Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09796.t1 | XP_003625563.1 | 88.6 | 246 | 4 | 1 | 1 | 246 | 1 | 222 | 4.50E-115 | 424.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09796.t1 | Q9ZUU1 | 70.3 | 219 | 40 | 2 | 27 | 245 | 43 | 236 | 3.4e-79 | 296.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09796.t1 | G7L1P0 | 88.6 | 246 | 4 | 1 | 1 | 246 | 1 | 222 | 3.2e-115 | 424.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050169 | MS.gene09796 | 0.836753 | 7.78E-57 | -1.69E-46 |
| MS.gene052358 | MS.gene09796 | 0.838871 | 2.22E-57 | -1.69E-46 |
| MS.gene052361 | MS.gene09796 | 0.827762 | 1.31E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011389 | MS.gene09796 | PPI |
| MS.gene065461 | MS.gene09796 | PPI |
| MS.gene057156 | MS.gene09796 | PPI |
| MS.gene033347 | MS.gene09796 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09796.t1 | MTR_7g100530 | 88.618 | 246 | 4 | 1 | 1 | 246 | 1 | 222 | 4.10e-156 | 434 |
| MS.gene09796.t1 | MTR_1g067050 | 66.031 | 262 | 48 | 4 | 1 | 245 | 1 | 238 | 5.05e-111 | 321 |
| MS.gene09796.t1 | MTR_2g461290 | 30.583 | 206 | 98 | 5 | 43 | 245 | 79 | 242 | 1.12e-21 | 94.0 |
| MS.gene09796.t1 | MTR_4g103800 | 27.053 | 207 | 115 | 4 | 40 | 244 | 33 | 205 | 1.21e-17 | 79.7 |
| MS.gene09796.t1 | MTR_4g035170 | 27.317 | 205 | 106 | 4 | 43 | 245 | 94 | 257 | 3.93e-17 | 79.3 |
| MS.gene09796.t1 | MTR_4g103800 | 32.500 | 120 | 79 | 1 | 40 | 159 | 33 | 150 | 1.89e-15 | 72.8 |
| MS.gene09796.t1 | MTR_8g009520 | 33.684 | 95 | 59 | 2 | 34 | 127 | 18 | 109 | 1.95e-12 | 64.7 |
| MS.gene09796.t1 | MTR_4g035850 | 28.926 | 121 | 79 | 3 | 31 | 151 | 26 | 139 | 8.49e-12 | 63.2 |
| MS.gene09796.t1 | MTR_4g035850 | 29.897 | 97 | 65 | 1 | 31 | 127 | 49 | 142 | 1.36e-11 | 62.8 |
| MS.gene09796.t1 | MTR_5g068940 | 27.350 | 117 | 82 | 1 | 11 | 127 | 6 | 119 | 2.15e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09796.t1 | AT2G37250 | 62.977 | 262 | 54 | 5 | 1 | 245 | 1 | 236 | 1.05e-104 | 305 |
| MS.gene09796.t1 | AT2G39270 | 64.192 | 229 | 58 | 1 | 18 | 246 | 46 | 250 | 7.68e-87 | 260 |
| MS.gene09796.t1 | AT3G01820 | 40.816 | 147 | 63 | 1 | 34 | 180 | 60 | 182 | 1.08e-29 | 112 |
| MS.gene09796.t1 | AT5G35170 | 30.870 | 230 | 115 | 5 | 18 | 245 | 62 | 249 | 3.59e-25 | 103 |
| MS.gene09796.t1 | AT5G35170 | 30.870 | 230 | 115 | 5 | 18 | 245 | 62 | 249 | 3.75e-25 | 103 |
| MS.gene09796.t1 | AT5G63400 | 28.780 | 205 | 114 | 4 | 40 | 244 | 37 | 209 | 1.21e-19 | 85.1 |
| MS.gene09796.t1 | AT5G50370 | 28.155 | 206 | 116 | 4 | 40 | 245 | 38 | 211 | 1.79e-19 | 84.7 |
| MS.gene09796.t1 | AT5G50370 | 28.155 | 206 | 116 | 4 | 40 | 245 | 38 | 211 | 1.86e-19 | 84.3 |
| MS.gene09796.t1 | AT5G63400 | 29.487 | 156 | 89 | 2 | 40 | 195 | 37 | 171 | 1.32e-17 | 78.6 |
