AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09621


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09621.t1 MTR_5g015070 94.103 390 20 3 1 390 1 387 0.0 733
MS.gene09621.t1 MTR_4g097520 49.787 470 131 18 1 390 1 445 8.11e-116 351
MS.gene09621.t1 MTR_3g103460 46.845 412 152 12 35 390 45 445 1.44e-100 312
MS.gene09621.t1 MTR_1g017400 50.700 357 112 13 67 390 122 447 4.00e-94 295
MS.gene09621.t1 MTR_4g127930 84.028 144 22 1 247 390 155 297 5.40e-87 273
MS.gene09621.t1 MTR_2g098180 84.722 144 21 1 247 390 163 305 1.14e-85 270
MS.gene09621.t1 MTR_4g065370 68.783 189 46 3 202 390 126 301 1.92e-85 270
MS.gene09621.t1 MTR_7g080460 67.337 199 44 3 199 390 213 397 7.00e-84 270
MS.gene09621.t1 MTR_8g020510 85.417 144 17 2 247 390 244 383 3.02e-83 265
MS.gene09621.t1 MTR_8g020510 37.234 94 50 2 231 324 328 412 6.67e-11 64.3
MS.gene09621.t1 MTR_5g031880 80.986 142 23 2 247 388 220 357 1.91e-78 251
MS.gene09621.t1 MTR_8g068510 74.000 150 35 2 241 390 121 266 4.04e-74 236
MS.gene09621.t1 MTR_4g130270 71.631 141 39 1 250 390 46 185 7.55e-67 216
MS.gene09621.t1 MTR_8g044070 63.636 154 50 3 239 390 41 190 1.57e-59 199
MS.gene09621.t1 MTR_8g044070 36.522 115 59 2 215 329 124 224 1.19e-12 69.3
MS.gene09621.t1 MTR_7g009410 65.957 141 44 2 250 390 64 200 5.74e-58 194
MS.gene09621.t1 MTR_7g009410 37.255 102 55 2 228 329 142 234 9.93e-12 66.2
MS.gene09621.t1 MTR_6g011490 55.367 177 75 2 214 390 24 196 3.72e-56 189
MS.gene09621.t1 MTR_6g011490 36.275 102 56 2 228 329 138 230 2.26e-11 65.1
MS.gene09621.t1 MTR_2g460730 67.376 141 42 2 250 390 46 182 2.29e-54 184
MS.gene09621.t1 MTR_4g007770 66.667 141 43 2 250 390 35 171 5.69e-53 179
MS.gene09621.t1 MTR_8g044040 57.386 176 65 4 221 390 20 191 1.03e-52 180
MS.gene09621.t1 MTR_8g044040 37.895 95 51 1 242 336 146 232 1.97e-11 65.5
MS.gene09621.t1 MTR_8g468920 65.248 141 45 2 250 390 68 204 5.12e-50 173
MS.gene09621.t1 MTR_7g091390 62.879 132 40 2 249 380 55 177 1.28e-41 151
MS.gene09621.t1 MTR_4g061200 52.593 135 52 3 254 388 131 253 2.05e-32 126
MS.gene09621.t1 MTR_4g094868 52.555 137 53 3 254 390 176 300 3.79e-32 127
MS.gene09621.t1 MTR_4g094868 52.555 137 53 3 254 390 176 300 3.86e-32 127
MS.gene09621.t1 MTR_5g016810 52.555 137 53 3 254 390 152 276 9.31e-32 126
MS.gene09621.t1 MTR_4g061200 52.593 135 52 3 254 388 131 253 1.21e-31 125
MS.gene09621.t1 MTR_7g100590 51.852 135 53 3 254 388 139 261 2.22e-31 124
MS.gene09621.t1 MTR_7g100590 40.000 95 48 2 234 328 211 296 6.11e-11 64.3
MS.gene09621.t1 MTR_2g093060 52.593 135 52 3 254 388 134 256 3.42e-31 124
MS.gene09621.t1 MTR_2g093060 52.593 135 52 3 254 388 134 256 3.63e-31 124
MS.gene09621.t1 MTR_4g061200 52.344 128 49 3 254 381 131 246 1.29e-29 118
MS.gene09621.t1 MTR_5g016810 49.650 143 54 4 254 390 152 282 4.59e-29 118
MS.gene09621.t1 MTR_4g061200 52.344 128 49 3 254 381 131 246 8.62e-29 117
MS.gene09621.t1 MTR_2g093060 52.344 128 49 3 254 381 134 249 2.61e-28 115
MS.gene09621.t1 MTR_7g091390 62.366 93 29 1 288 380 3 89 1.74e-24 102
MS.gene09621.t1 MTR_4g094868 53.774 106 47 1 285 390 41 144 3.45e-24 102
MS.gene09621.t1 MTR_7g061190 47.573 103 52 1 286 388 3 103 2.21e-19 84.7
MS.gene09621.t1 MTR_7g061190 40.000 95 48 2 234 328 53 138 1.02e-11 63.2
MS.gene09621.t1 MTR_1g049140 47.321 112 48 3 251 362 134 234 4.86e-18 83.6
MS.gene09621.t1 MTR_1g049140 47.321 112 48 3 251 362 134 234 1.30e-17 84.0
MS.gene09621.t1 MTR_1g049140 47.321 112 48 3 251 362 134 234 2.22e-17 82.8
MS.gene09621.t1 MTR_3g090510 47.423 97 49 1 292 388 163 257 8.55e-15 75.9
MS.gene09621.t1 MTR_7g060560 45.361 97 50 2 292 388 156 249 6.37e-13 70.1
