Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08574.t1 | XP_003606505.2 | 98.8 | 820 | 10 | 0 | 1 | 820 | 1 | 820 | 0.00E+00 | 1608.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08574.t1 | Q8RWZ7 | 79.1 | 819 | 165 | 3 | 1 | 815 | 1 | 817 | 0.0e+00 | 1313.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08574.t1 | G7JRI0 | 98.8 | 820 | 10 | 0 | 1 | 820 | 1 | 820 | 0.0e+00 | 1608.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene08574 | 0.811924 | 5.49E-51 | -1.69E-46 |
| MS.gene050297 | MS.gene08574 | 0.828017 | 1.14E-54 | -1.69E-46 |
| MS.gene051067 | MS.gene08574 | 0.847918 | 8.53E-60 | -1.69E-46 |
| MS.gene059300 | MS.gene08574 | 0.805489 | 1.30E-49 | -1.69E-46 |
| MS.gene061260 | MS.gene08574 | 0.802275 | 6.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50737 | MS.gene08574 | PPI |
| MS.gene08574 | MS.gene23322 | PPI |
| MS.gene003676 | MS.gene08574 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08574.t1 | MTR_4g061090 | 98.780 | 820 | 10 | 0 | 1 | 820 | 1 | 820 | 0.0 | 1681 |
| MS.gene08574.t1 | MTR_2g093210 | 85.871 | 821 | 112 | 2 | 1 | 820 | 1 | 818 | 0.0 | 1479 |
| MS.gene08574.t1 | MTR_2g093210 | 86.287 | 773 | 102 | 2 | 49 | 820 | 9 | 778 | 0.0 | 1399 |
| MS.gene08574.t1 | MTR_2g093210 | 84.454 | 669 | 100 | 2 | 1 | 668 | 1 | 666 | 0.0 | 1184 |
| MS.gene08574.t1 | MTR_4g071070 | 62.515 | 811 | 301 | 2 | 9 | 819 | 12 | 819 | 0.0 | 1055 |
| MS.gene08574.t1 | MTR_3g112500 | 60.028 | 723 | 286 | 2 | 11 | 732 | 1 | 721 | 0.0 | 904 |
| MS.gene08574.t1 | MTR_2g093210 | 82.975 | 511 | 83 | 2 | 1 | 510 | 1 | 508 | 0.0 | 879 |
| MS.gene08574.t1 | MTR_2g438500 | 61.818 | 55 | 21 | 0 | 1 | 55 | 1 | 55 | 5.94e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08574.t1 | AT2G28520 | 79.121 | 819 | 165 | 3 | 1 | 815 | 1 | 817 | 0.0 | 1336 |
| MS.gene08574.t1 | AT4G39080 | 63.300 | 812 | 291 | 5 | 11 | 819 | 14 | 821 | 0.0 | 1065 |
| MS.gene08574.t1 | AT2G21410 | 61.823 | 812 | 302 | 6 | 11 | 819 | 15 | 821 | 0.0 | 1056 |
Find 174 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCCATTGAGTTTGTTCT+TGG | 0.159404 | 4.1:-38176390 | MS.gene08574:CDS |
| TGAAGTTTCTTTAATATAAA+AGG | 0.184942 | 4.1:+38176925 | None:intergenic |
| ATCTTCGACTTTGGGCATTA+AGG | 0.218922 | 4.1:-38176344 | MS.gene08574:intron |
| AGCTTTATGGAGATGTTATT+TGG | 0.240092 | 4.1:-38178870 | MS.gene08574:CDS |
| GCATCTACAATTTCTTGATA+TGG | 0.247157 | 4.1:+38179614 | None:intergenic |
| ATGAAGATGTCCATTCTATT+TGG | 0.261369 | 4.1:-38177434 | MS.gene08574:CDS |
| CCAGCGACTAGGAAGCTTTA+TGG | 0.261951 | 4.1:-38178883 | MS.gene08574:intron |
| CTGAAAATTTGTGAAGCTTT+TGG | 0.275431 | 4.1:-38181030 | MS.gene08574:CDS |
| TATTTCAATGCTCGTTTCTT+TGG | 0.281066 | 4.1:-38177377 | MS.gene08574:CDS |
