AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene08818

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08818.t1 MTR_8g081510 99.363 471 3 0 1 471 1 471 0.0 975
MS.gene08818.t1 MTR_3g084310 93.418 471 31 0 1 471 1 471 0.0 928
MS.gene08818.t1 MTR_3g084310 93.132 364 25 0 1 364 1 364 0.0 720
MS.gene08818.t1 MTR_2g006570 64.224 464 161 1 4 462 128 591 0.0 648
MS.gene08818.t1 MTR_3g073470 63.991 461 158 2 7 462 118 575 0.0 633
MS.gene08818.t1 MTR_2g006570 64.524 420 144 1 48 462 1 420 0.0 587
MS.gene08818.t1 MTR_5g067060 58.030 467 187 5 9 469 42 505 0.0 556
MS.gene08818.t1 MTR_5g030950 58.155 466 188 4 9 469 53 516 0.0 554
MS.gene08818.t1 MTR_2g018290 57.860 458 173 5 12 461 87 532 0.0 537
MS.gene08818.t1 MTR_7g108420 47.380 439 188 9 37 462 1 409 1.71e-126 374
MS.gene08818.t1 MTR_1g073580 35.526 152 92 2 317 462 83 234 1.60e-22 96.7
MS.gene08818.t1 MTR_1g073580 44.318 88 44 2 157 244 1 83 6.84e-18 83.6
MS.gene08818.t1 MTR_3g062030 59.494 79 28 1 274 352 13 87 3.24e-21 92.8
MS.gene08818.t1 MTR_7g070020 53.659 82 28 2 336 410 1 79 7.85e-20 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene08818.t1 AT4G13930 88.747 471 53 0 1 471 1 471 0.0 889
MS.gene08818.t1 AT4G13890 78.205 468 102 0 1 468 1 468 0.0 794
MS.gene08818.t1 AT4G13890 79.284 391 81 0 1 391 1 391 0.0 674
MS.gene08818.t1 AT1G36370 62.446 466 170 1 4 464 130 595 0.0 629
MS.gene08818.t1 AT1G22020 62.069 464 171 1 4 462 134 597 0.0 623
MS.gene08818.t1 AT1G22020 62.069 464 171 1 4 462 134 597 0.0 623
MS.gene08818.t1 AT4G32520 59.570 465 169 6 3 461 77 528 0.0 567
MS.gene08818.t1 AT4G32520 59.570 465 169 6 3 461 77 528 0.0 567
MS.gene08818.t1 AT4G37930 57.692 468 191 4 9 471 52 517 0.0 565
MS.gene08818.t1 AT5G26780 56.197 468 198 4 9 471 52 517 0.0 546
MS.gene08818.t1 AT5G26780 56.197 468 198 4 9 471 52 517 0.0 546
MS.gene08818.t1 AT5G26780 54.752 484 196 6 9 471 52 533 0.0 537
MS.gene08818.t1 AT5G26780 54.752 484 196 6 9 471 52 533 0.0 537

Find 151 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCAGGCTGGCCCTTCT+TGG 0.198683 4.2:+13146690 None:intergenic
ATTTGGTATGCCTGGTTTCC+TGG 0.216412 4.2:-13145678 MS.gene08818:CDS
TGGCCCTTCTTGGGTGGTTT+AGG 0.220073 4.2:+13146700 None:intergenic
TAATCCTCATGATCGGATTA+TGG 0.228344 4.2:-13149131 MS.gene08818:CDS
CTTTGAGAGTTTGCCGTATA+AGG 0.255272 4.2:-13149026 MS.gene08818:CDS
TCGATTAGGTCGTGGATCTC+TGG 0.281015 4.2:+13149436 None:intergenic
ACTCATGGTTACTATACTTC+TGG 0.285243 4.2:-13149079 MS.gene08818:CDS
TTCTCAGGCTGGCCCTTCTT+GGG 0.286161 4.2:+13146691 None:intergenic
GAGAAGTTCTCTTCTTCATT+TGG 0.300016 4.2:-13145695 MS.gene08818:CDS
ATTGGGATTATAAACGGTTT+AGG 0.311040 4.2:-13148901 MS.gene08818:CDS
TTGGGATTATAAACGGTTTA+GGG 0.317920 4.2:-13148900 MS.gene08818:CDS
ATGGGATTGGATCTTCCTTC+AGG 0.332967 4.2:-13149112 MS.gene08818:CDS
AATCCTCATGATCGGATTAT+GGG 0.338677 4.2:-13149130 MS.gene08818:CDS
CCTTGCTGTTGCCTTGAAAC+AGG 0.346168 4.2:-13146584 MS.gene08818:CDS
TCATATCGATCCACAATCTT+GGG 0.348360 4.2:-13149215 MS.gene08818:CDS
GAAAAGGACTTTGAGAAGAT+TGG 0.349310 4.2:-13145842 MS.gene08818:CDS
TCTTCTTCATTTGGTATGCC+TGG 0.356704 4.2:-13145686 MS.gene08818:CDS
TTCATATCGATCCACAATCT+TGG 0.361702 4.2:-13149216 MS.gene08818:CDS
TAGTGGCCTTGTTGCTGCTC+AGG 0.366141 4.2:-13148828 MS.gene08818:intron
TTGTGGGATCTTCGCCCTCT+TGG 0.377790 4.2:-13146439 MS.gene08818:CDS
TTCGGAGTATTTGTTTGTTA+AGG 0.379837 4.2:+13149324 None:intergenic
CGATTAGGTCGTGGATCTCT+GGG 0.381977 4.2:+13149437 None:intergenic
TTGTTACCCCATTCGTTAAC+GGG 0.382478 4.2:+13149478 None:intergenic
TTCTAGAGGCTTGGTTGAAA+AGG 0.401166 4.2:-13145858 MS.gene08818:CDS
TAGTGCTTACCCTAGGGATT+GGG 0.404659 4.2:-13148918 MS.gene08818:CDS
ACAAGAGTTTGAGGGGTCCT+AGG 0.411398 4.2:-13146750 MS.gene08818:CDS
CTAGGGATTGGGATTATAAA+CGG 0.417514 4.2:-13148907 MS.gene08818:CDS
TTGAAACAGGCCATGTCACC+TGG 0.428213 4.2:-13146571 MS.gene08818:CDS
TGCATTGGCCTTAACTTGCT+TGG 0.435848 4.2:+13146534 None:intergenic
GGCCATGTCACCTGGGTTCA+AGG 0.436813 4.2:-13146563 MS.gene08818:CDS
GAAGGATTTCAACAAGGGCT+TGG 0.437560 4.2:-13145756 MS.gene08818:CDS
AAATACTCCGAAGGCATGCC+GGG 0.440063 4.2:-13149313 MS.gene08818:CDS
TTACCAACTCGTACTCCTCC+TGG 0.440340 4.2:+13146233 None:intergenic
TTTGTTACCCCATTCGTTAA+CGG 0.443616 4.2:+13149477 None:intergenic
GGCCATGACTTCTAGAGGCT+TGG 0.443671 4.2:-13145867 MS.gene08818:CDS
TCATGATCGGATTATGGGAT+TGG 0.447111 4.2:-13149125 MS.gene08818:CDS
AGGTGACATGGCCTGTTTCA+AGG 0.449189 4.2:+13146573 None:intergenic
GTAGTGCTTACCCTAGGGAT+TGG 0.449816 4.2:-13148919 MS.gene08818:CDS
GATAGCAGTGCCTTGGCTCC+AGG 0.451399 4.2:-13146251 MS.gene08818:CDS
CAACAGCAAGGGCACCAATC+TGG 0.454079 4.2:+13146596 None:intergenic
GGCATATGCCAAGCAAGTTA+AGG 0.458758 4.2:-13146542 MS.gene08818:CDS
TATGGATCCCGTTAACGAAT+GGG 0.460396 4.2:-13149485 MS.gene08818:CDS
CTTCGCCCTCTTGGATTGAC+TGG 0.475593 4.2:-13146430 MS.gene08818:intron
CAACAACTCACAAGAGTTTG+AGG 0.475648 4.2:-13146759 MS.gene08818:CDS
ACGGTTACCCGGCATGCCTT+CGG 0.480831 4.2:+13149306 None:intergenic
GTGGTGGTAGTGCTTACCCT+AGG 0.483011 4.2:-13148925 MS.gene08818:CDS
AAATCGTAAACTGCATTCTC+AGG 0.485003 4.2:+13146676 None:intergenic
CAAATACTCCGAAGGCATGC+CGG 0.485477 4.2:-13149314 MS.gene08818:CDS
