Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08969.t1 | AET04083.2 | 96.9 | 459 | 14 | 0 | 88 | 546 | 125 | 583 | 1.80E-204 | 722.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08969.t1 | G7LH24 | 96.9 | 459 | 14 | 0 | 88 | 546 | 125 | 583 | 1.3e-204 | 722.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049343 | MS.gene08969 | 0.80239 | 5.74E-49 | -1.69E-46 |
| MS.gene050737 | MS.gene08969 | 0.816428 | 5.56E-52 | -1.69E-46 |
| MS.gene050941 | MS.gene08969 | 0.803836 | 2.88E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene08969 | 0.824053 | 9.94E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene08969 | 0.812859 | 3.43E-51 | -1.69E-46 |
| MS.gene057855 | MS.gene08969 | 0.810313 | 1.23E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene08969 | 0.822413 | 2.40E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08969.t1 | MTR_8g081570 | 95.949 | 469 | 19 | 0 | 78 | 546 | 91 | 559 | 0.0 | 909 |
| MS.gene08969.t1 | MTR_8g081570 | 95.949 | 469 | 19 | 0 | 78 | 546 | 115 | 583 | 0.0 | 905 |
| MS.gene08969.t1 | MTR_3g084030 | 45.783 | 332 | 154 | 8 | 83 | 389 | 120 | 450 | 1.29e-55 | 202 |
| MS.gene08969.t1 | MTR_3g084030 | 57.979 | 188 | 65 | 4 | 338 | 524 | 505 | 679 | 1.03e-51 | 191 |
| MS.gene08969.t1 | MTR_3g084030 | 45.783 | 332 | 154 | 8 | 83 | 389 | 92 | 422 | 2.08e-55 | 202 |
| MS.gene08969.t1 | MTR_3g084030 | 57.979 | 188 | 65 | 4 | 338 | 524 | 525 | 699 | 9.14e-52 | 191 |
| MS.gene08969.t1 | MTR_3g084030 | 45.783 | 332 | 154 | 8 | 83 | 389 | 120 | 450 | 2.81e-55 | 201 |
| MS.gene08969.t1 | MTR_3g084030 | 57.979 | 188 | 65 | 4 | 338 | 524 | 553 | 727 | 1.12e-51 | 191 |
| MS.gene08969.t1 | MTR_3g084030 | 57.979 | 188 | 65 | 4 | 338 | 524 | 135 | 309 | 1.55e-51 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08969.t1 | AT5G48610 | 29.787 | 423 | 235 | 11 | 139 | 546 | 109 | 484 | 4.03e-26 | 112 |
| MS.gene08969.t1 | AT5G48610 | 29.787 | 423 | 235 | 11 | 139 | 546 | 109 | 484 | 4.03e-26 | 112 |
| MS.gene08969.t1 | AT5G43490 | 38.182 | 165 | 94 | 3 | 387 | 546 | 24 | 185 | 4.22e-18 | 82.8 |
Find 162 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGTCTCCTTCCGTTTCT+TGG | 0.133862 | 4.4:+14833919 | None:intergenic |
| CTCGAACTCCAGAAGGAATT+TGG | 0.141038 | 4.4:+14834609 | None:intergenic |
| AAGCATTTGGAATGGAAATT+TGG | 0.177507 | 4.4:+14833552 | None:intergenic |
| CGAGGGAACTGTTAAGTTTA+TGG | 0.211053 | 4.4:-14834509 | MS.gene08969:CDS |
| TTGGGTATTCCATCAGCTTT+TGG | 0.215880 | 4.4:+14834340 | None:intergenic |
| GCTGATGGCAAAGGACTTTC+TGG | 0.225136 | 4.4:-14834787 | MS.gene08969:CDS |
| TCCCACCCTCTCACAGAAAA+TGG | 0.255170 | 4.4:-14833593 | MS.gene08969:CDS |
| TATCAGGCTTGATTTCCTTC+TGG | 0.264456 | 4.4:+14834734 | None:intergenic |
| GCACTGCTGGTGGCTATTCC+TGG | 0.275184 | 4.4:+14833521 | None:intergenic |
| CTGGGGAAACACCGCAAGTA+TGG | 0.279696 | 4.4:-14833235 | MS.gene08969:CDS |
| GGCCAGCCCGGTGTCTTTGC+CGG | 0.283629 | 4.4:-14836531 | MS.gene08969:CDS |
| AAATCAGACCATTCCACTTT+AGG | 0.287385 | 4.4:+14833329 | None:intergenic |
| AACAAGGAATGCAAGATAAA+TGG | 0.298473 | 4.4:-14833488 | MS.gene08969:CDS |
| ACAAAGAGACCCTTCTTATC+AGG | 0.303070 | 4.4:+14834718 | None:intergenic |
| TTGTTGGTCTCAAAAGATTC+TGG | 0.317902 | 4.4:-14836552 | MS.gene08969:CDS |
| GTACCACCATCTGGTGGTTT+TGG | 0.329982 | 4.4:+14836385 | None:intergenic |
| TTTGAAGATGCTTCAATTAA+CGG | 0.332894 | 4.4:+14833398 | None:intergenic |
| CACAGAAAATGGAAGGATAT+TGG | 0.337823 | 4.4:-14833582 | MS.gene08969:CDS |
| AAAATTATCAAACAGTATAA+TGG | 0.344776 | 4.4:-14834688 | MS.gene08969:CDS |
| CAAGGATCCCAAATTCCTTC+TGG | 0.349488 | 4.4:-14834617 | MS.gene08969:CDS |
| AGGAGAATTAAGGATGATAA+TGG | 0.354543 | 4.4:-14834586 | MS.gene08969:CDS |
| TCAGTCTCCTTCCGTTTCTT+GGG | 0.357478 | 4.4:+14833920 | None:intergenic |
| AAATACTTCCCCATAGGTTT+GGG | 0.366582 | 4.4:+14834322 | None:intergenic |
| TTCTTACAGCCAATGAGAAT+TGG | 0.369962 | 4.4:-14833643 | MS.gene08969:intron |
| GAAATACTTCCCCATAGGTT+TGG | 0.377644 | 4.4:+14834321 | None:intergenic |
| CGGCTTAGGTACTTGGTATC+TGG | 0.378474 | 4.4:+14833365 | None:intergenic |
| TTGGATGCTAAGAAAATTGA+TGG | 0.379631 | 4.4:-14834433 | MS.gene08969:CDS |
| CCTGGCCTATCTGAAGCATT+TGG | 0.386031 | 4.4:+14833539 | None:intergenic |
| AATCAAATAACCAATCAGTA+TGG | 0.389922 | 4.4:+14833158 | None:intergenic |
| TAAAGTGGAATGGTCTGATT+TGG | 0.395164 | 4.4:-14833327 | MS.gene08969:CDS |
| TCGAACTCCAGAAGGAATTT+GGG | 0.395578 | 4.4:+14834610 | None:intergenic |
| GGAGTTCGAGAGGAGAATTA+AGG | 0.412047 | 4.4:-14834596 | MS.gene08969:CDS |
| ATATATGCGGCTTAGGTACT+TGG | 0.412938 | 4.4:+14833358 | None:intergenic |
| AACAGTATAATGGAAACAAT+GGG | 0.418672 | 4.4:-14834678 | MS.gene08969:CDS |
| CTTACTCGGCCAATTCTCAT+TGG | 0.418828 | 4.4:+14833634 | None:intergenic |
| CTTGCTGAGGTACGACCTCT+TGG | 0.424367 | 4.4:-14834400 | MS.gene08969:CDS |
| CCATTCCAAATGCTTCAGAT+AGG | 0.429248 | 4.4:-14833544 | MS.gene08969:CDS |
| GTACCTAAGCCGCATATATT+CGG | 0.432368 | 4.4:-14833354 | MS.gene08969:CDS |
| CATATATTCGGTACCTAAAG+TGG | 0.432721 | 4.4:-14833342 | MS.gene08969:CDS |
| AATTCTTGATTTGACAGTTC+CGG | 0.438606 | 4.4:+14836512 | None:intergenic |
| GGAAATCAAGCCTGATAAGA+AGG | 0.442190 | 4.4:-14834728 | MS.gene08969:CDS |
| AAGAATAAAGAGGAGAAGAA+AGG | 0.449885 | 4.4:-14834121 | MS.gene08969:CDS |
| CAGTTCCCTCGTCCATCCTA+TGG | 0.452442 | 4.4:+14834521 | None:intergenic |
| GCTTCAATTAACGGAACAAC+TGG | 0.453814 | 4.4:+14833407 | None:intergenic |
| TGGAAGGGCTGGTAATCAAT+TGG | 0.457433 | 4.4:-14834566 | MS.gene08969:CDS |