| ATCGCGCCTTGCTGACTTAG+AGG | 0.286780 | 4.1:-38180206 | MS.gene08574:CDS |
| TTCATGCCCTGCGTCTTCAC+TGG | 0.297238 | 4.1:-38174532 | MS.gene08574:CDS |
| TTGGCAGCTCACTGGATATA+AGG | 0.301774 | 4.1:-38177358 | MS.gene08574:intron |
| CAGCATCATATCTTCGACTT+TGG | 0.306552 | 4.1:-38176353 | MS.gene08574:CDS |
| AGATTTCAAGGACGCAATTA+TGG | 0.322855 | 4.1:-38176516 | MS.gene08574:CDS |
| TTGGTGAGAATGAGTTGTTC+TGG | 0.332655 | 4.1:-38177107 | MS.gene08574:CDS |
| TTCTTTAATATAAAAGGCTT+TGG | 0.332992 | 4.1:+38176931 | None:intergenic |
| CACCGAATCATCACCTATTT+AGG | 0.336677 | 4.1:-38185605 | MS.gene08574:CDS |
| TGGGATTAGGCATCGGAATA+AGG | 0.347557 | 4.1:-38180170 | MS.gene08574:CDS |
| TTAAGCCCCTTTGACAATCT+TGG | 0.349079 | 4.1:-38177126 | MS.gene08574:CDS |
| TAGGAGGTCATTTAGCAAAA+TGG | 0.353163 | 4.1:-38180135 | MS.gene08574:CDS |
| TTACTTATATCTTCAGGAAC+AGG | 0.356092 | 4.1:+38180994 | None:intergenic |
| CTTTATTGACCTGATCCATT+AGG | 0.359465 | 4.1:+38182279 | None:intergenic |
| CCTTTCAAACCTGAGAACTT+TGG | 0.360456 | 4.1:+38181319 | None:intergenic |
| CTTTGTTTACTTATATCTTC+AGG | 0.370890 | 4.1:+38180988 | None:intergenic |
| AGCATCATATCTTCGACTTT+GGG | 0.372911 | 4.1:-38176352 | MS.gene08574:CDS |
| TTGCCTGCTGCTTGGAGCAT+TGG | 0.373696 | 4.1:-38179346 | MS.gene08574:CDS |
| ACCGGCTGATGAGCAAATTA+TGG | 0.379432 | 4.1:-38181252 | MS.gene08574:CDS |
| GAAAGTCCTGCTACTAGCTT+GGG | 0.380018 | 4.1:-38176201 | MS.gene08574:CDS |
| CAACTTTGGATGCTGGGATT+AGG | 0.380654 | 4.1:-38180183 | MS.gene08574:CDS |
| ACCATACTTGGAGTGGCCTT+TGG | 0.387768 | 4.1:+38177082 | None:intergenic |
| CAGCTGGGATCCACACCAAA+TGG | 0.388952 | 4.1:+38177500 | None:intergenic |
| TGCTGACTTAGAGGCAACTT+TGG | 0.394715 | 4.1:-38180197 | MS.gene08574:CDS |
| TGCGGTGATGTTTGGCGACT+GGG | 0.396749 | 4.1:-38179379 | MS.gene08574:CDS |
| TGTAAATCATTATATGATAA+AGG | 0.396986 | 4.1:+38177154 | None:intergenic |
| CAGTTCTCTCTCTTCTGAAA+TGG | 0.400929 | 4.1:+38181591 | None:intergenic |
| TTGCGGTGATGTTTGGCGAC+TGG | 0.401761 | 4.1:-38179380 | MS.gene08574:CDS |
| CCTGGTTAACAAATGTTCTC+TGG | 0.402153 | 4.1:+38183784 | None:intergenic |
| GTTAAGGTGGCAAAGGAAAA+AGG | 0.402739 | 4.1:+38174461 | None:intergenic |
| CATGGAATTTGCCTGCTGCT+TGG | 0.408029 | 4.1:-38179354 | MS.gene08574:CDS |
| CCCTTCTCATTGTTGTCAAG+TGG | 0.418217 | 4.1:-38177197 | MS.gene08574:CDS |
| AAGACCGAGTTGGCCTAAAT+AGG | 0.420717 | 4.1:+38185592 | None:intergenic |
| AAGAAAGCTACGGTTCCTAA+TGG | 0.421538 | 4.1:-38182294 | MS.gene08574:CDS |
| TTATAAATCTTAAACCAGAT+TGG | 0.422718 | 4.1:+38181360 | None:intergenic |
| TTTGTACAGGAAACGATGCC+TGG | 0.425553 | 4.1:-38181398 | MS.gene08574:intron |
| GTTCAAAATTGTTCTGCAAA+AGG | 0.425950 | 4.1:-38181980 | MS.gene08574:intron |
