Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08597.t1 | KEH30062.1 | 96.6 | 846 | 29 | 0 | 1 | 846 | 1 | 846 | 0.00E+00 | 1642.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08597.t1 | Q680Q4 | 61.0 | 843 | 312 | 12 | 1 | 839 | 1 | 830 | 5.8e-296 | 1018.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08597.t1 | A0A072UK34 | 96.6 | 846 | 29 | 0 | 1 | 846 | 1 | 846 | 0.0e+00 | 1642.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene08597.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051209 | MS.gene08597 | 0.827328 | 1.66E-54 | -1.69E-46 |
| MS.gene055886 | MS.gene08597 | 0.829869 | 4.04E-55 | -1.69E-46 |
| MS.gene057174 | MS.gene08597 | 0.859504 | 3.95E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08597.t1 | MTR_4g060510 | 98.582 | 846 | 12 | 0 | 1 | 846 | 1 | 846 | 0.0 | 1718 |
| MS.gene08597.t1 | MTR_4g060510 | 98.331 | 839 | 14 | 0 | 1 | 839 | 1 | 839 | 0.0 | 1701 |
| MS.gene08597.t1 | MTR_4g060510 | 98.331 | 839 | 14 | 0 | 1 | 839 | 1 | 839 | 0.0 | 1700 |
| MS.gene08597.t1 | MTR_2g093730 | 71.838 | 838 | 224 | 6 | 2 | 836 | 3 | 831 | 0.0 | 1195 |
| MS.gene08597.t1 | MTR_5g009920 | 30.556 | 108 | 72 | 1 | 351 | 458 | 302 | 406 | 4.49e-14 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08597.t1 | AT5G60410 | 62.040 | 843 | 303 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1051 |
| MS.gene08597.t1 | AT5G60410 | 61.922 | 843 | 304 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1049 |
| MS.gene08597.t1 | AT5G60410 | 61.922 | 843 | 304 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1049 |
| MS.gene08597.t1 | AT5G60410 | 61.922 | 843 | 304 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1049 |
| MS.gene08597.t1 | AT5G60410 | 61.922 | 843 | 304 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1049 |
| MS.gene08597.t1 | AT5G60410 | 61.922 | 843 | 304 | 12 | 1 | 839 | 1 | 830 | 0.0 | 1047 |
Find 237 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCTAATGAAGATGATTT+TGG | 0.169950 | 4.1:+38624354 | MS.gene08597:CDS |
| GAAAGTGAACGTCTGGATTT+AGG | 0.177524 | 4.1:+38623727 | MS.gene08597:CDS |
| CCTCTTCTGGTCATATATTA+AGG | 0.179634 | 4.1:+38623938 | MS.gene08597:CDS |
| TTGTCTCAGTTTCCAGAATA+TGG | 0.204078 | 4.1:+38619529 | MS.gene08597:intron |
| AACCATCTGCAATATCATTT+TGG | 0.221232 | 4.1:-38624254 | None:intergenic |
| TTTCCCAACAGCATTCTTCT+TGG | 0.230199 | 4.1:-38619553 | None:intergenic |
| CTGGTTGTGGCCAACTTTAC+AGG | 0.240074 | 4.1:-38621080 | None:intergenic |
| GGATTTGGTTGCCGGTATTA+AGG | 0.261927 | 4.1:+38617327 | MS.gene08597:CDS |
| GCAAATACTTTGGCTGATTC+TGG | 0.265030 | 4.1:+38624849 | MS.gene08597:CDS |
| CGTCTGGATTTAGGGATTCT+TGG | 0.266687 | 4.1:+38623736 | MS.gene08597:CDS |
| TTTCAATCGCATCACTTCTA+TGG | 0.279502 | 4.1:+38623554 | MS.gene08597:CDS |
| CCAGATCCCAAAGCAGTTTC+GGG | 0.280923 | 4.1:-38624528 | None:intergenic |