ATTTCCAATGGCAACTGCAT+TGG 0.485964 4.2:+13146519 None:intergenic
AGTTTGAGGGGTCCTAGGGC+TGG 0.488241 4.2:-13146745 MS.gene08818:CDS
CGTAAACTGCATTCTCAGGC+TGG 0.492457 4.2:+13146680 None:intergenic
CTTCTGAAGGATTTCAACAA+GGG 0.500755 4.2:-13145761 MS.gene08818:CDS
GTCGTCGAATTCACCTTATA+CGG 0.506731 4.2:+13149013 None:intergenic
AAGGCCAATGCAGTTGCCAT+TGG 0.512235 4.2:-13146523 MS.gene08818:CDS
TCAGGCTGGCCCTTCTTGGG+TGG 0.515292 4.2:+13146694 None:intergenic
GGGCTGGAATGATCTTCTAC+AGG 0.516037 4.2:-13146729 MS.gene08818:CDS
GGGACCTAAACCACCCAAGA+AGG 0.517255 4.2:-13146704 MS.gene08818:CDS
TGAGAACCATCTTGTGTTGT+GGG 0.518139 4.2:-13146455 MS.gene08818:CDS
TCAGGTGGACATTTGACTCA+TGG 0.518530 4.2:-13149094 MS.gene08818:CDS
TGGAAATTACTTGATGAGCA+AGG 0.520445 4.2:-13146503 MS.gene08818:CDS
CGTTTATAATCCCAATCCCT+AGG 0.523617 4.2:+13148908 None:intergenic
AGGCCTAGGTTGATTATCTG+TGG 0.524395 4.2:-13148944 MS.gene08818:CDS
GTTAACGTTCAGCCTTACTC+TGG 0.524720 4.2:-13149190 MS.gene08818:CDS
GGATTTCAACAAGGGCTTGG+TGG 0.525840 4.2:-13145753 MS.gene08818:CDS
CAAGAGTTTGAGGGGTCCTA+GGG 0.529217 4.2:-13146749 MS.gene08818:CDS
GTCGTGGATCTCTGGGTCGA+CGG 0.531722 4.2:+13149444 None:intergenic
TTCGCCGGTGAACCAGAGTA+AGG 0.533517 4.2:+13149178 None:intergenic
TAGGTTGGAGGAGAAAGCGT+TGG 0.534852 4.2:-13148972 MS.gene08818:CDS
GAAGAGCGCGTGAACGGCAA+AGG 0.536667 4.2:+13149245 None:intergenic
GGAAATTACTTGATGAGCAA+GGG 0.542211 4.2:-13146502 MS.gene08818:CDS
CACAATGTCACAGTACTCAA+AGG 0.544775 4.2:+13146786 None:intergenic
ACAATGTCACAGTACTCAAA+GGG 0.547706 4.2:+13146787 None:intergenic
TGGTGGTAGTGCTTACCCTA+GGG 0.548765 4.2:-13148924 MS.gene08818:CDS
AACAACTCACAAGAGTTTGA+GGG 0.550530 4.2:-13146758 MS.gene08818:CDS
TATTGATTATGATAGGTTGG+AGG 0.550910 4.2:-13148984 MS.gene08818:CDS
TTGGCATATGCCTTGAACCC+AGG 0.551473 4.2:+13146553 None:intergenic
AAGCTTGAAGAGCGCGTGAA+CGG 0.551498 4.2:+13149239 None:intergenic
TAGAAGATCATTCCAGCCCT+AGG 0.552646 4.2:+13146733 None:intergenic
TGCCTTGAACCCAGGTGACA+TGG 0.553241 4.2:+13146561 None:intergenic
ATTGTGAGGACCACCTTGAA+GGG 0.554639 4.2:+13146621 None:intergenic
ATTCGTTACCGCCGTAGTAA+CGG 0.557823 4.2:+13149287 None:intergenic
CATATCGATCCACAATCTTG+GGG 0.560138 4.2:-13149214 MS.gene08818:CDS
TTATGGATCCCGTTAACGAA+TGG 0.563507 4.2:-13149486 MS.gene08818:CDS
GATGTTCTTTGCAGGAAACA+AGG 0.566091 4.2:-13146330 MS.gene08818:intron
TGAGGACCACCTTGAAGGGA+AGG 0.566539 4.2:+13146625 None:intergenic
CAAGGGCTTGGTGGACAACA+AGG 0.566901 4.2:-13145744 MS.gene08818:CDS
AACCAAGCCTCTAGAAGTCA+TGG 0.567694 4.2:+13145865 None:intergenic
GGTCCTCACAATCACCAGAT+TGG 0.567733 4.2:-13146610 MS.gene08818:CDS
GATTGTGAGGACCACCTTGA+AGG 0.568372 4.2:+13146620 None:intergenic
GAGAGCTTCGATGACGGCGA+AGG 0.570081 4.2:+13149354 None:intergenic
CCGCCGTAGTAACGGTTACC+CGG 0.570379 4.2:+13149295 None:intergenic
ATCTCAGATACCAGGAAACC+AGG 0.570656 4.2:+13145668 None:intergenic
ACGTTAACTCCCCAAGATTG+TGG 0.570906 4.2:+13149205 None:intergenic
CATGGTTACTATACTTCTGG+TGG 0.572834 4.2:-13149076 MS.gene08818:CDS
TTCTGGTGGGAAGAAGATCT+CGG 0.577762 4.2:-13149062 MS.gene08818:CDS
TCGTACTCCTCCTGGAGCCA+AGG 0.577883 4.2:+13146241 None:intergenic
GCTCATCAAGTAATTTCCAA+TGG 0.578871 4.2:+13146507 None:intergenic
GGAGCATGGAAAACTTCTGA+AGG 0.579867 4.2:-13145774 MS.gene08818:CDS
GTGTAAGCAGCGAAATTCGC+CGG 0.580461 4.2:+13149163 None:intergenic
CTAGAGATCCAGAAGGAGCA+TGG 0.581707 4.2:-13145788 MS.gene08818:CDS
CTGAGAACCATCTTGTGTTG+TGG 0.583570 4.2:-13146456 MS.gene08818:CDS
GGATTGGATCTTCCTTCAGG+TGG 0.584238 4.2:-13149109 MS.gene08818:CDS
ACTTCTGAAGGATTTCAACA+AGG 0.584978 4.2:-13145762 MS.gene08818:CDS
AAGGGATACAGTCTTGTCAC+TGG 0.587154 4.2:-13146484 MS.gene08818:CDS
TTCGCCGTCATCGAAGCTCT+CGG 0.587338 4.2:-13149352 MS.gene08818:CDS
TGGAATGATCTTCTACAGGA+AGG 0.588696 4.2:-13146725 MS.gene08818:CDS
TGAGTGTCACAGCACGGTGA+AGG 0.589218 4.2:+13145813 None:intergenic
GAAGATCCCACAACACAAGA+TGG 0.603113 4.2:+13146449 None:intergenic
CTGTTTCAAGGCAACAGCAA+GGG 0.603551 4.2:+13146585 None:intergenic
CCTAGGTTGATTATCTGTGG+TGG 0.604842 4.2:-13148941 MS.gene08818:CDS
AGTTCTGTTAACAGGTGCTC+CGG 0.607108 4.2:-13145888 MS.gene08818:intron
TATAAGGTGAATTCGACGAC+TGG 0.610662 4.2:-13149010 MS.gene08818:CDS
GGAATGATCTTCTACAGGAA+GGG 0.611076 4.2:-13146724 MS.gene08818:CDS
GGATACAGTCTTGTCACTGG+TGG 0.612060 4.2:-13146481 MS.gene08818:CDS
TGAGTCAAATGTCCACCTGA+AGG 0.612892 4.2:+13149097 None:intergenic
GGACCTAAACCACCCAAGAA+GGG 0.613785 4.2:-13146703 MS.gene08818:CDS
GCTCCGGCCATGACTTCTAG+AGG 0.616605 4.2:-13145872 MS.gene08818:CDS
CCGTGCTTAATCCTCATGAT+CGG 0.621696 4.2:-13149138 MS.gene08818:CDS
TGTACTTCATCTCAGATACC+AGG 0.622326 4.2:+13145660 None:intergenic
GTTTATAATCCCAATCCCTA+GGG 0.625521 4.2:+13148909 None:intergenic
AGGGATGTTGCTGATAAGTG+TGG 0.626741 4.2:-13148881 MS.gene08818:CDS
TGAAACAGGCCATGTCACCT+GGG 0.627178 4.2:-13146570 MS.gene08818:CDS
GCACCAATCTGGTGATTGTG+AGG 0.629254 4.2:+13146607 None:intergenic
AAGCCTCTAGAAGTCATGGC+CGG 0.629761 4.2:+13145869 None:intergenic
CCTGTTTCAAGGCAACAGCA+AGG 0.630010 4.2:+13146584 None:intergenic
ACTGCCGAGAGCTTCGATGA+CGG 0.631255 4.2:+13149348 None:intergenic
TTTATACCTGAGCAGCAACA+AGG 0.632475 4.2:+13148822 None:intergenic
CGGAATCGAACTCATCGCAT+CGG 0.632638 4.2:-13149389 MS.gene08818:CDS
