Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09280.t1 | XP_013446625.1 | 98.8 | 160 | 2 | 0 | 1 | 160 | 34 | 193 | 2.70E-76 | 294.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09280.t1 | Q9SDN0 | 54.4 | 158 | 66 | 3 | 2 | 157 | 40 | 193 | 9.3e-38 | 157.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09280.t1 | A0A072TT90 | 98.8 | 160 | 2 | 0 | 1 | 160 | 34 | 193 | 1.9e-76 | 294.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene09280 | 0.800559 | 1.36E-48 | -1.69E-46 |
| MS.gene050904 | MS.gene09280 | 0.82651 | 2.61E-54 | -1.69E-46 |
| MS.gene05470 | MS.gene09280 | 0.807306 | 5.39E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene09280 | 0.803764 | 2.98E-49 | -1.69E-46 |
| MS.gene056266 | MS.gene09280 | 0.812828 | 3.48E-51 | -1.69E-46 |
| MS.gene056998 | MS.gene09280 | -0.806938 | 6.45E-50 | -1.69E-46 |
| MS.gene059837 | MS.gene09280 | 0.845055 | 5.15E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09280.t1 | MTR_8g081620 | 98.125 | 160 | 3 | 0 | 1 | 160 | 34 | 193 | 1.63e-116 | 327 |
| MS.gene09280.t1 | MTR_4g094275 | 34.848 | 132 | 75 | 4 | 27 | 156 | 51 | 173 | 5.76e-18 | 76.6 |
| MS.gene09280.t1 | MTR_5g022210 | 48.485 | 66 | 34 | 0 | 29 | 94 | 74 | 139 | 1.01e-14 | 68.2 |
| MS.gene09280.t1 | MTR_5g022180 | 45.714 | 70 | 38 | 0 | 27 | 96 | 71 | 140 | 3.75e-14 | 66.6 |
| MS.gene09280.t1 | MTR_5g022130 | 44.928 | 69 | 38 | 0 | 28 | 96 | 72 | 140 | 4.83e-14 | 66.2 |
| MS.gene09280.t1 | MTR_8g075780 | 42.857 | 70 | 40 | 0 | 27 | 96 | 47 | 116 | 2.32e-13 | 63.9 |
| MS.gene09280.t1 | MTR_2g008520 | 39.216 | 102 | 52 | 5 | 3 | 98 | 31 | 128 | 2.74e-13 | 64.3 |
| MS.gene09280.t1 | MTR_2g008540 | 39.216 | 102 | 52 | 5 | 3 | 98 | 31 | 128 | 2.74e-13 | 64.3 |
| MS.gene09280.t1 | MTR_2g104030 | 35.644 | 101 | 54 | 2 | 6 | 98 | 41 | 138 | 3.12e-13 | 66.6 |
| MS.gene09280.t1 | MTR_7g112360 | 46.970 | 66 | 33 | 1 | 28 | 91 | 17 | 82 | 5.88e-13 | 62.0 |
| MS.gene09280.t1 | MTR_7g112360 | 46.970 | 66 | 33 | 1 | 28 | 91 | 17 | 82 | 6.96e-13 | 63.2 |
| MS.gene09280.t1 | MTR_3g061170 | 47.692 | 65 | 34 | 0 | 27 | 91 | 59 | 123 | 7.16e-13 | 63.2 |
| MS.gene09280.t1 | MTR_8g022310 | 44.118 | 68 | 34 | 1 | 28 | 91 | 11 | 78 | 2.95e-12 | 62.4 |
| MS.gene09280.t1 | MTR_8g022310 | 44.118 | 68 | 34 | 1 | 28 | 91 | 11 | 78 | 3.72e-12 | 61.6 |
| MS.gene09280.t1 | MTR_8g022310 | 44.118 | 68 | 34 | 1 | 28 | 91 | 11 | 78 | 5.27e-12 | 62.0 |
| MS.gene09280.t1 | MTR_7g109340 | 42.466 | 73 | 40 | 1 | 26 | 98 | 25 | 95 | 6.29e-12 | 62.4 |
| MS.gene09280.t1 | MTR_8g022310 | 44.118 | 68 | 34 | 1 | 28 | 91 | 11 | 78 | 6.99e-12 | 61.2 |
| MS.gene09280.t1 | MTR_2g097690 | 44.444 | 63 | 32 | 1 | 29 | 91 | 77 | 136 | 1.73e-11 | 60.1 |
| MS.gene09280.t1 | MTR_5g065160 | 42.466 | 73 | 40 | 1 | 25 | 97 | 80 | 150 | 3.21e-11 | 60.8 |
| MS.gene09280.t1 | MTR_5g065160 | 42.466 | 73 | 40 | 1 | 25 | 97 | 81 | 151 | 3.30e-11 | 60.5 |
| MS.gene09280.t1 | MTR_3g087030 | 38.889 | 72 | 41 | 1 | 21 | 92 | 76 | 144 | 3.58e-11 | 60.5 |
| MS.gene09280.t1 | MTR_2g097690 | 44.444 | 63 | 32 | 1 | 29 | 91 | 77 | 136 | 3.78e-11 | 60.1 |
| MS.gene09280.t1 | MTR_5g065160 | 42.466 | 73 | 40 | 1 | 25 | 97 | 74 | 144 | 4.08e-11 | 60.5 |
| MS.gene09280.t1 | MTR_5g065160 | 42.466 | 73 | 40 | 1 | 25 | 97 | 81 | 151 | 4.69e-11 | 60.1 |
| MS.gene09280.t1 | MTR_7g085600 | 45.455 | 66 | 33 | 1 | 29 | 94 | 56 | 118 | 4.82e-11 | 59.7 |
| MS.gene09280.t1 | MTR_3g108020 | 40.845 | 71 | 41 | 1 | 28 | 98 | 5 | 74 | 6.38e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09280.t1 | AT4G13830 | 58.228 | 158 | 60 | 3 | 2 | 157 | 40 | 193 | 3.75e-58 | 180 |