| GCCAGATCCCAAAGCAGTTT+CGG | 0.293735 | 4.1:-38624529 | None:intergenic |
| ACTCCTTTGGAATTAAGTTT+AGG | 0.304656 | 4.1:-38623057 | None:intergenic |
| GGTGATGCTTCCACTCAAAA+TGG | 0.305594 | 4.1:+38624786 | MS.gene08597:CDS |
| ATTCTTCTTGGCCCATATTC+TGG | 0.317429 | 4.1:-38619541 | None:intergenic |
| GAAGTGATGCGATTGAAATA+AGG | 0.318290 | 4.1:-38623549 | None:intergenic |
| GAAAGAGCAGGTGGCAAAAT+TGG | 0.320071 | 4.1:+38619572 | MS.gene08597:CDS |
| CTGGTTTAAAACTTGGCATT+AGG | 0.321743 | 4.1:+38623866 | MS.gene08597:CDS |
| GGAGGAATCGCAATGGGAAT+TGG | 0.324383 | 4.1:+38623887 | MS.gene08597:CDS |
| TATACAGACCTAGCAGTTAA+TGG | 0.329641 | 4.1:+38621822 | MS.gene08597:CDS |
| CCCGAAACTGCTTTGGGATC+TGG | 0.333745 | 4.1:+38624528 | MS.gene08597:CDS |
| GTGGAAATGGATTTGGTTGC+CGG | 0.336319 | 4.1:+38617319 | None:intergenic |
| AAGAACATTTATGAATTAGA+AGG | 0.340056 | 4.1:-38624888 | None:intergenic |
| TGCTGATAGCGACAGTGATT+TGG | 0.342121 | 4.1:+38623153 | MS.gene08597:CDS |
| CACGCGTCTGTCGTTGTGTT+GGG | 0.342273 | 4.1:+38623110 | MS.gene08597:CDS |
| ATTCCAAAATCATCTTCATT+AGG | 0.342360 | 4.1:-38624357 | None:intergenic |
| CTCAGGAAAATGCAGATATC+TGG | 0.345078 | 4.1:+38619837 | MS.gene08597:intron |
| CTCGGTGGAAGTTCATGCTT+GGG | 0.346082 | 4.1:+38624327 | MS.gene08597:CDS |
| GTCATTGCCTTCTGCATCTC+AGG | 0.353133 | 4.1:+38624392 | MS.gene08597:CDS |
| ATTGGCTCCCGAAACTGCTT+TGG | 0.354081 | 4.1:+38624521 | MS.gene08597:CDS |
| TGAACGACAAGGTTCCATTC+AGG | 0.356491 | 4.1:+38621784 | MS.gene08597:CDS |
| GACAACCCATTGGCATTTGC+TGG | 0.356540 | 4.1:+38624612 | MS.gene08597:CDS |
| ATCACCATCCCGACCACTTT+CGG | 0.356985 | 4.1:-38624013 | None:intergenic |
| AAAGTGAACGTCTGGATTTA+GGG | 0.357301 | 4.1:+38623728 | MS.gene08597:CDS |
| AGTTCACAATAAAATTTATC+AGG | 0.361374 | 4.1:-38620308 | None:intergenic |
| GGCCAATGGCATCTTCCTAA+TGG | 0.367292 | 4.1:+38623757 | MS.gene08597:CDS |
| AGTGTTAACCAGGGTGGTGG+TGG | 0.369509 | 4.1:+38624042 | MS.gene08597:CDS |
| TTGGCTCCCGAAACTGCTTT+GGG | 0.370189 | 4.1:+38624522 | MS.gene08597:CDS |
| AGTGATGAGGTGCAATTAAT+AGG | 0.378729 | 4.1:-38624486 | None:intergenic |
| CAGTATAAGCCTTCGTTGTC+CGG | 0.381422 | 4.1:+38623195 | MS.gene08597:CDS |
| CATTGTCTCTGGATGGGACT+TGG | 0.386225 | 4.1:-38624824 | None:intergenic |
| ATGCCTTCCATAGGTTTCTC+TGG | 0.386479 | 4.1:-38620275 | None:intergenic |
| TGTGGAAGTACATTGGAAAC+AGG | 0.389365 | 4.1:+38619981 | MS.gene08597:CDS |
| AGTATTTGCGCCATTGTCTC+TGG | 0.389636 | 4.1:-38624835 | None:intergenic |
| GACGACTCAGCTGGTCTTGT+GGG | 0.390350 | 4.1:-38624663 | None:intergenic |
| CTTACTCTCGGAGGTGGTGC+TGG | 0.391540 | 4.1:+38624753 | MS.gene08597:CDS |
| GTTCTCTCCACGCACTGCAC+TGG | 0.391843 | 4.1:-38621607 | None:intergenic |
| CAGCACCACCTCCGAGAGTA+AGG | 0.392682 | 4.1:-38624752 | None:intergenic |
| AACACTGAAGCAAGTAAAAC+AGG | 0.397029 | 4.1:+38623822 | MS.gene08597:CDS |