| MS.gene09796.t1 | AT5G47840 | 27.805 | 205 | 105 | 4 | 43 | 245 | 71 | 234 | 1.87e-17 | 79.7 |
| MS.gene09796.t1 | AT5G47840 | 27.805 | 205 | 105 | 4 | 43 | 245 | 71 | 234 | 2.05e-17 | 79.7 |
| MS.gene09796.t1 | AT3G60180 | 33.333 | 99 | 63 | 1 | 28 | 126 | 13 | 108 | 3.67e-13 | 66.6 |
| MS.gene09796.t1 | AT3G60180 | 33.333 | 99 | 63 | 1 | 28 | 126 | 13 | 108 | 3.67e-13 | 66.6 |
| MS.gene09796.t1 | AT5G26667 | 34.884 | 86 | 53 | 1 | 42 | 127 | 20 | 102 | 2.95e-12 | 64.3 |
| MS.gene09796.t1 | AT5G26667 | 34.884 | 86 | 53 | 1 | 42 | 127 | 20 | 102 | 2.95e-12 | 64.3 |
| MS.gene09796.t1 | AT5G26667 | 34.884 | 86 | 53 | 1 | 42 | 127 | 20 | 102 | 2.95e-12 | 64.3 |
| MS.gene09796.t1 | AT5G26667 | 34.884 | 86 | 53 | 1 | 42 | 127 | 20 | 102 | 3.60e-12 | 63.9 |
| MS.gene09796.t1 | AT4G25280 | 30.303 | 99 | 66 | 1 | 29 | 127 | 46 | 141 | 3.75e-12 | 64.7 |
| MS.gene09796.t1 | AT4G25280 | 30.303 | 99 | 66 | 1 | 29 | 127 | 46 | 141 | 3.75e-12 | 64.7 |
Find 79 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTTCATCTGACACTAAT+TGG | 0.227977 | 7.3:-12329863 | None:intergenic |
| ATTCTCACCCTTGATGTTAA+TGG | 0.236959 | 7.3:-12330258 | None:intergenic |
| TTCCAATATTTCCTGATTCA+TGG | 0.247894 | 7.3:-12330120 | None:intergenic |
| TTCCATGAATCAGGAAATAT+TGG | 0.279986 | 7.3:+12330118 | MS.gene09796:CDS |
| TCCACGCGCTAAGGGATAAA+AGG | 0.310626 | 7.3:-12328689 | None:intergenic |
| GCGTTTAACAAGGCGGGTTA+TGG | 0.353215 | 7.3:-12328659 | None:intergenic |
| GGACGAGCCAAAGGCGAATC+AGG | 0.363002 | 7.3:+12329918 | MS.gene09796:CDS |
| ACGCGCCACCGCGTGATAAC+AGG | 0.363520 | 7.3:+12328734 | MS.gene09796:CDS |
| TTGCAAGCAGTGCTTCTTCT+CGG | 0.365762 | 7.3:-12330181 | None:intergenic |
| AATGAAACCTGATTCGCCTT+TGG | 0.391502 | 7.3:-12329925 | None:intergenic |
| CGCCATGAGCTTTCCTCCAA+TGG | 0.396544 | 7.3:+12328865 | MS.gene09796:CDS |
| AGGGGAGCCATACTAATTCC+AGG | 0.402077 | 7.3:-12330287 | None:intergenic |
| GAATCAGGTTTCATTCTTGA+TGG | 0.402493 | 7.3:+12329933 | MS.gene09796:CDS |
| TTCTTAGGCTGTCCCGGCGT+TGG | 0.409479 | 7.3:+12328772 | MS.gene09796:CDS |
| TTCGCCTTTGGCTCGTCCTT+CGG | 0.413354 | 7.3:-12329913 | None:intergenic |
| AAATGGAACCTGGGAAGAAA+GGG | 0.413958 | 7.3:-12328890 | None:intergenic |
| CGAAGCCTTTCTTTGACTAC+TGG | 0.419226 | 7.3:-12330365 | None:intergenic |
| AAAATGGAACCTGGGAAGAA+AGG | 0.419929 | 7.3:-12328891 | None:intergenic |
| GCTTCGTATATACAATGAAT+TGG | 0.421380 | 7.3:+12330382 | MS.gene09796:CDS |
| ATTAACATCAAGGGTGAGAA+TGG | 0.438121 | 7.3:+12330260 | MS.gene09796:CDS |
| ACTGCTTGCTTTATTGTTCG+AGG | 0.454143 | 7.3:-12329960 | None:intergenic |
| GTCCAAGCTCATCACTCGTT+CGG | 0.462893 | 7.3:+12330331 | MS.gene09796:CDS |
| TACAATGCTCAGGAGGAAGC+AGG | 0.474529 | 7.3:-12330307 | None:intergenic |
| GGCTGTCCCGGCGTTGGTAA+AGG | 0.475495 | 7.3:+12328778 | MS.gene09796:CDS |