MS.gene09621.t1 MTR_1g090290 40.964 83 39 3 240 322 100 172 5.04e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09621.t1 AT4G37750 46.701 394 111 13 55 390 66 418 1.79e-91 286
MS.gene09621.t1 AT1G51190 68.878 196 50 3 195 390 141 325 6.24e-88 277
MS.gene09621.t1 AT5G57390 83.333 150 23 2 241 390 73 220 1.76e-87 272
MS.gene09621.t1 AT5G57390 83.333 150 23 2 241 390 191 338 1.88e-86 273
MS.gene09621.t1 AT1G72570 65.979 194 59 2 203 390 166 358 1.52e-85 266
MS.gene09621.t1 AT3G20840 84.722 144 21 1 247 390 174 316 2.24e-85 270
MS.gene09621.t1 AT5G17430 84.828 145 21 1 246 390 140 283 6.07e-84 265
MS.gene09621.t1 AT5G17430 84.828 145 21 1 246 390 202 345 1.23e-83 266
MS.gene09621.t1 AT5G65510 74.214 159 40 1 230 388 149 306 1.93e-83 257
MS.gene09621.t1 AT5G65510 74.214 159 40 1 230 388 149 306 1.59e-81 256
MS.gene09621.t1 AT5G65510 74.214 159 40 1 230 388 207 364 2.48e-81 258
MS.gene09621.t1 AT5G65510 74.214 159 40 1 230 388 207 364 2.48e-81 258
MS.gene09621.t1 AT5G10510 81.690 142 25 1 247 388 223 363 2.67e-80 256
MS.gene09621.t1 AT5G10510 81.690 142 25 1 247 388 223 363 2.67e-80 256
MS.gene09621.t1 AT5G10510 81.690 142 25 1 247 388 246 386 4.95e-80 256
MS.gene09621.t1 AT5G10510 81.690 142 25 1 247 388 261 401 6.20e-80 256
MS.gene09621.t1 AT5G10510 81.690 142 25 1 247 388 261 401 6.20e-80 256
MS.gene09621.t1 AT5G10510 79.577 142 25 2 247 388 223 360 9.57e-76 244
MS.gene09621.t1 AT5G10510 69.753 162 28 2 247 388 261 421 1.13e-72 238
MS.gene09621.t1 AT3G54320 69.504 141 42 1 250 390 61 200 1.15e-62 207
MS.gene09621.t1 AT3G54320 69.504 141 42 1 250 390 61 200 1.50e-62 207
MS.gene09621.t1 AT1G79700 66.667 141 46 1 250 390 48 187 2.99e-55 184
MS.gene09621.t1 AT1G16060 65.957 141 47 1 250 390 54 193 2.77e-53 180
MS.gene09621.t1 AT1G79700 66.406 128 42 1 250 377 48 174 4.72e-49 168
MS.gene09621.t1 AT2G41710 63.910 133 42 1 247 379 63 189 3.04e-45 161
MS.gene09621.t1 AT2G41710 63.910 133 42 1 247 379 63 189 4.99e-45 161
MS.gene09621.t1 AT2G41710 61.594 138 42 2 247 379 63 194 9.30e-43 155
MS.gene09621.t1 AT3G54320 69.903 103 30 1 288 390 33 134 1.09e-42 153
MS.gene09621.t1 AT3G54320 69.903 103 30 1 288 390 33 134 1.09e-42 153
MS.gene09621.t1 AT2G41710 62.295 122 40 1 258 379 109 224 1.13e-38 144
MS.gene09621.t1 AT1G79700 66.019 103 34 1 288 390 10 111 2.94e-34 127
MS.gene09621.t1 AT1G16060 62.385 109 40 1 282 390 16 123 1.05e-32 124
MS.gene09621.t1 AT1G79700 64.356 101 35 1 290 390 6 105 2.38e-32 122
MS.gene09621.t1 AT2G28550 51.111 135 54 3 254 388 153 275 4.30e-32 124
MS.gene09621.t1 AT4G36920 51.825 137 54 3 254 390 131 255 1.63e-31 124
MS.gene09621.t1 AT4G36920 51.825 137 54 3 254 390 131 255 1.63e-31 124
MS.gene09621.t1 AT2G28550 51.111 135 54 3 254 388 153 275 1.11e-30 122
MS.gene09621.t1 AT2G28550 38.947 95 49 2 234 328 225 310 9.96e-11 63.5
MS.gene09621.t1 AT5G67180 50.365 137 56 3 254 390 96 220 3.06e-30 118
MS.gene09621.t1 AT5G67180 50.365 137 56 3 254 390 96 220 3.79e-30 117
MS.gene09621.t1 AT5G67180 50.365 137 56 3 254 390 96 220 5.44e-30 116
MS.gene09621.t1 AT5G67180 50.365 137 56 3 254 390 96 220 9.45e-30 118
MS.gene09621.t1 AT2G28550 50.781 128 51 3 254 381 153 268 1.98e-29 115
MS.gene09621.t1 AT2G28550 50.781 128 51 3 254 381 153 268 1.98e-29 115
MS.gene09621.t1 AT2G28550 50.781 128 51 3 254 381 153 268 7.77e-28 114
MS.gene09621.t1 AT2G39250 39.865 148 78 3 228 374 81 218 6.11e-27 107
MS.gene09621.t1 AT2G39250 40.136 147 77 3 228 373 81 217 2.39e-26 108
MS.gene09621.t1 AT5G60120 46.923 130 57 3 251 380 157 274 2.04e-22 98.6