| GGTCTATTAGTTGTTCGAAT+AGG | 0.398032 | 4.1:-38621997 | None:intergenic |
| ATGGTGTTTCCACTGAAGAT+TGG | 0.399962 | 4.1:+38624724 | MS.gene08597:CDS |
| CAATAAAATTTATCAGGAAC+TGG | 0.400321 | 4.1:-38620302 | None:intergenic |
| AATGCAAGGTTTGAATCTTC+CGG | 0.401374 | 4.1:-38623328 | None:intergenic |
| TGTCTCAGTTTCCAGAATAT+GGG | 0.403486 | 4.1:+38619530 | MS.gene08597:intron |
| CTGCATCAGAACCGAACAAT+TGG | 0.403934 | 4.1:-38624428 | None:intergenic |
| GAGACAACAAACACCTCTTC+TGG | 0.405142 | 4.1:+38623925 | MS.gene08597:CDS |
| TGATGGCTCTTGGCGTGTTA+AGG | 0.415872 | 4.1:+38623696 | MS.gene08597:CDS |
| TCAGTTAGGACTTTCAAAAC+AGG | 0.417332 | 4.1:+38618670 | MS.gene08597:CDS |
| GAAGAGGTGTTTGTTGTCTC+GGG | 0.417393 | 4.1:-38623922 | None:intergenic |
| CAGAAGGCGCAGTTTGCAAC+AGG | 0.417817 | 4.1:+38622274 | MS.gene08597:CDS |
| AGAAGAGGTGTTTGTTGTCT+CGG | 0.418486 | 4.1:-38623923 | None:intergenic |
| AAGTGATGCGATTGAAATAA+GGG | 0.420028 | 4.1:-38623548 | None:intergenic |
| ATTGGAATAACAACTTGTTC+AGG | 0.423238 | 4.1:-38623976 | None:intergenic |
| ACCTTGCTCATCTGAGAGAA+TGG | 0.424806 | 4.1:-38618930 | None:intergenic |
| TGAAGAAGACAATGACATAT+TGG | 0.426237 | 4.1:+38624203 | MS.gene08597:CDS |
| TCCCTTTGTACTTCTACTGC+TGG | 0.427026 | 4.1:+38623781 | MS.gene08597:CDS |
| TGGTGGTTGTTATTTGCAAT+TGG | 0.428837 | 4.1:-38624234 | None:intergenic |
| GGCTCACCGTCAGACTCCTT+TGG | 0.429043 | 4.1:-38623070 | None:intergenic |
| GGTCCAGGATTCCAATTGTT+CGG | 0.430991 | 4.1:+38624417 | MS.gene08597:CDS |
| TCGGAGCCACTGCTGCTCAT+TGG | 0.433629 | 4.1:-38623994 | None:intergenic |
| TTCTCTCCACGCACTGCACT+GGG | 0.434383 | 4.1:-38621606 | None:intergenic |
| CTCTTCTGGTCATATATTAA+GGG | 0.435745 | 4.1:+38623939 | MS.gene08597:CDS |
| GATCAAGCAAATGTCTCTAA+TGG | 0.441265 | 4.1:+38624705 | MS.gene08597:CDS |
| AAGGATGTGCTGACTCAGTT+AGG | 0.444292 | 4.1:+38618656 | MS.gene08597:CDS |
| GAGGAATCGCAATGGGAATT+GGG | 0.446679 | 4.1:+38623888 | MS.gene08597:CDS |
| GGTTCAAGAATGAAGATTGC+CGG | 0.447230 | 4.1:+38623309 | MS.gene08597:CDS |
| GCGAGCATCACATACTGTTA+AGG | 0.451776 | 4.1:-38622225 | None:intergenic |
| CTCTTACAAGATTCCTCTGC+TGG | 0.453644 | 4.1:+38624555 | MS.gene08597:CDS |
| TGCTGACTTAAACGGTGGTT+TGG | 0.454513 | 4.1:+38624587 | MS.gene08597:CDS |
| GGACCTGCTGGTTTAAAACT+TGG | 0.454520 | 4.1:+38623859 | MS.gene08597:CDS |
| TCTGCATCTCAGGCTGGTCC+AGG | 0.454585 | 4.1:+38624402 | MS.gene08597:CDS |
| TTGCCTTCTGCATCTCAGGC+TGG | 0.454882 | 4.1:+38624396 | MS.gene08597:CDS |
| GAAGTACAAAGGGATCCATT+AGG | 0.456957 | 4.1:-38623772 | None:intergenic |
| ACCTTTGTTACCTGTAAAGT+TGG | 0.457420 | 4.1:+38621070 | MS.gene08597:CDS |
| CGGACAGATGCTGACTTAAA+CGG | 0.458317 | 4.1:+38624579 | MS.gene08597:CDS |
| GCGTATGGGTCAACAATTCC+AGG | 0.461698 | 4.1:-38624291 | None:intergenic |
| CACATCTGCTCAGGTGGGTG+GGG | 0.465487 | 4.1:+38624155 | MS.gene08597:CDS |
| ATGCAGAAGGCAATGACCAC+AGG | 0.465646 | 4.1:-38624386 | None:intergenic |