| TTTGTAAATCCAAAGTTCTC+AGG | 0.426855 | 4.1:-38181328 | MS.gene08574:CDS |
| CAAGTGGTGTACTGGCTCTC+AGG | 0.427335 | 4.1:-38177181 | MS.gene08574:CDS |
| ATTGTTGTCAAGTGGTGTAC+TGG | 0.431280 | 4.1:-38177189 | MS.gene08574:CDS |
| AATCTACAATGAATTCTTCT+CGG | 0.431483 | 4.1:-38178796 | MS.gene08574:CDS |
| TGAACGACTTCCACGCCAGC+TGG | 0.432096 | 4.1:+38177484 | None:intergenic |
| ATAATAGTTGTGTAAACTGC+TGG | 0.436616 | 4.1:+38179417 | None:intergenic |
| TCATGCCCTGCGTCTTCACT+GGG | 0.437229 | 4.1:-38174531 | MS.gene08574:CDS |
| TGGTGAGAATGAGTTGTTCT+GGG | 0.439666 | 4.1:-38177106 | MS.gene08574:CDS |
| AGCGGATCTTGAGGTTGAAC+CGG | 0.441981 | 4.1:-38176475 | MS.gene08574:CDS |
| CCATCAAAATCTAACCAATC+TGG | 0.443170 | 4.1:-38181374 | MS.gene08574:CDS |
| ATGATATTATAGAGATTTCA+AGG | 0.443554 | 4.1:-38176528 | MS.gene08574:intron |
| CAATCTTATCATTCGGTTAG+TGG | 0.444110 | 4.1:-38174621 | MS.gene08574:CDS |
| TGAAAGGAAGCTCAGCAATC+AGG | 0.445908 | 4.1:-38179310 | MS.gene08574:intron |
| CCTTCATTCAATGGATGCAC+TGG | 0.450088 | 4.1:-38179678 | MS.gene08574:CDS |
| ATGGATCAGGTCAATAAAGC+TGG | 0.450542 | 4.1:-38182275 | MS.gene08574:CDS |
| AATCTTATCATTCGGTTAGT+GGG | 0.451403 | 4.1:-38174620 | MS.gene08574:CDS |
| TGATGTTGCCTGGCAGAATC+CGG | 0.452630 | 4.1:+38176456 | None:intergenic |
| TGGCTCTAATTGCAGTTCCA+TGG | 0.455979 | 4.1:-38176963 | MS.gene08574:CDS |
| ATGTTTGGCGACTGGGGTCA+TGG | 0.458466 | 4.1:-38179372 | MS.gene08574:CDS |
| CCAGAGAACATTTGTTAACC+AGG | 0.459096 | 4.1:-38183784 | MS.gene08574:intron |
| TAGAGGCAACTTTGGATGCT+GGG | 0.459606 | 4.1:-38180189 | MS.gene08574:CDS |
| GATACCCAAATAGACTGTTA+AGG | 0.471115 | 4.1:+38177223 | None:intergenic |
| ACTCAATGGAGTGAATCATT+TGG | 0.472059 | 4.1:+38176400 | None:intergenic |
| CTGGTTTAAGATTTATAAGC+GGG | 0.472941 | 4.1:-38181355 | MS.gene08574:CDS |
| TTCTCACCAAGATTGTCAAA+GGG | 0.473262 | 4.1:+38177120 | None:intergenic |
| TACAGAGAACCATACCCATT+TGG | 0.473631 | 4.1:-38177515 | MS.gene08574:CDS |
| CAAGAAATTGTAGATGCATA+CGG | 0.479666 | 4.1:-38179608 | MS.gene08574:CDS |
| ATTAAAGAAACTTCATAATG+AGG | 0.480131 | 4.1:-38176917 | MS.gene08574:intron |
| ATTAGGGATGCACATACTAC+TGG | 0.480874 | 4.1:-38177548 | MS.gene08574:intron |
| GGTATGACAATCTTATCATT+CGG | 0.482846 | 4.1:-38174628 | MS.gene08574:CDS |
| GGCTTTGGAAAGAGCATCCA+TGG | 0.483435 | 4.1:+38176946 | None:intergenic |
| TTAGAGGCAACTTTGGATGC+TGG | 0.483664 | 4.1:-38180190 | MS.gene08574:CDS |
| AGAAAGTCCTGCTACTAGCT+TGG | 0.483862 | 4.1:-38176202 | MS.gene08574:CDS |
| TTGAACGAATGTCATCTTCT+CGG | 0.485629 | 4.1:+38185652 | None:intergenic |
| CCAGTGCATCCATTGAATGA+AGG | 0.486632 | 4.1:+38179678 | None:intergenic |