| AAAACTCAGGGATAAGGGTT+TGG | 0.464839 | 4.4:-14834452 | MS.gene08969:CDS |
| TGATGGAATACCCAAACCTA+TGG | 0.467882 | 4.4:-14834332 | MS.gene08969:CDS |
| GTGGTGAAATCTTCAGAGGC+TGG | 0.470353 | 4.4:-14833254 | MS.gene08969:CDS |
| GTACCGAATATATGCGGCTT+AGG | 0.471466 | 4.4:+14833351 | None:intergenic |
| GGAAAAGAAAGAGGAAGGAA+AGG | 0.471618 | 4.4:-14834188 | MS.gene08969:CDS |
| AACAACTGGCACAGTTGCAG+TGG | 0.473289 | 4.4:+14833421 | None:intergenic |
| ACCCTTACAATCCAACCAAT+GGG | 0.473676 | 4.4:+14836717 | None:intergenic |
| GTGAAGGAATTTGAATGTAT+AGG | 0.475515 | 4.4:+14833989 | None:intergenic |
| GTTAAGGAAAAGAAAGAGGA+AGG | 0.478443 | 4.4:-14834193 | MS.gene08969:CDS |
| AACCCTTACAATCCAACCAA+TGG | 0.487188 | 4.4:+14836716 | None:intergenic |
| GGCTAGAGAGAACAATCATC+TGG | 0.487247 | 4.4:-14834650 | MS.gene08969:CDS |
| GAAGTATTTCGACAAGAACT+TGG | 0.487563 | 4.4:-14834308 | MS.gene08969:CDS |
| GACACGGGAAGGACAAAGAC+AGG | 0.491672 | 4.4:-14834099 | MS.gene08969:CDS |
| CAACGCCAACAGAATTCTCA+TGG | 0.492996 | 4.4:+14833948 | None:intergenic |
| AAGGATGATAATGGAAGGGC+TGG | 0.493913 | 4.4:-14834577 | MS.gene08969:CDS |
| GCCTCTGAAGATTTCACCAC+GGG | 0.498285 | 4.4:+14833257 | None:intergenic |
| AAAAGTTAAGGAAAAGAAAG+AGG | 0.499160 | 4.4:-14834197 | MS.gene08969:CDS |
| AATCAGTATGGAATGACATA+TGG | 0.502166 | 4.4:+14833170 | None:intergenic |
| GCAGTGGGAGTCTTATTTGA+GGG | 0.504627 | 4.4:+14833437 | None:intergenic |
| GGGTGGGAAGAGGATGGTCT+TGG | 0.507218 | 4.4:+14833608 | None:intergenic |
| AGGTACTTGGTATCTGGATG+AGG | 0.509239 | 4.4:+14833371 | None:intergenic |
| CGGAAGGAGACTGAGTCAAA+TGG | 0.511323 | 4.4:-14833911 | MS.gene08969:CDS |
| GATGGTCTTGGCAACTTACT+CGG | 0.513355 | 4.4:+14833620 | None:intergenic |
| GACAGTTCCGGCAAAGACAC+CGG | 0.515922 | 4.4:+14836524 | None:intergenic |
| TGCAGTGGGAGTCTTATTTG+AGG | 0.516352 | 4.4:+14833436 | None:intergenic |
| ATGATGTTAGCGGTGGTGCT+TGG | 0.516964 | 4.4:+14836468 | None:intergenic |
| TGGTGAAATCTTCAGAGGCT+GGG | 0.517499 | 4.4:-14833253 | MS.gene08969:CDS |
| AAGTTTATGGCTAGGAGTAG+TGG | 0.517647 | 4.4:-14834496 | MS.gene08969:CDS |
| CAAGCAGAGGGTCTCACTGC+AGG | 0.524643 | 4.4:-14834763 | MS.gene08969:CDS |
| TAATGGAAACAATGGGGAGA+TGG | 0.525019 | 4.4:-14834671 | MS.gene08969:CDS |
| TTGTCGAAATACTTCCCCAT+AGG | 0.525080 | 4.4:+14834316 | None:intergenic |
| TGGGGATAGATCCCATTGGT+TGG | 0.525320 | 4.4:-14836728 | MS.gene08969:CDS |
| AAACAGTATAATGGAAACAA+TGG | 0.525718 | 4.4:-14834679 | MS.gene08969:CDS |
| TTCTGTGAGAGGGTGGGAAG+AGG | 0.526090 | 4.4:+14833598 | None:intergenic |
| ATCGTGCAAGTACCACCATC+TGG | 0.527287 | 4.4:+14836376 | None:intergenic |
| TCAAAAGATTCTGGCCAGCC+CGG | 0.533022 | 4.4:-14836543 | MS.gene08969:CDS |
| TGCAAATTCAAACCATAGGA+TGG | 0.535140 | 4.4:-14834533 | MS.gene08969:CDS |
| AACTTGGAAGCAACCATTGG+AGG | 0.535799 | 4.4:-14834292 | MS.gene08969:CDS |
| CTGATTTGGATGGTCAAGAA+TGG | 0.536489 | 4.4:-14833313 | MS.gene08969:CDS |
| TTCTATCTTAGCACTGCTGG+TGG | 0.536680 | 4.4:+14833511 | None:intergenic |
| GCTAAGAAAATTGATGGGAA+AGG | 0.545523 | 4.4:-14834427 | MS.gene08969:CDS |
| AGTATGGAATGACATATGGC+AGG | 0.548436 | 4.4:+14833174 | None:intergenic |
| GGAGAAGAAAGGACACGGGA+AGG | 0.548439 | 4.4:-14834110 | MS.gene08969:CDS |
| TACTTGGTATCTGGATGAGG+TGG | 0.549403 | 4.4:+14833374 | None:intergenic |
| CAGTGCTAAGATAGAAAACA+AGG | 0.550117 | 4.4:-14833504 | MS.gene08969:CDS |
| AACCATTGGAGGGAAAGAAA+AGG | 0.550883 | 4.4:-14834281 | MS.gene08969:CDS |
| GATGGAATACCCAAACCTAT+GGG | 0.553116 | 4.4:-14834331 | MS.gene08969:CDS |
| TGGGGAAACACCGCAAGTAT+GGG | 0.553197 | 4.4:-14833234 | MS.gene08969:CDS |
| AAGAACTTGGAAGCAACCAT+TGG | 0.553399 | 4.4:-14834295 | MS.gene08969:CDS |
| ACTACAGTTCAGAACCATGC+TGG | 0.554427 | 4.4:-14834373 | MS.gene08969:CDS |
| ACAGTTCCGGCAAAGACACC+GGG | 0.556106 | 4.4:+14836525 | None:intergenic |
| GCGTTGAAAATCCCAAGAAA+CGG | 0.556814 | 4.4:-14833931 | MS.gene08969:CDS |
| AACGGCCATGAGAATTCTGT+TGG | 0.556917 | 4.4:-14833953 | MS.gene08969:CDS |
| GAACTGTTAAGTTTATGGCT+AGG | 0.557585 | 4.4:-14834504 | MS.gene08969:CDS |
| TTCTCCTCTCGAACTCCAGA+AGG | 0.559817 | 4.4:+14834602 | None:intergenic |
| CCAAATGCTTCAGATAGGCC+AGG | 0.565202 | 4.4:-14833539 | MS.gene08969:CDS |
| TCATCTGGCTGAGGAGAACA+AGG | 0.565545 | 4.4:-14834635 | MS.gene08969:CDS |
| TTGGATGAAAATTTCCAGCA+TGG | 0.566997 | 4.4:+14834359 | None:intergenic |
| AGTTTGCAAATTCAAACCAT+AGG | 0.568788 | 4.4:-14834537 | MS.gene08969:CDS |
| CCTATCTGAAGCATTTGGAA+TGG | 0.571920 | 4.4:+14833544 | None:intergenic |
| CACTGCAGGTAAACTCCAGA+AGG | 0.572456 | 4.4:-14834749 | MS.gene08969:CDS |
| TACATTCAAATTCCTTCACA+CGG | 0.574222 | 4.4:-14833985 | MS.gene08969:CDS |
| TTCCGGCAAAGACACCGGGC+TGG | 0.574457 | 4.4:+14836529 | None:intergenic |
| TTATTTGAGGGTACTGCAAG+TGG | 0.575944 | 4.4:+14833449 | None:intergenic |
| TTAAAAGAAAGCAACATTGG+TGG | 0.576801 | 4.4:-14834013 | MS.gene08969:CDS |
| AGAGAACAATCATCTGGCTG+AGG | 0.583452 | 4.4:-14834644 | MS.gene08969:CDS |
| GGTGAAATCTTCAGAGGCTG+GGG | 0.583565 | 4.4:-14833252 | MS.gene08969:CDS |
| ACTTGGAAGCAACCATTGGA+GGG | 0.583579 | 4.4:-14834291 | MS.gene08969:CDS |
| AGTAAAACCAGTACTGCTGA+TGG | 0.586455 | 4.4:-14834802 | MS.gene08969:intron |
| AGGATGAAGAGATTGGTTGT+TGG | 0.587385 | 4.4:-14836568 | MS.gene08969:CDS |
| GGACTTTCTGGACAAGCAGA+GGG | 0.590158 | 4.4:-14834775 | MS.gene08969:CDS |
| AAATTAAAAGAAAGCAACAT+TGG | 0.590267 | 4.4:-14834016 | MS.gene08969:CDS |
| AGTAGTGGAACCTTGCATGA+TGG | 0.592739 | 4.4:-14834481 | MS.gene08969:CDS |
| AGGACTTTCTGGACAAGCAG+AGG | 0.592896 | 4.4:-14834776 | MS.gene08969:CDS |