| MS.gene09280.t1 | AT4G13830 | 62.281 | 114 | 41 | 2 | 2 | 114 | 40 | 152 | 7.13e-42 | 137 |
| MS.gene09280.t1 | AT4G13830 | 61.404 | 114 | 42 | 2 | 2 | 114 | 40 | 152 | 1.76e-41 | 137 |
| MS.gene09280.t1 | AT4G36040 | 47.887 | 71 | 36 | 1 | 27 | 96 | 65 | 135 | 9.83e-15 | 67.8 |
| MS.gene09280.t1 | AT1G56300 | 46.269 | 67 | 34 | 1 | 27 | 91 | 13 | 79 | 1.19e-13 | 63.9 |
| MS.gene09280.t1 | AT1G56300 | 46.269 | 67 | 34 | 1 | 27 | 91 | 13 | 79 | 1.97e-13 | 64.3 |
| MS.gene09280.t1 | AT3G13310 | 42.647 | 68 | 34 | 1 | 27 | 94 | 64 | 126 | 2.01e-13 | 64.3 |
| MS.gene09280.t1 | AT2G17880 | 45.455 | 66 | 36 | 0 | 27 | 92 | 68 | 133 | 1.85e-12 | 62.0 |
| MS.gene09280.t1 | AT1G59980 | 46.970 | 66 | 33 | 1 | 26 | 91 | 22 | 85 | 8.28e-12 | 62.4 |
| MS.gene09280.t1 | AT1G59980 | 42.466 | 73 | 40 | 1 | 26 | 98 | 22 | 92 | 8.61e-12 | 62.4 |
| MS.gene09280.t1 | AT4G39960 | 41.892 | 74 | 40 | 1 | 28 | 101 | 86 | 156 | 1.02e-11 | 62.0 |
| MS.gene09280.t1 | AT4G39960 | 41.892 | 74 | 40 | 1 | 28 | 101 | 86 | 156 | 1.02e-11 | 62.0 |
| MS.gene09280.t1 | AT3G62600 | 39.744 | 78 | 45 | 1 | 21 | 98 | 20 | 95 | 1.28e-11 | 61.6 |
| MS.gene09280.t1 | AT3G14200 | 43.939 | 66 | 36 | 1 | 27 | 91 | 12 | 77 | 1.65e-11 | 60.5 |
| MS.gene09280.t1 | AT2G22360 | 43.077 | 65 | 34 | 1 | 28 | 92 | 87 | 148 | 2.20e-11 | 61.2 |
| MS.gene09280.t1 | AT1G80030 | 38.462 | 78 | 45 | 1 | 21 | 98 | 69 | 143 | 4.08e-11 | 60.5 |
| MS.gene09280.t1 | AT1G80030 | 38.462 | 78 | 45 | 1 | 21 | 98 | 69 | 143 | 4.08e-11 | 60.5 |
| MS.gene09280.t1 | AT1G80030 | 38.462 | 78 | 45 | 1 | 21 | 98 | 69 | 143 | 4.08e-11 | 60.5 |
| MS.gene09280.t1 | AT1G80030 | 38.462 | 78 | 45 | 1 | 21 | 98 | 69 | 143 | 4.50e-11 | 60.5 |
| MS.gene09280.t1 | AT5G25530 | 40.845 | 71 | 41 | 1 | 28 | 98 | 5 | 74 | 5.16e-11 | 60.1 |
| MS.gene09280.t1 | AT2G35720 | 33.000 | 100 | 66 | 1 | 26 | 124 | 14 | 113 | 7.58e-11 | 59.7 |
| MS.gene09280.t1 | AT4G37480 | 39.062 | 64 | 39 | 0 | 29 | 92 | 58 | 121 | 7.93e-11 | 59.7 |
| MS.gene09280.t1 | AT3G17830 | 40.789 | 76 | 42 | 1 | 29 | 104 | 65 | 137 | 8.60e-11 | 59.7 |
| MS.gene09280.t1 | AT1G59725 | 40.000 | 65 | 39 | 0 | 28 | 92 | 5 | 69 | 8.70e-11 | 59.3 |
Find 60 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGGAGCTTCTACGATCTTC+TGG | 0.253540 | 4.1:+14383082 | MS.gene09280:CDS |
| TGCTATCACTTCTTCTCTTC+AGG | 0.257402 | 4.1:-14386207 | None:intergenic |
| TCCATCAATGAACCGGATTC+TGG | 0.328084 | 4.1:-14383110 | None:intergenic |
| GTATACCAAGAGGTTTATTC+AGG | 0.341476 | 4.1:+14383205 | MS.gene09280:CDS |
| TTGAAGGTGGCTCTAAGCTT+TGG | 0.367822 | 4.1:-14383038 | None:intergenic |
| CGCCACCACGCCGTCGTTGA+AGG | 0.396835 | 4.1:-14383054 | None:intergenic |
| GGATGACCCGAATGAGATTC+GGG | 0.401935 | 4.1:-14383012 | None:intergenic |
| TGAAGGTGGCTCTAAGCTTT+GGG | 0.403440 | 4.1:-14383037 | None:intergenic |
| CCCATGACCCGAATCTCATT+CGG | 0.404157 | 4.1:+14383005 | None:intergenic |
| ACCAGAATCCGGTTCATTGA+TGG | 0.409355 | 4.1:+14383109 | MS.gene09280:CDS |
| AGGATGACCCGAATGAGATT+CGG | 0.411788 | 4.1:-14383013 | None:intergenic |
| TTTGATATCCATCAATGAAC+CGG | 0.418110 | 4.1:-14383117 | None:intergenic |
| ATGCTATAATCATTCTGATC+AGG | 0.431312 | 4.1:+14383325 | MS.gene09280:CDS |
| AAACTTTGTCTGATCCTTCA+AGG | 0.443921 | 4.1:+14383243 | MS.gene09280:CDS |
| GGATGTTTCACCACCGGATC+GGG | 0.463368 | 4.1:+14383175 | MS.gene09280:CDS |
| CCCGAATGAGATTCGGGTCA+TGG | 0.464892 | 4.1:-14383006 | None:intergenic |