| TCACCCATCAGTCGGAATAC+TGG | 0.470078 | 4.1:-38621099 | None:intergenic |
| AGGTTCCATTCAGGATTCAA+TGG | 0.470932 | 4.1:+38621793 | MS.gene08597:CDS |
| TGTAGTAGATTGAATTTGAA+AGG | 0.471804 | 4.1:-38619937 | None:intergenic |
| CAGTGGCTCCGAAAGTGGTC+GGG | 0.478789 | 4.1:+38624005 | MS.gene08597:CDS |
| TGCAGAGGCCTCTGATGCAT+TGG | 0.480231 | 4.1:+38624446 | MS.gene08597:CDS |
| AGACCTGGTTCTCAGTTGCT+TGG | 0.480715 | 4.1:+38622015 | MS.gene08597:CDS |
| AGACAATGGCGCAAATACTT+TGG | 0.481858 | 4.1:+38624839 | MS.gene08597:CDS |
| GGTTACTCCATGCCACCTCC+TGG | 0.482671 | 4.1:+38624273 | MS.gene08597:CDS |
| CGTGCAAGAGCATCTTCAAA+AGG | 0.484446 | 4.1:-38623091 | None:intergenic |
| AGATTCTGATCTTCAGCGTA+TGG | 0.484700 | 4.1:-38624306 | None:intergenic |
| AAAGAGTGAAAGTGAACGTC+TGG | 0.487302 | 4.1:+38623720 | MS.gene08597:CDS |
| GCACGCGTCTGTCGTTGTGT+TGG | 0.491160 | 4.1:+38623109 | MS.gene08597:CDS |
| AATTGGTGGATGACACGTAT+AGG | 0.495834 | 4.1:+38619589 | MS.gene08597:CDS |
| AAAACAAGAATTTGATGTTG+AGG | 0.498260 | 4.1:+38621666 | MS.gene08597:CDS |
| AGGTGAAGCCTGATGGCTCT+TGG | 0.500229 | 4.1:+38623686 | MS.gene08597:CDS |
| TGATCTAGCATCAAAGGGTC+AGG | 0.502689 | 4.1:+38619866 | MS.gene08597:CDS |
| TTTGCGCCATTGTCTCTGGA+TGG | 0.506095 | 4.1:-38624831 | None:intergenic |
| ATTGATTATTCTACTACCAA+TGG | 0.508427 | 4.1:+38624069 | MS.gene08597:CDS |
| AACTGATGTGTTGCCACACT+TGG | 0.509642 | 4.1:-38620241 | None:intergenic |
| GGAAACAGGGGATTTGATCA+AGG | 0.511350 | 4.1:+38619995 | MS.gene08597:CDS |
| GAACCGAACAATTGGAATCC+TGG | 0.511458 | 4.1:-38624420 | None:intergenic |
| GTGTTAACCAGGGTGGTGGT+GGG | 0.511734 | 4.1:+38624043 | MS.gene08597:CDS |
| AATAATGTTGATTTAGCTCG+TGG | 0.515010 | 4.1:+38624117 | MS.gene08597:CDS |
| TCTCGGTGGAAGTTCATGCT+TGG | 0.515187 | 4.1:+38624326 | MS.gene08597:CDS |
| CATTTATGAATTAGAAGGGT+CGG | 0.519992 | 4.1:-38624883 | None:intergenic |
| TACTACCAATGGAATTGAGA+TGG | 0.520220 | 4.1:+38624080 | MS.gene08597:CDS |
| AGCCACTGATCTAGCATCAA+AGG | 0.521664 | 4.1:+38619860 | MS.gene08597:CDS |
| GGAGCTAACGGTCGTGATGA+TGG | 0.522397 | 4.1:+38622036 | MS.gene08597:CDS |
| TTGCGCCATTGTCTCTGGAT+GGG | 0.523797 | 4.1:-38624830 | None:intergenic |
| TTAACACGCCAAGAGCCATC+AGG | 0.524906 | 4.1:-38623694 | None:intergenic |
| ACACATCTGCTCAGGTGGGT+GGG | 0.527629 | 4.1:+38624154 | MS.gene08597:CDS |
| TAAAATTTATCAGGAACTGG+TGG | 0.527907 | 4.1:-38620299 | None:intergenic |
| TCTCAGTTGCTTGGAGCTAA+CGG | 0.528194 | 4.1:+38622024 | MS.gene08597:CDS |
| GTTTAAAACTTGGCATTAGG+AGG | 0.528847 | 4.1:+38623869 | MS.gene08597:CDS |
| TCCAGCAGTAGAAGTACAAA+GGG | 0.531371 | 4.1:-38623782 | None:intergenic |
| AGCAGCAGTGGCTCCGAAAG+TGG | 0.531558 | 4.1:+38624000 | MS.gene08597:CDS |
| AACAATTCCAGGAGGTGGCA+TGG | 0.531645 | 4.1:-38624280 | None:intergenic |
| GCATTAGGAGGAATCGCAAT+GGG | 0.531717 | 4.1:+38623881 | MS.gene08597:CDS |