| GTGAGAGGGTGGGAAGAGGA+TGG | 0.595267 | 4.4:+14833602 | None:intergenic |
| GAATTAAGGATGATAATGGA+AGG | 0.597808 | 4.4:-14834582 | MS.gene08969:CDS |
| ACCAGTACTGCTGATGGCAA+AGG | 0.601620 | 4.4:-14834796 | MS.gene08969:intron |
| TGGATGCTAAGAAAATTGAT+GGG | 0.601666 | 4.4:-14834432 | MS.gene08969:CDS |
| TTCACACGGATTAGCAAGAA+CGG | 0.605133 | 4.4:-14833971 | MS.gene08969:CDS |
| ATTCGGTACCTAAAGTGGAA+TGG | 0.605226 | 4.4:-14833337 | MS.gene08969:CDS |
| AAGTGTGAGGATGAAGAGAT+TGG | 0.608901 | 4.4:-14836575 | MS.gene08969:CDS |
| ACCCTCTCACAGAAAATGGA+AGG | 0.610742 | 4.4:-14833589 | MS.gene08969:CDS |
| GAAATCAAGCCTGATAAGAA+GGG | 0.614173 | 4.4:-14834727 | MS.gene08969:CDS |
| TCAACATTCGATGATGTTAG+CGG | 0.615752 | 4.4:+14836458 | None:intergenic |
| AAAGAGGAGAAGAAAGGACA+CGG | 0.618593 | 4.4:-14834115 | MS.gene08969:CDS |
| TTCAAACCATAGGATGGACG+AGG | 0.621539 | 4.4:-14834527 | MS.gene08969:CDS |
| AAGAGGAGAAGAAAGGACAC+GGG | 0.622809 | 4.4:-14834114 | MS.gene08969:CDS |
| GTATGGAATGACATATGGCA+GGG | 0.627043 | 4.4:+14833175 | None:intergenic |
| GTTCTTGCTAATCCGTGTGA+AGG | 0.628227 | 4.4:+14833973 | None:intergenic |
| TTTATGGGGATAGATCCCAT+TGG | 0.631026 | 4.4:-14836732 | MS.gene08969:CDS |
| AGAATAGAAGTGGAAGTGTG+AGG | 0.631216 | 4.4:-14836588 | MS.gene08969:intron |
| AATTCCTTCTGGAGTTCGAG+AGG | 0.632804 | 4.4:-14834606 | MS.gene08969:CDS |
| AATTAAGGATGATAATGGAA+GGG | 0.640939 | 4.4:-14834581 | MS.gene08969:CDS |
| TGAAAATCCCAAGAAACGGA+AGG | 0.641331 | 4.4:-14833927 | MS.gene08969:CDS |
| ACCCGTGGTGAAATCTTCAG+AGG | 0.644415 | 4.4:-14833258 | MS.gene08969:CDS |
| ACAACTGGCACAGTTGCAGT+GGG | 0.649267 | 4.4:+14833422 | None:intergenic |
| TCATCTTTACACTCACCGCA+CGG | 0.650926 | 4.4:-14836435 | MS.gene08969:CDS |
| AGAGAAGAAAGATAAGACGA+AGG | 0.653032 | 4.4:-14834071 | MS.gene08969:CDS |
| TTCACAAGAAAGAGAACCCG+TGG | 0.659067 | 4.4:-14833273 | MS.gene08969:CDS |
| GTGGAATGGTCTGATTTGGA+TGG | 0.668446 | 4.4:-14833323 | MS.gene08969:CDS |
| CTTTAGGTACCGAATATATG+CGG | 0.669167 | 4.4:+14833345 | None:intergenic |
| CTTGATCAGTGTTAGCCGTG+CGG | 0.669957 | 4.4:+14836420 | None:intergenic |
| TGAACTGTAGTATTTCCAAG+AGG | 0.677524 | 4.4:+14834385 | None:intergenic |
| CCTTCACCAAAACCACCAGA+TGG | 0.678217 | 4.4:-14836391 | MS.gene08969:CDS |
| ACATTCGATGATGTTAGCGG+TGG | 0.678781 | 4.4:+14836461 | None:intergenic |
| AGCCTCTGAAGATTTCACCA+CGG | 0.682135 | 4.4:+14833256 | None:intergenic |
| TCACCAAAACCACCAGATGG+TGG | 0.682644 | 4.4:-14836388 | MS.gene08969:intron |
| ATGGAATACCCAAACCTATG+GGG | 0.696195 | 4.4:-14834330 | MS.gene08969:CDS |
| GCATACTGAACTCAAAACCA+CGG | 0.698050 | 4.4:-14834047 | MS.gene08969:CDS |
| AGTGGAACCTTGCATGATGG+CGG | 0.700303 | 4.4:-14834478 | MS.gene08969:CDS |
| TCAAACCATAGGATGGACGA+GGG | 0.711030 | 4.4:-14834526 | MS.gene08969:CDS |
| GTGCAAGTACCACCATCTGG+TGG | 0.711350 | 4.4:+14836379 | None:intergenic |
| ACACGGGAAGGACAAAGACA+GGG | 0.714929 | 4.4:-14834098 | MS.gene08969:CDS |
| AAAATTAAAGATGATAAACG+AGG | 0.718970 | 4.4:-14834154 | MS.gene08969:CDS |
| ACAGTATAATGGAAACAATG+GGG | 0.726804 | 4.4:-14834677 | MS.gene08969:CDS |
| GAGTCAAATGGAGTTCTACG+TGG | 0.730691 | 4.4:-14833899 | MS.gene08969:intron |
| TGGGAAAGGAATGCTTGCTG+AGG | 0.751387 | 4.4:-14834413 | MS.gene08969:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATTATAATATGTC+AGG | + | chr4.4:14836232-14836251 | None:intergenic | 10.0% |
| !! | AAAATTATCAAACAGTATAA+TGG | - | chr4.4:14835213-14835232 | MS.gene08969:intron | 15.0% |
| !! | AGTGGATATAATATTTATAT+GGG | - | chr4.4:14834168-14834187 | MS.gene08969:CDS | 15.0% |
| !! | ATATAAATATTATATCCACT+AGG | + | chr4.4:14834168-14834187 | None:intergenic | 15.0% |
| !! | TATAAATATTATATCCACTA+GGG | + | chr4.4:14834167-14834186 | None:intergenic | 15.0% |
| !! | TTTATATGTTGTTCAAATAT+AGG | - | chr4.4:14833945-14833964 | MS.gene08969:CDS | 15.0% |
| !!! | TAGTGGATATAATATTTATA+TGG | - | chr4.4:14834167-14834186 | MS.gene08969:CDS | 15.0% |
| !!! | TATAGTTGAAGTTTTTATTT+TGG | - | chr4.4:14834568-14834587 | MS.gene08969:CDS | 15.0% |
| !!! | TTATGTTGATATTTCATTTT+TGG | - | chr4.4:14836159-14836178 | MS.gene08969:intron | 15.0% |
| !! | AAAACACAAAAAAGATAAGA+AGG | - | chr4.4:14834930-14834949 | MS.gene08969:intron | 20.0% |
| !! | AAAATTAAAGATGATAAACG+AGG | - | chr4.4:14835747-14835766 | MS.gene08969:intron | 20.0% |
| !! | AAATTAAAAGAAAGCAACAT+TGG | - | chr4.4:14835885-14835904 | MS.gene08969:intron | 20.0% |
| !! | AGAAAAAAGAAAGAATAAAG+AGG | - | chr4.4:14835770-14835789 | MS.gene08969:intron | 20.0% |
| !! | AGGATAAAAAGGAAAAAAAA+AGG | - | chr4.4:14835010-14835029 | MS.gene08969:intron | 20.0% |
| !! | ATAAAAGAAATATCAAGCTT+TGG | + | chr4.4:14833814-14833833 | None:intergenic | 20.0% |
| !! | ATAAATATTATATCCACTAG+GGG | + | chr4.4:14834166-14834185 | None:intergenic | 20.0% |
| !! | GAGAATAATGCAAAAAAAAA+AGG | + | chr4.4:14834791-14834810 | None:intergenic | 20.0% |
| !! | GGATAAAAAGGAAAAAAAAA+GGG | - | chr4.4:14835011-14835030 | MS.gene08969:intron | 20.0% |
| !!! | ATTTTTGGAATTTCTAACTT+AGG | - | chr4.4:14834718-14834737 | MS.gene08969:CDS | 20.0% |
| !!! | GTTTACTATTGTTGTTTTTT+CGG | + | chr4.4:14833724-14833743 | None:intergenic | 20.0% |
| !!! | TAAAGTCTAGAATATTTTGT+AGG | - | chr4.4:14834658-14834677 | MS.gene08969:CDS | 20.0% |
| !!! | TTATTTTAAGGGTTAACAAA+GGG | + | chr4.4:14834297-14834316 | None:intergenic | 20.0% |
| !!! | TTCAAGTTTGTTTATTGTAA+GGG | + | chr4.4:14834438-14834457 | None:intergenic | 20.0% |
| !!! | TTTATGTTGGCTTATTTTAA+GGG | + | chr4.4:14834308-14834327 | None:intergenic | 20.0% |
