AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04939


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04939.t1 MTR_3g066060 98.485 264 4 0 1 264 1 264 0.0 530
MS.gene04939.t1 MTR_1g115500 59.524 210 85 0 55 264 3 212 5.75e-93 273
MS.gene04939.t1 MTR_1g067180 27.363 201 127 7 72 259 33 227 1.84e-14 71.2
MS.gene04939.t1 MTR_1g067180 27.363 201 127 7 72 259 36 230 2.34e-14 70.9
MS.gene04939.t1 MTR_1g067150 25.510 196 118 6 72 263 31 202 2.29e-12 67.0
MS.gene04939.t1 MTR_7g100320 27.094 203 129 7 72 261 35 231 5.10e-12 64.3
MS.gene04939.t1 MTR_1g067170 26.943 193 116 6 72 261 33 203 2.78e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04939.t1 AT5G16710 68.235 255 71 3 20 264 4 258 1.63e-126 360
MS.gene04939.t1 AT1G75270 61.722 209 79 1 55 262 3 211 1.35e-95 280
MS.gene04939.t1 AT1G19570 58.373 209 86 1 55 262 3 211 9.46e-87 257
MS.gene04939.t1 AT1G19550 48.148 162 61 1 101 262 13 151 4.45e-46 152

Find 73 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAACACCCTTTGGCTAAA+AGG 0.227026 3.4:+67419952 None:intergenic
TTTCTTAAATCCACCAATTT+CGG 0.274589 3.4:+67419898 None:intergenic
TTTACCTTATGAGCCGAAAT+TGG 0.293942 3.4:-67419911 MS.gene04939:CDS
ATGTCTTTCCCATTGATAAA+AGG 0.296522 3.4:+67418414 None:intergenic
TGCTTGTTCTGTTCCGTCAT+TGG 0.311879 3.4:+67419001 None:intergenic
CAGAAGACATTAATACTCTA+AGG 0.322827 3.4:+67422117 None:intergenic
TTACAGTCTCCAATCTTGTT+AGG 0.323971 3.4:+67422044 None:intergenic
CTTTGGGACATTATAAGAAA+TGG 0.339739 3.4:-67418341 MS.gene04939:CDS
GGACAAGCAAATCACCATTC+TGG 0.348383 3.4:+67419871 None:intergenic
TATCATCAACCCTCTACTTT+AGG 0.351222 3.4:+67417492 None:intergenic
TTCCCGTCGAAGTTTATTAC+AGG 0.353177 3.4:+67419730 None:intergenic
TACCATTTGGAGATTGCTTT+GGG 0.358598 3.4:-67418357 MS.gene04939:CDS
GCTTGTTCTGTTCCGTCATT+GGG 0.376742 3.4:+67419002 None:intergenic
TGCTCCTCCTTCTGAGCCAT+TGG 0.379937 3.4:-67422096 MS.gene04939:CDS
CTTACCACTCCTAACAAGAT+TGG 0.386618 3.4:-67422053 MS.gene04939:CDS
TACCTTCAGGACTGATTTCA+AGG 0.389717 3.4:+67419758 None:intergenic
ATACCATTTGGAGATTGCTT+TGG 0.401508 3.4:-67418358 MS.gene04939:CDS
GGGGTCACCAATGGTGGGCT+AGG 0.413216 3.4:+67419658 None:intergenic
TCAGGTGGGGTCACCAATGG+TGG 0.418534 3.4:+67419652 None:intergenic
TCCACCAATTTCGGCTCATA+AGG 0.421633 3.4:+67419907 None:intergenic
TTCCTTGAGGTAATCGTTGA+AGG 0.431943 3.4:+67418959 None:intergenic
ATAGCTTTGGTCCTAGTGAT+AGG 0.433953 3.4:+67418379 None:intergenic
ATTGGTGACCCCACCTGAAA+AGG 0.441774 3.4:-67419647 MS.gene04939:CDS
ATCTCCAAATGGTATAGCTT+TGG 0.443085 3.4:+67418366 None:intergenic
TAATAAACTTCGACGGGAAG+TGG 0.443533 3.4:-67419726 MS.gene04939:CDS