GGTATCTGAGATGAAGTACA+AGG 0.632761 4.2:-13145657 MS.gene08818:CDS
GCTCCAGGAGGAGTACGAGT+TGG 0.634787 4.2:-13146236 MS.gene08818:intron
TCAGCCTTACTCTGGTTCAC+CGG 0.636199 4.2:-13149182 MS.gene08818:CDS
CCACCACAGATAATCAACCT+AGG 0.638606 4.2:+13148941 None:intergenic
ATGCCGGGTAACCGTTACTA+CGG 0.640626 4.2:-13149298 MS.gene08818:CDS
CTTTACCAGTCAATCCAAGA+GGG 0.641081 4.2:+13146425 None:intergenic
TTAACAAACAAATACTCCGA+AGG 0.642664 4.2:-13149322 MS.gene08818:CDS
ATGGATCCCGTTAACGAATG+GGG 0.646563 4.2:-13149484 MS.gene08818:CDS
AATCCCATAATCCGATCATG+AGG 0.648526 4.2:+13149127 None:intergenic
ATGGTTACTATACTTCTGGT+GGG 0.651704 4.2:-13149075 MS.gene08818:CDS
TCTGGGTCGACGGTTACGAG+TGG 0.653406 4.2:+13149454 None:intergenic
ATGCGATGAGTTCGATTCCG+CGG 0.660307 4.2:+13149392 None:intergenic
GAGGACCACCTTGAAGGGAA+GGG 0.667267 4.2:+13146626 None:intergenic
TGTTGACTGTGATGTTACAG+AGG 0.668976 4.2:+13146291 None:intergenic
ACAACTCACAAGAGTTTGAG+GGG 0.676117 4.2:-13146757 MS.gene08818:CDS
CCGATCATGAGGATTAAGCA+CGG 0.689739 4.2:+13149138 None:intergenic
GTTCTTTGCAGGAAACAAGG+TGG 0.691862 4.2:-13146327 MS.gene08818:intron
AGCAGTGCCTTGGCTCCAGG+AGG 0.693630 4.2:-13146248 MS.gene08818:CDS
CCTTTACCAGTCAATCCAAG+AGG 0.696201 4.2:+13146424 None:intergenic
CTAGTGTGAGTGTCACAGCA+CGG 0.697489 4.2:+13145807 None:intergenic
CCGGGTAACCGTTACTACGG+CGG 0.702920 4.2:-13149295 MS.gene08818:CDS
ACTCACACTAGAGATCCAGA+AGG 0.729137 4.2:-13145795 MS.gene08818:CDS
ATCATGAGGATTAAGCACGG+CGG 0.835014 4.2:+13149141 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCTGATTTTTAATTTAA+TGG - chr4.2:13146456-13146475 MS.gene08818:CDS 10.0%
!!! CTATTGATTTTAAAATTTTA+AGG - chr4.2:13146971-13146990 MS.gene08818:intron 10.0%
!!! TTAAAATTTTAAGGATTTTA+TGG - chr4.2:13146980-13146999 MS.gene08818:intron 10.0%
!! AAGAACATCAATAATATTTA+GGG - chr4.2:13147919-13147938 MS.gene08818:intron 15.0%
!! TAAATATTATTGATGTTCTT+GGG + chr4.2:13147919-13147938 None:intergenic 15.0%
!! TAACAAATAAAAAATGTGTA+TGG + chr4.2:13147056-13147075 None:intergenic 15.0%
!! TATGAATCTAATTAACATAA+CGG + chr4.2:13146370-13146389 None:intergenic 15.0%
!! TTGAGTAAAATATAAAACAA+AGG + chr4.2:13149215-13149234 None:intergenic 15.0%
!!! ACATTAGTATTTTACATTTA+GGG + chr4.2:13147697-13147716 None:intergenic 15.0%
!!! ATAGCAAAAGAATTTTTTAT+TGG + chr4.2:13146955-13146974 None:intergenic 15.0%
!!! ATGGATTTTATAAGATTTTA+AGG - chr4.2:13146999-13147018 MS.gene08818:intron 15.0%
!!! ATGGGATTTTAAAATTTTAA+AGG - chr4.2:13146830-13146849 MS.gene08818:intron 15.0%
!!! TACATTAGTATTTTACATTT+AGG + chr4.2:13147698-13147717 None:intergenic 15.0%
!!! TGGATTTTATAAGATTTTAA+GGG - chr4.2:13147000-13147019 MS.gene08818:intron 15.0%
!!! TTTAATAAATTGGATTTTGA+TGG + chr4.2:13147452-13147471 None:intergenic 15.0%
!!! TTTGTTTTATATTTTACTCA+AGG - chr4.2:13149214-13149233 MS.gene08818:CDS 15.0%
!!! TTTTTTTGAAAGATTTGTAA+GGG + chr4.2:13147129-13147148 None:intergenic 15.0%
!!! TTTTTTTTGAAAGATTTGTA+AGG + chr4.2:13147130-13147149 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTTGTGG+TGG - chr4.2:13147765-13147784 MS.gene08818:intron 15.0%
!! ACAAATCAAATAATACTACT+TGG + chr4.2:13149070-13149089 None:intergenic 20.0%
!! ATATGTACAATTGAATATTG+TGG + chr4.2:13147091-13147110 None:intergenic 20.0%
!! ATCATTTAAAAAAAGTCTCA+TGG + chr4.2:13147506-13147525 None:intergenic 20.0%
!! CAAGAACATCAATAATATTT+AGG - chr4.2:13147918-13147937 MS.gene08818:intron 20.0%
!! CTAAATATTATTGATGTTCT+TGG + chr4.2:13147920-13147939 None:intergenic 20.0%
!! TAATGTAAGGATTTATTAGA+AGG - chr4.2:13148210-13148229 MS.gene08818:intron 20.0%
!! TAATTTCAAACACAAAATGA+GGG + chr4.2:13147164-13147183 None:intergenic 20.0%
!! TATACAGTAACAAGATTAAA+AGG + chr4.2:13149165-13149184 None:intergenic 20.0%
!! TATGTACAATTGAATATTGT+GGG + chr4.2:13147090-13147109 None:intergenic 20.0%
!! TTAATTATGAAAAAGTCTTG+TGG + chr4.2:13147632-13147651 None:intergenic 20.0%
!!! AAAGGATTCAATGAATTTTA+GGG - chr4.2:13146848-13146867 MS.gene08818:intron 20.0%
!!! ATAATATGACTTGTTTTGTT+TGG - chr4.2:13148273-13148292 MS.gene08818:intron 20.0%
!!! ATTAGTATTTTACATTTAGG+GGG + chr4.2:13147695-13147714 None:intergenic 20.0%
!!! CATTAGTATTTTACATTTAG+GGG + chr4.2:13147696-13147715 None:intergenic 20.0%
!!! GCATATTTACAATTTTTACA+TGG + chr4.2:13149102-13149121 None:intergenic 20.0%
!!! TAAAGGATTCAATGAATTTT+AGG - chr4.2:13146847-13146866 MS.gene08818:intron 20.0%
!!! TATGGACTTAACTTTATTTT+CGG - chr4.2:13148935-13148954 MS.gene08818:CDS 20.0%
!!! TTATACACTCAAGATTTTAA+TGG - chr4.2:13146769-13146788 MS.gene08818:CDS 20.0%
!!! TTTTATTGATTATGATAGGT+TGG - chr4.2:13146149-13146168 MS.gene08818:intron 20.0%
! AATAAATCCTTACATTACCA+AGG + chr4.2:13148207-13148226 None:intergenic 25.0%
! ATGAAAAGATGAGATTTCTT+GGG + chr4.2:13147383-13147402 None:intergenic 25.0%
! CAAAATCATTCAAATTTCGA+AGG + chr4.2:13147479-13147498 None:intergenic 25.0%
! CGAAGGATTGTTTAATAAAT+TGG + chr4.2:13147462-13147481 None:intergenic 25.0%
! CTAATTTCAAACACAAAATG+AGG + chr4.2:13147165-13147184 None:intergenic 25.0%
! TACTCCTTATAGTTATACTA+TGG + chr4.2:13148147-13148166 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG + chr4.2:13148058-13148077 None:intergenic 25.0%
! TTTATATTGCGTACTATTTC+TGG - chr4.2:13148764-13148783 MS.gene08818:intron 25.0%