| !!! | TTTCAAGTTTGTTTATTGTA+AGG | + | chr4.4:14834439-14834458 | None:intergenic | 20.0% |
| !!! | TTTTATGTTGGCTTATTTTA+AGG | + | chr4.4:14834309-14834328 | None:intergenic | 20.0% |
| ! | AAAAGTTAAGGAAAAGAAAG+AGG | - | chr4.4:14835704-14835723 | MS.gene08969:intron | 25.0% |
| ! | AAATAAGATGTTTCTCTTGT+TGG | - | chr4.4:14836068-14836087 | MS.gene08969:intron | 25.0% |
| ! | AAATAGATGATTGAAGAGAA+GGG | - | chr4.4:14834110-14834129 | MS.gene08969:CDS | 25.0% |
| ! | ATAAGCCAACATAAAAATGT+CGG | - | chr4.4:14834313-14834332 | MS.gene08969:CDS | 25.0% |
| ! | CAAAATATTCTAGACTTTAG+TGG | + | chr4.4:14834657-14834676 | None:intergenic | 25.0% |
| ! | GAAAGATGAAGAAAAAGAAA+AGG | - | chr4.4:14835653-14835672 | MS.gene08969:intron | 25.0% |
| ! | GTTTCTTTAACATTCTGTTT+CGG | - | chr4.4:14833873-14833892 | MS.gene08969:intron | 25.0% |
| ! | TGGTAAAATAAGAATAGAAG+TGG | - | chr4.4:14833303-14833322 | MS.gene08969:CDS | 25.0% |
| ! | TTTCTTTAACATTCTGTTTC+GGG | - | chr4.4:14833874-14833893 | MS.gene08969:intron | 25.0% |
| ! | TTTGAAGATGCTTCAATTAA+CGG | + | chr4.4:14836506-14836525 | None:intergenic | 25.0% |
| !! | AAACAGTATAATGGAAACAA+TGG | - | chr4.4:14835222-14835241 | MS.gene08969:intron | 25.0% |
| !! | AACAGTATAATGGAAACAAT+GGG | - | chr4.4:14835223-14835242 | MS.gene08969:intron | 25.0% |
| !! | AAGGGTTAAAAAGATTTTTG+AGG | - | chr4.4:14833201-14833220 | MS.gene08969:CDS | 25.0% |
| !! | AGGGTTAAAAAGATTTTTGA+GGG | - | chr4.4:14833202-14833221 | MS.gene08969:CDS | 25.0% |
| !! | ATCATCAAGAATTTGTTTGT+AGG | + | chr4.4:14833282-14833301 | None:intergenic | 25.0% |
| !! | CAAACAAATTCTTGATGATA+TGG | - | chr4.4:14833283-14833302 | MS.gene08969:CDS | 25.0% |
| !!! | AATTAAGGATGATAATGGAA+GGG | - | chr4.4:14835320-14835339 | MS.gene08969:intron | 25.0% |
| !!! | ATTGTTGTTTTTTCGGTTTT+AGG | + | chr4.4:14833717-14833736 | None:intergenic | 25.0% |
| !!! | CTTATTTTAAGGGTTAACAA+AGG | + | chr4.4:14834298-14834317 | None:intergenic | 25.0% |
| !!! | GATTTGTTGTTCGTTATTTT+TGG | - | chr4.4:14834703-14834722 | MS.gene08969:CDS | 25.0% |
| AAAAAAGAAAGACAGAGACA+AGG | - | chr4.4:14835035-14835054 | MS.gene08969:intron | 30.0% | |
| AACAAGGAATGCAAGATAAA+TGG | - | chr4.4:14836413-14836432 | MS.gene08969:CDS | 30.0% | |
| AAGAAGGAAAAACAATGATG+TGG | + | chr4.4:14834196-14834215 | None:intergenic | 30.0% | |
| AAGAATAAAGAGGAGAAGAA+AGG | - | chr4.4:14835780-14835799 | MS.gene08969:intron | 30.0% | |
| AGAAGGAAAAACAATGATGT+GGG | + | chr4.4:14834195-14834214 | None:intergenic | 30.0% | |
| AGGAGAATTAAGGATGATAA+TGG | - | chr4.4:14835315-14835334 | MS.gene08969:intron | 30.0% | |
| AGTTTGCAAATTCAAACCAT+AGG | - | chr4.4:14835364-14835383 | MS.gene08969:intron | 30.0% | |
| CAGCAGAAAAGAAAAAGTTA+AGG | - | chr4.4:14835692-14835711 | MS.gene08969:intron | 30.0% | |
| GAAATAGATGATTGAAGAGA+AGG | - | chr4.4:14834109-14834128 | MS.gene08969:CDS | 30.0% | |
| GTGAAGGAATTTGAATGTAT+AGG | + | chr4.4:14835915-14835934 | None:intergenic | 30.0% | |
| GTTAACAAAGGGAAAGAATA+TGG | + | chr4.4:14834286-14834305 | None:intergenic | 30.0% | |
| TACATTCAAATTCCTTCACA+CGG | - | chr4.4:14835916-14835935 | MS.gene08969:intron | 30.0% | |
| TGGATGCTAAGAAAATTGAT+GGG | - | chr4.4:14835469-14835488 | MS.gene08969:intron | 30.0% | |
| TTAAAAGAAAGCAACATTGG+TGG | - | chr4.4:14835888-14835907 | MS.gene08969:intron | 30.0% | |
| TTCTTTAACATTCTGTTTCG+GGG | - | chr4.4:14833875-14833894 | MS.gene08969:intron | 30.0% | |
| TTGGATGCTAAGAAAATTGA+TGG | - | chr4.4:14835468-14835487 | MS.gene08969:intron | 30.0% | |
| ! | AAGCATTTGGAATGGAAATT+TGG | + | chr4.4:14836352-14836371 | None:intergenic | 30.0% |
| ! | AATATTTTGTAGGTAAGCTG+TGG | - | chr4.4:14834668-14834687 | MS.gene08969:CDS | 30.0% |
| ! | AATTCTTGATTTGACAGTTC+CGG | + | chr4.4:14833392-14833411 | None:intergenic | 30.0% |
| ! | AATTTTCATCCAAAAGCTGA+TGG | - | chr4.4:14835552-14835571 | MS.gene08969:intron | 30.0% |
| ! | ACAGTATAATGGAAACAATG+GGG | - | chr4.4:14835224-14835243 | MS.gene08969:intron | 30.0% |
| ! | ATATTTTGTAGGTAAGCTGT+GGG | - | chr4.4:14834669-14834688 | MS.gene08969:CDS | 30.0% |
| ! | CAAGAATTTGTTTGTAGGTT+CGG | + | chr4.4:14833277-14833296 | None:intergenic | 30.0% |
| ! | TCCTTTTTATCCTTTTCCTT+GGG | + | chr4.4:14835003-14835022 | None:intergenic | 30.0% |
| ! | TTCCTTTTTATCCTTTTCCT+TGG | + | chr4.4:14835004-14835023 | None:intergenic | 30.0% |
| !! | GAATTAAGGATGATAATGGA+AGG | - | chr4.4:14835319-14835338 | MS.gene08969:intron | 30.0% |
| !! | GGGTTAAAAAGATTTTTGAG+GGG | - | chr4.4:14833203-14833222 | MS.gene08969:CDS | 30.0% |
| !!! | TTTTAATTTATTCAGCTCCG+TGG | + | chr4.4:14835874-14835893 | None:intergenic | 30.0% |
| AAATACTTCCCCATAGGTTT+GGG | + | chr4.4:14835582-14835601 | None:intergenic | 35.0% | |
| AAATCAGACCATTCCACTTT+AGG | + | chr4.4:14836575-14836594 | None:intergenic | 35.0% | |
| AACTAAAACCCCAAAAAGAG+GGG | + | chr4.4:14834622-14834641 | None:intergenic | 35.0% | |
| AAGATAAGAAGGACAAAGAG+AGG | - | chr4.4:14834941-14834960 | MS.gene08969:intron | 35.0% | |
| AAGTGTAAAAACCCCTTGTT+TGG | + | chr4.4:14834242-14834261 | None:intergenic | 35.0% | |
| ACAACTAAAACCCCAAAAAG+AGG | + | chr4.4:14834624-14834643 | None:intergenic | 35.0% | |
| AGAGAAGAAAGATAAGACGA+AGG | - | chr4.4:14835830-14835849 | MS.gene08969:intron | 35.0% | |
| AGGGAAACAGAAAGAAAAGA+AGG | + | chr4.4:14834212-14834231 | None:intergenic | 35.0% | |
| CAACTAAAACCCCAAAAAGA+GGG | + | chr4.4:14834623-14834642 | None:intergenic | 35.0% | |
| CACAGAAAATGGAAGGATAT+TGG | - | chr4.4:14836319-14836338 | MS.gene08969:intron | 35.0% | |
| CAGTGCTAAGATAGAAAACA+AGG | - | chr4.4:14836397-14836416 | MS.gene08969:CDS | 35.0% | |
| CATATATTCGGTACCTAAAG+TGG | - | chr4.4:14836559-14836578 | MS.gene08969:CDS | 35.0% | |
| CTCTGACCTATGAGATATAA+TGG | - | chr4.4:14836106-14836125 | MS.gene08969:intron | 35.0% | |
| GAAATCAAGCCTGATAAGAA+GGG | - | chr4.4:14835174-14835193 | MS.gene08969:intron | 35.0% | |
| GAACTGTTAAGTTTATGGCT+AGG | - | chr4.4:14835397-14835416 | MS.gene08969:intron | 35.0% | |
| GCTAAGAAAATTGATGGGAA+AGG | - | chr4.4:14835474-14835493 | MS.gene08969:intron | 35.0% | |
| GTGCAATATAGTCCAAAAGA+AGG | - | chr4.4:14834494-14834513 | MS.gene08969:CDS | 35.0% | |
| GTTAAGGAAAAGAAAGAGGA+AGG | - | chr4.4:14835708-14835727 | MS.gene08969:intron | 35.0% | |
| TAAAGTGGAATGGTCTGATT+TGG | - | chr4.4:14836574-14836593 | MS.gene08969:CDS | 35.0% | |
| TATCAGTCCAACCAAACAAA+TGG | + | chr4.4:14833994-14834013 | None:intergenic | 35.0% | |
| TCAACATTCGATGATGTTAG+CGG | + | chr4.4:14833446-14833465 | None:intergenic | 35.0% | |
| TGAACTGTAGTATTTCCAAG+AGG | + | chr4.4:14835519-14835538 | None:intergenic | 35.0% | |
| TGACCTATGAGATATAATGG+CGG | - | chr4.4:14836109-14836128 | MS.gene08969:intron | 35.0% | |
| TGCAAATTCAAACCATAGGA+TGG | - | chr4.4:14835368-14835387 | MS.gene08969:intron | 35.0% | |
| TTCAAACGAAAGATGTGAGT+TGG | - | chr4.4:14834366-14834385 | MS.gene08969:CDS | 35.0% | |
| TTCTCTCTCTTATCTAGTGT+GGG | + | chr4.4:14834092-14834111 | None:intergenic | 35.0% | |
| TTCTTACAGCCAATGAGAAT+TGG | - | chr4.4:14836258-14836277 | MS.gene08969:intron | 35.0% | |
| TTGGATGAAAATTTCCAGCA+TGG | + | chr4.4:14835545-14835564 | None:intergenic | 35.0% | |
| TTTCTCTCTCTTATCTAGTG+TGG | + | chr4.4:14834093-14834112 | None:intergenic | 35.0% | |
| ! | ATGATTTGCAGGAAAAACAG+AGG | - | chr4.4:14834902-14834921 | MS.gene08969:intron | 35.0% |
| ! | GAAGTATTTCGACAAGAACT+TGG | - | chr4.4:14835593-14835612 | MS.gene08969:intron | 35.0% |
| ! | TGATTTGCAGGAAAAACAGA+GGG | - | chr4.4:14834903-14834922 | MS.gene08969:intron | 35.0% |
| ! | TTGAGGGGTACATAATTCAT+GGG | - | chr4.4:14833218-14833237 | MS.gene08969:CDS | 35.0% |
| ! | TTGTTGGTCTCAAAAGATTC+TGG | - | chr4.4:14833349-14833368 | MS.gene08969:CDS | 35.0% |
| ! | TTTGAGGGGTACATAATTCA+TGG | - | chr4.4:14833217-14833236 | MS.gene08969:CDS | 35.0% |
| !! | CTGTTTTTCCTGCAAATCAT+CGG | + | chr4.4:14834902-14834921 | None:intergenic | 35.0% |
| !! | CTTTAGGTACCGAATATATG+CGG | + | chr4.4:14836559-14836578 | None:intergenic | 35.0% |
| AAAACTCAGGGATAAGGGTT+TGG | - | chr4.4:14835449-14835468 | MS.gene08969:intron | 40.0% | |
| AAAAGAGGGAGAAAGAAGGA+CGG | - | chr4.4:14834968-14834987 | MS.gene08969:intron | 40.0% | |
| AAAGAGGAGAAGAAAGGACA+CGG | - | chr4.4:14835786-14835805 | MS.gene08969:intron | 40.0% | |
| AACCATTGGAGGGAAAGAAA+AGG | - | chr4.4:14835620-14835639 | MS.gene08969:intron | 40.0% | |
| AACCCGCCATTATATCTCAT+AGG | + | chr4.4:14836115-14836134 | None:intergenic | 40.0% | |
| AACCCTTACAATCCAACCAA+TGG | + | chr4.4:14833188-14833207 | None:intergenic | 40.0% | |
| AAGAACTTGGAAGCAACCAT+TGG | - | chr4.4:14835606-14835625 | MS.gene08969:intron | 40.0% | |
| AAGGAAAAGAGGGAGAAAGA+AGG | - | chr4.4:14834964-14834983 | MS.gene08969:intron | 40.0% | |
| AAGGACAAGGACAAAGACAA+AGG | - | chr4.4:14835054-14835073 | MS.gene08969:intron | 40.0% | |
| AAGTGTGAGGATGAAGAGAT+TGG | - | chr4.4:14833326-14833345 | MS.gene08969:CDS | 40.0% | |
| AAGTTTATGGCTAGGAGTAG+TGG | - | chr4.4:14835405-14835424 | MS.gene08969:intron | 40.0% | |
| ACAAAGAGACCCTTCTTATC+AGG | + | chr4.4:14835186-14835205 | None:intergenic | 40.0% | |
| ACAAAGAGAGGAAGGAAAAG+AGG | - | chr4.4:14834953-14834972 | MS.gene08969:intron | 40.0% | |
| ACCCTTACAATCCAACCAAT+GGG | + | chr4.4:14833187-14833206 | None:intergenic | 40.0% | |
| AGAGGGCAGACAATTTAAGA+AGG | - | chr4.4:14833913-14833932 | MS.gene08969:CDS | 40.0% | |
| AGTAAAACCAGTACTGCTGA+TGG | - | chr4.4:14835099-14835118 | MS.gene08969:intron | 40.0% | |
| AGTATGGAATGACATATGGC+AGG | + | chr4.4:14836730-14836749 | None:intergenic | 40.0% | |
| ATATATGCGGCTTAGGTACT+TGG | + | chr4.4:14836546-14836565 | None:intergenic | 40.0% | |
| ATGGAATACCCAAACCTATG+GGG | - | chr4.4:14835571-14835590 | MS.gene08969:intron | 40.0% | |
| ATTATATCCACTAGGGGAGA+AGG | + | chr4.4:14834160-14834179 | None:intergenic | 40.0% | |
| ATTCGGTACCTAAAGTGGAA+TGG | - | chr4.4:14836564-14836583 | MS.gene08969:CDS | 40.0% | |
| CAAAGAGAGGAAGGAAAAGA+GGG | - | chr4.4:14834954-14834973 | MS.gene08969:intron | 40.0% | |
| CCATTCCAAATGCTTCAGAT+AGG | - | chr4.4:14836357-14836376 | MS.gene08969:intron | 40.0% | |
| CGAAGTTCTCTCCATTTGTT+TGG | - | chr4.4:14833980-14833999 | MS.gene08969:CDS | 40.0% | |
| CGAGGGAACTGTTAAGTTTA+TGG | - | chr4.4:14835392-14835411 | MS.gene08969:intron | 40.0% | |
| CTCTAATCTTCAATGAGACG+AGG | - | chr4.4:14834744-14834763 | MS.gene08969:CDS | 40.0% | |
| GAAATACTTCCCCATAGGTT+TGG | + | chr4.4:14835583-14835602 | None:intergenic | 40.0% | |
| GACCTATGAGATATAATGGC+GGG | - | chr4.4:14836110-14836129 | MS.gene08969:intron | 40.0% | |
| GAGTAGTTAGAGAGCTAGTT+AGG | + | chr4.4:14833763-14833782 | None:intergenic | 40.0% | |
| GATGGAATACCCAAACCTAT+GGG | - | chr4.4:14835570-14835589 | MS.gene08969:intron | 40.0% | |
| GCATACTGAACTCAAAACCA+CGG | - | chr4.4:14835854-14835873 | MS.gene08969:intron | 40.0% | |
| GCCCAAGGAAAAGGATAAAA+AGG | - | chr4.4:14834999-14835018 | MS.gene08969:intron | 40.0% | |
| GCGTTGAAAATCCCAAGAAA+CGG | - | chr4.4:14835970-14835989 | MS.gene08969:intron | 40.0% | |
| GCTTCAATTAACGGAACAAC+TGG | + | chr4.4:14836497-14836516 | None:intergenic | 40.0% | |
| GGAAAAGAAAGAGGAAGGAA+AGG | - | chr4.4:14835713-14835732 | MS.gene08969:intron | 40.0% | |
| GGAAATCAAGCCTGATAAGA+AGG | - | chr4.4:14835173-14835192 | MS.gene08969:intron | 40.0% | |
| GGATAAAAAGCCCAAGGAAA+AGG | - | chr4.4:14834990-14835009 | MS.gene08969:intron | 40.0% | |
| GGGAATCAGGTTATTGAGTT+TGG | - | chr4.4:14834533-14834552 | MS.gene08969:CDS | 40.0% | |
| GGTGAAAAACTCAGGGATAA+GGG | - | chr4.4:14835444-14835463 | MS.gene08969:intron | 40.0% | |
| GTACCTAAGCCGCATATATT+CGG | - | chr4.4:14836547-14836566 | MS.gene08969:CDS | 40.0% | |
| GTATGGAATGACATATGGCA+GGG | + | chr4.4:14836729-14836748 | None:intergenic | 40.0% | |
| GTTCTCTCCATTTGTTTGGT+TGG | - | chr4.4:14833984-14834003 | MS.gene08969:CDS | 40.0% | |
| TAAGAAGGACAAAGAGAGGA+AGG | - | chr4.4:14834945-14834964 | MS.gene08969:intron | 40.0% | |
| TAAGTCATGCTCTCAGCAAA+GGG | - | chr4.4:14833607-14833626 | MS.gene08969:CDS | 40.0% | |
| TAATGGAAACAATGGGGAGA+TGG | - | chr4.4:14835230-14835249 | MS.gene08969:intron | 40.0% | |
| TACTTGCACGATGACTATTG+TGG | - | chr4.4:14833536-14833555 | MS.gene08969:CDS | 40.0% | |
| TATCAGGCTTGATTTCCTTC+TGG | + | chr4.4:14835170-14835189 | None:intergenic | 40.0% | |
| TCGAACTCCAGAAGGAATTT+GGG | + | chr4.4:14835294-14835313 | None:intergenic | 40.0% | |
| TCTCTCTCTTATCTAGTGTG+GGG | + | chr4.4:14834091-14834110 | None:intergenic | 40.0% | |
| TCTTAGCCACAAAAGCGATA+AGG | - | chr4.4:14833676-14833695 | MS.gene08969:intron | 40.0% | |
| TGAAAATCCCAAGAAACGGA+AGG | - | chr4.4:14835974-14835993 | MS.gene08969:intron | 40.0% | |
| TGATGGAATACCCAAACCTA+TGG | - | chr4.4:14835569-14835588 | MS.gene08969:intron | 40.0% | |
| TTCTCTCTCTTGTTGCTCAT+AGG | - | chr4.4:14834806-14834825 | MS.gene08969:intron | 40.0% | |
| TTGTCGAAATACTTCCCCAT+AGG | + | chr4.4:14835588-14835607 | None:intergenic | 40.0% | |
| ! | AAAAACCCCTTGTTTGGAAG+AGG | + | chr4.4:14834236-14834255 | None:intergenic | 40.0% |
| ! | AAAACCCCTTGTTTGGAAGA+GGG | + | chr4.4:14834235-14834254 | None:intergenic | 40.0% |
| ! | AACCTTTTCTTTCCCTCCAA+TGG | + | chr4.4:14835625-14835644 | None:intergenic | 40.0% |
| ! | AATATCAAGCTTTGGCTGAC+AGG | + | chr4.4:14833806-14833825 | None:intergenic | 40.0% |
| ! | AGAATAGAAGTGGAAGTGTG+AGG | - | chr4.4:14833313-14833332 | MS.gene08969:CDS | 40.0% |
| ! | AGGATGAAGAGATTGGTTGT+TGG | - | chr4.4:14833333-14833352 | MS.gene08969:CDS | 40.0% |
| ! | ATCCCATTGGTTGGATTGTA+AGG | - | chr4.4:14833182-14833201 | MS.gene08969:CDS | 40.0% |
| ! | ATCCTTCCATTTTCTGTGAG+AGG | + | chr4.4:14836317-14836336 | None:intergenic | 40.0% |
| ! | ATGTGTGTTTCCCCTCTTTT+TGG | - | chr4.4:14834609-14834628 | MS.gene08969:CDS | 40.0% |
| ! | CCTATCTGAAGCATTTGGAA+TGG | + | chr4.4:14836360-14836379 | None:intergenic | 40.0% |
| ! | CTTTTGTGGCTAAGAACTTG+TGG | + | chr4.4:14833671-14833690 | None:intergenic | 40.0% |
| ! | GTGCTCCGACATTTTTATGT+TGG | + | chr4.4:14834321-14834340 | None:intergenic | 40.0% |
| ! | GTTTTCTATCTTAGCACTGC+TGG | + | chr4.4:14836396-14836415 | None:intergenic | 40.0% |
| ! | TCCCATTGGTTGGATTGTAA+GGG | - | chr4.4:14833183-14833202 | MS.gene08969:CDS | 40.0% |
| ! | TCCTTCCATTTTCTGTGAGA+GGG | + | chr4.4:14836316-14836335 | None:intergenic | 40.0% |
| ! | TGTGTGTTTCCCCTCTTTTT+GGG | - | chr4.4:14834610-14834629 | MS.gene08969:CDS | 40.0% |
| ! | TTGGGTATTCCATCAGCTTT+TGG | + | chr4.4:14835564-14835583 | None:intergenic | 40.0% |
| ! | TTTTCCTGCAAATCATCGGT+CGG | + | chr4.4:14834898-14834917 | None:intergenic | 40.0% |
| !! | ACAGCTTTTTCCCATACTTG+CGG | + | chr4.4:14836680-14836699 | None:intergenic | 40.0% |
| !! | CTGATTTGGATGGTCAAGAA+TGG | - | chr4.4:14836588-14836607 | MS.gene08969:intron | 40.0% |
| !! | TTATTTGAGGGTACTGCAAG+TGG | + | chr4.4:14836455-14836474 | None:intergenic | 40.0% |
| !! | TTCACACGGATTAGCAAGAA+CGG | - | chr4.4:14835930-14835949 | MS.gene08969:intron | 40.0% |
| !!! | TTTTTTTCCTTCTCCCCTAG+TGG | - | chr4.4:14834150-14834169 | MS.gene08969:CDS | 40.0% |
| AAAGAGGGAGAAAGAAGGAC+GGG | - | chr4.4:14834969-14834988 | MS.gene08969:intron | 45.0% | |
| AACGGCCATGAGAATTCTGT+TGG | - | chr4.4:14835948-14835967 | MS.gene08969:intron | 45.0% | |
| AACTTGGAAGCAACCATTGG+AGG | - | chr4.4:14835609-14835628 | MS.gene08969:intron | 45.0% | |
| AAGAGGAGAAGAAAGGACAC+GGG | - | chr4.4:14835787-14835806 | MS.gene08969:intron | 45.0% | |
| AAGGGGTAAGGGATAAGTCT+TGG | - | chr4.4:14833625-14833644 | MS.gene08969:CDS | 45.0% | |
| AAGTCATGCTCTCAGCAAAG+GGG | - | chr4.4:14833608-14833627 | MS.gene08969:CDS | 45.0% | |
| ACATTCGATGATGTTAGCGG+TGG | + | chr4.4:14833443-14833462 | None:intergenic | 45.0% | |
| ACCCTCTCACAGAAAATGGA+AGG | - | chr4.4:14836312-14836331 | MS.gene08969:intron | 45.0% | |
| ACTACAGTTCAGAACCATGC+TGG | - | chr4.4:14835528-14835547 | MS.gene08969:intron | 45.0% | |
| ACTTGGAAGCAACCATTGGA+GGG | - | chr4.4:14835610-14835629 | MS.gene08969:intron | 45.0% | |
| AGAGAACAATCATCTGGCTG+AGG | - | chr4.4:14835257-14835276 | MS.gene08969:intron | 45.0% | |
| AGGTACTTGGTATCTGGATG+AGG | + | chr4.4:14836533-14836552 | None:intergenic | 45.0% | |
| CAACGCCAACAGAATTCTCA+TGG | + | chr4.4:14835956-14835975 | None:intergenic | 45.0% | |
| CAAGGATCCCAAATTCCTTC+TGG | - | chr4.4:14835284-14835303 | MS.gene08969:intron | 45.0% | |
| CGGTGAAAAACTCAGGGATA+AGG | - | chr4.4:14835443-14835462 | MS.gene08969:intron | 45.0% | |
| CTAAGTCATGCTCTCAGCAA+AGG | - | chr4.4:14833606-14833625 | MS.gene08969:CDS | 45.0% | |
| CTCGAACTCCAGAAGGAATT+TGG | + | chr4.4:14835295-14835314 | None:intergenic | 45.0% | |
| CTTACTCGGCCAATTCTCAT+TGG | + | chr4.4:14836270-14836289 | None:intergenic | 45.0% | |
| GAAAGACAGAGACAAGGACA+AGG | - | chr4.4:14835041-14835060 | MS.gene08969:intron | 45.0% | |
| GAGGAGTTTAAGAGGGAATG+CGG | - | chr4.4:14833567-14833586 | MS.gene08969:CDS | 45.0% | |
| GAGTCAAATGGAGTTCTACG+TGG | - | chr4.4:14836002-14836021 | MS.gene08969:intron | 45.0% | |
| GATGACTATTGTGGTTCCGT+AGG | - | chr4.4:14833545-14833564 | MS.gene08969:CDS | 45.0% | |
| GGAGTTCGAGAGGAGAATTA+AGG | - | chr4.4:14835305-14835324 | MS.gene08969:intron | 45.0% | |
| GGCTAGAGAGAACAATCATC+TGG | - | chr4.4:14835251-14835270 | MS.gene08969:intron | 45.0% | |
| GGTAAGGGATAAGTCTTGGT+GGG | - | chr4.4:14833629-14833648 | MS.gene08969:CDS | 45.0% | |
| GGTGTGGAGAGAAAATGAGA+GGG | - | chr4.4:14833896-14833915 | MS.gene08969:intron | 45.0% | |
| GTACCGAATATATGCGGCTT+AGG | + | chr4.4:14836553-14836572 | None:intergenic | 45.0% | |
| GTTCTTGCTAATCCGTGTGA+AGG | + | chr4.4:14835931-14835950 | None:intergenic | 45.0% | |
| TAACATTCTGTTTCGGGGTG+TGG | - | chr4.4:14833880-14833899 | MS.gene08969:intron | 45.0% | |
| TACTTGGTATCTGGATGAGG+TGG | + | chr4.4:14836530-14836549 | None:intergenic | 45.0% | |
| TCAAACCATAGGATGGACGA+GGG | - | chr4.4:14835375-14835394 | MS.gene08969:intron | 45.0% | |
| TCAGTCTCCTTCCGTTTCTT+GGG | + | chr4.4:14835984-14836003 | None:intergenic | 45.0% | |
| TCATCTTTACACTCACCGCA+CGG | - | chr4.4:14833466-14833485 | MS.gene08969:CDS | 45.0% | |
| TCCCTCTTAAACTCCTCCTA+CGG | + | chr4.4:14833564-14833583 | None:intergenic | 45.0% | |
| TCCGTAGGAGGAGTTTAAGA+GGG | - | chr4.4:14833560-14833579 | MS.gene08969:CDS | 45.0% | |
| TCTCTCTTGTTGCTCATAGG+TGG | - | chr4.4:14834809-14834828 | MS.gene08969:intron | 45.0% | |
| TGGTGAAATCTTCAGAGGCT+GGG | - | chr4.4:14836648-14836667 | MS.gene08969:intron | 45.0% | |
| TTCAAACCATAGGATGGACG+AGG | - | chr4.4:14835374-14835393 | MS.gene08969:intron | 45.0% | |
| TTCACAAGAAAGAGAACCCG+TGG | - | chr4.4:14836628-14836647 | MS.gene08969:intron | 45.0% | |
| TTCCGTAGGAGGAGTTTAAG+AGG | - | chr4.4:14833559-14833578 | MS.gene08969:CDS | 45.0% | |
| TTCTATCTTAGCACTGCTGG+TGG | + | chr4.4:14836393-14836412 | None:intergenic | 45.0% | |
| TTGTGGCTAAGAACTTGTGG+TGG | + | chr4.4:14833668-14833687 | None:intergenic | 45.0% | |
| ! | AGCCTCTGAAGATTTCACCA+CGG | + | chr4.4:14836648-14836667 | None:intergenic | 45.0% |
| ! | AGTAGTGGAACCTTGCATGA+TGG | - | chr4.4:14835420-14835439 | MS.gene08969:intron | 45.0% |
| ! | GATGGTCTTGGCAACTTACT+CGG | + | chr4.4:14836284-14836303 | None:intergenic | 45.0% |
| ! | GTGTGTTTCCCCTCTTTTTG+GGG | - | chr4.4:14834611-14834630 | MS.gene08969:CDS | 45.0% |
| ! | TATTCCGACCGATGATTTGC+AGG | - | chr4.4:14834891-14834910 | MS.gene08969:intron | 45.0% |
| ! | TCCATTTTCTGTGAGAGGGT+GGG | + | chr4.4:14836312-14836331 | None:intergenic | 45.0% |
| ! | TGGAAGGGCTGGTAATCAAT+TGG | - | chr4.4:14835335-14835354 | MS.gene08969:intron | 45.0% |
| ! | TTCCATTTTCTGTGAGAGGG+TGG | + | chr4.4:14836313-14836332 | None:intergenic | 45.0% |
| ! | TTTTTCACCGCCATCATGCA+AGG | + | chr4.4:14835433-14835452 | None:intergenic | 45.0% |
| !! | AAAGTGCAGAGAGCGTTTGT+AGG | - | chr4.4:14833247-14833266 | MS.gene08969:CDS | 45.0% |
| !! | AAGGATGATAATGGAAGGGC+TGG | - | chr4.4:14835324-14835343 | MS.gene08969:intron | 45.0% |
| !! | AAGTGCAGAGAGCGTTTGTA+GGG | - | chr4.4:14833248-14833267 | MS.gene08969:CDS | 45.0% |
| !! | AATTCCTTCTGGAGTTCGAG+AGG | - | chr4.4:14835295-14835314 | MS.gene08969:intron | 45.0% |
| !! | ATGATGGCGGTGAAAAACTC+AGG | - | chr4.4:14835436-14835455 | MS.gene08969:intron | 45.0% |
| !! | GCAGATCCTTATCGCTTTTG+TGG | + | chr4.4:14833685-14833704 | None:intergenic | 45.0% |
| !! | GCAGTGGGAGTCTTATTTGA+GGG | + | chr4.4:14836467-14836486 | None:intergenic | 45.0% |
| !! | GTGGAATGGTCTGATTTGGA+TGG | - | chr4.4:14836578-14836597 | MS.gene08969:CDS | 45.0% |
| !! | TGATGGCGGTGAAAAACTCA+GGG | - | chr4.4:14835437-14835456 | MS.gene08969:intron | 45.0% |
| !! | TGCAGTGGGAGTCTTATTTG+AGG | + | chr4.4:14836468-14836487 | None:intergenic | 45.0% |
| AACAACTGGCACAGTTGCAG+TGG | + | chr4.4:14836483-14836502 | None:intergenic | 50.0% | |
| ACAACTGGCACAGTTGCAGT+GGG | + | chr4.4:14836482-14836501 | None:intergenic | 50.0% | |
| ACACGGGAAGGACAAAGACA+GGG | - | chr4.4:14835803-14835822 | MS.gene08969:intron | 50.0% | |
| ACCAGTACTGCTGATGGCAA+AGG | - | chr4.4:14835105-14835124 | MS.gene08969:intron | 50.0% | |
| ACCCGTGGTGAAATCTTCAG+AGG | - | chr4.4:14836643-14836662 | MS.gene08969:intron | 50.0% | |
| AGGACGGGATAAAAAGCCCA+AGG | - | chr4.4:14834984-14835003 | MS.gene08969:intron | 50.0% | |
| AGGACTTTCTGGACAAGCAG+AGG | - | chr4.4:14835125-14835144 | MS.gene08969:intron | 50.0% | |
| AGTGGAACCTTGCATGATGG+CGG | - | chr4.4:14835423-14835442 | MS.gene08969:intron | 50.0% | |
| ATAAGTCTTGGTGGGAAGCG+TGG | - | chr4.4:14833637-14833656 | MS.gene08969:CDS | 50.0% | |
| ATCGTGCAAGTACCACCATC+TGG | + | chr4.4:14833528-14833547 | None:intergenic | 50.0% | |
| ATGATGTTAGCGGTGGTGCT+TGG | + | chr4.4:14833436-14833455 | None:intergenic | 50.0% | |
| ATGCTCTCAGCAAAGGGGTA+AGG | - | chr4.4:14833613-14833632 | MS.gene08969:CDS | 50.0% | |
| CACTGCAGGTAAACTCCAGA+AGG | - | chr4.4:14835152-14835171 | MS.gene08969:intron | 50.0% | |
| CCAAAAGAAGGACGCGAACT+GGG | - | chr4.4:14834506-14834525 | MS.gene08969:CDS | 50.0% | |
| CCAAATGCTTCAGATAGGCC+AGG | - | chr4.4:14836362-14836381 | MS.gene08969:intron | 50.0% | |
| CCTTCACCAAAACCACCAGA+TGG | - | chr4.4:14833510-14833529 | MS.gene08969:CDS | 50.0% | |
| CGGAAGGAGACTGAGTCAAA+TGG | - | chr4.4:14835990-14836009 | MS.gene08969:intron | 50.0% | |
| CGGCTTAGGTACTTGGTATC+TGG | + | chr4.4:14836539-14836558 | None:intergenic | 50.0% | |
| CTCAGTCTCCTTCCGTTTCT+TGG | + | chr4.4:14835985-14836004 | None:intergenic | 50.0% | |
| CTTGATCAGTGTTAGCCGTG+CGG | + | chr4.4:14833484-14833503 | None:intergenic | 50.0% | |
| GACTATTGTGGTTCCGTAGG+AGG | - | chr4.4:14833548-14833567 | MS.gene08969:CDS | 50.0% | |
| GCTGATGGCAAAGGACTTTC+TGG | - | chr4.4:14835114-14835133 | MS.gene08969:intron | 50.0% | |
| GGACTTTCTGGACAAGCAGA+GGG | - | chr4.4:14835126-14835145 | MS.gene08969:intron | 50.0% | |
| GGCAGGGCAAAAATATCTGC+TGG | + | chr4.4:14836713-14836732 | None:intergenic | 50.0% | |
| GGGTAAGGGATAAGTCTTGG+TGG | - | chr4.4:14833628-14833647 | MS.gene08969:CDS | 50.0% | |
| GGGTGTGGAGAGAAAATGAG+AGG | - | chr4.4:14833895-14833914 | MS.gene08969:intron | 50.0% | |
| GGTGAAATCTTCAGAGGCTG+GGG | - | chr4.4:14836649-14836668 | MS.gene08969:intron | 50.0% | |
| GTGGTGAAATCTTCAGAGGC+TGG | - | chr4.4:14836647-14836666 | MS.gene08969:intron | 50.0% | |
| TCAAAAGATTCTGGCCAGCC+CGG | - | chr4.4:14833358-14833377 | MS.gene08969:CDS | 50.0% | |
| TCACCAAAACCACCAGATGG+TGG | - | chr4.4:14833513-14833532 | MS.gene08969:CDS | 50.0% | |
| TCATCTGGCTGAGGAGAACA+AGG | - | chr4.4:14835266-14835285 | MS.gene08969:intron | 50.0% | |
| TCCAAAAGAAGGACGCGAAC+TGG | - | chr4.4:14834505-14834524 | MS.gene08969:CDS | 50.0% | |
| TCCCACCCTCTCACAGAAAA+TGG | - | chr4.4:14836308-14836327 | MS.gene08969:intron | 50.0% | |
| TCCCTCCCTCTTCCAAACAA+GGG | - | chr4.4:14834227-14834246 | MS.gene08969:CDS | 50.0% | |
| TCCTTTGCCATCAGCAGTAC+TGG | + | chr4.4:14835109-14835128 | None:intergenic | 50.0% | |
| TGCTCTCAGCAAAGGGGTAA+GGG | - | chr4.4:14833614-14833633 | MS.gene08969:CDS | 50.0% | |
| TGGGGAAACACCGCAAGTAT+GGG | - | chr4.4:14836667-14836686 | MS.gene08969:intron | 50.0% | |
| TGGGGATAGATCCCATTGGT+TGG | - | chr4.4:14833173-14833192 | MS.gene08969:CDS | 50.0% | |
| TTCCCTCCCTCTTCCAAACA+AGG | - | chr4.4:14834226-14834245 | MS.gene08969:CDS | 50.0% | |
| TTCTCCTCTCGAACTCCAGA+AGG | + | chr4.4:14835302-14835321 | None:intergenic | 50.0% | |
| ! | CCTGGCCTATCTGAAGCATT+TGG | + | chr4.4:14836365-14836384 | None:intergenic | 50.0% |
| ! | GCCTCTGAAGATTTCACCAC+GGG | + | chr4.4:14836647-14836666 | None:intergenic | 50.0% |
| ! | GTACCACCATCTGGTGGTTT+TGG | + | chr4.4:14833519-14833538 | None:intergenic | 50.0% |
| ! | TGGGAAAGGAATGCTTGCTG+AGG | - | chr4.4:14835488-14835507 | MS.gene08969:intron | 50.0% |
| !!! | CCATCTGGTGGTTTTGGTGA+AGG | + | chr4.4:14833513-14833532 | None:intergenic | 50.0% |
| !!! | TCTGGTGGTTTTGGTGAAGG+TGG | + | chr4.4:14833510-14833529 | None:intergenic | 50.0% |
| AAGGACGCGAACTGGGTTGT+GGG | - | chr4.4:14834513-14834532 | MS.gene08969:CDS | 55.0% | |
| ACAGTTCCGGCAAAGACACC+GGG | + | chr4.4:14833379-14833398 | None:intergenic | 55.0% | |
| CAGTTCCCTCGTCCATCCTA+TGG | + | chr4.4:14835383-14835402 | None:intergenic | 55.0% | |
| CCCTCCCTCTTCCAAACAAG+GGG | - | chr4.4:14834228-14834247 | MS.gene08969:CDS | 55.0% | |
| CGAACTGGGTTGTGGGAATC+AGG | - | chr4.4:14834520-14834539 | MS.gene08969:CDS | 55.0% | |
| CTGGGGAAACACCGCAAGTA+TGG | - | chr4.4:14836666-14836685 | MS.gene08969:intron | 55.0% | |
| CTTGCTGAGGTACGACCTCT+TGG | - | chr4.4:14835501-14835520 | MS.gene08969:intron | 55.0% | |
| GACACGGGAAGGACAAAGAC+AGG | - | chr4.4:14835802-14835821 | MS.gene08969:intron | 55.0% | |
| GACAGTTCCGGCAAAGACAC+CGG | + | chr4.4:14833380-14833399 | None:intergenic | 55.0% | |
| GGAGAAGAAAGGACACGGGA+AGG | - | chr4.4:14835791-14835810 | MS.gene08969:intron | 55.0% | |
| GTGCAAGTACCACCATCTGG+TGG | + | chr4.4:14833525-14833544 | None:intergenic | 55.0% | |
| TTCTGTGAGAGGGTGGGAAG+AGG | + | chr4.4:14836306-14836325 | None:intergenic | 55.0% | |
| ! | ACCCCTTGTTTGGAAGAGGG+AGG | + | chr4.4:14834232-14834251 | None:intergenic | 55.0% |
| ! | CCCAGTTCGCGTCCTTCTTT+TGG | + | chr4.4:14834509-14834528 | None:intergenic | 55.0% |
| ! | CCCCTTGTTTGGAAGAGGGA+GGG | + | chr4.4:14834231-14834250 | None:intergenic | 55.0% |
| CAAGCAGAGGGTCTCACTGC+AGG | - | chr4.4:14835138-14835157 | MS.gene08969:intron | 60.0% | |
| GAAGGACGCGAACTGGGTTG+TGG | - | chr4.4:14834512-14834531 | MS.gene08969:CDS | 60.0% | |
| GCACTGCTGGTGGCTATTCC+TGG | + | chr4.4:14836383-14836402 | None:intergenic | 60.0% | |
| GGGTGGGAAGAGGATGGTCT+TGG | + | chr4.4:14836296-14836315 | None:intergenic | 60.0% | |
| GTGAGAGGGTGGGAAGAGGA+TGG | + | chr4.4:14836302-14836321 | None:intergenic | 60.0% | |
| TTCCGGCAAAGACACCGGGC+TGG | + | chr4.4:14833375-14833394 | None:intergenic | 65.0% | |
| GGCCAGCCCGGTGTCTTTGC+CGG | - | chr4.4:14833370-14833389 | MS.gene08969:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 14833172 | 14836751 | 14833172 | ID=MS.gene08969 |
| chr4.4 | mRNA | 14833172 | 14836751 | 14833172 | ID=MS.gene08969.t1;Parent=MS.gene08969 |
| chr4.4 | exon | 14836725 | 14836751 | 14836725 | ID=MS.gene08969.t1.exon1;Parent=MS.gene08969.t1 |
| chr4.4 | CDS | 14836725 | 14836751 | 14836725 | ID=cds.MS.gene08969.t1;Parent=MS.gene08969.t1 |
| chr4.4 | exon | 14836389 | 14836603 | 14836389 | ID=MS.gene08969.t1.exon2;Parent=MS.gene08969.t1 |
| chr4.4 | CDS | 14836389 | 14836603 | 14836389 | ID=cds.MS.gene08969.t1;Parent=MS.gene08969.t1 |
| chr4.4 | exon | 14833900 | 14834813 | 14833900 | ID=MS.gene08969.t1.exon3;Parent=MS.gene08969.t1 |
| chr4.4 | CDS | 14833900 | 14834813 | 14833900 | ID=cds.MS.gene08969.t1;Parent=MS.gene08969.t1 |
| chr4.4 | exon | 14833172 | 14833656 | 14833172 | ID=MS.gene08969.t1.exon4;Parent=MS.gene08969.t1 |
| chr4.4 | CDS | 14833172 | 14833656 | 14833172 | ID=cds.MS.gene08969.t1;Parent=MS.gene08969.t1 |
| Gene Sequence |
| Protein sequence |