| CGGTGGCGCGTGAGAATATG+AGG | 0.478955 | 7.3:-12328722 | None:intergenic |
| AGCCGCCTCTGCAACCTCCT+CGG | 0.480794 | 7.3:+12328811 | MS.gene09796:CDS |
| GTTGCAGAGGCGGCTGGCGT+AGG | 0.481502 | 7.3:-12328803 | None:intergenic |
| TGTTGCCTCCATTAACATCA+AGG | 0.487139 | 7.3:+12330250 | MS.gene09796:CDS |
| GGAGGAGAATCCACGCGCTA+AGG | 0.487598 | 7.3:-12328698 | None:intergenic |
| CACCGAGGAGGTTGCAGAGG+CGG | 0.490243 | 7.3:-12328813 | None:intergenic |
| GAGCTTGTTGTCTAAGAGAC+TGG | 0.490979 | 7.3:+12329890 | MS.gene09796:CDS |
| TGGGTGCCCTGGAATTAGTA+TGG | 0.509227 | 7.3:+12330280 | MS.gene09796:CDS |
| CTGAACCAGTAGTCAAAGAA+AGG | 0.515149 | 7.3:+12330360 | MS.gene09796:CDS |
| GAGGAGGTTGCAGAGGCGGC+TGG | 0.516659 | 7.3:-12328809 | None:intergenic |
| AAGGGTGAGAATGGGTGCCC+TGG | 0.527488 | 7.3:+12330269 | MS.gene09796:CDS |
| CTGGCCGAAGGACGAGCCAA+AGG | 0.528270 | 7.3:+12329909 | MS.gene09796:CDS |
| TGTGGTGCGTTTAACAAGGC+GGG | 0.531626 | 7.3:-12328665 | None:intergenic |
| AGCTTGGACATACAATGCTC+AGG | 0.536250 | 7.3:-12330317 | None:intergenic |
| GGTGTTCCTCACATCGCTAC+CGG | 0.536592 | 7.3:+12328832 | MS.gene09796:CDS |
| GGCCATTGGAGGAAAGCTCA+TGG | 0.538613 | 7.3:-12328867 | None:intergenic |
| CGCGTGAGAATATGAGGAGG+AGG | 0.547324 | 7.3:-12328716 | None:intergenic |
| GGTGACAGACATTGACTTGG+TGG | 0.549406 | 7.3:+12330145 | MS.gene09796:CDS |
| CTCATGGCGAACAAGATCTC+CGG | 0.552425 | 7.3:-12328851 | None:intergenic |
| ACAATGCTCAGGAGGAAGCA+GGG | 0.553118 | 7.3:-12330306 | None:intergenic |
| ATGAATCAGGAAATATTGGA+AGG | 0.560014 | 7.3:+12330122 | MS.gene09796:CDS |
| TTAACATCAAGGGTGAGAAT+GGG | 0.564208 | 7.3:+12330261 | MS.gene09796:CDS |
| GAATCAGGAAATATTGGAAG+GGG | 0.571838 | 7.3:+12330124 | MS.gene09796:CDS |
| CGCTAAGGGATAAAAGGATG+TGG | 0.573069 | 7.3:-12328683 | None:intergenic |
| CTATCAGAAATCGTAAATCA+AGG | 0.576086 | 7.3:+12329840 | MS.gene09796:CDS |
| CTCACCCTTGATGTTAATGG+AGG | 0.585838 | 7.3:-12330255 | None:intergenic |
| ATCCGAACGAGTGATGAGCT+TGG | 0.590005 | 7.3:-12330333 | None:intergenic |
| TGAATCAGGAAATATTGGAA+GGG | 0.590988 | 7.3:+12330123 | MS.gene09796:CDS |
| TAGGTACCTTTACCAACGCC+GGG | 0.591127 | 7.3:-12328784 | None:intergenic |
| GACTGCAAGTTCTCCTACCG+AGG | 0.599285 | 7.3:-12330208 | None:intergenic |
| GCACTGCTTGCAAAATGCCT+CGG | 0.600739 | 7.3:+12330191 | MS.gene09796:CDS |
| GTTGCCTCCATTAACATCAA+GGG | 0.606046 | 7.3:+12330251 | MS.gene09796:CDS |
| GAACACCGAGGAGGTTGCAG+AGG | 0.607957 | 7.3:-12328816 | None:intergenic |
| GAGGAGAATCCACGCGCTAA+GGG | 0.613124 | 7.3:-12328697 | None:intergenic |
| TGATAACAGGAATATTCAGT+GGG | 0.619397 | 7.3:+12328747 | MS.gene09796:CDS |
| GGGGAGCCATACTAATTCCA+GGG | 0.625204 | 7.3:-12330286 | None:intergenic |
| AGGATGTGGTGCGTTTAACA+AGG | 0.626478 | 7.3:-12328669 | None:intergenic |