!! AAGGATTCAATGAATTTTAG+GGG - chr4.2:13146849-13146868 MS.gene08818:intron 25.0%
!! AAGGATTTCAAAGGATTTTA+TGG - chr4.2:13146811-13146830 MS.gene08818:intron 25.0%
!! AGGATTTCAAAGGATTTTAT+GGG - chr4.2:13146812-13146831 MS.gene08818:intron 25.0%
!! ATCGATAAACTTGTCTTTTA+AGG - chr4.2:13147728-13147747 MS.gene08818:intron 25.0%
!! CAAGTTGTTGTAAATTTTGT+TGG - chr4.2:13148988-13149007 MS.gene08818:CDS 25.0%
!!! ATTTATCACACTGACTTTTA+AGG - chr4.2:13146792-13146811 MS.gene08818:CDS 25.0%
!!! CTGGTTTTATTGATTATGAT+AGG - chr4.2:13146145-13146164 MS.gene08818:intron 25.0%
!!! GTCATTTTAAAAAAGTCTTG+AGG + chr4.2:13147548-13147567 None:intergenic 25.0%
AAAAATAAGCCAATCCAAAC+GGG + chr4.2:13147945-13147964 None:intergenic 30.0%
AAAAATTAGCCAATCCAAAC+GGG - chr4.2:13148121-13148140 MS.gene08818:intron 30.0%
AATAGTACGCAATATAAACC+AGG + chr4.2:13148762-13148781 None:intergenic 30.0%
ATCTGTTGTTAAAGGTTAAG+GGG - chr4.2:13146663-13146682 MS.gene08818:CDS 30.0%
ATTGGGATTATAAACGGTTT+AGG - chr4.2:13146235-13146254 MS.gene08818:intron 30.0%
CAAAAATAAGCCAATCCAAA+CGG + chr4.2:13147946-13147965 None:intergenic 30.0%
CAAAAATTAGCCAATCCAAA+CGG - chr4.2:13148120-13148139 MS.gene08818:intron 30.0%
CATGAAAAGATGAGATTTCT+TGG + chr4.2:13147384-13147403 None:intergenic 30.0%
CTACTTGGTAAAGAAATGAA+AGG + chr4.2:13149055-13149074 None:intergenic 30.0%
CTATGATAAACATTGATGCT+AGG - chr4.2:13147881-13147900 MS.gene08818:intron 30.0%
GATCTGTTGTTAAAGGTTAA+GGG - chr4.2:13146662-13146681 MS.gene08818:CDS 30.0%
GCATCTTAAAAAAAGTCTTG+TGG + chr4.2:13147590-13147609 None:intergenic 30.0%
GTTGGAAATCAATTTGATTG+AGG - chr4.2:13149006-13149025 MS.gene08818:CDS 30.0%
TAAGTTCTCACTAACGAAAA+TGG - chr4.2:13148002-13148021 MS.gene08818:intron 30.0%
TTAACAAACAAATACTCCGA+AGG - chr4.2:13145814-13145833 MS.gene08818:CDS 30.0%
TTCACTGTAAACAAACTATG+AGG + chr4.2:13146586-13146605 None:intergenic 30.0%
TTGGGATTATAAACGGTTTA+GGG - chr4.2:13146236-13146255 MS.gene08818:intron 30.0%
TTTATCATAGCCCAGTTTAT+AGG + chr4.2:13147871-13147890 None:intergenic 30.0%
! AACCAGGCAAGATAAATTTT+AGG + chr4.2:13148746-13148765 None:intergenic 30.0%
! GTATTGGATTAGGATTCTAT+GGG + chr4.2:13147670-13147689 None:intergenic 30.0%
! TATTGATTATGATAGGTTGG+AGG - chr4.2:13146152-13146171 MS.gene08818:intron 30.0%
! TATTTTCGGAGTCTAAACTT+GGG - chr4.2:13148949-13148968 MS.gene08818:CDS 30.0%
! TGTATTGGATTAGGATTCTA+TGG + chr4.2:13147671-13147690 None:intergenic 30.0%
! TTATTGATGTTCTTGGGTTT+TGG + chr4.2:13147913-13147932 None:intergenic 30.0%
! TTATTTTCGGAGTCTAAACT+TGG - chr4.2:13148948-13148967 MS.gene08818:CDS 30.0%
! TTCGGAGTATTTGTTTGTTA+AGG + chr4.2:13145815-13145834 None:intergenic 30.0%
! TTGTCTCAAAGCTTTTCTTA+CGG - chr4.2:13148247-13148266 MS.gene08818:intron 30.0%
! TTGTTGTTATCTATTCCATC+TGG - chr4.2:13146640-13146659 MS.gene08818:CDS 30.0%
!! AGTTGGTAAGAAACTTTGTA+TGG - chr4.2:13148917-13148936 MS.gene08818:CDS 30.0%
!! CTGACTTTTAAGGATTTCAA+AGG - chr4.2:13146802-13146821 MS.gene08818:CDS 30.0%
!! TAGTTATTTGTTGTGTGTAC+AGG - chr4.2:13148315-13148334 MS.gene08818:intron 30.0%
!!! GACGTTTTTCTTTTTCGATT+AGG + chr4.2:13145717-13145736 None:intergenic 30.0%
!!! GTCAACAAAAATGCTGTTTT+TGG - chr4.2:13148861-13148880 MS.gene08818:CDS 30.0%
!!! TGGATTTTGATGGATTTTGT+GGG + chr4.2:13147442-13147461 None:intergenic 30.0%
!!! TTGATTATTTTTAGCCACCT+TGG - chr4.2:13148187-13148206 MS.gene08818:intron 30.0%
!!! TTGGATTTTGATGGATTTTG+TGG + chr4.2:13147443-13147462 None:intergenic 30.0%
!!! TTTTGTTCCGTTGATTTAGA+GGG - chr4.2:13146546-13146565 MS.gene08818:CDS 30.0%
!!! TTTTTGTTCCGTTGATTTAG+AGG - chr4.2:13146545-13146564 MS.gene08818:CDS 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+CGG - chr4.2:13147769-13147788 MS.gene08818:intron 30.0%
AAATCCTTACATTACCAAGG+TGG + chr4.2:13148204-13148223 None:intergenic 35.0%
AAATCGTAAACTGCATTCTC+AGG + chr4.2:13148463-13148482 None:intergenic 35.0%
AACAACTCACAAGAGTTTGA+GGG - chr4.2:13148378-13148397 MS.gene08818:intron 35.0%
AATCCTCATGATCGGATTAT+GGG - chr4.2:13146006-13146025 MS.gene08818:intron 35.0%
ACAATGCCTTACCTATAAAC+TGG - chr4.2:13147857-13147876 MS.gene08818:intron 35.0%
ACAATGTCACAGTACTCAAA+GGG + chr4.2:13148352-13148371 None:intergenic 35.0%
ACTCATGGTTACTATACTTC+TGG - chr4.2:13146057-13146076 MS.gene08818:intron 35.0%
ATAAAGCCCATTCATTTGTC+TGG + chr4.2:13147805-13147824 None:intergenic 35.0%
ATGGTTACTATACTTCTGGT+GGG - chr4.2:13146061-13146080 MS.gene08818:intron 35.0%
CAATGCCTTACCTATAAACT+GGG - chr4.2:13147858-13147877 MS.gene08818:intron 35.0%
CACCTAAAATTTATCTTGCC+TGG - chr4.2:13148741-13148760 MS.gene08818:intron 35.0%
CTAGGGATTGGGATTATAAA+CGG - chr4.2:13146229-13146248 MS.gene08818:intron 35.0%
GAGAAGTTCTCTTCTTCATT+TGG - chr4.2:13149441-13149460 MS.gene08818:CDS 35.0%
GCTCATCAAGTAATTTCCAA+TGG + chr4.2:13148632-13148651 None:intergenic 35.0%
GGAAATTACTTGATGAGCAA+GGG - chr4.2:13148634-13148653 MS.gene08818:intron 35.0%
GGATCTGTTGTTAAAGGTTA+AGG - chr4.2:13146661-13146680 MS.gene08818:CDS 35.0%
GTTTATAATCCCAATCCCTA+GGG + chr4.2:13146230-13146249 None:intergenic 35.0%
TAAAGCCCATTCATTTGTCT+GGG + chr4.2:13147804-13147823 None:intergenic 35.0%
TAATCCTCATGATCGGATTA+TGG - chr4.2:13146005-13146024 MS.gene08818:intron 35.0%