| CTCGAATACGCCAGCAGAGG+GGG | 0.466457 | 4.1:+14386266 | MS.gene09280:CDS |
| TTATTAGGTGAGTGAACAAA+AGG | 0.466965 | 4.1:+14386147 | MS.gene09280:intron |
| CCATGACCCGAATCTCATTC+GGG | 0.467417 | 4.1:+14383006 | None:intergenic |
| TCATACATAATCCTCCTTGA+AGG | 0.468151 | 4.1:-14383257 | None:intergenic |
| CGGAGCTTCTACGATCTTCT+GGG | 0.475758 | 4.1:+14383083 | MS.gene09280:CDS |
| CAAGAGGTTTATTCAGGTGC+AGG | 0.475899 | 4.1:+14383211 | MS.gene09280:CDS |
| CTTCAACGACGGCGTGGTGG+CGG | 0.476011 | 4.1:+14383055 | MS.gene09280:CDS |
| TGAGTGAACAAAAGGATGAA+TGG | 0.478243 | 4.1:+14386155 | MS.gene09280:CDS |
| GATTATGTATGATAGAGATA+TGG | 0.488939 | 4.1:+14383268 | MS.gene09280:CDS |
| CGATCCGGTGGTGAAACATC+CGG | 0.500626 | 4.1:-14383173 | None:intergenic |
| GGCTCGAATACGCCAGCAGA+GGG | 0.500705 | 4.1:+14386264 | MS.gene09280:CDS |
| GTATACTCTTCCACCCGATC+CGG | 0.515930 | 4.1:-14383188 | None:intergenic |
| CAACGACGGCGTGGTGGCGG+AGG | 0.521531 | 4.1:+14383058 | MS.gene09280:CDS |
| TCGAATACGCCAGCAGAGGG+GGG | 0.524687 | 4.1:+14386267 | MS.gene09280:CDS |
| GATCCGGTGGTGAAACATCC+GGG | 0.526103 | 4.1:-14383172 | None:intergenic |
| CCGAATGAGATTCGGGTCAT+GGG | 0.531452 | 4.1:-14383005 | None:intergenic |
| AAGAAGTGATAGCAAGGTCA+TGG | 0.532505 | 4.1:+14386216 | MS.gene09280:CDS |
| CTTCTGGGCATACCAGAATC+CGG | 0.533025 | 4.1:+14383098 | MS.gene09280:CDS |
| CGAATACGCCAGCAGAGGGG+GGG | 0.536867 | 4.1:+14386268 | MS.gene09280:CDS |
| CGGATGTTTCACCACCGGAT+CGG | 0.539387 | 4.1:+14383174 | MS.gene09280:CDS |
| CTGCACCTGAATAAACCTCT+TGG | 0.549933 | 4.1:-14383210 | None:intergenic |
| CTTAGAGCCACCTTCAACGA+CGG | 0.551470 | 4.1:+14383044 | MS.gene09280:CDS |
| CGGCTCGAATACGCCAGCAG+AGG | 0.554435 | 4.1:+14386263 | MS.gene09280:CDS |
| ACGGCGTGGTGGCGGAGGAA+CGG | 0.572751 | 4.1:+14383063 | MS.gene09280:CDS |
| CACCTTCAACGACGGCGTGG+TGG | 0.573318 | 4.1:+14383052 | MS.gene09280:CDS |
| TGCTGCTGATAATACGTCAT+GGG | 0.573906 | 4.1:+14386240 | MS.gene09280:CDS |
| CACCACGCCGTCGTTGAAGG+TGG | 0.581703 | 4.1:-14383051 | None:intergenic |
| TACTCTTCCACCCGATCCGG+TGG | 0.594060 | 4.1:-14383185 | None:intergenic |
| AGGATGAATGGAAATCTCGT+TGG | 0.596088 | 4.1:+14386167 | MS.gene09280:CDS |
| GAAGAGAAGAAGTGATAGCA+AGG | 0.602140 | 4.1:+14386210 | MS.gene09280:CDS |
| GAGGTTTATTCAGGTGCAGG+AGG | 0.604858 | 4.1:+14383214 | MS.gene09280:CDS |
| TGTTTCACCACCGGATCGGG+TGG | 0.605740 | 4.1:+14383178 | MS.gene09280:CDS |
| ATGATAGAGATATGGCTAGA+GGG | 0.609573 | 4.1:+14383276 | MS.gene09280:CDS |
| CGTTGGCAATCTCAACTCGA+TGG | 0.610624 | 4.1:+14386184 | MS.gene09280:CDS |
| GCTCGAATACGCCAGCAGAG+GGG | 0.614172 | 4.1:+14386265 | MS.gene09280:CDS |
| TATGATAGAGATATGGCTAG+AGG | 0.622164 | 4.1:+14383275 | MS.gene09280:CDS |
| TCACCCGGATGTTTCACCAC+CGG | 0.635031 | 4.1:+14383169 | MS.gene09280:CDS |
| TGCTGATAATACGTCATGGG+CGG | 0.647620 | 4.1:+14386243 | MS.gene09280:CDS |
| GGTGGCTCTAAGCTTTGGGA+AGG | 0.653939 | 4.1:-14383033 | None:intergenic |
| CTTTGTCTGATCCTTCAAGG+AGG | 0.657466 | 4.1:+14383246 | MS.gene09280:CDS |
| AGCCACCTTCAACGACGGCG+TGG | 0.661105 | 4.1:+14383049 | MS.gene09280:CDS |
| ATGCTGCTGATAATACGTCA+TGG | 0.662327 | 4.1:+14386239 | MS.gene09280:CDS |
| ACTTGCAAGAAAGTATCACC+CGG | 0.704249 | 4.1:+14383154 | MS.gene09280:CDS |
| GGGTGGAAGAGTATACCAAG+AGG | 0.760271 | 4.1:+14383195 | MS.gene09280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAATATAATTGATTA+TGG | - | chr4.1:14385388-14385407 | None:intergenic | 10.0% |
| !! | GAATATATTATAAATTGTTT+CGG | - | chr4.1:14385252-14385271 | None:intergenic | 10.0% |