| CAATGCTCAGGAGGAAGCAG+GGG | 0.629253 | 7.3:-12330305 | None:intergenic |
| GTGATAACAGGAATATTCAG+TGG | 0.631365 | 7.3:+12328746 | MS.gene09796:CDS |
| AATGGAACCTGGGAAGAAAG+GGG | 0.635071 | 7.3:-12328889 | None:intergenic |
| GTAGGTACCTTTACCAACGC+CGG | 0.638576 | 7.3:-12328785 | None:intergenic |
| TGCTTGCAAAATGCCTCGGT+AGG | 0.644240 | 7.3:+12330195 | MS.gene09796:CDS |
| AGAACTTGCAGTCAGTGTGG+AGG | 0.647767 | 7.3:+12330218 | MS.gene09796:CDS |
| TTGTCTAAGAGACTGGCCGA+AGG | 0.649173 | 7.3:+12329897 | MS.gene09796:CDS |
| ATGGAACCTGGGAAGAAAGG+GGG | 0.650436 | 7.3:-12328888 | None:intergenic |
| AGATCTCCGGTAGCGATGTG+AGG | 0.653463 | 7.3:-12328838 | None:intergenic |
| TTGGACATACAATGCTCAGG+AGG | 0.663374 | 7.3:-12330314 | None:intergenic |
| ATATTCCTGTTATCACGCGG+TGG | 0.668275 | 7.3:-12328739 | None:intergenic |
| AGGGGTGACAGACATTGACT+TGG | 0.668576 | 7.3:+12330142 | MS.gene09796:CDS |
| AGGAGAACTTGCAGTCAGTG+TGG | 0.669907 | 7.3:+12330215 | MS.gene09796:CDS |
| ATGTGGTGCGTTTAACAAGG+CGG | 0.679658 | 7.3:-12328666 | None:intergenic |
| TGAATATTCCTGTTATCACG+CGG | 0.715299 | 7.3:-12328742 | None:intergenic |
| CGATGTGAGGAACACCGAGG+AGG | 0.716688 | 7.3:-12328825 | None:intergenic |
| TGGCGCGTGAGAATATGAGG+AGG | 0.729208 | 7.3:-12328719 | None:intergenic |
| TAGCGATGTGAGGAACACCG+AGG | 0.819027 | 7.3:-12328828 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAGGAAAAATAAAA+TGG | - | chr7.3:12328910-12328929 | None:intergenic | 10.0% |
| !!! | AATAATATTAAAACTTTTAG+TGG | - | chr7.3:12329622-12329641 | None:intergenic | 10.0% |
| !!! | TTTTCATTTTGAATAAAAAA+AGG | - | chr7.3:12328923-12328942 | None:intergenic | 10.0% |
| !! | ATTAACAATCATATTGTTTA+AGG | - | chr7.3:12329497-12329516 | None:intergenic | 15.0% |
| !!! | GGACTTTTTATATTAATAAT+AGG | + | chr7.3:12330037-12330056 | MS.gene09796:intron | 15.0% |
| !! | ATAAAAAGTCCTTAAAAACT+AGG | - | chr7.3:12330028-12330047 | None:intergenic | 20.0% |
| !! | CCAAAGCATATAATAATAAA+AGG | - | chr7.3:12328958-12328977 | None:intergenic | 20.0% |
| !!! | CCTTTTATTATTATATGCTT+TGG | + | chr7.3:12328955-12328974 | MS.gene09796:intron | 20.0% |
| !!! | TTTTTGATAATACATAGCAA+TGG | + | chr7.3:12329655-12329674 | MS.gene09796:intron | 20.0% |
| ! | AAATGATGATTGACATTCTA+TGG | + | chr7.3:12329375-12329394 | MS.gene09796:intron | 25.0% |
| ! | CATGTAATAAGCTGTAATTA+TGG | + | chr7.3:12329241-12329260 | MS.gene09796:intron | 25.0% |
| ! | TAATTTCATCTGACACTAAT+TGG | - | chr7.3:12329866-12329885 | None:intergenic | 25.0% |
| ! | TTAACAATCAGAATTGTTGA+AGG | - | chr7.3:12329357-12329376 | None:intergenic | 25.0% |
| ! | TTTATGTGTCTTCAATACTT+TGG | + | chr7.3:12329158-12329177 | MS.gene09796:intron | 25.0% |
| !! | ATTATATGCTTTGGTTTAGT+TGG | + | chr7.3:12328964-12328983 | MS.gene09796:intron | 25.0% |