| TGAAGATGTTACAGAGGTTG+AGG | 0.533950 | 4.1:+38623666 | MS.gene08597:CDS |
| ACCACCACCCTGGTTAACAC+TGG | 0.535166 | 4.1:-38624040 | None:intergenic |
| ATTCAAACCTTGCATTCACA+TGG | 0.535289 | 4.1:+38623335 | MS.gene08597:CDS |
| TGAAAGTACCATTAACTGCT+AGG | 0.535333 | 4.1:-38621830 | None:intergenic |
| AACACATCTGCTCAGGTGGG+TGG | 0.535405 | 4.1:+38624153 | MS.gene08597:CDS |
| CATCTCCAGCAAATGCCAAT+GGG | 0.537152 | 4.1:-38624617 | None:intergenic |
| ATTTAGGGATTCTTGGCCAA+TGG | 0.537251 | 4.1:+38623743 | MS.gene08597:CDS |
| TTCAAAACAGGGAAAGAAGC+AGG | 0.537787 | 4.1:+38618682 | MS.gene08597:CDS |
| TATTATTCCAGAGAAACCTA+TGG | 0.538683 | 4.1:+38620268 | MS.gene08597:CDS |
| AATGAATCAACGGTCAAGAA+AGG | 0.539654 | 4.1:+38623386 | MS.gene08597:CDS |
| ATCAGTCGGAATACTGGTTG+TGG | 0.542117 | 4.1:-38621093 | None:intergenic |
| TGATGATCCCAGTGTTAACC+AGG | 0.542672 | 4.1:+38624032 | MS.gene08597:CDS |
| TGCGCATAACACATCTGCTC+AGG | 0.543129 | 4.1:+38624146 | MS.gene08597:CDS |
| GCTCCAAGCAACTGAGAACC+AGG | 0.545103 | 4.1:-38622018 | None:intergenic |
| GGTGGTGCTGGCGGTAGTAA+TGG | 0.547848 | 4.1:+38624765 | MS.gene08597:CDS |
| GCCACTGATCTAGCATCAAA+GGG | 0.547947 | 4.1:+38619861 | MS.gene08597:CDS |
| GCATAACACATCTGCTCAGG+TGG | 0.551045 | 4.1:+38624149 | MS.gene08597:CDS |
| TAGCGACAGTGATTTGGAAG+TGG | 0.551318 | 4.1:+38623159 | MS.gene08597:CDS |
| TGGTTGTTATTTGCAATTGG+AGG | 0.553691 | 4.1:-38624231 | None:intergenic |
| ACAACCAGTATTCCGACTGA+TGG | 0.554333 | 4.1:+38621095 | MS.gene08597:CDS |
| ATCACTGAACGGTTATGCAT+TGG | 0.555537 | 4.1:+38624503 | MS.gene08597:CDS |
| CCTTAATATATGACCAGAAG+AGG | 0.556281 | 4.1:-38623938 | None:intergenic |
| ACTGGTGGGATGCCTTCCAT+AGG | 0.557028 | 4.1:-38620284 | None:intergenic |
| TCATCTCCAGCAAATGCCAA+TGG | 0.557087 | 4.1:-38624618 | None:intergenic |
| TGGGCCAAGAAGAATGCTGT+TGG | 0.557207 | 4.1:+38619549 | MS.gene08597:CDS |
| AGAACATTTATGAATTAGAA+GGG | 0.557697 | 4.1:-38624887 | None:intergenic |
| CCCAGTGTTAACCAGGGTGG+TGG | 0.558647 | 4.1:+38624039 | MS.gene08597:CDS |
| GATCCTAAACTTAATTCCAA+AGG | 0.559168 | 4.1:+38623054 | MS.gene08597:intron |
| GCAGTGGCTCCGAAAGTGGT+CGG | 0.559727 | 4.1:+38624004 | MS.gene08597:CDS |
| GGGCCAAGAAGAATGCTGTT+GGG | 0.560934 | 4.1:+38619550 | MS.gene08597:CDS |
| TTCTGTAGGATCTCGTCGAT+CGG | 0.560941 | 4.1:+38618900 | MS.gene08597:intron |
| CACCAAAATGATATTGCAGA+TGG | 0.562331 | 4.1:+38624252 | MS.gene08597:CDS |
| GATTCTGATCTTCAGCGTAT+GGG | 0.562479 | 4.1:-38624305 | None:intergenic |
| CCACCACCCTGGTTAACACT+GGG | 0.563823 | 4.1:-38624039 | None:intergenic |
| ACAGATGCTGACTTAAACGG+TGG | 0.564719 | 4.1:+38624582 | MS.gene08597:CDS |
| AGAATCCATCTCAATTCCAT+TGG | 0.565368 | 4.1:-38624085 | None:intergenic |
| GGGTCAACAATTCCAGGAGG+TGG | 0.565780 | 4.1:-38624285 | None:intergenic |
| ACGCGTCTGTCGTTGTGTTG+GGG | 0.565862 | 4.1:+38623111 | MS.gene08597:CDS |