| !! | GTTATTAATTATTATTTGTT+AGG | + | chr4.1:14383988-14384007 | MS.gene09280:intron | 10.0% |
| !! | TTATGAAATATAAGAAAAAA+TGG | - | chr4.1:14383371-14383390 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTTTCATTGAAT+AGG | + | chr4.1:14386053-14386072 | MS.gene09280:intron | 10.0% |
| !!! | TAATCAATTATATTTTTTCT+TGG | + | chr4.1:14385388-14385407 | MS.gene09280:intron | 10.0% |
| !! | AAAATATAATTGATTATGGA+AGG | - | chr4.1:14385384-14385403 | None:intergenic | 15.0% |
| !! | AAATATAATTGATTATGGAA+GGG | - | chr4.1:14385383-14385402 | None:intergenic | 15.0% |
| !! | CTTATAATGAAATAAAAAAC+AGG | + | chr4.1:14385271-14385290 | MS.gene09280:intron | 15.0% |
| !! | GATTGTTAAGAAATTTAAAA+TGG | + | chr4.1:14385670-14385689 | MS.gene09280:intron | 15.0% |
| !!! | ATTTGATTTATACATACTAT+CGG | - | chr4.1:14383633-14383652 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTTCTTCTTATG+GGG | + | chr4.1:14383398-14383417 | MS.gene09280:intron | 15.0% |
| !!! | GACAACTTTTTAATAATAAT+TGG | + | chr4.1:14385731-14385750 | MS.gene09280:intron | 15.0% |
| !!! | GATTTTTTTTTTCTTCTTAT+GGG | + | chr4.1:14383397-14383416 | MS.gene09280:intron | 15.0% |
| !!! | TGATTTTTTTTTTCTTCTTA+TGG | + | chr4.1:14383396-14383415 | MS.gene09280:intron | 15.0% |
| !!! | TTTATGTTGATTTTTTGTTT+TGG | + | chr4.1:14383468-14383487 | MS.gene09280:intron | 15.0% |
| !! | TAAGTTATTGCTTTCTTATT+AGG | + | chr4.1:14386132-14386151 | MS.gene09280:intron | 20.0% |
| !! | TATCGTCATTATTTATTGAT+TGG | - | chr4.1:14385826-14385845 | None:intergenic | 20.0% |
| !! | TGTTAAAGAGTTAATTGATA+TGG | + | chr4.1:14383558-14383577 | MS.gene09280:intron | 20.0% |
| !! | TTACTTTGATTCTTCTTAAA+AGG | - | chr4.1:14385176-14385195 | None:intergenic | 20.0% |
| !! | TTGCTTAAAAATAGCATATA+TGG | + | chr4.1:14384319-14384338 | MS.gene09280:intron | 20.0% |
| !!! | AAATTATTTTCCTACTGATT+TGG | + | chr4.1:14384879-14384898 | MS.gene09280:intron | 20.0% |
| !!! | AGTTGTTTTAAATGTTAAGT+TGG | + | chr4.1:14385583-14385602 | MS.gene09280:intron | 20.0% |
| !!! | ATAAATTGTAAACTTTTCAG+GGG | - | chr4.1:14384567-14384586 | None:intergenic | 20.0% |
| !!! | ATCGTCATTATTTATTGATT+GGG | - | chr4.1:14385825-14385844 | None:intergenic | 20.0% |
| !!! | ATGTTAATATTAGTTTTGCT+TGG | + | chr4.1:14384349-14384368 | MS.gene09280:intron | 20.0% |
| !!! | CAGTTTTTTGTGATAAAAAA+TGG | - | chr4.1:14385122-14385141 | None:intergenic | 20.0% |
| !!! | GATAAATTGTAAACTTTTCA+GGG | - | chr4.1:14384568-14384587 | None:intergenic | 20.0% |
| !!! | GTTTATGTTTGTTATTGTTA+TGG | + | chr4.1:14383530-14383549 | MS.gene09280:intron | 20.0% |
| !!! | TAAATTTTGATTACATGACA+TGG | + | chr4.1:14384681-14384700 | MS.gene09280:intron | 20.0% |
| !!! | TGATAAATTGTAAACTTTTC+AGG | - | chr4.1:14384569-14384588 | None:intergenic | 20.0% |
| !!! | TGTTAATATTAGTTTTGCTT+GGG | + | chr4.1:14384350-14384369 | MS.gene09280:intron | 20.0% |
| !!! | TTTTTGAACTGATATATGAT+TGG | + | chr4.1:14383583-14383602 | MS.gene09280:intron | 20.0% |
| ! | AAAGCTTCTCAAACAAAAAA+AGG | - | chr4.1:14384113-14384132 | None:intergenic | 25.0% |
| ! | AACAAATTACAACCTCAAAA+AGG | - | chr4.1:14384027-14384046 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAATAGCTTA+TGG | + | chr4.1:14383797-14383816 | MS.gene09280:intron | 25.0% |
| ! | ACAAATTACAACCTCAAAAA+GGG | - | chr4.1:14384026-14384045 | None:intergenic | 25.0% |
| ! | ACAATTTATCAATCTGTTCA+GGG | + | chr4.1:14384578-14384597 | MS.gene09280:intron | 25.0% |
| ! | ACATTAATAATTGAAGAGCT+TGG | + | chr4.1:14384526-14384545 | MS.gene09280:intron | 25.0% |