MS.gene09621.t1 AT5G60120 46.923 130 57 3 251 380 157 274 2.04e-22 98.6
MS.gene09621.t1 AT5G60120 46.923 130 57 3 251 380 157 274 2.04e-22 98.6
MS.gene09621.t1 AT5G60120 46.923 130 57 3 251 380 157 274 2.58e-22 98.6
MS.gene09621.t1 AT5G60120 46.923 130 57 3 251 380 157 274 2.81e-22 98.6
MS.gene09621.t1 AT5G60120 46.923 130 57 3 251 380 157 274 3.17e-22 98.6
MS.gene09621.t1 AT3G54990 48.598 107 45 2 254 360 122 218 8.47e-22 94.0
MS.gene09621.t1 AT3G54990 48.148 108 46 2 254 361 122 219 5.34e-21 93.6
MS.gene09621.t1 AT3G54320 68.333 60 18 1 331 390 1 59 2.30e-19 87.8
MS.gene09621.t1 AT1G16060 65.000 60 20 1 331 390 1 59 5.67e-19 85.1
MS.gene09621.t1 AT1G16060 65.000 60 20 1 331 390 1 59 5.67e-19 85.1
MS.gene09621.t1 AT1G16060 65.000 60 20 1 331 390 1 59 5.67e-19 85.1
MS.gene09621.t1 AT1G16060 65.000 60 20 1 331 390 1 59 5.67e-19 85.1
MS.gene09621.t1 AT2G28550 47.872 94 47 1 288 381 11 102 3.81e-17 81.3

Find 81 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTCTTGTACATGATTT+AGG 0.152119 5.2:+7044478 None:intergenic
ATTTCATCCTCAACTATATT+TGG 0.179003 5.2:+7044330 None:intergenic
GCTTACTTGCATTTCTTCTT+TGG 0.217497 5.2:+7044557 None:intergenic
CATAACTATGGATATTACTA+TGG 0.312407 5.2:-7044779 MS.gene09621:CDS
GTAGATATGAAGCTCATCTA+TGG 0.319596 5.2:-7043792 MS.gene09621:CDS
GCAATGGGAATCTCTCATTA+TGG 0.348044 5.2:-7044588 MS.gene09621:CDS
GGAAATAAAGATCTCTATCT+TGG 0.352592 5.2:-7042898 MS.gene09621:CDS
CCTACACCTCTTCATAACTA+TGG 0.352711 5.2:-7044791 MS.gene09621:CDS
AACATGAGAGTTGTTGCTTC+TGG 0.354947 5.2:+7044427 None:intergenic
CAAGAGAATACGAGCCTGTT+GGG 0.358991 5.2:-7044465 MS.gene09621:CDS
TATGGCTGCACTCAAGTATT+GGG 0.360270 5.2:-7043400 MS.gene09621:CDS
TTTAGGTTATTCAAATTGTT+TGG 0.361139 5.2:+7044495 None:intergenic
TTCTCTTCACAAATGAATAT+AGG 0.368739 5.2:-7044866 MS.gene09621:CDS
ATGTTCTTTGCCCAAAGGTT+TGG 0.385434 5.2:+7044103 None:intergenic
CTTGCCACCTTCCATGTTGA+TGG 0.386912 5.2:+7042941 None:intergenic
AATGATTCCTCAGTTTATCT+AGG 0.395063 5.2:-7043561 MS.gene09621:intron
AAGAATCAGAACCAAACCTT+TGG 0.415358 5.2:-7044114 MS.gene09621:CDS
GGAAGGTGGCAAGCTCGAAT+AGG 0.415431 5.2:-7042931 MS.gene09621:CDS
GCTCGAATAGGGAGAGTTGC+TGG 0.417556 5.2:-7042919 MS.gene09621:CDS
TTGGCTCATGGTATGAAGTT+TGG 0.418171 5.2:+7044514 None:intergenic
AGCTGCAAGAGCTTATGATA+TGG 0.426373 5.2:-7043418 MS.gene09621:CDS
GAAGGTGGCAAGCTCGAATA+GGG 0.444273 5.2:-7042930 MS.gene09621:CDS
GCTCCGCAAGACTCCCCAAC+AGG 0.449171 5.2:+7044451 None:intergenic
AGTCTTGAAGATGAAGTTCA+TGG 0.451972 5.2:-7044948 None:intergenic
ATCTAAGGAGATGGGTATCA+AGG 0.454082 5.2:-7044302 MS.gene09621:CDS
CACATTATCGTTTCTTAAGA+CGG 0.469666 5.2:+7044401 None:intergenic
ATATGGCTGCACTCAAGTAT+TGG 0.471306 5.2:-7043401 MS.gene09621:CDS
AACAGCTTCAGCAGCAGTAG+TGG 0.475357 5.2:+7044835 None:intergenic
CCTTGTTACTCCTCTATACA+TGG 0.477522 5.2:+7043061 None:intergenic
AGAATCAGAACCAAACCTTT+GGG 0.481711 5.2:-7044113 MS.gene09621:CDS
TATTCAAATTGTTTGGCTCA+TGG 0.483216 5.2:+7044502 None:intergenic
GCTGCTGAAGCTGTTCCAAC+AGG 0.484113 5.2:-7044827 MS.gene09621:CDS
CCTCAACTATATTTGGTAGC+TGG 0.484593 5.2:+7044337 None:intergenic
ACACAGCTTGATTGTGAGCT+AGG 0.489113 5.2:+7044219 None:intergenic
AATACGTTGCTCATTTAAGA+AGG 0.490643 5.2:-7043196 MS.gene09621:intron
TCAACGGAAGCAGAATCAAT+AGG 0.498341 5.2:+7044174 None:intergenic
ATAGTTGGAAAATTATCAAA+AGG 0.505989 5.2:-7043252 MS.gene09621:intron
GATGAAAAGGAAGCATCAAA+TGG 0.506107 5.2:-7044148 MS.gene09621:CDS
AAAGAGGGCCAAGCTAGAAA+AGG 0.510100 5.2:-7043754 MS.gene09621:CDS
TTTATCAGACATAGGTGGAC+AGG 0.517511 5.2:-7043814 MS.gene09621:intron
AACGATAATGTGATCTTAGA+CGG 0.518135 5.2:-7044390 MS.gene09621:CDS