| GGCCTAAATAGGTGATGATT+CGG | 0.486922 | 4.1:+38185603 | None:intergenic |
| GGATCTTATTTCAACTGAGA+TGG | 0.488910 | 4.1:-38181231 | MS.gene08574:intron |
| ATCTTGAGAGAGTTTAGAAA+GGG | 0.494160 | 4.1:+38177455 | None:intergenic |
| CCAAAGTTCTCAGGTTTGAA+AGG | 0.494490 | 4.1:-38181319 | MS.gene08574:CDS |
| AATAAATTCTACCACGGTGA+TGG | 0.495855 | 4.1:-38174497 | MS.gene08574:CDS |
| CTTGCAATCAGATACATACT+TGG | 0.497578 | 4.1:-38182231 | MS.gene08574:CDS |
| TCCGATATTTGCAAAAGCAC+AGG | 0.497930 | 4.1:-38179885 | MS.gene08574:intron |
| TATCTGATTGCAAGACAGAA+TGG | 0.498874 | 4.1:+38182240 | None:intergenic |
| AAATTCCTCATGATGTTGCC+TGG | 0.502941 | 4.1:+38176446 | None:intergenic |
| GCTACGGTTCCTAATGGATC+AGG | 0.503423 | 4.1:-38182288 | MS.gene08574:CDS |
| CATCTTGAGAGAGTTTAGAA+AGG | 0.509747 | 4.1:+38177454 | None:intergenic |
| TCGTTTCTTTGGCAGCTCAC+TGG | 0.510044 | 4.1:-38177366 | MS.gene08574:CDS |
| CATTTCAGAAGAGAGAGAAC+TGG | 0.510467 | 4.1:-38181590 | MS.gene08574:CDS |
| GACGCACCAAATATGTGAAA+AGG | 0.511111 | 4.1:+38178771 | None:intergenic |
| CATTTGGTGTGGATCCCAGC+TGG | 0.512737 | 4.1:-38177499 | MS.gene08574:CDS |
| GAACCAATGCTCCAAGCAGC+AGG | 0.514977 | 4.1:+38179343 | None:intergenic |
| ATTCGGTGAGCGGACTCAGC+GGG | 0.515932 | 4.1:+38185620 | None:intergenic |
| AGGTTGAACCGGATTCTGCC+AGG | 0.519264 | 4.1:-38176464 | MS.gene08574:CDS |
| TTATGGAGATGTTATTTGGT+GGG | 0.523066 | 4.1:-38178866 | MS.gene08574:CDS |
| ATGTACCACACCAAATAGAA+TGG | 0.523321 | 4.1:+38177424 | None:intergenic |
| TAACAAATGTTCTCTGGAAG+GGG | 0.525703 | 4.1:+38183790 | None:intergenic |
| TACATACTTGGAGGATATAG+AGG | 0.538894 | 4.1:-38182219 | MS.gene08574:intron |
| ATTCTCACCAAGATTGTCAA+AGG | 0.538979 | 4.1:+38177119 | None:intergenic |
| AGCTGGGATCCACACCAAAT+GGG | 0.540431 | 4.1:+38177501 | None:intergenic |
| TGGTGTGGTACATATGAACT+TGG | 0.541184 | 4.1:-38177414 | MS.gene08574:CDS |
| TTAACAAATGTTCTCTGGAA+GGG | 0.543625 | 4.1:+38183789 | None:intergenic |
| TCCATAATTTGCTCATCAGC+CGG | 0.544690 | 4.1:+38181251 | None:intergenic |
| ATATGGATTTGTGAAACTGT+TGG | 0.545071 | 4.1:+38179631 | None:intergenic |
| AGAACCAAGAACAAACTCAA+TGG | 0.546926 | 4.1:+38176386 | None:intergenic |
| GCAATCAGATACATACTTGG+AGG | 0.551244 | 4.1:-38182228 | MS.gene08574:CDS |
| CTGTTGGTTCTAAAATATGT+AGG | 0.554704 | 4.1:+38179647 | None:intergenic |
| TACTTATATCTTCAGGAACA+GGG | 0.558496 | 4.1:+38180995 | None:intergenic |
| GGATCCACACCAAATGGGTA+TGG | 0.561377 | 4.1:+38177506 | None:intergenic |
| AATAAGGCTCTATCTTCTGT+AGG | 0.561847 | 4.1:-38180154 | MS.gene08574:CDS |
| GACACCTGCATGAACTATCT+CGG | 0.562857 | 4.1:+38178736 | None:intergenic |
| TTTGACAGCAATTCTCAAGT+GGG | 0.564303 | 4.1:-38179707 | MS.gene08574:CDS |