| ! | ATAATATAATCCCTGAATGA+TGG | + | chr4.1:14385923-14385942 | MS.gene09280:intron | 25.0% |
| ! | GAGCAAATATATATCAAAAC+CGG | + | chr4.1:14384911-14384930 | MS.gene09280:intron | 25.0% |
| ! | GATTATGTATGATAGAGATA+TGG | + | chr4.1:14383268-14383287 | MS.gene09280:CDS | 25.0% |
| ! | TACAATTTATCAATCTGTTC+AGG | + | chr4.1:14384577-14384596 | MS.gene09280:intron | 25.0% |
| ! | TACCATGCAAAATCAATTTA+AGG | - | chr4.1:14384203-14384222 | None:intergenic | 25.0% |
| ! | TTAAAATGGTAAGTTTGTCT+TGG | + | chr4.1:14385684-14385703 | MS.gene09280:intron | 25.0% |
| ! | TTAAACTAATCACATAATCC+AGG | + | chr4.1:14385635-14385654 | MS.gene09280:intron | 25.0% |
| ! | TTGATATATATTTGCTCCTA+AGG | - | chr4.1:14384908-14384927 | None:intergenic | 25.0% |
| !! | CTCTTAGGTTCAAATATTTT+AGG | + | chr4.1:14385046-14385065 | MS.gene09280:intron | 25.0% |
| !! | TTGTCAAGTTAGATCATTTT+TGG | + | chr4.1:14383656-14383675 | MS.gene09280:intron | 25.0% |
| !!! | AGTATCGAAATATTTTAAGG+GGG | + | chr4.1:14384943-14384962 | MS.gene09280:intron | 25.0% |
| !!! | GAGTATCGAAATATTTTAAG+GGG | + | chr4.1:14384942-14384961 | MS.gene09280:intron | 25.0% |
| !!! | GGAGTATCGAAATATTTTAA+GGG | + | chr4.1:14384941-14384960 | MS.gene09280:intron | 25.0% |
| !!! | TATTTTTTTCTCCCTTTTTG+AGG | + | chr4.1:14384012-14384031 | MS.gene09280:intron | 25.0% |
| !!! | TCCTTAAATTGATTTTGCAT+GGG | + | chr4.1:14384199-14384218 | MS.gene09280:intron | 25.0% |
| !!! | TTTTTTGTTTGAGAAGCTTT+TGG | + | chr4.1:14384113-14384132 | MS.gene09280:intron | 25.0% |
| AACACAAGAATCATCTATGA+TGG | - | chr4.1:14384259-14384278 | None:intergenic | 30.0% | |
| AGCAAAATGTCTTCAAGAAA+AGG | - | chr4.1:14385433-14385452 | None:intergenic | 30.0% | |
| ATATATCAAAACCGGATTGT+AGG | + | chr4.1:14384919-14384938 | MS.gene09280:intron | 30.0% | |
| ATGATTCATTACCATCATTC+AGG | - | chr4.1:14385937-14385956 | None:intergenic | 30.0% | |
| ATGCTATAATCATTCTGATC+AGG | + | chr4.1:14383325-14383344 | MS.gene09280:CDS | 30.0% | |
| ATTTGAACCTAAGAGAAAGA+AGG | - | chr4.1:14385041-14385060 | None:intergenic | 30.0% | |
| ATTTGTTTAATCGTGACTTC+TGG | + | chr4.1:14384972-14384991 | MS.gene09280:intron | 30.0% | |
| CACACAAAAGGAAATGAATA+TGG | - | chr4.1:14385500-14385519 | None:intergenic | 30.0% | |
| GAAATAAAAAACAGGCAACT+TGG | + | chr4.1:14385279-14385298 | MS.gene09280:intron | 30.0% | |
| TACATACTATCGGTGTAAAA+AGG | - | chr4.1:14383623-14383642 | None:intergenic | 30.0% | |
| TATATCAAAACCGGATTGTA+GGG | + | chr4.1:14384920-14384939 | MS.gene09280:intron | 30.0% | |
| TGATTCATTACCATCATTCA+GGG | - | chr4.1:14385936-14385955 | None:intergenic | 30.0% | |
| TGTGGTTTCATCATCATTTA+AGG | + | chr4.1:14384704-14384723 | MS.gene09280:intron | 30.0% | |
| TTAGGATGATGAAACACTTT+AGG | + | chr4.1:14385064-14385083 | MS.gene09280:intron | 30.0% | |
| TTATTAGGTGAGTGAACAAA+AGG | + | chr4.1:14386147-14386166 | MS.gene09280:intron | 30.0% | |
| TTATTGTGCAACTTCTTTGT+TGG | + | chr4.1:14384072-14384091 | MS.gene09280:intron | 30.0% | |
| TTGCTTGTATGAGTATGTTA+CGG | + | chr4.1:14385448-14385467 | MS.gene09280:intron | 30.0% | |
| TTTCATTGAATAGGACCTTT+GGG | + | chr4.1:14386062-14386081 | MS.gene09280:intron | 30.0% | |
| TTTGATATCCATCAATGAAC+CGG | - | chr4.1:14383120-14383139 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCATAAGCTATTC+TGG | + | chr4.1:14383762-14383781 | MS.gene09280:intron | 30.0% |
| ! | AGTTAGTTTGATGTAGAACT+TGG | - | chr4.1:14384391-14384410 | None:intergenic | 30.0% |
| ! | TTTTCATTGAATAGGACCTT+TGG | + | chr4.1:14386061-14386080 | MS.gene09280:intron | 30.0% |