TCATATCGATCCACAATCTT+GGG - chr4.2:13145921-13145940 MS.gene08818:intron 35.0%
TCTGTTGTTAAAGGTTAAGG+GGG - chr4.2:13146664-13146683 MS.gene08818:CDS 35.0%
TGGAAATTACTTGATGAGCA+AGG - chr4.2:13148633-13148652 MS.gene08818:intron 35.0%
TTACATTTAGGGGGATGTAT+TGG + chr4.2:13147686-13147705 None:intergenic 35.0%
TTCATATCGATCCACAATCT+TGG - chr4.2:13145920-13145939 MS.gene08818:intron 35.0%
TTTGTTACCCCATTCGTTAA+CGG + chr4.2:13145662-13145681 None:intergenic 35.0%
! AATAATATTTAGGGCCCGTT+TGG - chr4.2:13147928-13147947 MS.gene08818:intron 35.0%
! ACTTCTGAAGGATTTCAACA+AGG - chr4.2:13149374-13149393 MS.gene08818:CDS 35.0%
! CTTCTGAAGGATTTCAACAA+GGG - chr4.2:13149375-13149394 MS.gene08818:CDS 35.0%
! GAAAAGGACTTTGAGAAGAT+TGG - chr4.2:13149294-13149313 MS.gene08818:CDS 35.0%
! GAATGCAGTTTACGATTTTG+AGG - chr4.2:13148465-13148484 MS.gene08818:intron 35.0%
! TGCTCTTTTGCTTTGTGATA+TGG - chr4.2:13146278-13146297 MS.gene08818:CDS 35.0%
! TGTGATATGGCTCATTTTAG+TGG - chr4.2:13146291-13146310 MS.gene08818:CDS 35.0%
! TTTCTGGAAACTTAATCTCG+CGG - chr4.2:13148780-13148799 MS.gene08818:intron 35.0%
!! CGTTTGAGTTTTTCTAAGAG+AGG - chr4.2:13147191-13147210 MS.gene08818:intron 35.0%
!! GGCAAGATAAATTTTAGGTG+AGG + chr4.2:13148741-13148760 None:intergenic 35.0%
!! TTTGTTCCGTTGATTTAGAG+GGG - chr4.2:13146547-13146566 MS.gene08818:CDS 35.0%
!!! TTTCTTTTTCGATTAGGTCG+TGG + chr4.2:13145711-13145730 None:intergenic 35.0%
!!! TTTTTTTTTTTGTGGTGGCC+GGG - chr4.2:13147770-13147789 MS.gene08818:intron 35.0%
AAAGCCCATTCATTTGTCTG+GGG + chr4.2:13147803-13147822 None:intergenic 40.0%
AATCCCATAATCCGATCATG+AGG + chr4.2:13146012-13146031 None:intergenic 40.0%
ACAACTCACAAGAGTTTGAG+GGG - chr4.2:13148379-13148398 MS.gene08818:intron 40.0%
ATAGAGAGACGAAGAGAGAA+AGG - chr4.2:13147289-13147308 MS.gene08818:intron 40.0%
ATTTCCAATGGCAACTGCAT+TGG + chr4.2:13148620-13148639 None:intergenic 40.0%
CAACAACTCACAAGAGTTTG+AGG - chr4.2:13148377-13148396 MS.gene08818:intron 40.0%
CACAATGTCACAGTACTCAA+AGG + chr4.2:13148353-13148372 None:intergenic 40.0%
CATACTCCCCTCTAAATCAA+CGG + chr4.2:13146556-13146575 None:intergenic 40.0%
CATAGCCCAGTTTATAGGTA+AGG + chr4.2:13147866-13147885 None:intergenic 40.0%
CATATCGATCCACAATCTTG+GGG - chr4.2:13145922-13145941 MS.gene08818:intron 40.0%
CATGGTTACTATACTTCTGG+TGG - chr4.2:13146060-13146079 MS.gene08818:intron 40.0%
CCATCTGGATCTGTTGTTAA+AGG - chr4.2:13146655-13146674 MS.gene08818:CDS 40.0%
CCTTTAACAACAGATCCAGA+TGG + chr4.2:13146658-13146677 None:intergenic 40.0%
CGGGCCATAGTATAACTATA+AGG - chr4.2:13148140-13148159 MS.gene08818:intron 40.0%
CGTTTATAATCCCAATCCCT+AGG + chr4.2:13146231-13146250 None:intergenic 40.0%
CTGTTGTTAAAGGTTAAGGG+GGG - chr4.2:13146665-13146684 MS.gene08818:CDS 40.0%
CTTTACCAGTCAATCCAAGA+GGG + chr4.2:13148714-13148733 None:intergenic 40.0%
GAGAGAGAGAGAGAGATAAA+AGG - chr4.2:13147262-13147281 MS.gene08818:intron 40.0%
GATGTTCTTTGCAGGAAACA+AGG - chr4.2:13148806-13148825 MS.gene08818:intron 40.0%
GGAATGATCTTCTACAGGAA+GGG - chr4.2:13148412-13148431 MS.gene08818:intron 40.0%
GTCGTCGAATTCACCTTATA+CGG + chr4.2:13146126-13146145 None:intergenic 40.0%
TAGTTATACTATGGCCCGTT+TGG + chr4.2:13148138-13148157 None:intergenic 40.0%
TATAAGGTGAATTCGACGAC+TGG - chr4.2:13146126-13146145 MS.gene08818:intron 40.0%
TCATGATCGGATTATGGGAT+TGG - chr4.2:13146011-13146030 MS.gene08818:intron 40.0%
TCTTCTTCATTTGGTATGCC+TGG - chr4.2:13149450-13149469 MS.gene08818:CDS 40.0%
TGAGAACCATCTTGTGTTGT+GGG - chr4.2:13148681-13148700 MS.gene08818:intron 40.0%
TGGAATGATCTTCTACAGGA+AGG - chr4.2:13148411-13148430 MS.gene08818:intron 40.0%
TGTACTTCATCTCAGATACC+AGG + chr4.2:13149479-13149498 None:intergenic 40.0%
TTAGGGGGATGTATTGGATT+AGG + chr4.2:13147680-13147699 None:intergenic 40.0%
TTGTTACCCCATTCGTTAAC+GGG + chr4.2:13145661-13145680 None:intergenic 40.0%
TTTATACCTGAGCAGCAACA+AGG + chr4.2:13146317-13146336 None:intergenic 40.0%
! AACGGCAAAGGTTTTCGATT+TGG + chr4.2:13145882-13145901 None:intergenic 40.0%
! CTTTGAGAGTTTGCCGTATA+AGG - chr4.2:13146110-13146129 MS.gene08818:intron 40.0%
! GGTATCTGAGATGAAGTACA+AGG - chr4.2:13149479-13149498 MS.gene08818:CDS 40.0%
! TGTTGACTGTGATGTTACAG+AGG + chr4.2:13148848-13148867 None:intergenic 40.0%
! TTCTAGAGGCTTGGTTGAAA+AGG - chr4.2:13149278-13149297 MS.gene08818:CDS 40.0%
! TTTTACTCAAGGTAGCTGAC+TGG - chr4.2:13149225-13149244 MS.gene08818:CDS 40.0%
!! TTAGCCACCTTGGTAATGTA+AGG - chr4.2:13148197-13148216 MS.gene08818:intron 40.0%
!!! AGGAGAAAGCGTTGGATTTT+AGG - chr4.2:13146172-13146191 MS.gene08818:intron 40.0%
!!! TTTTTTTTTTGTGGTGGCCG+GGG - chr4.2:13147771-13147790 MS.gene08818:intron 40.0%
ACGAAGAGAGAAAGGAGAGA+GGG - chr4.2:13147297-13147316 MS.gene08818:intron 45.0%
ACGTTAACTCCCCAAGATTG+TGG + chr4.2:13145934-13145953 None:intergenic 45.0%
ACTCACACTAGAGATCCAGA+AGG - chr4.2:13149341-13149360 MS.gene08818:CDS 45.0%
AGGGATGTTGCTGATAAGTG+TGG - chr4.2:13146255-13146274 MS.gene08818:CDS 45.0%
AGTTCTGTTAACAGGTGCTC+CGG - chr4.2:13149248-13149267 MS.gene08818:CDS 45.0%
ATACTATGGCCCGTTTGGAT+TGG + chr4.2:13148133-13148152 None:intergenic 45.0%
ATCATGAGGATTAAGCACGG+CGG + chr4.2:13145998-13146017 None:intergenic 45.0%
ATCTCAGATACCAGGAAACC+AGG + chr4.2:13149471-13149490 None:intergenic 45.0%