| !! | TGTATTATTTTCCATGAATC+AGG | + | chr7.3:12330109-12330128 | MS.gene09796:CDS | 25.0% |
| !!! | TGATATTGATAGCGTAAAAT+GGG | + | chr7.3:12329003-12329022 | MS.gene09796:intron | 25.0% |
| AATCTCTGATTCATGTTTCA+TGG | + | chr7.3:12329305-12329324 | MS.gene09796:intron | 30.0% | |
| AGGAAAAATAAAATGGAACC+TGG | - | chr7.3:12328903-12328922 | None:intergenic | 30.0% | |
| ATGAATCAGGAAATATTGGA+AGG | + | chr7.3:12330122-12330141 | MS.gene09796:CDS | 30.0% | |
| CTATCAGAAATCGTAAATCA+AGG | + | chr7.3:12329840-12329859 | MS.gene09796:CDS | 30.0% | |
| GGAAAAATAAAATGGAACCT+GGG | - | chr7.3:12328902-12328921 | None:intergenic | 30.0% | |
| TGAATCAGGAAATATTGGAA+GGG | + | chr7.3:12330123-12330142 | MS.gene09796:CDS | 30.0% | |
| TGATAACAGGAATATTCAGT+GGG | + | chr7.3:12328747-12328766 | MS.gene09796:CDS | 30.0% | |
| TTCCAATATTTCCTGATTCA+TGG | - | chr7.3:12330123-12330142 | None:intergenic | 30.0% | |
| TTCCATGAATCAGGAAATAT+TGG | + | chr7.3:12330118-12330137 | MS.gene09796:CDS | 30.0% | |
| ! | ATTGAAGATAGCATGGTTTT+TGG | + | chr7.3:12329734-12329753 | MS.gene09796:intron | 30.0% |
| ! | TTGGACTCATTTGTTAAATC+TGG | + | chr7.3:12329177-12329196 | MS.gene09796:intron | 30.0% |
| !! | AATATTCAGTGGGTTTTCTT+AGG | + | chr7.3:12328757-12328776 | MS.gene09796:CDS | 30.0% |
| !! | CTGATATTGATAGCGTAAAA+TGG | + | chr7.3:12329002-12329021 | MS.gene09796:intron | 30.0% |
| !!! | AAAATTTGTGCTTTTTCGAC+TGG | + | chr7.3:12329123-12329142 | MS.gene09796:intron | 30.0% |
| AAGTCCTTAAAAACTAGGAC+AGG | - | chr7.3:12330023-12330042 | None:intergenic | 35.0% | |
| AGTCCTTAAAAACTAGGACA+GGG | - | chr7.3:12330022-12330041 | None:intergenic | 35.0% | |
| AGTGTGAATTGAAGATAGCA+TGG | + | chr7.3:12329727-12329746 | MS.gene09796:intron | 35.0% | |
| ATTAACATCAAGGGTGAGAA+TGG | + | chr7.3:12330260-12330279 | MS.gene09796:CDS | 35.0% | |
| ATTCTCACCCTTGATGTTAA+TGG | - | chr7.3:12330261-12330280 | None:intergenic | 35.0% | |
| GAATCAGGAAATATTGGAAG+GGG | + | chr7.3:12330124-12330143 | MS.gene09796:CDS | 35.0% | |
| GAATCAGGTTTCATTCTTGA+TGG | + | chr7.3:12329933-12329952 | MS.gene09796:CDS | 35.0% | |
| GTGATAACAGGAATATTCAG+TGG | + | chr7.3:12328746-12328765 | MS.gene09796:CDS | 35.0% | |
| TCACACTCACACAAGAATTA+AGG | - | chr7.3:12329714-12329733 | None:intergenic | 35.0% | |
| TCTGGCTATGTAAGAAATCA+TGG | + | chr7.3:12329195-12329214 | MS.gene09796:intron | 35.0% | |
| TGAATATTCCTGTTATCACG+CGG | - | chr7.3:12328745-12328764 | None:intergenic | 35.0% | |
| TTAACATCAAGGGTGAGAAT+GGG | + | chr7.3:12330261-12330280 | MS.gene09796:CDS | 35.0% | |
| TTCATGTTTCATGGTTCAAC+TGG | + | chr7.3:12329314-12329333 | MS.gene09796:intron | 35.0% | |
| TTCCATCGAAAAATGACACA+AGG | + | chr7.3:12330081-12330100 | MS.gene09796:CDS | 35.0% | |
| !! | GCGTAAAATGGGTTATTCTA+TGG | + | chr7.3:12329014-12329033 | MS.gene09796:intron | 35.0% |