CAAAGAACATCTCAATATAG+AGG 0.525445 5.2:-7044090 MS.gene09621:CDS
CTTCCGTTGATACGATGAAA+AGG 0.528267 5.2:-7044161 MS.gene09621:CDS
TGGAAAATTTATACGAGTGG+AGG 0.535662 5.2:+7043374 None:intergenic
GCCTTGCCCATCATGCATGA+TGG 0.542542 5.2:-7044725 MS.gene09621:CDS
AGAGGGGCTTCCATGTATAG+AGG 0.543527 5.2:-7043071 MS.gene09621:CDS
TACTGGAAAATTTATACGAG+TGG 0.545226 5.2:+7043371 None:intergenic
TTGAGATGTTCTTTGCCCAA+AGG 0.546617 5.2:+7044098 None:intergenic
TGTAAAATCAGGAAAAGTAG+TGG 0.560031 5.2:-7043101 MS.gene09621:intron
TTGTGATCCATCATGCATGA+TGG 0.561120 5.2:+7044718 None:intergenic
TAGATATGAAGCTCATCTAT+GGG 0.566225 5.2:-7043791 MS.gene09621:CDS
GGTTGATAATAAAAGCCTGT+TGG 0.572958 5.2:+7044812 None:intergenic
GGAAAATTTATACGAGTGGA+GGG 0.573107 5.2:+7043375 None:intergenic
CCATAGTTATGAAGAGGTGT+AGG 0.575108 5.2:+7044791 None:intergenic
GCTTCAGCAGCAGTAGTGGA+AGG 0.581457 5.2:+7044839 None:intergenic
GAAGTTCATGGAAAATATTG+AGG 0.582271 5.2:-7044936 MS.gene09621:CDS
ACGATAATGTGATCTTAGAC+GGG 0.584490 5.2:-7044389 MS.gene09621:CDS
AAAGTAGTGGATTCTCAAGA+GGG 0.589213 5.2:-7043088 MS.gene09621:CDS
ACAAGAGAATACGAGCCTGT+TGG 0.589238 5.2:-7044466 MS.gene09621:CDS
TGTGATCCATCATGCATGAT+GGG 0.592730 5.2:+7044719 None:intergenic
GAGCCTGTTGGGGAGTCTTG+CGG 0.593013 5.2:-7044454 MS.gene09621:CDS
GGTTATGAAAGTGAACATGT+TGG 0.604732 5.2:-7044758 MS.gene09621:CDS
TAATATCCATAGTTATGAAG+AGG 0.606260 5.2:+7044785 None:intergenic
TCTAAGGAGATGGGTATCAA+GGG 0.607562 5.2:-7044301 MS.gene09621:CDS
CAAGCTAGAAAAGGAAAGCA+AGG 0.608427 5.2:-7043745 MS.gene09621:intron
CTCAATATAGAGGTGTAACA+AGG 0.612520 5.2:-7044080 MS.gene09621:intron
AAATTATCAAAAGGAACTTG+AGG 0.613334 5.2:-7043243 MS.gene09621:CDS
AAAAGTAGTGGATTCTCAAG+AGG 0.615091 5.2:-7043089 MS.gene09621:CDS
AAGAGAATACGAGCCTGTTG+GGG 0.620765 5.2:-7044464 MS.gene09621:CDS
CCAGCTACCAAATATAGTTG+AGG 0.626449 5.2:-7044337 MS.gene09621:CDS
GTGTATTTGACACTTGTGCA+TGG 0.627663 5.2:+7044259 None:intergenic
TCCATCATGCATGATGGGCA+AGG 0.639163 5.2:+7044724 None:intergenic
GCAGACACCATCAACATGGA+AGG 0.640576 5.2:-7042948 MS.gene09621:CDS
CCATGTATAGAGGAGTAACA+AGG 0.642280 5.2:-7043061 MS.gene09621:intron
GACACCATCAACATGGAAGG+TGG 0.644993 5.2:-7042945 MS.gene09621:CDS
GTTGGTTTATCAGACATAGG+TGG 0.647177 5.2:-7043819 MS.gene09621:intron
CATGATGGATCACAAGCACA+AGG 0.647359 5.2:-7044710 MS.gene09621:intron
ATGGCTGCACTCAAGTATTG+GGG 0.648728 5.2:-7043399 MS.gene09621:CDS
TGTAGCAGACACCATCAACA+TGG 0.652346 5.2:-7042952 MS.gene09621:intron
TGATTGTGAGCTAGGACTCG+CGG 0.676952 5.2:+7044227 None:intergenic
AAGTAGTGGATTCTCAAGAG+GGG 0.719782 5.2:-7043087 MS.gene09621:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGAATATAACAAATAT+TGG + chr5.2:7042496-7042515 None:intergenic 10.0%
!!! TTTTAACTAATAAAATACAA+TGG - chr5.2:7044613-7044632 MS.gene09621:intron 10.0%
!! ATATCATTTCTCAAATATAT+TGG + chr5.2:7044354-7044373 None:intergenic 15.0%
!!! AATCAAAATAGTAACATTTT+TGG - chr5.2:7042273-7042292 MS.gene09621:intron 15.0%
!!! CAAATTTTTTCACAATATAA+AGG + chr5.2:7043213-7043232 None:intergenic 15.0%
!!! CTATATATGATTTTAAATTG+CGG - chr5.2:7043169-7043188 MS.gene09621:intron 15.0%
!!! GATTTTACAAAGTTAAATTA+TGG + chr5.2:7044057-7044076 None:intergenic 15.0%
!!! TAAGTTTTTTTTGTACAAAT+GGG + chr5.2:7044686-7044705 None:intergenic 15.0%
!!! TAATTTAACTTTGTAAAATC+AGG - chr5.2:7044057-7044076 MS.gene09621:intron 15.0%
!!! TATTTGAGAAATGATATTTT+TGG - chr5.2:7044357-7044376 MS.gene09621:CDS 15.0%
!!! TTAAGTTTTTTTTGTACAAA+TGG + chr5.2:7044687-7044706 None:intergenic 15.0%
!! AAAATATACACACATAAAAG+AGG + chr5.2:7043474-7043493 None:intergenic 20.0%