AATACTGAAACCGTTGTTGA+AGG 0.447254 3.4:+67422145 None:intergenic
TCGGTAACGAAGGTGGTTAA+CGG 0.448814 3.4:+67422193 None:intergenic
AGGACCAAAGCTATACCATT+TGG 0.449238 3.4:-67418370 MS.gene04939:CDS
CCAGTGTCAGCAACACCCTT+TGG 0.465405 3.4:+67419944 None:intergenic
GCAACACCCTTTGGCTAAAA+GGG 0.469686 3.4:+67419953 None:intergenic
ATTACAGGAACTTTACCTTC+AGG 0.472085 3.4:+67419745 None:intergenic
CAGGTGGGGTCACCAATGGT+GGG 0.506564 3.4:+67419653 None:intergenic
CTAGTTGAAACGGCGTAGCT+TGG 0.507274 3.4:+67422170 None:intergenic
TTGAAACGGCGTAGCTTGGT+CGG 0.515114 3.4:+67422174 None:intergenic
ACCTTATGAGCCGAAATTGG+TGG 0.524221 3.4:-67419908 MS.gene04939:CDS
GTCCCAAAGCAATCTCCAAA+TGG 0.525825 3.4:+67418355 None:intergenic
CCAAAGGGTGTTGCTGACAC+TGG 0.528417 3.4:-67419944 MS.gene04939:CDS
CAGCCGGAGGATGTCATTGA+AGG 0.529861 3.4:-67417522 MS.gene04939:CDS
GCAACTTCCAATGGCTCAGA+AGG 0.530234 3.4:+67422089 None:intergenic
CTTCAAGTAAGACTTCAAAA+AGG 0.533977 3.4:+67418299 None:intergenic
AGATTTAATCACACAAACAT+TGG 0.534999 3.4:-67419692 MS.gene04939:CDS
TTCCTGTAATAAACTTCGAC+GGG 0.536777 3.4:-67419732 MS.gene04939:CDS
GCTTTAACAGCAACTTCCAA+TGG 0.538010 3.4:+67422080 None:intergenic
AGAAGACATTAATACTCTAA+GGG 0.541970 3.4:+67422118 None:intergenic
GTTGAAGGAGCTAGTTGAAA+CGG 0.542410 3.4:+67422160 None:intergenic
TGAATTCTAACGGTGGACAT+TGG 0.546517 3.4:+67422242 None:intergenic
CATTAACACACGTGCACAGC+CGG 0.557161 3.4:-67417538 MS.gene04939:CDS
GAAGTATCCTAGCCCACCAT+TGG 0.558980 3.4:-67419665 MS.gene04939:CDS
CAACCTTCAATGACATCCTC+CGG 0.565403 3.4:+67417519 None:intergenic
TTCCTTGAAATCAGTCCTGA+AGG 0.565919 3.4:-67419760 MS.gene04939:CDS
GTTCCTGTAATAAACTTCGA+CGG 0.569489 3.4:-67419733 MS.gene04939:CDS
TCAACTAGCTCCTTCAACAA+CGG 0.572004 3.4:-67422155 MS.gene04939:CDS
CGGAGGATGTCATTGAAGGT+TGG 0.572766 3.4:-67417518 MS.gene04939:CDS
TGCTGAAACTTGAATTCTAA+CGG 0.573659 3.4:+67422232 None:intergenic
GTCTCCAATCTTGTTAGGAG+TGG 0.575745 3.4:+67422049 None:intergenic
ACGAAGGTGGTTAACGGTGG+CGG 0.577042 3.4:+67422199 None:intergenic
AAAGGTCAGCGAATCAGGTA+CGG 0.599548 3.4:+67418317 None:intergenic
CTCCTTCAACGATTACCTCA+AGG 0.601777 3.4:-67418961 MS.gene04939:CDS
ACTTCCAATGGCTCAGAAGG+AGG 0.604566 3.4:+67422092 None:intergenic
AATAAACTTCGACGGGAAGT+GGG 0.608951 3.4:-67419725 MS.gene04939:CDS
ATTTAAGAAACAAACCAGAA+TGG 0.617097 3.4:-67419885 MS.gene04939:intron
AGCTTGGTCGGTAACGAAGG+TGG 0.617242 3.4:+67422186 None:intergenic
AGGTTGGCGTCCTAAAGTAG+AGG 0.619348 3.4:-67417502 MS.gene04939:CDS
GAAGACATTAATACTCTAAG+GGG 0.621045 3.4:+67422119 None:intergenic
AAAAGCAAAGATCCCAATGA+CGG 0.633633 3.4:-67419014 MS.gene04939:CDS
CGTAGCTTGGTCGGTAACGA+AGG 0.633889 3.4:+67422183 None:intergenic