| !! | TTTTTCGACTGGCTATGTTT+TGG | + | chr7.3:12329134-12329153 | MS.gene09796:intron | 35.0% |
| !!! | TTCCTTGTGTCATTTTTCGA+TGG | - | chr7.3:12330086-12330105 | None:intergenic | 35.0% |
| AAAATGGAACCTGGGAAGAA+AGG | - | chr7.3:12328894-12328913 | None:intergenic | 40.0% | |
| AAATGGAACCTGGGAAGAAA+GGG | - | chr7.3:12328893-12328912 | None:intergenic | 40.0% | |
| CCATCAAAAAGCAGAATGCA+TGG | - | chr7.3:12329522-12329541 | None:intergenic | 40.0% | |
| CTGAACCAGTAGTCAAAGAA+AGG | + | chr7.3:12330360-12330379 | MS.gene09796:CDS | 40.0% | |
| GTCCTTAAAAACTAGGACAG+GGG | - | chr7.3:12330021-12330040 | None:intergenic | 40.0% | |
| GTTGCCTCCATTAACATCAA+GGG | + | chr7.3:12330251-12330270 | MS.gene09796:CDS | 40.0% | |
| TGTTGCCTCCATTAACATCA+AGG | + | chr7.3:12330250-12330269 | MS.gene09796:CDS | 40.0% | |
| ! | AATGAAACCTGATTCGCCTT+TGG | - | chr7.3:12329928-12329947 | None:intergenic | 40.0% |
| ! | ACTGCTTGCTTTATTGTTCG+AGG | - | chr7.3:12329963-12329982 | None:intergenic | 40.0% |
| ! | CTTGTCACTTATCAGTGTGT+TGG | + | chr7.3:12329278-12329297 | MS.gene09796:intron | 40.0% |
| !! | TCATGGTTCAACTGGTTTGA+TGG | + | chr7.3:12329322-12329341 | MS.gene09796:intron | 40.0% |
| !!! | CCATGCATTCTGCTTTTTGA+TGG | + | chr7.3:12329519-12329538 | MS.gene09796:intron | 40.0% |
| !!! | CTTTTGTCACTTGTTGTCGT+TGG | + | chr7.3:12329403-12329422 | MS.gene09796:intron | 40.0% |
| AAAAACTAGGACAGGGGTGA+GGG | - | chr7.3:12330015-12330034 | None:intergenic | 45.0% | |
| AATGGAACCTGGGAAGAAAG+GGG | - | chr7.3:12328892-12328911 | None:intergenic | 45.0% | |
| AGCTTGGACATACAATGCTC+AGG | - | chr7.3:12330320-12330339 | None:intergenic | 45.0% | |
| AGGATGTGGTGCGTTTAACA+AGG | - | chr7.3:12328672-12328691 | None:intergenic | 45.0% | |
| ATATTCCTGTTATCACGCGG+TGG | - | chr7.3:12328742-12328761 | None:intergenic | 45.0% | |
| ATGTGGTGCGTTTAACAAGG+CGG | - | chr7.3:12328669-12328688 | None:intergenic | 45.0% | |
| ATTGACGCAAATCACGCAGA+TGG | - | chr7.3:12329086-12329105 | None:intergenic | 45.0% | |
| CGAAGCCTTTCTTTGACTAC+TGG | - | chr7.3:12330368-12330387 | None:intergenic | 45.0% | |
| CGCTAAGGGATAAAAGGATG+TGG | - | chr7.3:12328686-12328705 | None:intergenic | 45.0% | |
| CTCACCCTTGATGTTAATGG+AGG | - | chr7.3:12330258-12330277 | None:intergenic | 45.0% | |
| TAAAAACTAGGACAGGGGTG+AGG | - | chr7.3:12330016-12330035 | None:intergenic | 45.0% | |
| TTGACGCAAATCACGCAGAT+GGG | - | chr7.3:12329085-12329104 | None:intergenic | 45.0% | |
| TTGCAAGCAGTGCTTCTTCT+CGG | - | chr7.3:12330184-12330203 | None:intergenic | 45.0% | |
| TTGGACATACAATGCTCAGG+AGG | - | chr7.3:12330317-12330336 | None:intergenic | 45.0% | |
| !! | CACCCCTGTCCTAGTTTTTA+AGG | + | chr7.3:12330016-12330035 | MS.gene09796:intron | 45.0% |
| !! | GAGCTTGTTGTCTAAGAGAC+TGG | + | chr7.3:12329890-12329909 | MS.gene09796:CDS | 45.0% |