ATGGATCCCGTTAACGAATG+GGG - chr4.2:13145652-13145671 MS.gene08818:CDS 45.0%
ATGGGATTGGATCTTCCTTC+AGG - chr4.2:13146024-13146043 MS.gene08818:intron 45.0%
ATTCGTTACCGCCGTAGTAA+CGG + chr4.2:13145852-13145871 None:intergenic 45.0%
ATTGTGAGGACCACCTTGAA+GGG + chr4.2:13148518-13148537 None:intergenic 45.0%
ATTTGGTATGCCTGGTTTCC+TGG - chr4.2:13149458-13149477 MS.gene08818:CDS 45.0%
CCACCACAGATAATCAACCT+AGG + chr4.2:13146198-13146217 None:intergenic 45.0%
CCGATCATGAGGATTAAGCA+CGG + chr4.2:13146001-13146020 None:intergenic 45.0%
CCGTGCTTAATCCTCATGAT+CGG - chr4.2:13145998-13146017 MS.gene08818:intron 45.0%
CCTCTTGGATTGACTGGTAA+AGG - chr4.2:13148712-13148731 MS.gene08818:intron 45.0%
CCTTTACCAGTCAATCCAAG+AGG + chr4.2:13148715-13148734 None:intergenic 45.0%
CGAACCCCAGACAAATGAAT+GGG - chr4.2:13147796-13147815 MS.gene08818:intron 45.0%
CTGACTGGAGTTCTGTTAAC+AGG - chr4.2:13149240-13149259 MS.gene08818:CDS 45.0%
CTGAGAACCATCTTGTGTTG+TGG - chr4.2:13148680-13148699 MS.gene08818:intron 45.0%
CTGTTTCAAGGCAACAGCAA+GGG + chr4.2:13148554-13148573 None:intergenic 45.0%
GAAGATCCCACAACACAAGA+TGG + chr4.2:13148690-13148709 None:intergenic 45.0%
GAAGGATTTCAACAAGGGCT+TGG - chr4.2:13149380-13149399 MS.gene08818:CDS 45.0%
GGAGCATGGAAAACTTCTGA+AGG - chr4.2:13149362-13149381 MS.gene08818:CDS 45.0%
GGCATATGCCAAGCAAGTTA+AGG - chr4.2:13148594-13148613 MS.gene08818:intron 45.0%
GTTAACGTTCAGCCTTACTC+TGG - chr4.2:13145946-13145965 MS.gene08818:intron 45.0%
GTTCTTTGCAGGAAACAAGG+TGG - chr4.2:13148809-13148828 MS.gene08818:intron 45.0%
TAGAAGATCATTCCAGCCCT+AGG + chr4.2:13148406-13148425 None:intergenic 45.0%
TAGTGCTTACCCTAGGGATT+GGG - chr4.2:13146218-13146237 MS.gene08818:intron 45.0%
TCAGGTGGACATTTGACTCA+TGG - chr4.2:13146042-13146061 MS.gene08818:intron 45.0%
TCGAACCCCAGACAAATGAA+TGG - chr4.2:13147795-13147814 MS.gene08818:intron 45.0%
TGAGTCAAATGTCCACCTGA+AGG + chr4.2:13146042-13146061 None:intergenic 45.0%
TTCTGGTGGGAAGAAGATCT+CGG - chr4.2:13146074-13146093 MS.gene08818:intron 45.0%
! AAAGGTTAAGGGGGGTGTAT+TGG - chr4.2:13146673-13146692 MS.gene08818:CDS 45.0%
! AACCAAGCCTCTAGAAGTCA+TGG + chr4.2:13149274-13149293 None:intergenic 45.0%
! AAGGGATACAGTCTTGTCAC+TGG - chr4.2:13148652-13148671 MS.gene08818:intron 45.0%
! GAAGTTTTCCATGCTCCTTC+TGG + chr4.2:13149359-13149378 None:intergenic 45.0%
! GGCTTTATAAGCTCCCATCA+TGG - chr4.2:13147817-13147836 MS.gene08818:intron 45.0%
! TAAGGGGGGTGTATTGGATT+AGG - chr4.2:13146679-13146698 MS.gene08818:CDS 45.0%
! TATTTAGGGCCCGTTTGGAT+TGG - chr4.2:13147933-13147952 MS.gene08818:intron 45.0%
!! AGGCCTAGGTTGATTATCTG+TGG - chr4.2:13146192-13146211 MS.gene08818:intron 45.0%
!! CCTAGGTTGATTATCTGTGG+TGG - chr4.2:13146195-13146214 MS.gene08818:intron 45.0%
!! TGCATTGGCCTTAACTTGCT+TGG + chr4.2:13148605-13148624 None:intergenic 45.0%
!!! AAGCGTTGGATTTTAGGCCT+AGG - chr4.2:13146178-13146197 MS.gene08818:intron 45.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG - chr4.2:13147762-13147781 MS.gene08818:intron 5.0%
AAGAGAGAAAGGAGAGAGGG+GGG - chr4.2:13147300-13147319 MS.gene08818:intron 50.0%
AAGGCCAATGCAGTTGCCAT+TGG - chr4.2:13148613-13148632 MS.gene08818:intron 50.0%
ACAAGAGTTTGAGGGGTCCT+AGG - chr4.2:13148386-13148405 MS.gene08818:intron 50.0%
ACCCACACATTGAGCCATGA+TGG + chr4.2:13147834-13147853 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGGA+GGG - chr4.2:13147216-13147235 MS.gene08818:intron 50.0%
AGGTGACATGGCCTGTTTCA+AGG + chr4.2:13148566-13148585 None:intergenic 50.0%
ATGCCGGGTAACCGTTACTA+CGG - chr4.2:13145838-13145857 MS.gene08818:CDS 50.0%
ATGCGATGAGTTCGATTCCG+CGG + chr4.2:13145747-13145766 None:intergenic 50.0%
CAAGAGTTTGAGGGGTCCTA+GGG - chr4.2:13148387-13148406 MS.gene08818:intron 50.0%
CCCACACATTGAGCCATGAT+GGG + chr4.2:13147833-13147852 None:intergenic 50.0%
CCCATCATGGCTCAATGTGT+GGG - chr4.2:13147830-13147849 MS.gene08818:intron 50.0%
CCTGTTTCAAGGCAACAGCA+AGG + chr4.2:13148555-13148574 None:intergenic 50.0%
CGAAGAGAGAAAGGAGAGAG+GGG - chr4.2:13147298-13147317 MS.gene08818:intron 50.0%
CGATTAGGTCGTGGATCTCT+GGG + chr4.2:13145702-13145721 None:intergenic 50.0%
CGCGGTTTGATGTTCTTTGC+AGG - chr4.2:13148798-13148817 MS.gene08818:intron 50.0%
CGGAATCGAACTCATCGCAT+CGG - chr4.2:13145747-13145766 MS.gene08818:CDS 50.0%
CGTAAACTGCATTCTCAGGC+TGG + chr4.2:13148459-13148478 None:intergenic 50.0%
CTAGAGATCCAGAAGGAGCA+TGG - chr4.2:13149348-13149367 MS.gene08818:CDS 50.0%
CTAGTGTGAGTGTCACAGCA+CGG + chr4.2:13149332-13149351 None:intergenic 50.0%
GAAAAACGTCGTCAATGCCG+CGG - chr4.2:13145727-13145746 MS.gene08818:CDS 50.0%
GAAGAGAGAAAGGAGAGAGG+GGG - chr4.2:13147299-13147318 MS.gene08818:intron 50.0%
GACGAAGAGAGAAAGGAGAG+AGG - chr4.2:13147296-13147315 MS.gene08818:intron 50.0%
GATTGTGAGGACCACCTTGA+AGG + chr4.2:13148519-13148538 None:intergenic 50.0%
GCACCAATCTGGTGATTGTG+AGG + chr4.2:13148532-13148551 None:intergenic 50.0%
GGACCTAAACCACCCAAGAA+GGG - chr4.2:13148433-13148452 MS.gene08818:intron 50.0%
GGATTGGATCTTCCTTCAGG+TGG - chr4.2:13146027-13146046 MS.gene08818:intron 50.0%
GGATTTCAACAAGGGCTTGG+TGG - chr4.2:13149383-13149402 MS.gene08818:CDS 50.0%
GGGCTGGAATGATCTTCTAC+AGG - chr4.2:13148407-13148426 MS.gene08818:intron 50.0%
GGTCCTCACAATCACCAGAT+TGG - chr4.2:13148526-13148545 MS.gene08818:intron 50.0%