GGTTGGCGTCCTAAAGTAGA+GGG 0.649275 3.4:-67417501 MS.gene04939:CDS
AAGGGTGTTGCTGACACTGG+AGG 0.656952 3.4:-67419941 MS.gene04939:CDS
TCTGCGGCTGACCTATCACT+AGG 0.671764 3.4:-67418390 MS.gene04939:CDS
TAACACACGTGCACAGCCGG+AGG 0.694276 3.4:-67417535 MS.gene04939:CDS
CAATGGGAAAGACATATCTG+CGG 0.711997 3.4:-67418406 MS.gene04939:CDS
GTAACGAAGGTGGTTAACGG+TGG 0.728437 3.4:+67422196 None:intergenic
TGAAACTTGAATTCTAACGG+TGG 0.756125 3.4:+67422235 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGATTTTAATACATTA+GGG - chr3.4:67420536-67420555 MS.gene04939:intron 10.0%
!!! TTTTTTGATTTTAATACATT+AGG - chr3.4:67420535-67420554 MS.gene04939:intron 10.0%
!!! TTTTTTTTTTGAAAAATACA+TGG - chr3.4:67420204-67420223 MS.gene04939:intron 10.0%
!! ACAAAAATATAAGGAAAAAA+GGG + chr3.4:67420812-67420831 None:intergenic 15.0%
!! AGATGTTACAAAATATTAAA+CGG - chr3.4:67420988-67421007 MS.gene04939:intron 15.0%
!! ATATAAACAAAAATCTTCTT+TGG + chr3.4:67419119-67419138 None:intergenic 15.0%
!! CAACAAAAAAAATTATTACA+AGG + chr3.4:67419949-67419968 None:intergenic 15.0%
!! TTATAATTTGGATATATTCA+AGG + chr3.4:67420376-67420395 None:intergenic 15.0%
!! TTCTATTTATATAACTTTGA+GGG - chr3.4:67421200-67421219 MS.gene04939:intron 15.0%
!! TTGTAAAGTTTATGAATAAT+TGG - chr3.4:67421086-67421105 MS.gene04939:intron 15.0%
!!! ATTTTTGTTTATATTTGTAG+AGG - chr3.4:67419125-67419144 MS.gene04939:intron 15.0%
!!! CTTGTAATAATTTTTTTTGT+TGG - chr3.4:67419947-67419966 MS.gene04939:CDS 15.0%
!!! TTATATAAATAGAAGTGTTT+TGG + chr3.4:67421194-67421213 None:intergenic 15.0%
!! AAAGTTCAAAATTGCAAAAA+CGG + chr3.4:67421797-67421816 None:intergenic 20.0%
!! AAATAACTAAAACCATGAAA+AGG + chr3.4:67417728-67417747 None:intergenic 20.0%
!! AAATCAAAGAACAAAGATAA+AGG + chr3.4:67419547-67419566 None:intergenic 20.0%
!! AAGTAAATACAAGAATAAAG+AGG + chr3.4:67420610-67420629 None:intergenic 20.0%
!! AATAACTAAAACCATGAAAA+GGG + chr3.4:67417727-67417746 None:intergenic 20.0%
!! AATTACATTAAATTATGTCG+AGG - chr3.4:67417932-67417951 MS.gene04939:intron 20.0%
!! AGTGAAAATGATTTATCAAT+AGG - chr3.4:67421656-67421675 MS.gene04939:intron 20.0%
!! ATGTTACAAAATATTAAACG+GGG - chr3.4:67420990-67421009 MS.gene04939:intron 20.0%
!! CAAATAGTTTACAAAATTTG+CGG - chr3.4:67421587-67421606 MS.gene04939:intron 20.0%
!! CATTGAATACTTAATGTATT+TGG + chr3.4:67418458-67418477 None:intergenic 20.0%
!! CTTCTATTTATATAACTTTG+AGG - chr3.4:67421199-67421218 MS.gene04939:intron 20.0%
!! GACAAAAATATAAGGAAAAA+AGG + chr3.4:67420813-67420832 None:intergenic 20.0%
!! GATGTTACAAAATATTAAAC+GGG - chr3.4:67420989-67421008 MS.gene04939:intron 20.0%
!! GGTTAAAAAATTTATACGAA+AGG + chr3.4:67421275-67421294 None:intergenic 20.0%