!! AAATGTACATTCAATATAAG+AGG + chr5.2:7044832-7044851 None:intergenic 20.0%
!! ACAAAAACATTCTTAACATT+TGG + chr5.2:7043642-7043661 None:intergenic 20.0%
!! ATAGTTGGAAAATTATCAAA+AGG - chr5.2:7043917-7043936 MS.gene09621:intron 20.0%
!! ATCTCATGATAATATATAGT+TGG - chr5.2:7043902-7043921 MS.gene09621:intron 20.0%
!! GTTTATAAACCATTTAACAT+TGG + chr5.2:7044507-7044526 None:intergenic 20.0%
!! TATAATAATACTTAGGAAGA+GGG - chr5.2:7044864-7044883 MS.gene09621:CDS 20.0%
!! TTATAATAATACTTAGGAAG+AGG - chr5.2:7044863-7044882 MS.gene09621:CDS 20.0%
!!! ACTTTTAATAATGTGACAAA+AGG + chr5.2:7043132-7043151 None:intergenic 20.0%
!!! CTTTTATGTGTGTATATTTT+TGG - chr5.2:7043474-7043493 MS.gene09621:intron 20.0%
!!! TGGTTTTGTATATTAACATA+TGG + chr5.2:7044037-7044056 None:intergenic 20.0%
!!! TGTTACTATTTTGATTGTTT+AGG + chr5.2:7042269-7042288 None:intergenic 20.0%
!!! TTTAGGTTATTCAAATTGTT+TGG + chr5.2:7042677-7042696 None:intergenic 20.0%
! AAAATGTGTCAAATACACAA+GGG + chr5.2:7044597-7044616 None:intergenic 25.0%
! AAATTATCAAAAGGAACTTG+AGG - chr5.2:7043926-7043945 MS.gene09621:intron 25.0%
! AACTATTTATGTGTAGCAAT+GGG - chr5.2:7042566-7042585 MS.gene09621:intron 25.0%
! AATTGTAGTCTGCAATATAA+AGG + chr5.2:7043279-7043298 None:intergenic 25.0%
! ACTTGAAAAGATTAGATTGA+TGG - chr5.2:7044800-7044819 MS.gene09621:CDS 25.0%
! ATTTCATCCTCAACTATATT+TGG + chr5.2:7042842-7042861 None:intergenic 25.0%
! CATAACTATGGATATTACTA+TGG - chr5.2:7042390-7042409 MS.gene09621:intron 25.0%
! GCAAAGAATTTAATCATTAC+TGG + chr5.2:7043818-7043837 None:intergenic 25.0%
! TAAAATGTGTCAAATACACA+AGG + chr5.2:7044598-7044617 None:intergenic 25.0%
! TAACTATTTATGTGTAGCAA+TGG - chr5.2:7042565-7042584 MS.gene09621:intron 25.0%
! TAATATCCATAGTTATGAAG+AGG + chr5.2:7042387-7042406 None:intergenic 25.0%
! TATTCTCTTGTACATGATTT+AGG + chr5.2:7042694-7042713 None:intergenic 25.0%
! TTCTCTTCACAAATGAATAT+AGG - chr5.2:7042303-7042322 MS.gene09621:intron 25.0%
!! AAATTTTTGATCTAAGGAGA+TGG - chr5.2:7042858-7042877 MS.gene09621:intron 25.0%
!! AACTCCAAGAATTTTATTGT+AGG - chr5.2:7043707-7043726 MS.gene09621:intron 25.0%
!! AATTTTTGATCTAAGGAGAT+GGG - chr5.2:7042859-7042878 MS.gene09621:intron 25.0%
!! AGGATGAAATTTTTGATCTA+AGG - chr5.2:7042852-7042871 MS.gene09621:intron 25.0%
!! CTGCAATATAAAGGATTTTA+AGG + chr5.2:7043270-7043289 None:intergenic 25.0%
!!! ATTTTGATTGTTTAGGCTAA+AGG + chr5.2:7042262-7042281 None:intergenic 25.0%
AACGATAATGTGATCTTAGA+CGG - chr5.2:7042779-7042798 MS.gene09621:intron 30.0%
AATACGTTGCTCATTTAAGA+AGG - chr5.2:7043973-7043992 MS.gene09621:intron 30.0%
AATCTTACCTAGATAAACTG+AGG + chr5.2:7043618-7043637 None:intergenic 30.0%
AATGATTCCTCAGTTTATCT+AGG - chr5.2:7043608-7043627 MS.gene09621:intron 30.0%
ACCTCCTACAATAAAATTCT+TGG + chr5.2:7043714-7043733 None:intergenic 30.0%
ATACGCATTCCAATGTTAAA+TGG - chr5.2:7044495-7044514 MS.gene09621:CDS 30.0%
CAAAGAACATCTCAATATAG+AGG - chr5.2:7043079-7043098 MS.gene09621:CDS 30.0%
CACATTATCGTTTCTTAAGA+CGG + chr5.2:7042771-7042790 None:intergenic 30.0%
CCTTATGATGATAGAAAAAG+AGG - chr5.2:7043665-7043684 MS.gene09621:intron 30.0%
GAAGTTCATGGAAAATATTG+AGG - chr5.2:7042233-7042252 MS.gene09621:intron 30.0%
GATAACAGCTGTAAAAAAGA+GGG - chr5.2:7043400-7043419 MS.gene09621:CDS 30.0%
GCTTGATTTATAACGAATGT+TGG - chr5.2:7043332-7043351 MS.gene09621:intron 30.0%
GGAAATAAAGATCTCTATCT+TGG - chr5.2:7044271-7044290 MS.gene09621:CDS 30.0%
TACTGGAAAATTTATACGAG+TGG + chr5.2:7043801-7043820 None:intergenic 30.0%
TAGATATGAAGCTCATCTAT+GGG - chr5.2:7043378-7043397 MS.gene09621:CDS 30.0%
TCCTTGAATTGAAGACAAAA+TGG + chr5.2:7043840-7043859 None:intergenic 30.0%