GTAGTGCTTACCCTAGGGAT+TGG - chr4.2:13146217-13146236 MS.gene08818:intron 50.0%
GTGTAAGCAGCGAAATTCGC+CGG + chr4.2:13145976-13145995 None:intergenic 50.0%
TCCCATCATGGCTCAATGTG+TGG - chr4.2:13147829-13147848 MS.gene08818:intron 50.0%
TCGATTAGGTCGTGGATCTC+TGG + chr4.2:13145703-13145722 None:intergenic 50.0%
TGAAACAGGCCATGTCACCT+GGG - chr4.2:13148566-13148585 MS.gene08818:intron 50.0%
TTACCAACTCGTACTCCTCC+TGG + chr4.2:13148906-13148925 None:intergenic 50.0%
TTGAAACAGGCCATGTCACC+TGG - chr4.2:13148565-13148584 MS.gene08818:intron 50.0%
TTGGCATATGCCTTGAACCC+AGG + chr4.2:13148586-13148605 None:intergenic 50.0%
! AAATACTCCGAAGGCATGCC+GGG - chr4.2:13145823-13145842 MS.gene08818:CDS 50.0%
! AAGCCTCTAGAAGTCATGGC+CGG + chr4.2:13149270-13149289 None:intergenic 50.0%
! AAGCTTGAAGAGCGCGTGAA+CGG + chr4.2:13145900-13145919 None:intergenic 50.0%
! CAAATACTCCGAAGGCATGC+CGG - chr4.2:13145822-13145841 MS.gene08818:CDS 50.0%
! GCAGTTTTCCCTTCCCTTCA+AGG - chr4.2:13148502-13148521 MS.gene08818:intron 50.0%
! GGATACAGTCTTGTCACTGG+TGG - chr4.2:13148655-13148674 MS.gene08818:intron 50.0%
! GTTTTCCCTTCCCTTCAAGG+TGG - chr4.2:13148505-13148524 MS.gene08818:intron 50.0%
! TAGGTTGGAGGAGAAAGCGT+TGG - chr4.2:13146164-13146183 MS.gene08818:intron 50.0%
! TCAGCCTTACTCTGGTTCAC+CGG - chr4.2:13145954-13145973 MS.gene08818:intron 50.0%
! TGGTGGTAGTGCTTACCCTA+GGG - chr4.2:13146212-13146231 MS.gene08818:intron 50.0%
! TTTTGGCGATAGCAGTGCCT+TGG - chr4.2:13148878-13148897 MS.gene08818:CDS 50.0%
!! CCTTGCTGTTGCCTTGAAAC+AGG - chr4.2:13148552-13148571 MS.gene08818:intron 50.0%
ACTGCCGAGAGCTTCGATGA+CGG + chr4.2:13145791-13145810 None:intergenic 55.0%
CTTCGCCCTCTTGGATTGAC+TGG - chr4.2:13148706-13148725 MS.gene08818:intron 55.0%
GAGAGAGAGAGAGAGAGAGG+AGG - chr4.2:13147215-13147234 MS.gene08818:intron 55.0%
GAGGACCACCTTGAAGGGAA+GGG + chr4.2:13148513-13148532 None:intergenic 55.0%
GGGACCTAAACCACCCAAGA+AGG - chr4.2:13148432-13148451 MS.gene08818:intron 55.0%
GGTGAGAGAGAGAGAGAGAG+AGG - chr4.2:13147212-13147231 MS.gene08818:intron 55.0%
TGAGGACCACCTTGAAGGGA+AGG + chr4.2:13148514-13148533 None:intergenic 55.0%
TGAGTGTCACAGCACGGTGA+AGG + chr4.2:13149326-13149345 None:intergenic 55.0%
TGCCTTGAACCCAGGTGACA+TGG + chr4.2:13148578-13148597 None:intergenic 55.0%
TGGCCCTTCTTGGGTGGTTT+AGG + chr4.2:13148439-13148458 None:intergenic 55.0%
TTCGCCGGTGAACCAGAGTA+AGG + chr4.2:13145961-13145980 None:intergenic 55.0%
TTCGCCGTCATCGAAGCTCT+CGG - chr4.2:13145784-13145803 MS.gene08818:CDS 55.0%
TTGTGGGATCTTCGCCCTCT+TGG - chr4.2:13148697-13148716 MS.gene08818:intron 55.0%
! ATTCTCAGGCTGGCCCTTCT+TGG + chr4.2:13148449-13148468 None:intergenic 55.0%
! GGCCATGACTTCTAGAGGCT+TGG - chr4.2:13149269-13149288 MS.gene08818:CDS 55.0%
! GTGGTGGTAGTGCTTACCCT+AGG - chr4.2:13146211-13146230 MS.gene08818:intron 55.0%
! TTCTCAGGCTGGCCCTTCTT+GGG + chr4.2:13148448-13148467 None:intergenic 55.0%
! TTTGTCTGGGGTTCGAACCC+CGG + chr4.2:13147791-13147810 None:intergenic 55.0%
!! CAACAGCAAGGGCACCAATC+TGG + chr4.2:13148543-13148562 None:intergenic 55.0%
!! CAAGGGCTTGGTGGACAACA+AGG - chr4.2:13149392-13149411 MS.gene08818:CDS 55.0%
!! TAGTGGCCTTGTTGCTGCTC+AGG - chr4.2:13146308-13146327 MS.gene08818:CDS 55.0%
ACGGTTACCCGGCATGCCTT+CGG + chr4.2:13145833-13145852 None:intergenic 60.0%
AGAAAGGAGAGAGGGGGGAG+GGG - chr4.2:13147305-13147324 MS.gene08818:intron 60.0%
AGAGAAAGGAGAGAGGGGGG+AGG - chr4.2:13147303-13147322 MS.gene08818:intron 60.0%
AGTTTGAGGGGTCCTAGGGC+TGG - chr4.2:13148391-13148410 MS.gene08818:intron 60.0%
CCGCCGTAGTAACGGTTACC+CGG + chr4.2:13145844-13145863 None:intergenic 60.0%
CCGGGTAACCGTTACTACGG+CGG - chr4.2:13145841-13145860 MS.gene08818:CDS 60.0%
GAGAAAGGAGAGAGGGGGGA+GGG - chr4.2:13147304-13147323 MS.gene08818:intron 60.0%
GATAGCAGTGCCTTGGCTCC+AGG - chr4.2:13148885-13148904 MS.gene08818:CDS 60.0%
GCTCCGGCCATGACTTCTAG+AGG - chr4.2:13149264-13149283 MS.gene08818:CDS 60.0%
GGCCATGTCACCTGGGTTCA+AGG - chr4.2:13148573-13148592 MS.gene08818:intron 60.0%
GTCGTGGATCTCTGGGTCGA+CGG + chr4.2:13145695-13145714 None:intergenic 60.0%
TCGTACTCCTCCTGGAGCCA+AGG + chr4.2:13148898-13148917 None:intergenic 60.0%
TCTGGGTCGACGGTTACGAG+TGG + chr4.2:13145685-13145704 None:intergenic 60.0%
! GAAGAGCGCGTGAACGGCAA+AGG + chr4.2:13145894-13145913 None:intergenic 60.0%
! GAGAGCTTCGATGACGGCGA+AGG + chr4.2:13145785-13145804 None:intergenic 60.0%
! GCTCCAGGAGGAGTACGAGT+TGG - chr4.2:13148900-13148919 MS.gene08818:CDS 60.0%
AGCAGTGCCTTGGCTCCAGG+AGG - chr4.2:13148888-13148907 MS.gene08818:CDS 65.0%
! TCAGGCTGGCCCTTCTTGGG+TGG + chr4.2:13148445-13148464 None:intergenic 65.0%
AGAGAGGGGGGAGGGGAGAG+AGG - chr4.2:13147312-13147331 MS.gene08818:intron 70.0%
AGAGGGGGGAGGGGAGAGAG+GGG - chr4.2:13147314-13147333 MS.gene08818:intron 70.0%
GAGAGGGGGGAGGGGAGAGA+GGG - chr4.2:13147313-13147332 MS.gene08818:intron 70.0%
AGGGGGGAGGGGAGAGAGGG+GGG - chr4.2:13147316-13147335 MS.gene08818:intron 75.0%
GAGGGGGGAGGGGAGAGAGG+GGG - chr4.2:13147315-13147334 MS.gene08818:intron 75.0%
GGGAGGGGAGAGAGGGGGGA+GGG - chr4.2:13147320-13147339 MS.gene08818:intron 75.0%
! GGGGAGGGGAGAGAGGGGGG+AGG - chr4.2:13147319-13147338 MS.gene08818:intron 80.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 13145652 13149506 13145652 ID=MS.gene08818