| AGACGACTCAGCTGGTCTTG+TGG | 0.566685 | 4.1:-38624664 | None:intergenic |
| GGCTCCGAAAGTGGTCGGGA+TGG | 0.567316 | 4.1:+38624009 | MS.gene08597:CDS |
| TTCTGGTCATATATTAAGGG+AGG | 0.568385 | 4.1:+38623942 | MS.gene08597:CDS |
| AGAGCAGGTGGCAAAATTGG+TGG | 0.568651 | 4.1:+38619575 | MS.gene08597:CDS |
| ACGATGATATACCTTAATAC+CGG | 0.569554 | 4.1:-38617338 | None:intergenic |
| TGTGGCCATTGAATCCTGAA+TGG | 0.572530 | 4.1:-38621798 | None:intergenic |
| CTGTCTCTGTGGAAGTACAT+TGG | 0.572912 | 4.1:+38619974 | MS.gene08597:CDS |
| CTCCACGCACTGCACTGGGT+TGG | 0.574223 | 4.1:-38621602 | None:intergenic |
| CTCCAGCAGTAGAAGTACAA+AGG | 0.578719 | 4.1:-38623783 | None:intergenic |
| ACCCTTTGATGCTAGATCAG+TGG | 0.579842 | 4.1:-38619862 | None:intergenic |
| TTTCCGTATAAAAGAGCTCA+AGG | 0.582643 | 4.1:+38618637 | MS.gene08597:CDS |
| TTCTGCATAGACGACTCAGC+TGG | 0.582789 | 4.1:-38624672 | None:intergenic |
| TGGTTTGGTTGACAACCCAT+TGG | 0.583485 | 4.1:+38624602 | MS.gene08597:CDS |
| TACGCTGAAGATCAGAATCT+CGG | 0.583616 | 4.1:+38624309 | MS.gene08597:CDS |
| CAAATGAACCAATGCATCAG+AGG | 0.583738 | 4.1:-38624454 | None:intergenic |
| ATCCATTAGGAAGATGCCAT+TGG | 0.587077 | 4.1:-38623759 | None:intergenic |
| AAACAACCCATGTGAATGCA+AGG | 0.588755 | 4.1:-38623342 | None:intergenic |
| GTCAGATAGTAGTAATGTGA+AGG | 0.588763 | 4.1:+38619893 | MS.gene08597:CDS |
| GAGGTTGAGGTGAAGCCTGA+TGG | 0.589171 | 4.1:+38623679 | MS.gene08597:CDS |
| TAGGCGTTCGAATTGTCAGA+AGG | 0.591663 | 4.1:+38622258 | MS.gene08597:CDS |
| TATTACCATTTATAGATGAG+TGG | 0.593609 | 4.1:+38623288 | MS.gene08597:intron |
| GATTGGACATCCCTTACTCT+CGG | 0.594442 | 4.1:+38624741 | MS.gene08597:CDS |
| GAATGCTGTTGGGAAAGAGC+AGG | 0.595394 | 4.1:+38619560 | MS.gene08597:CDS |
| TGCATAACCGTTCAGTGATG+AGG | 0.596581 | 4.1:-38624499 | None:intergenic |
| TCAACTCACAAGAGCAGACA+AGG | 0.599982 | 4.1:+38621633 | MS.gene08597:CDS |
| GTTATTCCAATGAGCAGCAG+TGG | 0.601585 | 4.1:+38623988 | MS.gene08597:CDS |
| ATTGTTCGGTTCTGATGCAG+AGG | 0.604658 | 4.1:+38624431 | MS.gene08597:CDS |
| AAAATTTATCAGGAACTGGT+GGG | 0.607402 | 4.1:-38620298 | None:intergenic |
| AAGGGATGTCCAATCTTCAG+TGG | 0.608756 | 4.1:-38624733 | None:intergenic |
| CAACCAGTATTCCGACTGAT+GGG | 0.609101 | 4.1:+38621096 | MS.gene08597:CDS |
| ATCACGCCGCATACAAAAGA+CGG | 0.610322 | 4.1:+38622188 | MS.gene08597:CDS |
| AGCATCTGTCCGTCCAGCAG+AGG | 0.610516 | 4.1:-38624568 | None:intergenic |
| CAGTTAGGACTTTCAAAACA+GGG | 0.613916 | 4.1:+38618671 | MS.gene08597:CDS |
| ACTCTCGGAGGTGGTGCTGG+CGG | 0.614564 | 4.1:+38624756 | MS.gene08597:CDS |
| GGCATTAGGAGGAATCGCAA+TGG | 0.614693 | 4.1:+38623880 | MS.gene08597:CDS |
| ACATCCCTTACTCTCGGAGG+TGG | 0.615368 | 4.1:+38624747 | MS.gene08597:CDS |
| CGCGTCTGTCGTTGTGTTGG+GGG | 0.617331 | 4.1:+38623112 | MS.gene08597:CDS |
| TGCTGTTGGGAAAGAGCAGG+TGG | 0.617341 | 4.1:+38619563 | MS.gene08597:CDS |