TGTAAAATCAGGAAAAGTAG+TGG - chr5.2:7044068-7044087 MS.gene09621:intron 30.0%
! CAAAATGCACAGCTTTTATA+AGG + chr5.2:7043532-7043551 None:intergenic 30.0%
! CCTCTTTTTCTATCATCATA+AGG + chr5.2:7043668-7043687 None:intergenic 30.0%
! TATTCAAATTGTTTGGCTCA+TGG + chr5.2:7042670-7042689 None:intergenic 30.0%
! TCCAAGAATTTTATTGTAGG+AGG - chr5.2:7043710-7043729 MS.gene09621:intron 30.0%
!! AATGTTGGTTTATCAGACAT+AGG - chr5.2:7043347-7043366 MS.gene09621:intron 30.0%
!! TCTTCTAGCTGATATTTTGT+CGG + chr5.2:7042806-7042825 None:intergenic 30.0%
!!! GAGTATACTCTCACATTTTT+TGG - chr5.2:7044304-7044323 MS.gene09621:CDS 30.0%
AAGAATCAGAACCAAACCTT+TGG - chr5.2:7043055-7043074 MS.gene09621:intron 35.0%
ACGATAATGTGATCTTAGAC+GGG - chr5.2:7042780-7042799 MS.gene09621:intron 35.0%
AGAATCAGAACCAAACCTTT+GGG - chr5.2:7043056-7043075 MS.gene09621:intron 35.0%
CAAGCAACAAAAAACACGAA+AGG + chr5.2:7043317-7043336 None:intergenic 35.0%
GCTTACTTGCATTTCTTCTT+TGG + chr5.2:7042615-7042634 None:intergenic 35.0%
GGAAAATTTATACGAGTGGA+GGG + chr5.2:7043797-7043816 None:intergenic 35.0%
GGATAACAGCTGTAAAAAAG+AGG - chr5.2:7043399-7043418 MS.gene09621:CDS 35.0%
GGTTATGAAAGTGAACATGT+TGG - chr5.2:7042411-7042430 MS.gene09621:intron 35.0%
GTAGATATGAAGCTCATCTA+TGG - chr5.2:7043377-7043396 MS.gene09621:CDS 35.0%
TGGAAAATTTATACGAGTGG+AGG + chr5.2:7043798-7043817 None:intergenic 35.0%
! CTCAATATAGAGGTGTAACA+AGG - chr5.2:7043089-7043108 MS.gene09621:CDS 35.0%
! CTTCCTTTTCATCGTATCAA+CGG + chr5.2:7043014-7043033 None:intergenic 35.0%
!! AAAAGTAGTGGATTCTCAAG+AGG - chr5.2:7044080-7044099 MS.gene09621:intron 35.0%
!! AAAGTAGTGGATTCTCAAGA+GGG - chr5.2:7044081-7044100 MS.gene09621:CDS 35.0%
!! GATGAAAAGGAAGCATCAAA+TGG - chr5.2:7043021-7043040 MS.gene09621:intron 35.0%
!! GCCATTTTGTCTTCAATTCA+AGG - chr5.2:7043836-7043855 MS.gene09621:intron 35.0%
!! GGTTGATAATAAAAGCCTGT+TGG + chr5.2:7042360-7042379 None:intergenic 35.0%
AGCTGCAAGAGCTTATGATA+TGG - chr5.2:7043751-7043770 MS.gene09621:CDS 40.0%
ATATGGCTGCACTCAAGTAT+TGG - chr5.2:7043768-7043787 MS.gene09621:CDS 40.0%
ATCTAAGGAGATGGGTATCA+AGG - chr5.2:7042867-7042886 MS.gene09621:intron 40.0%
ATGTTCTTTGCCCAAAGGTT+TGG + chr5.2:7043069-7043088 None:intergenic 40.0%
CAAGCTAGAAAAGGAAAGCA+AGG - chr5.2:7043424-7043443 MS.gene09621:CDS 40.0%
CCAGCTACCAAATATAGTTG+AGG - chr5.2:7042832-7042851 MS.gene09621:intron 40.0%
CCATGTATAGAGGAGTAACA+AGG - chr5.2:7044108-7044127 MS.gene09621:CDS 40.0%
CCTACACCTCTTCATAACTA+TGG - chr5.2:7042378-7042397 MS.gene09621:intron 40.0%
CCTTGTTACTCCTCTATACA+TGG + chr5.2:7044111-7044130 None:intergenic 40.0%
CTTCCGTTGATACGATGAAA+AGG - chr5.2:7043008-7043027 MS.gene09621:intron 40.0%
GCAATGGGAATCTCTCATTA+TGG - chr5.2:7042581-7042600 MS.gene09621:intron 40.0%
GTGTATTTGACACTTGTGCA+TGG + chr5.2:7042913-7042932 None:intergenic 40.0%
TATGGCTGCACTCAAGTATT+GGG - chr5.2:7043769-7043788 MS.gene09621:CDS 40.0%
TCAACGGAAGCAGAATCAAT+AGG + chr5.2:7042998-7043017 None:intergenic 40.0%
TCTAAGGAGATGGGTATCAA+GGG - chr5.2:7042868-7042887 MS.gene09621:intron 40.0%
TGTGATCCATCATGCATGAT+GGG + chr5.2:7042453-7042472 None:intergenic 40.0%
TTGAGATGTTCTTTGCCCAA+AGG + chr5.2:7043074-7043093 None:intergenic 40.0%
TTGGCTCATGGTATGAAGTT+TGG + chr5.2:7042658-7042677 None:intergenic 40.0%
TTGTGATCCATCATGCATGA+TGG + chr5.2:7042454-7042473 None:intergenic 40.0%
TTTATCAGACATAGGTGGAC+AGG - chr5.2:7043355-7043374 MS.gene09621:intron 40.0%
! AACATGAGAGTTGTTGCTTC+TGG + chr5.2:7042745-7042764 None:intergenic 40.0%
! CCATAGTTATGAAGAGGTGT+AGG + chr5.2:7042381-7042400 None:intergenic 40.0%
! CCTCAACTATATTTGGTAGC+TGG + chr5.2:7042835-7042854 None:intergenic 40.0%