| ATGAGTTGTTCTGGGGCCAA+AGG | 0.565727 | 4.1:-38177098 | MS.gene08574:CDS |
| CCACTTGACAACAATGAGAA+GGG | 0.565912 | 4.1:+38177197 | None:intergenic |
| GTAAACAAAGGCAAATAACC+CGG | 0.566335 | 4.1:-38180975 | MS.gene08574:CDS |
| TACCTCTGAAGCGGATCTTG+AGG | 0.567052 | 4.1:-38176484 | MS.gene08574:CDS |
| AAGAAATTGTAGATGCATAC+GGG | 0.568650 | 4.1:-38179607 | MS.gene08574:intron |
| GTTAACAAATGTTCTCTGGA+AGG | 0.571175 | 4.1:+38183788 | None:intergenic |
| ATCTGATTGCAAGACAGAAT+GGG | 0.571405 | 4.1:+38182241 | None:intergenic |
| ATCACCTATTTAGGCCAACT+CGG | 0.571758 | 4.1:-38185596 | MS.gene08574:CDS |
| TTTATGGAGATGTTATTTGG+TGG | 0.575690 | 4.1:-38178867 | MS.gene08574:CDS |
| TATGATTTCTGCCAGCGACT+AGG | 0.579385 | 4.1:-38178894 | MS.gene08574:intron |
| TGGATGCTGGGATTAGGCAT+CGG | 0.580692 | 4.1:-38180177 | MS.gene08574:CDS |
| TGGTTCTTATAGCACATGAA+AGG | 0.580897 | 4.1:-38179326 | MS.gene08574:CDS |
| GAAAAGCATATTGCCTCTTG+TGG | 0.583078 | 4.1:+38181283 | None:intergenic |
| GAACGACTTCCACGCCAGCT+GGG | 0.584129 | 4.1:+38177485 | None:intergenic |
| TGGATCAGGTCAATAAAGCT+GGG | 0.585348 | 4.1:-38182274 | MS.gene08574:CDS |
| ATCCTCGGTTAAGGTGGCAA+AGG | 0.586241 | 4.1:+38174454 | None:intergenic |
| TTGACAGCAATTCTCAAGTG+GGG | 0.586879 | 4.1:-38179706 | MS.gene08574:CDS |
| TTCAGAAGAGAGAGAACTGG+AGG | 0.587684 | 4.1:-38181587 | MS.gene08574:CDS |
| TTCTGCCAGGCAACATCATG+AGG | 0.588694 | 4.1:-38176451 | MS.gene08574:CDS |
| ATCTTATCATTCGGTTAGTG+GGG | 0.588871 | 4.1:-38174619 | MS.gene08574:CDS |
| ATAGGTGATGATTCGGTGAG+CGG | 0.591098 | 4.1:+38185610 | None:intergenic |
| ACCACTTGACAACAATGAGA+AGG | 0.593169 | 4.1:+38177196 | None:intergenic |
| AGGTCATTTAGCAAAATGGA+TGG | 0.593655 | 4.1:-38180131 | MS.gene08574:CDS |
| GAACGCATGAGATCCATTGA+AGG | 0.595669 | 4.1:+38185674 | None:intergenic |
| ATGTTGTTTCGTGCCACAAG+AGG | 0.596841 | 4.1:-38181296 | MS.gene08574:CDS |
| TTCCTTTGCCACCTTAACCG+AGG | 0.599921 | 4.1:-38174456 | MS.gene08574:CDS |
| TGACAGCAATTCTCAAGTGG+GGG | 0.606342 | 4.1:-38179705 | MS.gene08574:CDS |
| GTCCTAGGTAAGAAGAGAGA+AGG | 0.607614 | 4.1:-38179978 | MS.gene08574:intron |
| AACCTCAAGATCCGCTTCAG+AGG | 0.611912 | 4.1:+38176482 | None:intergenic |
| AATGTCTTGTTGGAGAGGGC+TGG | 0.614708 | 4.1:-38179910 | MS.gene08574:CDS |
| AAGGCTCTATCTTCTGTAGG+AGG | 0.618034 | 4.1:-38180151 | MS.gene08574:CDS |
| CAGAAATGTCAAGAAAGCTA+CGG | 0.623573 | 4.1:-38182304 | MS.gene08574:CDS |
| TTTCAAAATAAATTCTACCA+CGG | 0.624068 | 4.1:-38174503 | MS.gene08574:CDS |
| TTCAACCCAGTGAAGACGCA+GGG | 0.627548 | 4.1:+38174526 | None:intergenic |
| GAAATTGAAGAAGACCGAGT+TGG | 0.632332 | 4.1:+38185582 | None:intergenic |
| ATTCAACCCAGTGAAGACGC+AGG | 0.632811 | 4.1:+38174525 | None:intergenic |