| TACAAGATTCCTCTGCTGGA+CGG | 0.618020 | 4.1:+38624559 | MS.gene08597:CDS |
| TTCAAACCTTGCATTCACAT+GGG | 0.620953 | 4.1:+38623336 | MS.gene08597:CDS |
| GTGGAAGTACATTGGAAACA+GGG | 0.621176 | 4.1:+38619982 | MS.gene08597:CDS |
| TGCAGAAGGCAATGACCACA+GGG | 0.622669 | 4.1:-38624385 | None:intergenic |
| ACAAAGATTCGCTGTCTCTG+TGG | 0.626008 | 4.1:+38619963 | MS.gene08597:CDS |
| CAATATGCCCACCACCACCC+TGG | 0.626286 | 4.1:-38624050 | None:intergenic |
| TCGGTGGAAGTTCATGCTTG+GGG | 0.626592 | 4.1:+38624328 | MS.gene08597:CDS |
| GCCAACTTTACAGGTAACAA+AGG | 0.626800 | 4.1:-38621071 | None:intergenic |
| TACCAACCCAGTGCAGTGCG+TGG | 0.627424 | 4.1:+38621600 | MS.gene08597:CDS |
| AGCACCACCTCCGAGAGTAA+GGG | 0.628927 | 4.1:-38624751 | None:intergenic |
| TTAATTCCAAAGGAGTCTGA+CGG | 0.634359 | 4.1:+38623064 | MS.gene08597:CDS |
| CAAGTCCCATCCAGAGACAA+TGG | 0.637497 | 4.1:+38624825 | MS.gene08597:CDS |
| GGACCAGCCTGAGATGCAGA+AGG | 0.640187 | 4.1:-38624399 | None:intergenic |
| TCCATTCTCTCAGATGAGCA+AGG | 0.640347 | 4.1:+38618929 | MS.gene08597:CDS |
| CCATGTACTCACCCATCAGT+CGG | 0.640779 | 4.1:-38621107 | None:intergenic |
| AATTGCACCTCATCACTGAA+CGG | 0.645687 | 4.1:+38624492 | MS.gene08597:CDS |
| CATAACACATCTGCTCAGGT+GGG | 0.645991 | 4.1:+38624150 | MS.gene08597:CDS |
| ATTCCAGAGAAACCTATGGA+AGG | 0.646238 | 4.1:+38620272 | MS.gene08597:CDS |
| CTGAAGCAAGTAAAACAGGA+AGG | 0.648396 | 4.1:+38623826 | MS.gene08597:CDS |
| GTGTATGCTTCTGAACGACA+AGG | 0.650450 | 4.1:+38621773 | MS.gene08597:CDS |
| TTGCGGTGAAGATGTTACAG+AGG | 0.656546 | 4.1:+38623660 | MS.gene08597:CDS |
| ACGACTCAGCTGGTCTTGTG+GGG | 0.660023 | 4.1:-38624662 | None:intergenic |
| ATTCGAACAACTAATAGACC+TGG | 0.670126 | 4.1:+38622000 | MS.gene08597:CDS |
| CTGGTACAGATGATTAATTG+CGG | 0.671508 | 4.1:+38623643 | MS.gene08597:intron |
| CACAAGAGCAGACAAGGACA+TGG | 0.672436 | 4.1:+38621639 | MS.gene08597:CDS |
| AAAACCTTACCGGACAACGA+AGG | 0.680746 | 4.1:-38623204 | None:intergenic |
| TGGAAGTACATTGGAAACAG+GGG | 0.683506 | 4.1:+38619983 | MS.gene08597:CDS |
| GCTGAAGATCAGAATCTCGG+TGG | 0.714451 | 4.1:+38624312 | MS.gene08597:CDS |
| ATGATGCAAGATGCCAAGTG+TGG | 0.722474 | 4.1:+38620228 | MS.gene08597:CDS |
| ACTGCTAGGTCTGTATACTG+TGG | 0.722592 | 4.1:-38621816 | None:intergenic |
| TGGACATCCCTTACTCTCGG+AGG | 0.740031 | 4.1:+38624744 | MS.gene08597:CDS |
| GATGATCCCAGTGTTAACCA+GGG | 0.753201 | 4.1:+38624033 | MS.gene08597:CDS |
| TATGGGTCAACAATTCCAGG+AGG | 0.767647 | 4.1:-38624288 | None:intergenic |
| GATCCCAGTGTTAACCAGGG+TGG | 0.772459 | 4.1:+38624036 | MS.gene08597:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 38617325 | 38624902 | 38617325 | ID=MS.gene08597 |
| chr4.1 | mRNA | 38617325 | 38624902 | 38617325 | ID=MS.gene08597.t1;Parent=MS.gene08597 |