| !! | CCTTAAATTGATTTTGCATG+GGG | + | chr4.1:14384200-14384219 | MS.gene09280:intron | 30.0% |
| !! | GTCCTTAAATTGATTTTGCA+TGG | + | chr4.1:14384198-14384217 | MS.gene09280:intron | 30.0% |
| !!! | GGGAGTATCGAAATATTTTA+AGG | + | chr4.1:14384940-14384959 | MS.gene09280:intron | 30.0% |
| !!! | TTTGTTTTGGAATTAGTGTG+TGG | + | chr4.1:14383481-14383500 | MS.gene09280:intron | 30.0% |
| AAAAACAGGCAACTTGGTTT+AGG | + | chr4.1:14385285-14385304 | MS.gene09280:intron | 35.0% | |
| AAAACAATGAAGGGTCACTT+TGG | - | chr4.1:14383906-14383925 | None:intergenic | 35.0% | |
| AAAACAGGCAACTTGGTTTA+GGG | + | chr4.1:14385286-14385305 | MS.gene09280:intron | 35.0% | |
| AAACTTTGTCTGATCCTTCA+AGG | + | chr4.1:14383243-14383262 | MS.gene09280:CDS | 35.0% | |
| AACACAAGAATCATCCATGA+TGG | - | chr4.1:14384174-14384193 | None:intergenic | 35.0% | |
| AAGCTTTCACAGAACTGAAA+TGG | + | chr4.1:14384806-14384825 | MS.gene09280:intron | 35.0% | |
| ACAATCAGAAAACAACATCC+TGG | - | chr4.1:14385656-14385675 | None:intergenic | 35.0% | |
| ACTATCTCCTTCTTTCTCTT+AGG | + | chr4.1:14385031-14385050 | MS.gene09280:intron | 35.0% | |
| ATCAAGCACCAGTAAATATC+AGG | - | chr4.1:14385000-14385019 | None:intergenic | 35.0% | |
| ATCATGCCTTCAAAAGAGAT+AGG | + | chr4.1:14385952-14385971 | MS.gene09280:intron | 35.0% | |
| ATGATAGAGATATGGCTAGA+GGG | + | chr4.1:14383276-14383295 | MS.gene09280:CDS | 35.0% | |
| ATGGTATCTCAAGCAAGTTT+AGG | + | chr4.1:14384217-14384236 | MS.gene09280:intron | 35.0% | |
| CATTTGAAGAAGACTCATCA+AGG | + | chr4.1:14384500-14384519 | MS.gene09280:intron | 35.0% | |
| CCCCATGCAAAATCAATTTA+AGG | - | chr4.1:14384288-14384307 | None:intergenic | 35.0% | |
| CGTTGACATATACACACAAA+AGG | - | chr4.1:14385512-14385531 | None:intergenic | 35.0% | |
| GAAAGAAGGAGATAGTACAA+AGG | - | chr4.1:14385027-14385046 | None:intergenic | 35.0% | |
| GTATACCAAGAGGTTTATTC+AGG | + | chr4.1:14383205-14383224 | MS.gene09280:CDS | 35.0% | |
| TATGATAGAGATATGGCTAG+AGG | + | chr4.1:14383275-14383294 | MS.gene09280:CDS | 35.0% | |
| TCATACATAATCCTCCTTGA+AGG | - | chr4.1:14383260-14383279 | None:intergenic | 35.0% | |
| TCATGCCTTCAAAAGAGATA+GGG | + | chr4.1:14385953-14385972 | MS.gene09280:intron | 35.0% | |
| TCCCAGATGAAAACAATGAA+GGG | - | chr4.1:14383915-14383934 | None:intergenic | 35.0% | |
| TGAGTGAACAAAAGGATGAA+TGG | + | chr4.1:14386155-14386174 | MS.gene09280:CDS | 35.0% | |
| TTCATTGAATAGGACCTTTG+GGG | + | chr4.1:14386063-14386082 | MS.gene09280:intron | 35.0% | |
| TTTGATTACATGACATGGTG+TGG | + | chr4.1:14384686-14384705 | MS.gene09280:intron | 35.0% | |
| ! | AATGTCCCTATCTCTTTTGA+AGG | - | chr4.1:14385961-14385980 | None:intergenic | 35.0% |
| ! | ACCCTTCATTGTTTTCATCT+GGG | + | chr4.1:14383911-14383930 | MS.gene09280:intron | 35.0% |
| ! | ATGCTCTTTTTACACCATCA+TGG | + | chr4.1:14384157-14384176 | MS.gene09280:intron | 35.0% |
| ! | TCTCATGTTTTGTCAGTGTA+TGG | + | chr4.1:14384046-14384065 | MS.gene09280:intron | 35.0% |
| ! | TTCATTGTTTTCATCTGGGA+GGG | + | chr4.1:14383915-14383934 | MS.gene09280:intron | 35.0% |
| ! | TTTGTCAAGGTTCTGATTTG+TGG | + | chr4.1:14383942-14383961 | MS.gene09280:intron | 35.0% |
| !! | AGTAACTTGTTCAGTGTTTG+TGG | - | chr4.1:14385552-14385571 | None:intergenic | 35.0% |
| !! | AGTACATTTTAAGTGTGCTG+TGG | + | chr4.1:14385220-14385239 | MS.gene09280:intron | 35.0% |
| !! | GTGTAACTGACTTACGTTTT+GGG | + | chr4.1:14385308-14385327 | MS.gene09280:intron | 35.0% |
| !! | TTATTTTGCAGTGGAAAACC+CGG | - | chr4.1:14384622-14384641 | None:intergenic | 35.0% |