! GTTGGTTTATCAGACATAGG+TGG - chr5.2:7043350-7043369 MS.gene09621:intron 40.0%
!! AAGTAGTGGATTCTCAAGAG+GGG - chr5.2:7044082-7044101 MS.gene09621:CDS 40.0%
!!! CTTGCTTTCCTTTTCTAGCT+TGG + chr5.2:7043426-7043445 None:intergenic 40.0%
AAAGAGGGCCAAGCTAGAAA+AGG - chr5.2:7043415-7043434 MS.gene09621:CDS 45.0%
AAGAGAATACGAGCCTGTTG+GGG - chr5.2:7042705-7042724 MS.gene09621:intron 45.0%
ACAAGAGAATACGAGCCTGT+TGG - chr5.2:7042703-7042722 MS.gene09621:intron 45.0%
ACACAGCTTGATTGTGAGCT+AGG + chr5.2:7042953-7042972 None:intergenic 45.0%
ATGGATCACAAGCACAAGGT+TGG - chr5.2:7042463-7042482 MS.gene09621:intron 45.0%
CAAGAGAATACGAGCCTGTT+GGG - chr5.2:7042704-7042723 MS.gene09621:intron 45.0%
CTGAGGAATCATTGTGCATG+TGG + chr5.2:7043601-7043620 None:intergenic 45.0%
TGTAGCAGACACCATCAACA+TGG - chr5.2:7044217-7044236 MS.gene09621:CDS 45.0%
! ATGGCTGCACTCAAGTATTG+GGG - chr5.2:7043770-7043789 MS.gene09621:CDS 45.0%
!! CATGATGGATCACAAGCACA+AGG - chr5.2:7042459-7042478 MS.gene09621:intron 45.0%
!! TTATAATTATAATAATACTT+AGG - chr5.2:7044857-7044876 MS.gene09621:CDS 5.0%
!! TTATATATGAAAAATAAAAT+TGG - chr5.2:7044178-7044197 MS.gene09621:CDS 5.0%
AACAGCTTCAGCAGCAGTAG+TGG + chr5.2:7042337-7042356 None:intergenic 50.0%
AGAGGGGCTTCCATGTATAG+AGG - chr5.2:7044098-7044117 MS.gene09621:CDS 50.0%
CTTGCCACCTTCCATGTTGA+TGG + chr5.2:7044231-7044250 None:intergenic 50.0%
GAAGGTGGCAAGCTCGAATA+GGG - chr5.2:7044239-7044258 MS.gene09621:CDS 50.0%
GACACCATCAACATGGAAGG+TGG - chr5.2:7044224-7044243 MS.gene09621:CDS 50.0%
GCAGACACCATCAACATGGA+AGG - chr5.2:7044221-7044240 MS.gene09621:CDS 50.0%
TGATTGTGAGCTAGGACTCG+CGG + chr5.2:7042945-7042964 None:intergenic 50.0%
!! TCCATCATGCATGATGGGCA+AGG + chr5.2:7042448-7042467 None:intergenic 50.0%
GCCTTGCCCATCATGCATGA+TGG - chr5.2:7042444-7042463 MS.gene09621:intron 55.0%
GCTCGAATAGGGAGAGTTGC+TGG - chr5.2:7044250-7044269 MS.gene09621:CDS 55.0%
GCTGCTGAAGCTGTTCCAAC+AGG - chr5.2:7042342-7042361 MS.gene09621:intron 55.0%
GGAAGGTGGCAAGCTCGAAT+AGG - chr5.2:7044238-7044257 MS.gene09621:CDS 55.0%
! GCTTCAGCAGCAGTAGTGGA+AGG + chr5.2:7042333-7042352 None:intergenic 55.0%
GAGCCTGTTGGGGAGTCTTG+CGG - chr5.2:7042715-7042734 MS.gene09621:intron 60.0%
GCTCCGCAAGACTCCCCAAC+AGG + chr5.2:7042721-7042740 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 7042231 7044960 7042231 ID=MS.gene09621
chr5.2 mRNA 7042231 7044960 7042231 ID=MS.gene09621.t1;Parent=MS.gene09621
chr5.2 exon 7044711 7044960 7044711 ID=MS.gene09621.t1.exon1;Parent=MS.gene09621.t1
chr5.2 CDS 7044711 7044960 7044711 ID=cds.MS.gene09621.t1;Parent=MS.gene09621.t1
chr5.2 exon 7044081 7044609 7044081 ID=MS.gene09621.t1.exon2;Parent=MS.gene09621.t1
chr5.2 CDS 7044081 7044609 7044081 ID=cds.MS.gene09621.t1;Parent=MS.gene09621.t1
chr5.2 exon 7043746 7043828 7043746 ID=MS.gene09621.t1.exon3;Parent=MS.gene09621.t1
chr5.2 CDS 7043746 7043828 7043746 ID=cds.MS.gene09621.t1;Parent=MS.gene09621.t1
chr5.2 exon 7043562 7043570 7043562 ID=MS.gene09621.t1.exon4;Parent=MS.gene09621.t1
chr5.2 CDS 7043562 7043570 7043562 ID=cds.MS.gene09621.t1;Parent=MS.gene09621.t1
chr5.2 exon 7043374 7043462 7043374 ID=MS.gene09621.t1.exon5;Parent=MS.gene09621.t1
chr5.2 CDS 7043374 7043462 7043374 ID=cds.MS.gene09621.t1;Parent=MS.gene09621.t1
chr5.2 exon 7043197 7043270 7043197 ID=MS.gene09621.t1.exon6;Parent=MS.gene09621.t1
chr5.2 CDS 7043197 7043270 7043197 ID=cds.MS.gene09621.t1;Parent=MS.gene09621.t1
chr5.2 exon 7043062 7043112 7043062 ID=MS.gene09621.t1.exon7;Parent=MS.gene09621.t1
chr5.2 CDS 7043062 7043112 7043062 ID=cds.MS.gene09621.t1;Parent=MS.gene09621.t1