| chr4.1 | exon | 38617325 | 38617348 | 38617325 | ID=MS.gene08597.t1.exon1;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38617325 | 38617348 | 38617325 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38618623 | 38618703 | 38618623 | ID=MS.gene08597.t1.exon2;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38618623 | 38618703 | 38618623 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38618908 | 38618950 | 38618908 | ID=MS.gene08597.t1.exon3;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38618908 | 38618950 | 38618908 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38619538 | 38619610 | 38619538 | ID=MS.gene08597.t1.exon4;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38619538 | 38619610 | 38619538 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38619842 | 38620016 | 38619842 | ID=MS.gene08597.t1.exon5;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38619842 | 38620016 | 38619842 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38620224 | 38620354 | 38620224 | ID=MS.gene08597.t1.exon6;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38620224 | 38620354 | 38620224 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38621049 | 38621117 | 38621049 | ID=MS.gene08597.t1.exon7;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38621049 | 38621117 | 38621049 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38621600 | 38621687 | 38621600 | ID=MS.gene08597.t1.exon8;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38621600 | 38621687 | 38621600 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38621768 | 38621843 | 38621768 | ID=MS.gene08597.t1.exon9;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38621768 | 38621843 | 38621768 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38621992 | 38622065 | 38621992 | ID=MS.gene08597.t1.exon10;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38621992 | 38622065 | 38621992 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38622188 | 38622295 | 38622188 | ID=MS.gene08597.t1.exon11;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38622188 | 38622295 | 38622188 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38623055 | 38623216 | 38623055 | ID=MS.gene08597.t1.exon12;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38623055 | 38623216 | 38623055 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38623303 | 38623407 | 38623303 | ID=MS.gene08597.t1.exon13;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38623303 | 38623407 | 38623303 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38623495 | 38623575 | 38623495 | ID=MS.gene08597.t1.exon14;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38623495 | 38623575 | 38623495 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| chr4.1 | exon | 38623652 | 38624902 | 38623652 | ID=MS.gene08597.t1.exon15;Parent=MS.gene08597.t1 |
| chr4.1 | CDS | 38623652 | 38624902 | 38623652 | ID=cds.MS.gene08597.t1;Parent=MS.gene08597.t1 |
| Gene Sequence |
| Protein sequence |