| CTGAAGATATAAGTAAACAA+AGG | 0.646221 | 4.1:-38180987 | MS.gene08574:CDS |
| TCTGGTTTAAGATTTATAAG+CGG | 0.646579 | 4.1:-38181356 | MS.gene08574:CDS |
| TAAACAAAGGCAAATAACCC+GGG | 0.647105 | 4.1:-38180974 | MS.gene08574:CDS |
| TTTAGCAAAATGGATGGACA+TGG | 0.648626 | 4.1:-38180125 | MS.gene08574:intron |
| AAAGTCCTGCTACTAGCTTG+GGG | 0.651364 | 4.1:-38176200 | MS.gene08574:CDS |
| GCGGTGATGTTTGGCGACTG+GGG | 0.651684 | 4.1:-38179378 | MS.gene08574:CDS |
| TTGGTTCTAAAATATGTAGG+TGG | 0.652091 | 4.1:+38179650 | None:intergenic |
| TGTGCTTAATACCTCTGAAG+CGG | 0.653524 | 4.1:-38176493 | MS.gene08574:CDS |
| AATGCCGAGATAGTTCATGC+AGG | 0.655608 | 4.1:-38178740 | MS.gene08574:intron |
| TCTCACCAAGATTGTCAAAG+GGG | 0.658739 | 4.1:+38177121 | None:intergenic |
| GATGTCCATTCTATTTGGTG+TGG | 0.659577 | 4.1:-38177429 | MS.gene08574:CDS |
| GGTGTGGATCCCAGCTGGCG+TGG | 0.661930 | 4.1:-38177494 | MS.gene08574:CDS |
| GGTGTGGTACATATGAACTT+GGG | 0.664543 | 4.1:-38177413 | MS.gene08574:CDS |
| GGTGAGAATGAGTTGTTCTG+GGG | 0.669382 | 4.1:-38177105 | MS.gene08574:CDS |
| TGAGGAATTTAATTTCAGTG+AGG | 0.676594 | 4.1:-38176433 | MS.gene08574:CDS |
| AGAACCATACCCATTTGGTG+TGG | 0.678548 | 4.1:-38177510 | MS.gene08574:CDS |
| AAGTTGCCTCTAAGTCAGCA+AGG | 0.680382 | 4.1:+38180200 | None:intergenic |
| GATTCGGTGAGCGGACTCAG+CGG | 0.691576 | 4.1:+38185619 | None:intergenic |
| AAGTCCTGCTACTAGCTTGG+GGG | 0.696904 | 4.1:-38176199 | MS.gene08574:intron |
| CTGTTAAGGAAAATCATCTG+CGG | 0.714419 | 4.1:+38177237 | None:intergenic |
| ACAAAGGCAAATAACCCGGG+AGG | 0.743957 | 4.1:-38180971 | MS.gene08574:intron |
| TGAACTTGTATCCATCACCG+TGG | 0.780160 | 4.1:+38174486 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 38174445 | 38185720 | 38174445 | ID=MS.gene08574 |
| chr4.1 | mRNA | 38174445 | 38185720 | 38174445 | ID=MS.gene08574.t1;Parent=MS.gene08574 |
| chr4.1 | exon | 38185577 | 38185720 | 38185577 | ID=MS.gene08574.t1.exon1;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38185577 | 38185720 | 38185577 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38183785 | 38183829 | 38183785 | ID=MS.gene08574.t1.exon2;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38183785 | 38183829 | 38183785 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38182220 | 38182339 | 38182220 | ID=MS.gene08574.t1.exon3;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38182220 | 38182339 | 38182220 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38181981 | 38182088 | 38181981 | ID=MS.gene08574.t1.exon4;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38181981 | 38182088 | 38181981 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38181534 | 38181647 | 38181534 | ID=MS.gene08574.t1.exon5;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38181534 | 38181647 | 38181534 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38181232 | 38181411 | 38181232 | ID=MS.gene08574.t1.exon6;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38181232 | 38181411 | 38181232 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38180972 | 38181109 | 38180972 | ID=MS.gene08574.t1.exon7;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38180972 | 38181109 | 38180972 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38180126 | 38180233 | 38180126 | ID=MS.gene08574.t1.exon8;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38180126 | 38180233 | 38180126 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38179886 | 38179993 | 38179886 | ID=MS.gene08574.t1.exon9;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38179886 | 38179993 | 38179886 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38179608 | 38179756 | 38179608 | ID=MS.gene08574.t1.exon10;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38179608 | 38179756 | 38179608 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38179311 | 38179464 | 38179311 | ID=MS.gene08574.t1.exon11;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38179311 | 38179464 | 38179311 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38178741 | 38178901 | 38178741 | ID=MS.gene08574.t1.exon12;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38178741 | 38178901 | 38178741 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38177359 | 38177565 | 38177359 | ID=MS.gene08574.t1.exon13;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38177359 | 38177565 | 38177359 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38177089 | 38177272 | 38177089 | ID=MS.gene08574.t1.exon14;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38177089 | 38177272 | 38177089 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38176918 | 38177001 | 38176918 | ID=MS.gene08574.t1.exon15;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38176918 | 38177001 | 38176918 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38176345 | 38176538 | 38176345 | ID=MS.gene08574.t1.exon16;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38176345 | 38176538 | 38176345 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38176200 | 38176259 | 38176200 | ID=MS.gene08574.t1.exon17;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38176200 | 38176259 | 38176200 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| chr4.1 | exon | 38174445 | 38174649 | 38174445 | ID=MS.gene08574.t1.exon18;Parent=MS.gene08574.t1 |
| chr4.1 | CDS | 38174445 | 38174649 | 38174445 | ID=cds.MS.gene08574.t1;Parent=MS.gene08574.t1 |
| Gene Sequence |
| Protein sequence |