chr5.2 exon 7042890 7042969 7042890 ID=MS.gene09621.t1.exon8;Parent=MS.gene09621.t1
chr5.2 CDS 7042890 7042969 7042890 ID=cds.MS.gene09621.t1;Parent=MS.gene09621.t1
chr5.2 exon 7042231 7042238 7042231 ID=MS.gene09621.t1.exon9;Parent=MS.gene09621.t1
chr5.2 CDS 7042231 7042238 7042231 ID=cds.MS.gene09621.t1;Parent=MS.gene09621.t1
Gene Sequence

>MS.gene09621

ATGAAGTTCATGGAAAATATTGAGGATACCTTTAGCCTAAACAATCAAAATAGTAACATTTTTGGTTTATCTTTCTCTTCACAAATGAATATAGGTGCTCCTTCCACTACTGCTGCTGAAGCTGTTCCAACAGGCTTTTATTATCAACCTACACCTCTTCATAACTATGGATATTACTATGGTTATGAAAGTGAACATGTTGGATTGTATTCAGCCTTGCCCATCATGCATGATGGATCACAAGCACAAGGTTGGTTTAGTTCCAATATTTGTTATATTCTTTTTTCTTATTTGAAATGAAATGTACTAATAATTTAACTTTTTGAATACTTTGTAACTATTTATGTGTAGCAATGGGAATCTCTCATTATGGATGCAGTACCAAAGAAGAAATGCAAGTAAGCATAGATAGTATTTTTAACAACCAAACTTCATACCATGAGCCAAACAATTTGAATAACCTAAATCATGTACAAGAGAATACGAGCCTGTTGGGGAGTCTTGCGGAGCACCAGAAGCAACAACTCTCATGTTACACCGTCTTAAGAAACGATAATGTGATCTTAGACGGGCCGACAAAATATCAGCTAGAAGATAATGTCCAGCTACCAAATATAGTTGAGGATGAAATTTTTGATCTAAGGAGATGGGTATCAAGGGACTTTCATGCTGCTACTAGCCATGCACAAGTGTCAAATACACGTGTGTTGTCCGCGAGTCCTAGCTCACAATCAAGCTGTGTTACAAGTTCACAACAAACATCACCTATTGATTCTGCTTCCGTTGATACGATGAAAAGGAAGCATCAAATGGTGAACTTGAAAAAGAATCAGAACCAAACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGTTTGTTTTCATCTAATGCCTTTTGTCACATTATTAAAAGTGTTGTTAAGCATTAAGACTATATATGATTTTAAATTGCGGTTGAGTATATTCTATAAACCTTTATATTGTGAAAAAATTTGATCGATACAATCGAATTTGCAGTTATGACGCAGACCTTAAAATCCTTTATATTGCAGACTACAATTTAAAACTGTTCATCTCCTTTCGTGTTTTTTGTTGCTTGATTTATAACGAATGTTGGTTTATCAGACATAGGTGGACAGGTAGATATGAAGCTCATCTATGGGATAACAGCTGTAAAAAAGAGGGCCAAGCTAGAAAAGGAAAGCAAGGTAAGAATTAAAGCAACTATTATTTCCTCTTTTATGTGTGTATATTTTTGGTCAAACAAATCTTATTAGCTTGATTCTATTCTCCTTATAAAAGCTGTGCATTTTGTAGCAATATTATTTGTCTCTCACTCTTGTTTTTGTTTGTGTTTTCTCCACATGCACAATGATTCCTCAGTTTATCTAGGTAAGATTTCCAAATGTTAAGAATGTTTTTGTTTTCCTTATGATGATAGAAAAAGAGGAACATTTATGTATATAAGTAACTCCAAGAATTTTATTGTAGGAGGTTATGATATAGAAGAAAAAGCTGCAAGAGCTTATGATATGGCTGCACTCAAGTATTGGGGACCCTCCACTCGTATAAATTTTCCAGTAATGATTAAATTCTTTGCCATTTTGTCTTCAATTCAAGGATCTAATTCAGTACTGACAGTAACTAATATGTAATTAATCATGATCTCATGATAATATATAGTTGGAAAATTATCAAAAGGAACTTGAGGAAATGAAGAAAATGACTAGACTAGAATACGTTGCTCATTTAAGAAGGTACAAATATTTGCATCTCAATCATTATGCAGTTGAAAACCATATGTTAATATACAAAACCATAATTTAACTTTGTAAAATCAGGAAAAGTAGTGGATTCTCAAGAGGGGCTTCCATGTATAGAGGAGTAACAAGGTGAGTCTAACATCACATGCATTGCACTAATTTAATTTAATATATGATTTATATATGAAAAATAAAATTGGCTCTGATTATTATCTTTGTAGCAGACACCATCAACATGGAAGGTGGCAAGCTCGAATAGGGAGAGTTGCTGGAAATAAAGATCTCTATCTTGGAACTTTCAGTGAGTATACTCTCACATTTTTTGGTTATTCTTTCTTTTGTGATTGTGACCAATATATTTGAGAAATGATATTTTTGGTTATTTATTTCAGTCTTGATGAAATATTTATTTATAAAATTAGACTTGAAATAAAAAACAACAACAAGAAAATGTGTGTTAGTAATTATGTTTAATGTTATAAACAAATTTTAATATACGCATTCCAATGTTAAATGGTTTATAAACAATTTTTAACTAAGTTTGCTAAAAAAATGAGTAACAATGTAAATATTCGTATGACTTAAATAATGCACCCTTGTGTATTTGACACATTTTAACTAATAAAATACAATGGATTTCTTCTTTCAAAAAACTAAAAATAAAAAACTAAAACTTAAAGAACCCATTTGTACAAAAAAAACTTAAAAAACTAACTTGTTATAATAAACATCTAGTTTAATATTTGTATAGTTTAGAGACTAAATTATATAGTTTATAGAATAAATTAGAGAAAGTGATACTTGAAAAGATTAGATTGATGGTTTATTCCTCTTATATTGAATGTACATTTATATATTATAATTATAATAATACTTAGGAAGAGGGTGCTTTATAACTTTATAAAGCGAATCTTTGATGCATTTCTTGATCTCTTTGAACTCTTCTTTTCAGTCACATAA

Protein sequence

>MS.gene09621.t1

MKFMENIEDTFSLNNQNSNIFGLSFSSQMNIGAPSTTAAEAVPTGFYYQPTPLHNYGYYYGYESEHVGLYSALPIMHDGSQAQAMGISHYGCSTKEEMQVSIDSIFNNQTSYHEPNNLNNLNHVQENTSLLGSLAEHQKQQLSCYTVLRNDNVILDGPTKYQLEDNVQLPNIVEDEIFDLRRWVSRDFHAATSHAQVSNTRVLSASPSSQSSCVTSSQQTSPIDSASVDTMKRKHQMVNLKKNQNQTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQARKGKQVYLGGYDIEEKAARAYDMAALKYWGPSTRINFPLENYQKELEEMKKMTRLEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFIT