | 0.662109 | 4.4:-18585429 | MS.gene35217:CDS |
| GTTGGAGCAAATTTGCAGAG+TGG | 0.662192 | 4.4:-18585539 | MS.gene35217:CDS |
| TGTCGTGAGGGAAATGCGTG+TGG | 0.664417 | 4.4:+18584812 | None:intergenic |
| ATCACCGAAGGAATCGAAAG+CGG | 0.665906 | 4.4:+18590447 | None:intergenic |
| TATCTGAGACGAATCACTCA+GGG | 0.666324 | 4.4:+18583304 | None:intergenic |
| TGAACCTTACCAATATGCCA+CGG | 0.667536 | 4.4:-18590380 | MS.gene35217:CDS |
| ACAATGACATCCGATTGTCT+CGG | 0.669584 | 4.4:-18585863 | MS.gene35217:CDS |
| ATCTTGCGACCGGTATCTGG+TGG | 0.669773 | 4.4:-18583245 | MS.gene35217:CDS |
| CGTAACAGTGAGATCACCGA+AGG | 0.674189 | 4.4:+18590435 | None:intergenic |
| TGCTGTCTTCGAATGATGAG+GGG | 0.676097 | 4.4:-18585427 | MS.gene35217:CDS |
| AGATTACTAACAACCAAGAG+TGG | 0.676652 | 4.4:+18586250 | None:intergenic |
| AGGCAACAAGTTCAGTACAC+AGG | 0.677661 | 4.4:-18588134 | MS.gene35217:CDS |
| AACCGTGCTTCTTTGCAACG+AGG | 0.677944 | 4.4:-18585719 | MS.gene35217:CDS |
| CACATTCCCAAACTTAACCG+TGG | 0.682482 | 4.4:+18590363 | None:intergenic |
| GGATCTCATCGATTATGGAG+AGG | 0.689075 | 4.4:-18588729 | MS.gene35217:CDS |
| TGCAGGCATCCTTCTCACTG+GGG | 0.689696 | 4.4:-18587461 | MS.gene35217:intron |
| ACGAACGAGTATACAACGGG+AGG | 0.689778 | 4.4:-18583556 | MS.gene35217:CDS |
| TTGTCCAGGAGTTTGTCGTG+AGG | 0.693746 | 4.4:+18584799 | None:intergenic |
| ATGATACTATGACCGTTCTG+GGG | 0.703583 | 4.4:-18587298 | MS.gene35217:CDS |
| GGTGACTGTGAATTTGACCA+TGG | 0.715593 | 4.4:-18589547 | MS.gene35217:CDS |
| TCTCTTTGCATCCATCCGTG+AGG | 0.721646 | 4.4:-18588684 | MS.gene35217:CDS |
| GGGAACGAACGAGTATACAA+CGG | 0.731907 | 4.4:-18583560 | MS.gene35217:CDS |
| TGGCTGAATTAAGAAGAACA+AGG | 0.738169 | 4.4:-18588154 | MS.gene35217:CDS |
| AAATGCGAAGCATTTCGTAG+GGG | 0.740610 | 4.4:-18588653 | MS.gene35217:CDS |
| GTGGCGATATTATCATCGGG+CGG | 0.751163 | 4.4:-18585520 | MS.gene35217:CDS |
| ATTGGTGGAAGGTTCCACGG+AGG | 0.762849 | 4.4:-18588858 | MS.gene35217:CDS |
| GACTGTGAATTTGACCATGG+AGG | 0.784934 | 4.4:-18589544 | MS.gene35217:CDS |
| GTATTGATCGAAGAACATGA+CGG | 0.801822 | 4.4:+18590528 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18583100 | 18590695 | 18583100 | ID=MS.gene35217 |
| chr4.4 | mRNA | 18583100 | 18590695 | 18583100 | ID=MS.gene35217.t1;Parent=MS.gene35217 |
| chr4.4 | exon | 18590237 | 18590695 | 18590237 | ID=MS.gene35217.t1.exon1;Parent=MS.gene35217.t1 |
| chr4.4 | CDS | 18590237 | 18590695 | 18590237 | ID=cds.MS.gene35217.t1;Parent=MS.gene35217.t1 |
| chr4.4 | exon | 18589516 | 18589728 | 18589516 | ID=MS.gene35217.t1.exon2;Parent=MS.gene35217.t1 |
| chr4.4 | CDS | 18589516 | 18589728 | 18589516 | ID=cds.MS.gene35217.t1;Parent=MS.gene35217.t1 |
| chr4.4 | exon | 18588110 | 18588990 | 18588110 | ID=MS.gene35217.t1.exon3;Parent=MS.gene35217.t1 |
| chr4.4 | CDS | 18588110 | 18588990 | 18588110 | ID=cds.MS.gene35217.t1;Parent=MS.gene35217.t1 |
| chr4.4 | exon | 18587187 | 18587478 | 18587187 | ID=MS.gene35217.t1.exon4;Parent=MS.gene35217.t1 |
| chr4.4 | CDS | 18587187 | 18587478 | 18587187 | ID=cds.MS.gene35217.t1;Parent=MS.gene35217.t1 |
| chr4.4 | exon | 18585397 | 18586341 | 18585397 | ID=MS.gene35217.t1.exon5;Parent=MS.gene35217.t1 |
| chr4.4 | CDS | 18585397 | 18586341 | 18585397 | ID=cds.MS.gene35217.t1;Parent=MS.gene35217.t1 |
| chr4.4 | exon | 18584692 | 18584963 | 18584692 | ID=MS.gene35217.t1.exon6;Parent=MS.gene35217.t1 |
| chr4.4 | CDS | 18584692 | 18584963 | 18584692 | ID=cds.MS.gene35217.t1;Parent=MS.gene35217.t1 |
| chr4.4 | exon | 18583100 | 18583601 | 18583100 | ID=MS.gene35217.t1.exon7;Parent=MS.gene35217.t1 |
| chr4.4 | CDS | 18583100 | 18583601 | 18583100 | ID=cds.MS.gene35217.t1;Parent=MS.gene35217.t1 |
| Gene Sequence |
| Protein sequence |