Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09921.t1 | XP_003611484.1 | 99.4 | 323 | 2 | 0 | 1 | 323 | 1 | 323 | 3.30E-174 | 620.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09921.t1 | G7JZY8 | 99.4 | 323 | 2 | 0 | 1 | 323 | 1 | 323 | 2.4e-174 | 620.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04938 | MS.gene09921 | 0.835212 | 1.91E-56 | -1.69E-46 |
| MS.gene04939 | MS.gene09921 | 0.833787 | 4.36E-56 | -1.69E-46 |
| MS.gene052615 | MS.gene09921 | 0.825592 | 4.31E-54 | -1.69E-46 |
| MS.gene057076 | MS.gene09921 | 0.809816 | 1.57E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09921.t1 | MTR_5g014430 | 99.381 | 323 | 2 | 0 | 1 | 323 | 1 | 323 | 0.0 | 655 |
| MS.gene09921.t1 | MTR_5g014430 | 95.765 | 307 | 11 | 1 | 1 | 305 | 1 | 307 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09921.t1 | AT2G35260 | 68.810 | 311 | 81 | 6 | 22 | 323 | 30 | 333 | 4.65e-134 | 386 |
| MS.gene09921.t1 | AT4G17840 | 77.447 | 235 | 53 | 0 | 89 | 323 | 139 | 373 | 7.83e-122 | 357 |
Find 80 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTGTTTCAGGGATTTA+TGG | 0.164753 | 5.2:-6413394 | MS.gene09921:intron |
| CTATGGCATGTCCCCTTTGC+AGG | 0.237654 | 5.2:-6412688 | MS.gene09921:intron |
| CTTCTACAGGGCTGCAGTTC+AGG | 0.247355 | 5.2:-6412533 | MS.gene09921:intron |
| TGCTGCTGACTTTCCTGTTT+GGG | 0.252831 | 5.2:-6413713 | MS.gene09921:CDS |
| ATATGCAGTTCCTCCAATTA+TGG | 0.280024 | 5.2:-6413272 | MS.gene09921:CDS |
| CCCACTTCTGGAAGGACTAT+TGG | 0.291896 | 5.2:-6411035 | MS.gene09921:CDS |
| GTGCTGCTGACTTTCCTGTT+TGG | 0.306301 | 5.2:-6413714 | MS.gene09921:CDS |
| GTACTTACAGCTGTCCTTAC+TGG | 0.313443 | 5.2:-6411875 | MS.gene09921:CDS |
| GATGCTATTGTTCAAGGGCT+TGG | 0.328172 | 5.2:-6413295 | MS.gene09921:CDS |
| TTACTGGAATTGACTCTCTT+GGG | 0.331878 | 5.2:-6413336 | MS.gene09921:CDS |
| TGTCTCACCTCTGTCATCTA+TGG | 0.342156 | 5.2:+6413810 | None:intergenic |
| TGTTCGAGGAATGGCGTCTT+TGG | 0.346224 | 5.2:-6412195 | MS.gene09921:intron |
| ATGTAGAGGATGAAGAACTA+TGG | 0.367296 | 5.2:-6412719 | MS.gene09921:CDS |
| TATGGTGCTATGGCTGTTGC+GGG | 0.376737 | 5.2:-6413376 | MS.gene09921:CDS |
| ATTACTGGAATTGACTCTCT+TGG | 0.377179 | 5.2:-6413337 | MS.gene09921:CDS |
| CAATAGCATCTAATGATAGA+TGG | 0.409928 | 5.2:+6413308 | None:intergenic |
| TCATTAGATGCTATTGTTCA+AGG | 0.413215 | 5.2:-6413301 | MS.gene09921:CDS |
| CTTCAAGAGTTGTTTCTGTT+CGG | 0.420358 | 5.2:-6413867 | MS.gene09921:CDS |
| TTTATCAAATTACCTGCAAA+GGG | 0.425420 | 5.2:+6412676 | None:intergenic |
| CTAGCACGAGATTGTAAAAC+AGG | 0.433223 | 5.2:+6411692 | None:intergenic |
| AATTTCATCAAAGGAAGAAA+AGG | 0.433452 | 5.2:-6413906 | MS.gene09921:CDS |
| TACTGGTTCTCTCTATTATG+TGG | 0.435452 | 5.2:-6411858 | MS.gene09921:CDS |
| GACAGAGGTGAGACAAGAAC+CGG | 0.445196 | 5.2:-6413802 | MS.gene09921:CDS |
| GCTGCAAGTGCCTGAGCAAA+TGG | 0.445585 | 5.2:+6411899 | None:intergenic |
| TGCTGCAAGTTCGGTGGGAG+AGG | 0.446375 | 5.2:-6412560 | MS.gene09921:CDS |
| TGGGAGAGGAGCTCTTCTAC+AGG | 0.448169 | 5.2:-6412546 | MS.gene09921:CDS |
| ATCTCTAATGGCACGGGCAT+AGG | 0.451890 | 5.2:+6412740 | None:intergenic |
| ACCATTTGTTCCATTTGCTC+AGG | 0.457763 | 5.2:-6411909 | MS.gene09921:CDS |
| TGAGAGAGTGAAGTTGAAGA+AGG | 0.458614 | 5.2:+6413946 | None:intergenic |
| TTCATCCTCTACATCTCTAA+TGG | 0.465534 | 5.2:+6412728 | None:intergenic |
| AGTGAAGTTGAAGAAGGGTT+TGG | 0.467254 | 5.2:+6413952 | None:intergenic |
| ACTGATGGTTGCTGCAAGTT+CGG | 0.469127 | 5.2:-6412569 | MS.gene09921:CDS |
| GCCAATAGTCCTTCCAGAAG+TGG | 0.470965 | 5.2:+6411034 | None:intergenic |
| GTTCACTACACCTGCAGCTA+TGG | 0.474623 | 5.2:-6413779 | MS.gene09921:CDS |
| AAAGCTTCTGCAGAGAGAAC+TGG | 0.475828 | 5.2:-6413838 | MS.gene09921:CDS |
| TTATGGTGCTATGGCTGTTG+CGG | 0.483548 | 5.2:-6413377 | MS.gene09921:CDS |
| TCTCTAATGGCACGGGCATA+GGG | 0.483690 | 5.2:+6412741 | None:intergenic |
| GAGAGAGTGAAGTTGAAGAA+GGG | 0.488119 | 5.2:+6413947 | None:intergenic |
| TTTCCTGTTTGGGAAAAGAT+TGG | 0.488590 | 5.2:-6413703 | MS.gene09921:CDS |
| TTCAGGGATTTATGGTGCTA+TGG | 0.492125 | 5.2:-6413386 | MS.gene09921:intron |
| GCCTGAGCAAATGGAACAAA+TGG | 0.495910 | 5.2:+6411908 | None:intergenic |
| TAATTTACAGTTTATACTGA+TGG | 0.502909 | 5.2:-6412584 | MS.gene09921:intron |
| TACTGGAATTGACTCTCTTG+GGG | 0.509127 | 5.2:-6413335 | MS.gene09921:CDS |
| TTGCAGCATGGTATGAGAAA+AGG | 0.509827 | 5.2:-6411078 | MS.gene09921:intron |
| CATTAGATGCTATTGTTCAA+GGG | 0.510033 | 5.2:-6413300 | MS.gene09921:CDS |
| TTGGTGTTAGTGTTAGAGAA+AGG | 0.510398 | 5.2:+6413971 | None:intergenic |
| ATTTCATCAAAGGAAGAAAA+GGG | 0.510946 | 5.2:-6413905 | MS.gene09921:CDS |
| CCAATAGTCCTTCCAGAAGT+GGG | 0.521288 | 5.2:+6411035 | None:intergenic |
| CTCTACATCTCTAATGGCAC+GGG | 0.530651 | 5.2:+6412734 | None:intergenic |
| TATGTGGCTGCCTCTCCTAA+AGG | 0.540575 | 5.2:-6411842 | MS.gene09921:intron |
| GTTAGACTCAGCTATGGAAT+CGG | 0.541683 | 5.2:-6413673 | MS.gene09921:intron |
| ACAGGTGCAACAATATAAGT+AGG | 0.544789 | 5.2:+6411710 | None:intergenic |
| AGCTGCAGGTGTAGTGAACC+CGG | 0.554325 | 5.2:+6413783 | None:intergenic |
| AAAAGAAGAGCCATAATTGG+AGG | 0.560506 | 5.2:+6413262 | None:intergenic |
| CATAATAGAGAGAACCAGTA+AGG | 0.561668 | 5.2:+6411861 | None:intergenic |
| CCTCTACATCTCTAATGGCA+CGG | 0.562261 | 5.2:+6412733 | None:intergenic |
| TATACAAGATGTTCGAGGAA+TGG | 0.565433 | 5.2:-6412204 | MS.gene09921:CDS |
| GTGGTGACTTCCATAGCTGC+AGG | 0.567391 | 5.2:+6413769 | None:intergenic |
| GATGGTTGCTGCAAGTTCGG+TGG | 0.571035 | 5.2:-6412566 | MS.gene09921:CDS |
| CGTGGTTTCAATGATGCTGC+TGG | 0.572740 | 5.2:-6413736 | MS.gene09921:CDS |
| ATCTATTCCCCACTTCTGGA+AGG | 0.575982 | 5.2:-6411043 | MS.gene09921:CDS |
| ACTGGAATTGACTCTCTTGG+GGG | 0.580200 | 5.2:-6413334 | MS.gene09921:CDS |
| GGACTATTGGCTCTCTACCT+CGG | 0.580542 | 5.2:-6411022 | MS.gene09921:CDS |
| AATCTTATACAAGATGTTCG+AGG | 0.582456 | 5.2:-6412209 | MS.gene09921:CDS |
| AGCTATGTGAATTTCATCAA+AGG | 0.595654 | 5.2:-6413915 | MS.gene09921:CDS |
| CCGTGCCATTAGAGATGTAG+AGG | 0.596524 | 5.2:-6412733 | MS.gene09921:CDS |
| GGGAGAGGAGCTCTTCTACA+GGG | 0.602260 | 5.2:-6412545 | MS.gene09921:CDS |
| ATGGTTGCTGCAAGTTCGGT+GGG | 0.610676 | 5.2:-6412565 | MS.gene09921:CDS |
| GCTGTTGTTAGACTCAGCTA+TGG | 0.613019 | 5.2:-6413679 | MS.gene09921:CDS |
| CAGCAGCATCATTGAAACCA+CGG | 0.669168 | 5.2:+6413737 | None:intergenic |
| CAATAGTCCTTCCAGAAGTG+GGG | 0.670663 | 5.2:+6411036 | None:intergenic |
| ACAGAGGTGAGACAAGAACC+GGG | 0.671283 | 5.2:-6413801 | MS.gene09921:CDS |
| ATTGAAACCACGGTTGAATG+TGG | 0.675695 | 5.2:+6413747 | None:intergenic |
| GTCACCACCACATTCAACCG+TGG | 0.675824 | 5.2:-6413754 | MS.gene09921:CDS |
| TGAGCAAATGGAACAAATGG+TGG | 0.702641 | 5.2:+6411911 | None:intergenic |
| TTATCAAATTACCTGCAAAG+GGG | 0.706347 | 5.2:+6412677 | None:intergenic |
| CTTGGATCCACTCAAAACCG+AGG | 0.711747 | 5.2:+6411005 | None:intergenic |
| ATGGTGCTATGGCTGTTGCG+GGG | 0.715398 | 5.2:-6413375 | MS.gene09921:CDS |
| GGTGATACCATAGATGACAG+AGG | 0.725756 | 5.2:-6413817 | MS.gene09921:CDS |
| GAAACCACGGTTGAATGTGG+TGG | 0.735030 | 5.2:+6413750 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATAAAACGTAATTAAA+GGG | + | chr5.2:6412987-6413006 | None:intergenic | 10.0% |
| !! | AATAAAACATAAAGTCAAAT+TGG | + | chr5.2:6411996-6412015 | None:intergenic | 15.0% |
| !! | ATTAATTAAATCAATGTCAA+TGG | + | chr5.2:6412376-6412395 | None:intergenic | 15.0% |
| !! | ATTTATAATTTGAATTCTAC+AGG | - | chr5.2:6412718-6412737 | MS.gene09921:CDS | 15.0% |
| !! | CATATACTTTAGTATAAAAA+AGG | + | chr5.2:6411763-6411782 | None:intergenic | 15.0% |
| !! | GTAATATAAAACGTAATTAA+AGG | + | chr5.2:6412988-6413007 | None:intergenic | 15.0% |
| !! | TTTATAATTTGAATTCTACA+GGG | - | chr5.2:6412719-6412738 | MS.gene09921:CDS | 15.0% |
| !!! | AATTTAGTTTTGTGAAAAAA+AGG | - | chr5.2:6412643-6412662 | MS.gene09921:intron | 15.0% |
| !!! | GAAATTTTGATTTTGTTTAT+TGG | - | chr5.2:6411509-6411528 | MS.gene09921:intron | 15.0% |
| !!! | GGAAATTTTTGTATTAAATA+GGG | - | chr5.2:6412121-6412140 | MS.gene09921:intron | 15.0% |
| !! | AAAATGAATATTTGCTTTGT+TGG | - | chr5.2:6411392-6411411 | MS.gene09921:intron | 20.0% |
| !! | ATATATATGTAATCTGATAC+AGG | + | chr5.2:6412522-6412541 | None:intergenic | 20.0% |
| !! | ATCAATTAGAACAGATATAA+TGG | + | chr5.2:6413381-6413400 | None:intergenic | 20.0% |
| !! | TAAATTATTAAGCTCAAGTA+TGG | + | chr5.2:6412703-6412722 | None:intergenic | 20.0% |
| !! | TAATGGGATATAATATTCAA+CGG | + | chr5.2:6413364-6413383 | None:intergenic | 20.0% |
| !! | TAATTTACAGTTTATACTGA+TGG | - | chr5.2:6412398-6412417 | MS.gene09921:intron | 20.0% |
| !! | TACTAAAGTATATGATGATA+AGG | - | chr5.2:6411769-6411788 | MS.gene09921:intron | 20.0% |
| !! | TATAAGAAAAAGTTACCTTT+AGG | + | chr5.2:6413158-6413177 | None:intergenic | 20.0% |
| !! | TCAATTAGAACAGATATAAT+GGG | + | chr5.2:6413380-6413399 | None:intergenic | 20.0% |
| !! | TTATAATTTGAATTCTACAG+GGG | - | chr5.2:6412720-6412739 | MS.gene09921:CDS | 20.0% |
| !! | TTCAGCAAAAATATACAAAA+GGG | + | chr5.2:6411373-6411392 | None:intergenic | 20.0% |
| !! | TTTCAGCAAAAATATACAAA+AGG | + | chr5.2:6411374-6411393 | None:intergenic | 20.0% |
| !!! | AAAATCAAAATTTCCCATTT+TGG | + | chr5.2:6411503-6411522 | None:intergenic | 20.0% |
| !!! | AATCTAACTTGTGATTTATA+CGG | - | chr5.2:6413026-6413045 | MS.gene09921:intron | 20.0% |
| !!! | ATGTTTTTCTTTTTCCAAAA+TGG | - | chr5.2:6411486-6411505 | MS.gene09921:intron | 20.0% |
| !!! | GAATTCAATTGTTATTTGTA+TGG | - | chr5.2:6411543-6411562 | MS.gene09921:intron | 20.0% |
| !!! | GATGAATTTTATATACTTCA+AGG | + | chr5.2:6413557-6413576 | None:intergenic | 20.0% |
| !!! | GGGAAATTTTTGTATTAAAT+AGG | - | chr5.2:6412120-6412139 | MS.gene09921:intron | 20.0% |
| !!! | TAATAAATTGCTTTGTTTCA+GGG | - | chr5.2:6411580-6411599 | MS.gene09921:intron | 20.0% |
| !!! | TGTTTTTCTTTTTCCAAAAT+GGG | - | chr5.2:6411487-6411506 | MS.gene09921:intron | 20.0% |
| !!! | TTAATAAATTGCTTTGTTTC+AGG | - | chr5.2:6411579-6411598 | MS.gene09921:intron | 20.0% |
| ! | AAATATGAATCTTGATTGTG+TGG | - | chr5.2:6412543-6412562 | MS.gene09921:CDS | 25.0% |
| ! | AATTTCATCAAAGGAAGAAA+AGG | - | chr5.2:6411076-6411095 | MS.gene09921:intron | 25.0% |
| ! | ATAAAAAGAAGAGCCATAAT+TGG | + | chr5.2:6411726-6411745 | None:intergenic | 25.0% |
| ! | ATATACTTTAGTAAAGTGAC+AGG | - | chr5.2:6413633-6413652 | MS.gene09921:intron | 25.0% |
| ! | ATCTCAACTTAACCAAAATA+TGG | + | chr5.2:6411840-6411859 | None:intergenic | 25.0% |
| ! | ATTTCATCAAAGGAAGAAAA+GGG | - | chr5.2:6411077-6411096 | MS.gene09921:intron | 25.0% |
| ! | TAATTAAACGCTTATAGCAT+AGG | + | chr5.2:6412050-6412069 | None:intergenic | 25.0% |
| ! | TACTTTAGGTACTAAATTGA+TGG | - | chr5.2:6413721-6413740 | MS.gene09921:CDS | 25.0% |
| ! | TAGCATGCGATATATTTATT+GGG | - | chr5.2:6412100-6412119 | MS.gene09921:intron | 25.0% |
| ! | TATAAAACGTAATTAAAGGG+AGG | + | chr5.2:6412984-6413003 | None:intergenic | 25.0% |
| ! | TATAATTTGAATTCTACAGG+GGG | - | chr5.2:6412721-6412740 | MS.gene09921:CDS | 25.0% |
| ! | TCAAATAAGTCAATCAAAAC+AGG | + | chr5.2:6411873-6411892 | None:intergenic | 25.0% |
| ! | TCATCAACATGGTTATTATT+AGG | - | chr5.2:6412198-6412217 | MS.gene09921:CDS | 25.0% |
| ! | TCTCAACTTAACCAAAATAT+GGG | + | chr5.2:6411839-6411858 | None:intergenic | 25.0% |
| ! | TGAGAAGAAAAAATGTAAAG+CGG | + | chr5.2:6413183-6413202 | None:intergenic | 25.0% |
| ! | TTAGCATGCGATATATTTAT+TGG | - | chr5.2:6412099-6412118 | MS.gene09921:intron | 25.0% |
| ! | TTTATCAAATTACCTGCAAA+GGG | + | chr5.2:6412309-6412328 | None:intergenic | 25.0% |
| !! | TGCTAGCTTAATAATCTTAA+TGG | - | chr5.2:6412673-6412692 | MS.gene09921:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | - | chr5.2:6412067-6412086 | MS.gene09921:intron | 25.0% |
| !! | TTTTATCAAATTACCTGCAA+AGG | + | chr5.2:6412310-6412329 | None:intergenic | 25.0% |
| !! | TTTTCTTTCTTGTGTTAGAA+GGG | - | chr5.2:6412831-6412850 | MS.gene09921:intron | 25.0% |
| !!! | AGTTTTATATGTTCGATTAC+TGG | - | chr5.2:6411630-6411649 | MS.gene09921:intron | 25.0% |
| !!! | GAACTTTTTGGAATCAATTT+TGG | - | chr5.2:6411335-6411354 | MS.gene09921:intron | 25.0% |
| !!! | TTAGTTTTGTGAAAAAAAGG+AGG | - | chr5.2:6412646-6412665 | MS.gene09921:intron | 25.0% |
| !!! | TTGTAGCTTTTTAGCTAATT+GGG | - | chr5.2:6411435-6411454 | MS.gene09921:intron | 25.0% |
| !!! | TTTGTAGCTTTTTAGCTAAT+TGG | - | chr5.2:6411434-6411453 | MS.gene09921:intron | 25.0% |
| AAACCAAAAATAAGTGGATC+AGG | + | chr5.2:6413886-6413905 | None:intergenic | 30.0% | |
| AATCTTATACAAGATGTTCG+AGG | - | chr5.2:6412773-6412792 | MS.gene09921:intron | 30.0% | |
| AGCTATGTGAATTTCATCAA+AGG | - | chr5.2:6411067-6411086 | MS.gene09921:CDS | 30.0% | |
| ATATCGCATGCTAAAGATTA+AGG | + | chr5.2:6412093-6412112 | None:intergenic | 30.0% | |
| CAATAGCATCTAATGATAGA+TGG | + | chr5.2:6411677-6411696 | None:intergenic | 30.0% | |
| CATTAGATGCTATTGTTCAA+GGG | - | chr5.2:6411682-6411701 | MS.gene09921:CDS | 30.0% | |
| CTAATGACTGTTATGTCAAA+AGG | + | chr5.2:6412886-6412905 | None:intergenic | 30.0% | |
| CTAATTGGGTCAAACAAAAA+AGG | - | chr5.2:6411449-6411468 | MS.gene09921:intron | 30.0% | |
| CTTCTAACACAAGAAAGAAA+AGG | + | chr5.2:6412832-6412851 | None:intergenic | 30.0% | |
| GAGAAGAAAAAATGTAAAGC+GGG | + | chr5.2:6413182-6413201 | None:intergenic | 30.0% | |
| GATTTGAAAAAGCTGTTTGA+AGG | - | chr5.2:6413320-6413339 | MS.gene09921:CDS | 30.0% | |
| GGGACAAATCAAATATATGA+CGG | - | chr5.2:6413604-6413623 | MS.gene09921:intron | 30.0% | |
| GGTTTATTCAATAGTTTCTC+AGG | - | chr5.2:6413742-6413761 | MS.gene09921:CDS | 30.0% | |
| GTTATTTGTATGGTGCAATT+TGG | - | chr5.2:6411553-6411572 | MS.gene09921:intron | 30.0% | |
| TAAGAGATCTCTCACTTTAA+CGG | - | chr5.2:6412480-6412499 | MS.gene09921:intron | 30.0% | |
| TATATGTAATCTGATACAGG+TGG | + | chr5.2:6412519-6412538 | None:intergenic | 30.0% | |
| TCATTAGATGCTATTGTTCA+AGG | - | chr5.2:6411681-6411700 | MS.gene09921:CDS | 30.0% | |
| TCCCTAACATCTTAATAGTA+GGG | + | chr5.2:6413588-6413607 | None:intergenic | 30.0% | |
| TCCCTACTATTAAGATGTTA+GGG | - | chr5.2:6413584-6413603 | MS.gene09921:intron | 30.0% | |
| TGGGTTAAAATCTTCATCAA+GGG | - | chr5.2:6413416-6413435 | MS.gene09921:intron | 30.0% | |
| TTATCAAATTACCTGCAAAG+GGG | + | chr5.2:6412308-6412327 | None:intergenic | 30.0% | |
| TTGATGAAAGCTCAATTCAT+GGG | + | chr5.2:6412185-6412204 | None:intergenic | 30.0% | |
| ! | ATATACTTTAGGGACCAAAT+TGG | + | chr5.2:6413518-6413537 | None:intergenic | 30.0% |
| ! | CTTTTCTTTCTTGTGTTAGA+AGG | - | chr5.2:6412830-6412849 | MS.gene09921:intron | 30.0% |
| ! | TTGATAAAACTTGCTTGCTT+TGG | - | chr5.2:6412321-6412340 | MS.gene09921:intron | 30.0% |
| ! | TTTCGTTCAATCCCATATTT+TGG | - | chr5.2:6411825-6411844 | MS.gene09921:intron | 30.0% |
| !! | TAACAGTCATTAGTTCTAGT+CGG | - | chr5.2:6412893-6412912 | MS.gene09921:intron | 30.0% |
| !!! | GAACTATGGAGTTTTTTCTA+TGG | - | chr5.2:6412277-6412296 | MS.gene09921:intron | 30.0% |
| AAAAATCTATTCCCCACTTC+TGG | - | chr5.2:6413935-6413954 | MS.gene09921:CDS | 35.0% | |
| AAAAGAAGAGCCATAATTGG+AGG | + | chr5.2:6411723-6411742 | None:intergenic | 35.0% | |
| AACCTATCCAATAGAGCTTA+CGG | + | chr5.2:6411945-6411964 | None:intergenic | 35.0% | |
| AAGAGATCTCTCACTTTAAC+GGG | - | chr5.2:6412481-6412500 | MS.gene09921:intron | 35.0% | |
| AAGCTCTATTGGATAGGTTA+TGG | - | chr5.2:6411946-6411965 | MS.gene09921:intron | 35.0% | |
| ACAGGTGCAACAATATAAGT+AGG | + | chr5.2:6413275-6413294 | None:intergenic | 35.0% | |
| ATATGCAGTTCCTCCAATTA+TGG | - | chr5.2:6411710-6411729 | MS.gene09921:CDS | 35.0% | |
| ATGTAGAGGATGAAGAACTA+TGG | - | chr5.2:6412263-6412282 | MS.gene09921:intron | 35.0% | |
| CATAATAGAGAGAACCAGTA+AGG | + | chr5.2:6413124-6413143 | None:intergenic | 35.0% | |
| CATTCGAAAACGATGAAACA+TGG | + | chr5.2:6413807-6413826 | None:intergenic | 35.0% | |
| CTAAAGATTAAGGCCATGTT+TGG | + | chr5.2:6412083-6412102 | None:intergenic | 35.0% | |
| CTTATTTCCGTAAGCTCTAT+TGG | - | chr5.2:6411935-6411954 | MS.gene09921:intron | 35.0% | |
| GAATTGAGCTTTCATCAACA+TGG | - | chr5.2:6412187-6412206 | MS.gene09921:intron | 35.0% | |
| GATGGTAATCATTAATCAGC+TGG | + | chr5.2:6413233-6413252 | None:intergenic | 35.0% | |
| GGGATATAATATTCAACGGT+AGG | + | chr5.2:6413360-6413379 | None:intergenic | 35.0% | |
| GTCCCTAACATCTTAATAGT+AGG | + | chr5.2:6413589-6413608 | None:intergenic | 35.0% | |
| GTCCCTACTATTAAGATGTT+AGG | - | chr5.2:6413583-6413602 | MS.gene09921:intron | 35.0% | |
| GTGACGGTTCAGAAATAAAA+AGG | - | chr5.2:6413826-6413845 | MS.gene09921:CDS | 35.0% | |
| TATACAAGATGTTCGAGGAA+TGG | - | chr5.2:6412778-6412797 | MS.gene09921:intron | 35.0% | |
| TATACGGTAATATGCAGACA+GGG | - | chr5.2:6413042-6413061 | MS.gene09921:intron | 35.0% | |
| TCAATGGTTGCACTAGATTA+AGG | + | chr5.2:6412360-6412379 | None:intergenic | 35.0% | |
| TCTGAAAGAGAGAAAAGAGA+TGG | + | chr5.2:6413251-6413270 | None:intergenic | 35.0% | |
| TGAAGAGAGATCGATACTTT+AGG | - | chr5.2:6413707-6413726 | MS.gene09921:CDS | 35.0% | |
| TGCTGCAAACCAAAAATAAG+TGG | + | chr5.2:6413892-6413911 | None:intergenic | 35.0% | |
| TTATACGGTAATATGCAGAC+AGG | - | chr5.2:6413041-6413060 | MS.gene09921:intron | 35.0% | |
| TTCATCCTCTACATCTCTAA+TGG | + | chr5.2:6412257-6412276 | None:intergenic | 35.0% | |
| TTTCCTGTTTGGGAAAAGAT+TGG | - | chr5.2:6411279-6411298 | MS.gene09921:intron | 35.0% | |
| ! | ATTACTGGAATTGACTCTCT+TGG | - | chr5.2:6411645-6411664 | MS.gene09921:intron | 35.0% |
| ! | GAAAAAGTTACCTTTAGGAG+AGG | + | chr5.2:6413153-6413172 | None:intergenic | 35.0% |
| ! | GTGGGTTAAAATCTTCATCA+AGG | - | chr5.2:6413415-6413434 | MS.gene09921:intron | 35.0% |
| ! | GTTGATGAAAGCTCAATTCA+TGG | + | chr5.2:6412186-6412205 | None:intergenic | 35.0% |
| ! | TGATAACGTTCTAGTCAAGT+GGG | - | chr5.2:6413397-6413416 | MS.gene09921:intron | 35.0% |
| ! | TTACTGGAATTGACTCTCTT+GGG | - | chr5.2:6411646-6411665 | MS.gene09921:intron | 35.0% |
| ! | TTCATCGTTTTCGAATGTGA+CGG | - | chr5.2:6413810-6413829 | MS.gene09921:CDS | 35.0% |
| !! | ACACAGAAAGTACTCATGAT+TGG | + | chr5.2:6412591-6412610 | None:intergenic | 35.0% |
| !! | CAACCTGATCCACTTATTTT+TGG | - | chr5.2:6413880-6413899 | MS.gene09921:CDS | 35.0% |
| !! | CTGGCTGATATATTTTTACG+AGG | - | chr5.2:6412746-6412765 | MS.gene09921:CDS | 35.0% |
| !! | CTTCAAGAGTTGTTTCTGTT+CGG | - | chr5.2:6411115-6411134 | MS.gene09921:intron | 35.0% |
| !! | GGTTAAGTTGAGATGCATTT+AGG | - | chr5.2:6411846-6411865 | MS.gene09921:CDS | 35.0% |
| !! | TACTGGTTCTCTCTATTATG+TGG | - | chr5.2:6413124-6413143 | MS.gene09921:intron | 35.0% |
| !! | TGCTTTGTTTCAGGGATTTA+TGG | - | chr5.2:6411588-6411607 | MS.gene09921:intron | 35.0% |
| !! | TTGATAACGTTCTAGTCAAG+TGG | - | chr5.2:6413396-6413415 | MS.gene09921:intron | 35.0% |
| !! | TTGGTGTTAGTGTTAGAGAA+AGG | + | chr5.2:6411014-6411033 | None:intergenic | 35.0% |
| !!! | CTTATTTTTGGTTTGCAGCA+TGG | - | chr5.2:6413892-6413911 | MS.gene09921:CDS | 35.0% |
| AATCAGCTGGAGAACAAACT+AGG | + | chr5.2:6413220-6413239 | None:intergenic | 40.0% | |
| ACCATTTGTTCCATTTGCTC+AGG | - | chr5.2:6413073-6413092 | MS.gene09921:intron | 40.0% | |
| AGCTCAATTCATGGGAACAA+AGG | + | chr5.2:6412177-6412196 | None:intergenic | 40.0% | |
| AGTGAAGTTGAAGAAGGGTT+TGG | + | chr5.2:6411033-6411052 | None:intergenic | 40.0% | |
| ATACGGTAATATGCAGACAG+GGG | - | chr5.2:6413043-6413062 | MS.gene09921:intron | 40.0% | |
| ATCACAAGCAGAAAATGCAC+AGG | + | chr5.2:6413856-6413875 | None:intergenic | 40.0% | |
| ATTGAAACCACGGTTGAATG+TGG | + | chr5.2:6411238-6411257 | None:intergenic | 40.0% | |
| CAGTATCACTCTCTCCAATT+TGG | - | chr5.2:6413501-6413520 | MS.gene09921:intron | 40.0% | |
| CTAGCACGAGATTGTAAAAC+AGG | + | chr5.2:6413293-6413312 | None:intergenic | 40.0% | |
| CTTACCCTCTTTAATGTCCT+TGG | - | chr5.2:6412958-6412977 | MS.gene09921:intron | 40.0% | |
| GAGAGAGTGAAGTTGAAGAA+GGG | + | chr5.2:6411038-6411057 | None:intergenic | 40.0% | |
| GTTAGACTCAGCTATGGAAT+CGG | - | chr5.2:6411309-6411328 | MS.gene09921:intron | 40.0% | |
| TGAGAGAGTGAAGTTGAAGA+AGG | + | chr5.2:6411039-6411058 | None:intergenic | 40.0% | |
| TGAGCAAATGGAACAAATGG+TGG | + | chr5.2:6413074-6413093 | None:intergenic | 40.0% | |
| TTCCGTAAGCTCTATTGGAT+AGG | - | chr5.2:6411940-6411959 | MS.gene09921:intron | 40.0% | |
| TTGCAGCATGGTATGAGAAA+AGG | - | chr5.2:6413904-6413923 | MS.gene09921:CDS | 40.0% | |
| TTGGAGAGAGTGATACTGTA+TGG | + | chr5.2:6413499-6413518 | None:intergenic | 40.0% | |
| ! | TACTGGAATTGACTCTCTTG+GGG | - | chr5.2:6411647-6411666 | MS.gene09921:intron | 40.0% |
| ! | TGGAATCGGTGAGAACTTTT+TGG | - | chr5.2:6411323-6411342 | MS.gene09921:intron | 40.0% |
| ! | TTCAGGGATTTATGGTGCTA+TGG | - | chr5.2:6411596-6411615 | MS.gene09921:intron | 40.0% |
| !! | CAGAAAGTACTCATGATTGG+AGG | + | chr5.2:6412588-6412607 | None:intergenic | 40.0% |
| AAACAACCCTCTCGACTTTC+AGG | - | chr5.2:6412918-6412937 | MS.gene09921:intron | 45.0% | |
| AAAGCTTCTGCAGAGAGAAC+TGG | - | chr5.2:6411144-6411163 | MS.gene09921:intron | 45.0% | |
| AACAACCCTCTCGACTTTCA+GGG | - | chr5.2:6412919-6412938 | MS.gene09921:intron | 45.0% | |
| ACGTAATTAAAGGGAGGCCA+AGG | + | chr5.2:6412978-6412997 | None:intergenic | 45.0% | |
| ACTGATGGTTGCTGCAAGTT+CGG | - | chr5.2:6412413-6412432 | MS.gene09921:intron | 45.0% | |
| ATCTATTCCCCACTTCTGGA+AGG | - | chr5.2:6413939-6413958 | MS.gene09921:CDS | 45.0% | |
| CAATAGTCCTTCCAGAAGTG+GGG | + | chr5.2:6413949-6413968 | None:intergenic | 45.0% | |
| CAGCAGCATCATTGAAACCA+CGG | + | chr5.2:6411248-6411267 | None:intergenic | 45.0% | |
| CCAATAGTCCTTCCAGAAGT+GGG | + | chr5.2:6413950-6413969 | None:intergenic | 45.0% | |
| CCTCTACATCTCTAATGGCA+CGG | + | chr5.2:6412252-6412271 | None:intergenic | 45.0% | |
| CTCTACATCTCTAATGGCAC+GGG | + | chr5.2:6412251-6412270 | None:intergenic | 45.0% | |
| GAGGCCAAGGACATTAAAGA+GGG | + | chr5.2:6412965-6412984 | None:intergenic | 45.0% | |
| GATGCTATTGTTCAAGGGCT+TGG | - | chr5.2:6411687-6411706 | MS.gene09921:CDS | 45.0% | |
| GCAACCTTACTATTGCACCA+AGG | + | chr5.2:6412861-6412880 | None:intergenic | 45.0% | |
| GCCTGAGCAAATGGAACAAA+TGG | + | chr5.2:6413077-6413096 | None:intergenic | 45.0% | |
| GCTGTTGTTAGACTCAGCTA+TGG | - | chr5.2:6411303-6411322 | MS.gene09921:intron | 45.0% | |
| GGTGATACCATAGATGACAG+AGG | - | chr5.2:6411165-6411184 | MS.gene09921:intron | 45.0% | |
| GTACTTACAGCTGTCCTTAC+TGG | - | chr5.2:6413107-6413126 | MS.gene09921:intron | 45.0% | |
| TGTCTCACCTCTGTCATCTA+TGG | + | chr5.2:6411175-6411194 | None:intergenic | 45.0% | |
| ! | ACTGGAATTGACTCTCTTGG+GGG | - | chr5.2:6411648-6411667 | MS.gene09921:intron | 45.0% |
| ! | GCACCAATCTTTTCCCAAAC+AGG | + | chr5.2:6411285-6411304 | None:intergenic | 45.0% |
| ! | TGAGCCTTGGTGCAATAGTA+AGG | - | chr5.2:6412854-6412873 | MS.gene09921:intron | 45.0% |
| !! | TGCTGCTGACTTTCCTGTTT+GGG | - | chr5.2:6411269-6411288 | MS.gene09921:intron | 45.0% |
| !! | TTATGGTGCTATGGCTGTTG+CGG | - | chr5.2:6411605-6411624 | MS.gene09921:intron | 45.0% |
| !! | TATTATATTTATATACTTTA+GGG | + | chr5.2:6413528-6413547 | None:intergenic | 5.0% |
| !! | TTATTATATTTATATACTTT+AGG | + | chr5.2:6413529-6413548 | None:intergenic | 5.0% |
| ACAGAGGTGAGACAAGAACC+GGG | - | chr5.2:6411181-6411200 | MS.gene09921:intron | 50.0% | |
| ATCTCTAATGGCACGGGCAT+AGG | + | chr5.2:6412245-6412264 | None:intergenic | 50.0% | |
| ATGGTTGCTGCAAGTTCGGT+GGG | - | chr5.2:6412417-6412436 | MS.gene09921:intron | 50.0% | |
| CGTGGTTTCAATGATGCTGC+TGG | - | chr5.2:6411246-6411265 | MS.gene09921:intron | 50.0% | |
| CTTAGCCCTGAAAGTCGAGA+GGG | + | chr5.2:6412927-6412946 | None:intergenic | 50.0% | |
| GAAACCACGGTTGAATGTGG+TGG | + | chr5.2:6411235-6411254 | None:intergenic | 50.0% | |
| GACAGAGGTGAGACAAGAAC+CGG | - | chr5.2:6411180-6411199 | MS.gene09921:intron | 50.0% | |
| GCCAATAGTCCTTCCAGAAG+TGG | + | chr5.2:6413951-6413970 | None:intergenic | 50.0% | |
| GGAGGCCAAGGACATTAAAG+AGG | + | chr5.2:6412966-6412985 | None:intergenic | 50.0% | |
| GTTCACTACACCTGCAGCTA+TGG | - | chr5.2:6411203-6411222 | MS.gene09921:intron | 50.0% | |
| TATGTGGCTGCCTCTCCTAA+AGG | - | chr5.2:6413140-6413159 | MS.gene09921:intron | 50.0% | |
| TCTCTAATGGCACGGGCATA+GGG | + | chr5.2:6412244-6412263 | None:intergenic | 50.0% | |
| TGTGTTAGAAGGGTGAGCCT+TGG | - | chr5.2:6412841-6412860 | MS.gene09921:intron | 50.0% | |
| TGTTCGAGGAATGGCGTCTT+TGG | - | chr5.2:6412787-6412806 | MS.gene09921:intron | 50.0% | |
| ! | CCCACTTCTGGAAGGACTAT+TGG | - | chr5.2:6413947-6413966 | MS.gene09921:CDS | 50.0% |
| ! | CCGTGCCATTAGAGATGTAG+AGG | - | chr5.2:6412249-6412268 | MS.gene09921:intron | 50.0% |
| ! | TTGAATTCTACAGGGGGCAC+TGG | - | chr5.2:6412727-6412746 | MS.gene09921:CDS | 50.0% |
| !! | GGACTATTGGCTCTCTACCT+CGG | - | chr5.2:6413960-6413979 | MS.gene09921:CDS | 50.0% |
| !! | GTGCTGCTGACTTTCCTGTT+TGG | - | chr5.2:6411268-6411287 | MS.gene09921:intron | 50.0% |
| !! | TATGGTGCTATGGCTGTTGC+GGG | - | chr5.2:6411606-6411625 | MS.gene09921:intron | 50.0% |
| !!! | CTCTCTACCTCGGTTTTGAG+TGG | - | chr5.2:6413970-6413989 | MS.gene09921:CDS | 50.0% |
| AGCTGCAGGTGTAGTGAACC+CGG | + | chr5.2:6411202-6411221 | None:intergenic | 55.0% | |
| CCTCTCGACTTTCAGGGCTA+AGG | - | chr5.2:6412925-6412944 | MS.gene09921:intron | 55.0% | |
| CCTTAGCCCTGAAAGTCGAG+AGG | + | chr5.2:6412928-6412947 | None:intergenic | 55.0% | |
| CTATGGCATGTCCCCTTTGC+AGG | - | chr5.2:6412294-6412313 | MS.gene09921:intron | 55.0% | |
| CTTCTACAGGGCTGCAGTTC+AGG | - | chr5.2:6412449-6412468 | MS.gene09921:intron | 55.0% | |
| GATGGTTGCTGCAAGTTCGG+TGG | - | chr5.2:6412416-6412435 | MS.gene09921:intron | 55.0% | |
| GCTGCAAGTGCCTGAGCAAA+TGG | + | chr5.2:6413086-6413105 | None:intergenic | 55.0% | |
| GGGAGAGGAGCTCTTCTACA+GGG | - | chr5.2:6412437-6412456 | MS.gene09921:intron | 55.0% | |
| GTCACCACCACATTCAACCG+TGG | - | chr5.2:6411228-6411247 | MS.gene09921:intron | 55.0% | |
| GTGGTGACTTCCATAGCTGC+AGG | + | chr5.2:6411216-6411235 | None:intergenic | 55.0% | |
| TGGGAGAGGAGCTCTTCTAC+AGG | - | chr5.2:6412436-6412455 | MS.gene09921:intron | 55.0% | |
| !! | ATGGTGCTATGGCTGTTGCG+GGG | - | chr5.2:6411607-6411626 | MS.gene09921:intron | 55.0% |
| ! | TGCTGCAAGTTCGGTGGGAG+AGG | - | chr5.2:6412422-6412441 | MS.gene09921:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 6411006 | 6413998 | 6411006 | ID=MS.gene09921 |
| chr5.2 | mRNA | 6411006 | 6413998 | 6411006 | ID=MS.gene09921.t1;Parent=MS.gene09921 |
| chr5.2 | exon | 6413674 | 6413998 | 6413674 | ID=MS.gene09921.t1.exon1;Parent=MS.gene09921.t1 |
| chr5.2 | CDS | 6413674 | 6413998 | 6413674 | ID=cds.MS.gene09921.t1;Parent=MS.gene09921.t1 |
| chr5.2 | exon | 6413252 | 6413403 | 6413252 | ID=MS.gene09921.t1.exon2;Parent=MS.gene09921.t1 |
| chr5.2 | CDS | 6413252 | 6413403 | 6413252 | ID=cds.MS.gene09921.t1;Parent=MS.gene09921.t1 |
| chr5.2 | exon | 6412689 | 6412784 | 6412689 | ID=MS.gene09921.t1.exon3;Parent=MS.gene09921.t1 |
| chr5.2 | CDS | 6412689 | 6412784 | 6412689 | ID=cds.MS.gene09921.t1;Parent=MS.gene09921.t1 |
| chr5.2 | exon | 6412534 | 6412596 | 6412534 | ID=MS.gene09921.t1.exon4;Parent=MS.gene09921.t1 |
| chr5.2 | CDS | 6412534 | 6412596 | 6412534 | ID=cds.MS.gene09921.t1;Parent=MS.gene09921.t1 |
| chr5.2 | exon | 6412196 | 6412264 | 6412196 | ID=MS.gene09921.t1.exon5;Parent=MS.gene09921.t1 |
| chr5.2 | CDS | 6412196 | 6412264 | 6412196 | ID=cds.MS.gene09921.t1;Parent=MS.gene09921.t1 |
| chr5.2 | exon | 6411843 | 6411945 | 6411843 | ID=MS.gene09921.t1.exon6;Parent=MS.gene09921.t1 |
| chr5.2 | CDS | 6411843 | 6411945 | 6411843 | ID=cds.MS.gene09921.t1;Parent=MS.gene09921.t1 |
| chr5.2 | exon | 6411663 | 6411734 | 6411663 | ID=MS.gene09921.t1.exon7;Parent=MS.gene09921.t1 |
| chr5.2 | CDS | 6411663 | 6411734 | 6411663 | ID=cds.MS.gene09921.t1;Parent=MS.gene09921.t1 |
| chr5.2 | exon | 6411006 | 6411094 | 6411006 | ID=MS.gene09921.t1.exon8;Parent=MS.gene09921.t1 |
| chr5.2 | CDS | 6411006 | 6411094 | 6411006 | ID=cds.MS.gene09921.t1;Parent=MS.gene09921.t1 |
| Gene Sequence |
| Protein sequence |