chr4.2 mRNA 13145652 13149506 13145652 ID=MS.gene08818.t1;Parent=MS.gene08818
chr4.2 exon 13148829 13149506 13148829 ID=MS.gene08818.t1.exon1;Parent=MS.gene08818.t1
chr4.2 CDS 13148829 13149506 13148829 ID=cds.MS.gene08818.t1;Parent=MS.gene08818.t1
chr4.2 exon 13146431 13146821 13146431 ID=MS.gene08818.t1.exon2;Parent=MS.gene08818.t1
chr4.2 CDS 13146431 13146821 13146431 ID=cds.MS.gene08818.t1;Parent=MS.gene08818.t1
chr4.2 exon 13146237 13146338 13146237 ID=MS.gene08818.t1.exon3;Parent=MS.gene08818.t1
chr4.2 CDS 13146237 13146338 13146237 ID=cds.MS.gene08818.t1;Parent=MS.gene08818.t1
chr4.2 exon 13145652 13145896 13145652 ID=MS.gene08818.t1.exon4;Parent=MS.gene08818.t1
chr4.2 CDS 13145652 13145896 13145652 ID=cds.MS.gene08818.t1;Parent=MS.gene08818.t1
Gene Sequence

>MS.gene08818

ATGGATCCCGTTAACGAATGGGGTAACAAACCACTCGTAACCGTCGACCCAGAGATCCACGACCTAATCGAAAAAGAAAAACGTCGTCAATGCCGCGGAATCGAACTCATCGCATCGGAAAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGCAGTGCCTTAACAAACAAATACTCCGAAGGCATGCCGGGTAACCGTTACTACGGCGGTAACGAATTCATCGACCAAATCGAAAACCTTTGCCGTTCACGCGCTCTTCAAGCTTTTCATATCGATCCACAATCTTGGGGAGTTAACGTTCAGCCTTACTCTGGTTCACCGGCGAATTTCGCTGCTTACACCGCCGTGCTTAATCCTCATGATCGGATTATGGGATTGGATCTTCCTTCAGGTGGACATTTGACTCATGGTTACTATACTTCTGGTGGGAAGAAGATCTCGGCGACTTCGATTTACTTTGAGAGTTTGCCGTATAAGGTGAATTCGACGACTGGTTTTATTGATTATGATAGGTTGGAGGAGAAAGCGTTGGATTTTAGGCCTAGGTTGATTATCTGTGGTGGTAGTGCTTACCCTAGGGATTGGGATTATAAACGGTTTAGGGATGTTGCTGATAAGTGTGGTGCTCTTTTGCTTTGTGATATGGCTCATTTTAGTGGCCTTGTTGCTGCTCAGGTATAAACTTTCATATCAATTTCTAATTTTGATTCAACCGTTATGTTAATTAGATTCATAATGTATCATATTAATTAGATTCATAAATTTCATATAAAGTTATTAGTTGTGTAAGTACAAAGTTTGATATCTGATTTTTAATTTAATGGATCTTGTTTGTTTCTTTTTATTTTACTTTTAGATCTGCTAGTTTATCATAGTAATAGATTTATACATTTTTGTTCCGTTGATTTAGAGGGGAGTATGTTTTATGCCTCATAGTTTGTTTACAGTGAATCTGCATTATTGTTTTTGTCATTTACAGATCATGTTGTTGTTATCTATTCCATCTGGATCTGTTGTTAAAGGTTAAGGGGGGTGTATTGGATTAGGATTTTAAAAGACTATTTTAATAAAAAAAAGTCTATAAGATTTTAAAAGACTTTTTATGTAAAAGACTTTATACACTCAAGATTTTAATGGATTTATCACACTGACTTTTAAGGATTTCAAAGGATTTTATGGGATTTTAAAATTTTAAAGGATTCAATGAATTTTAGGGGAAAAAAGAACAAACTTACAAGCGTGAATGATAAAAATAATGAACAAATAAATTCTAGCGTTTGAATAAAGAAAAATAAAACCAATAAAAAATTCTTTTGCTATTGATTTTAAAATTTTAAGGATTTTATGGATTTTATAAGATTTTAAGGGACTAAAAAACAACTCTTAACACATTATTCTCCATACACATTTTTTATTTGTTAAAAATGTTATTCCCACAATATTCAATTGTACATATTTAAAATTATGACAACCCTTACAAATCTTTCAAAAAAAAAATTGTGTCAGCCCTCATTTTGTGTTTGAAATTAGAGAAGTCGTTTGAGTTTTTCTAAGAGAGGTGAGAGAGAGAGAGAGAGAGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAAAAGGAGAGATAGAGAGACGAAGAGAGAAAGGAGAGAGGGGGGAGGGGAGAGAGGGGGGAGGGAGAAGAAAGAGATAGTAACTTTTAAATGAAAAACAATCCCAAGAAATCTCATCTTTTCATGAAAGACTTTTTCTTGTTAAAATTACACTACGAAATCCCACAAAATCCATCAAAATCCAATTTATTAAACAATCCTTCGAAATTTGAATGATTTTGAATACCATGAGACTTTTTTTAAATGATGAAAAGTCTTGATTGAATACCTCAAGACTTTTTTAAAATGACAAAGAGTCTTGATTGAATACCACAAGACTTTTTTTAAGATGCAAAAAGTCTTGATTGAATACCACAAGACTTTTTCATAATTAAAAAGTCTTTTAAAATCCCATAGAATCCTAATCCAATACATCCCCCTAAATGTAAAATACTAATGTATTTTGAAAATATCGATAAACTTGTCTTTTAAGGTGACAATTTTTTTTTTTTTTTTTTTTTTTTGTGGTGGCCGGGGTTCGAACCCCAGACAAATGAATGGGCTTTATAAGCTCCCATCATGGCTCAATGTGTGGGTACGACAATGCCTTACCTATAAACTGGGCTATGATAAACATTGATGCTAGGTTAAGTCCAAAACCCAAGAACATCAATAATATTTAGGGCCCGTTTGGATTGGCTTATTTTTGAGCTTATATAAATAAACAAGCTTTTATGTTAATTCATAAGTTCTCACTAACGAAAATGGCATCTTCATAAGCTGTGTTTTCATAAACTACCTTGACAAGCTTATGAATAATACATAAAAGCTTATTTATTTGCATAAGTTGTTGCACATAAGCTCAAAAATTAGCCAATCCAAACGGGCCATAGTATAACTATAAGGAGTATAATTTTTTAGTAAATCGTTTTGATTATTTTTAGCCACCTTGGTAATGTAAGGATTTATTAGAAGGCATGTTCATTTATGTTGTCTCAAAGCTTTTCTTACGGATAATAATATGACTTGTTTTGTTTGGTATGAATGAATGATAACTCTAGTTATTTGTTGTGTGTACAGGAAGTTAATAATCCCTTTGAGTACTGTGACATTGTGACAACAACAACTCACAAGAGTTTGAGGGGTCCTAGGGCTGGAATGATCTTCTACAGGAAGGGACCTAAACCACCCAAGAAGGGCCAGCCTGAGAATGCAGTTTACGATTTTGAGGACAAGATCAACTTTGCAGTTTTCCCTTCCCTTCAAGGTGGTCCTCACAATCACCAGATTGGTGCCCTTGCTGTTGCCTTGAAACAGGCCATGTCACCTGGGTTCAAGGCATATGCCAAGCAAGTTAAGGCCAATGCAGTTGCCATTGGAAATTACTTGATGAGCAAGGGATACAGTCTTGTCACTGGTGGAACTGAGAACCATCTTGTGTTGTGGGATCTTCGCCCTCTTGGATTGACTGGTAAAGGATACCTCACCTAAAATTTATCTTGCCTGGTTTATATTGCGTACTATTTCTGGAAACTTAATCTCGCGGTTTGATGTTCTTTGCAGGAAACAAGGTGGAGAAACTTTGTGACCTCTGTAACATCACAGTCAACAAAAATGCTGTTTTTGGCGATAGCAGTGCCTTGGCTCCAGGAGGAGTACGAGTTGGTAAGAAACTTTGTATGGACTTAACTTTATTTTCGGAGTCTAAACTTGGGATGCATTGATAGCAAGCAAGTTGTTGTAAATTTTGTTGGAAATCAATTTGATTGAGGATGTCTTTGTAATGTTTTTTTTTCCTTTCATTTCTTTACCAAGTAGTATTATTTGATTTGTTTCAGCTGACCATGTAAAAATTGTAAATATGCAATGTGATTGTCAAAATACTTGTTTTTAGTGTATCTGACTCCTTTTAATCTTGTTACTGTATATTTTTTCTGATGTTTGTAAAACTTGTGCCTTTGTTTTATATTTTACTCAAGGTAGCTGACTGGAGTTCTGTTAACAGGTGCTCCGGCCATGACTTCTAGAGGCTTGGTTGAAAAGGACTTTGAGAAGATTGGAGAGTTCCTTCACCGTGCTGTGACACTCACACTAGAGATCCAGAAGGAGCATGGAAAACTTCTGAAGGATTTCAACAAGGGCTTGGTGGACAACAAGGCTATTGCAGAACTCAAAGCTGATGTTGAGAAGTTCTCTTCTTCATTTGGTATGCCTGGTTTCCTGGTATCTGAGATGAAGTACAAGGATTAA
Protein sequence

>MS.gene08818.t1

MDPVNEWGNKPLVTVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDQIENLCRSRALQAFHIDPQSWGVNVQPYSGSPANFAAYTAVLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSTTGFIDYDRLEEKALDFRPRLIICGGSAYPRDWDYKRFRDVADKCGALLLCDMAHFSGLVAAQEVNNPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMSPGFKAYAKQVKANAVAIGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEKIGEFLHRAVTLTLEIQKEHGKLLKDFNKGLVDNKAIAELKADVEKFSSSFGMPGFLVSEMKYKD