| !!! | TAATATTATTAATTTTTTTG+AGG | + | chr7.3:12329632-12329651 | MS.gene09796:intron | 5.0% |
| AAAACTAGGACAGGGGTGAG+GGG | - | chr7.3:12330014-12330033 | None:intergenic | 50.0% | |
| ACAATGCTCAGGAGGAAGCA+GGG | - | chr7.3:12330309-12330328 | None:intergenic | 50.0% | |
| AGAACTTGCAGTCAGTGTGG+AGG | + | chr7.3:12330218-12330237 | MS.gene09796:CDS | 50.0% | |
| AGGAGAACTTGCAGTCAGTG+TGG | + | chr7.3:12330215-12330234 | MS.gene09796:CDS | 50.0% | |
| AGGGGAGCCATACTAATTCC+AGG | - | chr7.3:12330290-12330309 | None:intergenic | 50.0% | |
| ATCCGAACGAGTGATGAGCT+TGG | - | chr7.3:12330336-12330355 | None:intergenic | 50.0% | |
| ATGGAACCTGGGAAGAAAGG+GGG | - | chr7.3:12328891-12328910 | None:intergenic | 50.0% | |
| CTCATGGCGAACAAGATCTC+CGG | - | chr7.3:12328854-12328873 | None:intergenic | 50.0% | |
| GCACTGCTTGCAAAATGCCT+CGG | + | chr7.3:12330191-12330210 | MS.gene09796:CDS | 50.0% | |
| GGGGAGCCATACTAATTCCA+GGG | - | chr7.3:12330289-12330308 | None:intergenic | 50.0% | |
| GTAGGTACCTTTACCAACGC+CGG | - | chr7.3:12328788-12328807 | None:intergenic | 50.0% | |
| GTCCAAGCTCATCACTCGTT+CGG | + | chr7.3:12330331-12330350 | MS.gene09796:CDS | 50.0% | |
| TACAATGCTCAGGAGGAAGC+AGG | - | chr7.3:12330310-12330329 | None:intergenic | 50.0% | |
| TAGGTACCTTTACCAACGCC+GGG | - | chr7.3:12328787-12328806 | None:intergenic | 50.0% | |
| TCCACGCGCTAAGGGATAAA+AGG | - | chr7.3:12328692-12328711 | None:intergenic | 50.0% | |
| TGCTTGCAAAATGCCTCGGT+AGG | + | chr7.3:12330195-12330214 | MS.gene09796:CDS | 50.0% | |
| TGGGTGCCCTGGAATTAGTA+TGG | + | chr7.3:12330280-12330299 | MS.gene09796:CDS | 50.0% | |
| TGTGGTGCGTTTAACAAGGC+GGG | - | chr7.3:12328668-12328687 | None:intergenic | 50.0% | |
| ! | AGGGGTGACAGACATTGACT+TGG | + | chr7.3:12330142-12330161 | MS.gene09796:CDS | 50.0% |
| ! | TCCTTTTATCCCTTAGCGCG+TGG | + | chr7.3:12328688-12328707 | MS.gene09796:CDS | 50.0% |
| ! | TGGGTTTTCTTAGGCTGTCC+CGG | + | chr7.3:12328766-12328785 | MS.gene09796:CDS | 50.0% |
| ! | TTGTCTAAGAGACTGGCCGA+AGG | + | chr7.3:12329897-12329916 | MS.gene09796:CDS | 50.0% |
| !! | GCGTTTAACAAGGCGGGTTA+TGG | - | chr7.3:12328662-12328681 | None:intergenic | 50.0% |
| !! | GGTGACAGACATTGACTTGG+TGG | + | chr7.3:12330145-12330164 | MS.gene09796:CDS | 50.0% |
| AGATCTCCGGTAGCGATGTG+AGG | - | chr7.3:12328841-12328860 | None:intergenic | 55.0% | |
| CAATGCTCAGGAGGAAGCAG+GGG | - | chr7.3:12330308-12330327 | None:intergenic | 55.0% | |
| CGCCATGAGCTTTCCTCCAA+TGG | + | chr7.3:12328865-12328884 | MS.gene09796:CDS | 55.0% | |
| CGCGTGAGAATATGAGGAGG+AGG | - | chr7.3:12328719-12328738 | None:intergenic | 55.0% | |
| GACTGCAAGTTCTCCTACCG+AGG | - | chr7.3:12330211-12330230 | None:intergenic | 55.0% | |
| GAGGAGAATCCACGCGCTAA+GGG | - | chr7.3:12328700-12328719 | None:intergenic | 55.0% | |
| GGCCATTGGAGGAAAGCTCA+TGG | - | chr7.3:12328870-12328889 | None:intergenic | 55.0% | |
| GGTGTTCCTCACATCGCTAC+CGG | + | chr7.3:12328832-12328851 | MS.gene09796:CDS | 55.0% | |
| TAGCGATGTGAGGAACACCG+AGG | - | chr7.3:12328831-12328850 | None:intergenic | 55.0% | |
| TGGCGCGTGAGAATATGAGG+AGG | - | chr7.3:12328722-12328741 | None:intergenic | 55.0% | |
| ! | TTCGCCTTTGGCTCGTCCTT+CGG | - | chr7.3:12329916-12329935 | None:intergenic | 55.0% |
| AAGGGTGAGAATGGGTGCCC+TGG | + | chr7.3:12330269-12330288 | MS.gene09796:CDS | 60.0% | |
| CAATGGCCCCCTTTCTTCCC+AGG | + | chr7.3:12328882-12328901 | MS.gene09796:CDS | 60.0% | |
| CGATGTGAGGAACACCGAGG+AGG | - | chr7.3:12328828-12328847 | None:intergenic | 60.0% | |
| CGGTGGCGCGTGAGAATATG+AGG | - | chr7.3:12328725-12328744 | None:intergenic | 60.0% | |
| CTGGGAAGAAAGGGGGCCAT+TGG | - | chr7.3:12328884-12328903 | None:intergenic | 60.0% | |
| GAACACCGAGGAGGTTGCAG+AGG | - | chr7.3:12328819-12328838 | None:intergenic | 60.0% | |
| GGAAGAAAGGGGGCCATTGG+AGG | - | chr7.3:12328881-12328900 | None:intergenic | 60.0% | |
| GGACGAGCCAAAGGCGAATC+AGG | + | chr7.3:12329918-12329937 | MS.gene09796:CDS | 60.0% | |
| GGAGGAGAATCCACGCGCTA+AGG | - | chr7.3:12328701-12328720 | None:intergenic | 60.0% | |
| TTCTTAGGCTGTCCCGGCGT+TGG | + | chr7.3:12328772-12328791 | MS.gene09796:CDS | 60.0% | |
| ACGCGCCACCGCGTGATAAC+AGG | + | chr7.3:12328734-12328753 | MS.gene09796:CDS | 65.0% | |
| AGCCGCCTCTGCAACCTCCT+CGG | + | chr7.3:12328811-12328830 | MS.gene09796:CDS | 65.0% | |
| CACCGAGGAGGTTGCAGAGG+CGG | - | chr7.3:12328816-12328835 | None:intergenic | 65.0% | |
| CTGGCCGAAGGACGAGCCAA+AGG | + | chr7.3:12329909-12329928 | MS.gene09796:CDS | 65.0% | |
| !! | GGCTGTCCCGGCGTTGGTAA+AGG | + | chr7.3:12328778-12328797 | MS.gene09796:CDS | 65.0% |
| GAGGAGGTTGCAGAGGCGGC+TGG | - | chr7.3:12328812-12328831 | None:intergenic | 70.0% | |
| GTTGCAGAGGCGGCTGGCGT+AGG | - | chr7.3:12328806-12328825 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 12328652 | 12330403 | 12328652 | ID=MS.gene09796 |
| chr7.3 | mRNA | 12328652 | 12330403 | 12328652 | ID=MS.gene09796.t1;Parent=MS.gene09796 |
| chr7.3 | exon | 12328652 | 12328903 | 12328652 | ID=MS.gene09796.t1.exon1;Parent=MS.gene09796.t1 |
| chr7.3 | CDS | 12328652 | 12328903 | 12328652 | ID=cds.MS.gene09796.t1;Parent=MS.gene09796.t1 |
| chr7.3 | exon | 12329840 | 12329980 | 12329840 | ID=MS.gene09796.t1.exon2;Parent=MS.gene09796.t1 |
| chr7.3 | CDS | 12329840 | 12329980 | 12329840 | ID=cds.MS.gene09796.t1;Parent=MS.gene09796.t1 |
| chr7.3 | exon | 12330059 | 12330403 | 12330059 | ID=MS.gene09796.t1.exon3;Parent=MS.gene09796.t1 |
| chr7.3 | CDS | 12330059 | 12330403 | 12330059 | ID=cds.MS.gene09796.t1;Parent=MS.gene09796.t1 |
| Gene Sequence |
| Protein sequence |