| !! | TTCTGGTTCCTGATATTTAC+TGG | + | chr4.1:14384989-14385008 | MS.gene09280:intron | 35.0% |
| !!! | CAGATTAGCTTATTTTGCAG+TGG | - | chr4.1:14384631-14384650 | None:intergenic | 35.0% |
| AAGAAGTGATAGCAAGGTCA+TGG | + | chr4.1:14386216-14386235 | MS.gene09280:CDS | 40.0% | |
| AGGATGAATGGAAATCTCGT+TGG | + | chr4.1:14386167-14386186 | MS.gene09280:CDS | 40.0% | |
| ATGCTGCTGATAATACGTCA+TGG | + | chr4.1:14386239-14386258 | MS.gene09280:CDS | 40.0% | |
| ATTGAATTGCGACCACAATG+TGG | - | chr4.1:14384749-14384768 | None:intergenic | 40.0% | |
| CCTAAGGTAACCAAATCAGT+AGG | - | chr4.1:14384892-14384911 | None:intergenic | 40.0% | |
| CTCCCAGATGAAAACAATGA+AGG | - | chr4.1:14383916-14383935 | None:intergenic | 40.0% | |
| GAAGAGAAGAAGTGATAGCA+AGG | + | chr4.1:14386210-14386229 | MS.gene09280:CDS | 40.0% | |
| GTAGAGCTTATGACTGAAAC+CGG | + | chr4.1:14384600-14384619 | MS.gene09280:intron | 40.0% | |
| TAGAGCTTATGACTGAAACC+GGG | + | chr4.1:14384601-14384620 | MS.gene09280:intron | 40.0% | |
| TCATTGAATAGGACCTTTGG+GGG | + | chr4.1:14386064-14386083 | MS.gene09280:intron | 40.0% | |
| TGCTATCACTTCTTCTCTTC+AGG | - | chr4.1:14386210-14386229 | None:intergenic | 40.0% | |
| TGCTGCTGATAATACGTCAT+GGG | + | chr4.1:14386240-14386259 | MS.gene09280:CDS | 40.0% | |
| TTAAGGCTTCCTCCTTATCT+TGG | + | chr4.1:14384721-14384740 | MS.gene09280:intron | 40.0% | |
| TTTCGATACTCCCTACAATC+CGG | - | chr4.1:14384933-14384952 | None:intergenic | 40.0% | |
| ! | AACTTGTTCAGTGTTTGTGG+TGG | - | chr4.1:14385549-14385568 | None:intergenic | 40.0% |
| ! | CTTCATTGTTTTCATCTGGG+AGG | + | chr4.1:14383914-14383933 | MS.gene09280:intron | 40.0% |
| ! | GACCCTTCATTGTTTTCATC+TGG | + | chr4.1:14383910-14383929 | MS.gene09280:intron | 40.0% |
| !! | ACTTGCAAGAAAGTATCACC+CGG | + | chr4.1:14383154-14383173 | MS.gene09280:CDS | 40.0% |
| !! | CCTACTGATTTGGTTACCTT+AGG | + | chr4.1:14384889-14384908 | MS.gene09280:intron | 40.0% |
| !! | GGTGTAACTGACTTACGTTT+TGG | + | chr4.1:14385307-14385326 | MS.gene09280:intron | 40.0% |
| AATGTGGAGCCAAGATAAGG+AGG | - | chr4.1:14384733-14384752 | None:intergenic | 45.0% | |
| ACCAGAATCCGGTTCATTGA+TGG | + | chr4.1:14383109-14383128 | MS.gene09280:CDS | 45.0% | |
| AGGATGACCCGAATGAGATT+CGG | - | chr4.1:14383016-14383035 | None:intergenic | 45.0% | |
| CAAGAGGTTTATTCAGGTGC+AGG | + | chr4.1:14383211-14383230 | MS.gene09280:CDS | 45.0% | |
| CACAATGTGGAGCCAAGATA+AGG | - | chr4.1:14384736-14384755 | None:intergenic | 45.0% | |
| CATTGAATAGGACCTTTGGG+GGG | + | chr4.1:14386065-14386084 | MS.gene09280:intron | 45.0% | |
| CTGCACCTGAATAAACCTCT+TGG | - | chr4.1:14383213-14383232 | None:intergenic | 45.0% | |
| CTTATCTTGGCTCCACATTG+TGG | + | chr4.1:14384734-14384753 | MS.gene09280:intron | 45.0% | |
| CTTTGTCTGATCCTTCAAGG+AGG | + | chr4.1:14383246-14383265 | MS.gene09280:CDS | 45.0% | |
| TCCATCAATGAACCGGATTC+TGG | - | chr4.1:14383113-14383132 | None:intergenic | 45.0% | |
| TGCTGATAATACGTCATGGG+CGG | + | chr4.1:14386243-14386262 | MS.gene09280:CDS | 45.0% | |
| !! | TGAAGGTGGCTCTAAGCTTT+GGG | - | chr4.1:14383040-14383059 | None:intergenic | 45.0% |
| !! | TTGAAGGTGGCTCTAAGCTT+TGG | - | chr4.1:14383041-14383060 | None:intergenic | 45.0% |
| !!! | TTAATAAATTTTCATAATTT+TGG | - | chr4.1:14384774-14384793 | None:intergenic | 5.0% |
| ACGGAGCTTCTACGATCTTC+TGG | + | chr4.1:14383082-14383101 | MS.gene09280:CDS | 50.0% | |
| CGGAGCTTCTACGATCTTCT+GGG | + | chr4.1:14383083-14383102 | MS.gene09280:CDS | 50.0% | |
| CGTTGGCAATCTCAACTCGA+TGG | + | chr4.1:14386184-14386203 | MS.gene09280:CDS | 50.0% | |
| CTTAGAGCCACCTTCAACGA+CGG | + | chr4.1:14383044-14383063 | MS.gene09280:CDS | 50.0% | |
| CTTCTGGGCATACCAGAATC+CGG | + | chr4.1:14383098-14383117 | MS.gene09280:CDS | 50.0% | |
| GAGGTTTATTCAGGTGCAGG+AGG | + | chr4.1:14383214-14383233 | MS.gene09280:CDS | 50.0% | |
| GGATGACCCGAATGAGATTC+GGG | - | chr4.1:14383015-14383034 | None:intergenic | 50.0% | |
| GTATACTCTTCCACCCGATC+CGG | - | chr4.1:14383191-14383210 | None:intergenic | 50.0% | |
| ! | AATAGGACCTTTGGGGGGAT+TGG | + | chr4.1:14386070-14386089 | MS.gene09280:intron | 50.0% |
| ! | AGTGTTTGTGGTGGTGAGCT+GGG | - | chr4.1:14385540-14385559 | None:intergenic | 50.0% |
| ! | GGGTGGAAGAGTATACCAAG+AGG | + | chr4.1:14383195-14383214 | MS.gene09280:CDS | 50.0% |
| !! | CTGGGAGGGTTGATTTGTCA+AGG | + | chr4.1:14383929-14383948 | MS.gene09280:intron | 50.0% |
| CGATCCGGTGGTGAAACATC+CGG | - | chr4.1:14383176-14383195 | None:intergenic | 55.0% | |
| CGGATGTTTCACCACCGGAT+CGG | + | chr4.1:14383174-14383193 | MS.gene09280:CDS | 55.0% | |
| CTTCTAGCCAATCCCCCCAA+AGG | - | chr4.1:14386080-14386099 | None:intergenic | 55.0% | |
| GATCCGGTGGTGAAACATCC+GGG | - | chr4.1:14383175-14383194 | None:intergenic | 55.0% | |
| GGATGTTTCACCACCGGATC+GGG | + | chr4.1:14383175-14383194 | MS.gene09280:CDS | 55.0% | |
| TCACCCGGATGTTTCACCAC+CGG | + | chr4.1:14383169-14383188 | MS.gene09280:CDS | 55.0% | |
| ! | CAGTGTTTGTGGTGGTGAGC+TGG | - | chr4.1:14385541-14385560 | None:intergenic | 55.0% |
| !! | GGTGGCTCTAAGCTTTGGGA+AGG | - | chr4.1:14383036-14383055 | None:intergenic | 55.0% |
| CTCGAATACGCCAGCAGAGG+GGG | + | chr4.1:14386266-14386285 | MS.gene09280:CDS | 60.0% | |
| GCTCGAATACGCCAGCAGAG+GGG | + | chr4.1:14386265-14386284 | MS.gene09280:CDS | 60.0% | |
| GGCTCGAATACGCCAGCAGA+GGG | + | chr4.1:14386264-14386283 | MS.gene09280:CDS | 60.0% | |
| TACTCTTCCACCCGATCCGG+TGG | - | chr4.1:14383188-14383207 | None:intergenic | 60.0% | |
| TCGAATACGCCAGCAGAGGG+GGG | + | chr4.1:14386267-14386286 | MS.gene09280:CDS | 60.0% | |
| TGTTTCACCACCGGATCGGG+TGG | + | chr4.1:14383178-14383197 | MS.gene09280:CDS | 60.0% | |
| AGCCACCTTCAACGACGGCG+TGG | + | chr4.1:14383049-14383068 | MS.gene09280:CDS | 65.0% | |
| CACCACGCCGTCGTTGAAGG+TGG | - | chr4.1:14383054-14383073 | None:intergenic | 65.0% | |
| CACCTTCAACGACGGCGTGG+TGG | + | chr4.1:14383052-14383071 | MS.gene09280:CDS | 65.0% | |
| CGAATACGCCAGCAGAGGGG+GGG | + | chr4.1:14386268-14386287 | MS.gene09280:CDS | 65.0% | |
| CGGCTCGAATACGCCAGCAG+AGG | + | chr4.1:14386263-14386282 | MS.gene09280:CDS | 65.0% | |
| CTTCAACGACGGCGTGGTGG+CGG | + | chr4.1:14383055-14383074 | MS.gene09280:CDS | 65.0% | |
| CGCCACCACGCCGTCGTTGA+AGG | - | chr4.1:14383057-14383076 | None:intergenic | 70.0% | |
| !! | ACGGCGTGGTGGCGGAGGAA+CGG | + | chr4.1:14383063-14383082 | MS.gene09280:CDS | 70.0% |
| !! | CAACGACGGCGTGGTGGCGG+AGG | + | chr4.1:14383058-14383077 | MS.gene09280:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 14383008 | 14386297 | 14383008 | ID=MS.gene09280 |
| chr4.1 | mRNA | 14383008 | 14386297 | 14383008 | ID=MS.gene09280.t1;Parent=MS.gene09280 |
| chr4.1 | exon | 14383008 | 14383346 | 14383008 | ID=MS.gene09280.t1.exon1;Parent=MS.gene09280.t1 |
| chr4.1 | CDS | 14383008 | 14383346 | 14383008 | ID=cds.MS.gene09280.t1;Parent=MS.gene09280.t1 |
| chr4.1 | exon | 14386154 | 14386297 | 14386154 | ID=MS.gene09280.t1.exon2;Parent=MS.gene09280.t1 |
| chr4.1 | CDS | 14386154 | 14386297 | 14386154 | ID=cds.MS.gene09280.t1;Parent=MS.gene09280.t1 |
| Gene Sequence |
| Protein sequence |