!! GTGAAAATGATTTATCAATA+GGG - chr3.4:67421657-67421676 MS.gene04939:intron 20.0%
!! TATAATAGACCAAATACATT+AGG + chr3.4:67418431-67418450 None:intergenic 20.0%
!! TATACTACTTAAGTGAATTA+AGG - chr3.4:67418333-67418352 MS.gene04939:CDS 20.0%
!! TCTTTATTCTTGTATTTACT+TGG - chr3.4:67420609-67420628 MS.gene04939:intron 20.0%
!! TTCATGGATGATTTATAATT+TGG + chr3.4:67420388-67420407 None:intergenic 20.0%
!!! AAGATCTTTTCTACATTTAT+TGG - chr3.4:67420692-67420711 MS.gene04939:intron 20.0%
!!! AATTTTATATACCCTTATGA+TGG - chr3.4:67418141-67418160 MS.gene04939:intron 20.0%
!!! ATAATTTTTTTTGTTGGTTC+AGG - chr3.4:67419953-67419972 MS.gene04939:CDS 20.0%
!!! CATAAGTTTTGAAAATGTTT+AGG - chr3.4:67418003-67418022 MS.gene04939:intron 20.0%
!!! CATTATTTTTCGTTTACATT+CGG + chr3.4:67421969-67421988 None:intergenic 20.0%
!!! CTATAAACTTTCAGTATTTT+AGG - chr3.4:67420856-67420875 MS.gene04939:intron 20.0%
!!! TAAGCAAAAAACTACATTTT+AGG - chr3.4:67418394-67418413 MS.gene04939:CDS 20.0%
!!! TTTATTTTTGCTTTAGTTCA+TGG - chr3.4:67419011-67419030 MS.gene04939:CDS 20.0%
!!! TTTGTTCTTTGATTTAATTG+TGG - chr3.4:67419552-67419571 MS.gene04939:intron 20.0%
!!! TTTTGATTAATTGTGTCATA+CGG + chr3.4:67420575-67420594 None:intergenic 20.0%
! AAACAAAGGAAATTTCATCA+AGG + chr3.4:67422115-67422134 None:intergenic 25.0%
! AAGTTCAAAATTGCAAAAAC+GGG + chr3.4:67421796-67421815 None:intergenic 25.0%
! AATTCACTTAAGTAGTATAC+AGG + chr3.4:67418332-67418351 None:intergenic 25.0%
! ACACTACAAGAAAAGTTATA+GGG + chr3.4:67420934-67420953 None:intergenic 25.0%
! ACATCTTATGTATATACAAG+AGG + chr3.4:67420974-67420993 None:intergenic 25.0%
! ACTAAGGAAAAATACATTCA+TGG + chr3.4:67420404-67420423 None:intergenic 25.0%
! AGAAGACATTAATACTCTAA+GGG + chr3.4:67417621-67417640 None:intergenic 25.0%
! AGATTTAATCACACAAACAT+TGG - chr3.4:67420044-67420063 MS.gene04939:intron 25.0%
! AGGAAAAAACAGATTTACAA+AGG + chr3.4:67421744-67421763 None:intergenic 25.0%
! AGTTATGAATTATTAGAGGA+AGG - chr3.4:67419365-67419384 MS.gene04939:intron 25.0%
! ATGAAACTGCATCATAAATA+CGG + chr3.4:67421562-67421581 None:intergenic 25.0%
! ATTACATATGAGACAAGTAA+CGG + chr3.4:67422089-67422108 None:intergenic 25.0%
! ATTTAAGAAACAAACCAGAA+TGG - chr3.4:67419851-67419870 MS.gene04939:intron 25.0%
! GAAATTCAAATCACAAACAA+TGG - chr3.4:67418235-67418254 MS.gene04939:intron 25.0%
! GCAAACTGTAAAATAAACAA+AGG + chr3.4:67422129-67422148 None:intergenic 25.0%
! TAATAATTCATAACTACCCA+AGG + chr3.4:67419360-67419379 None:intergenic 25.0%
! TCTAATAATGTTGAACTTAC+AGG - chr3.4:67422153-67422172 MS.gene04939:CDS 25.0%
! TGAAAAGAAAAAATTTGCAC+AGG + chr3.4:67421296-67421315 None:intergenic 25.0%
! TGAATAGACAATTCAACAAA+GGG + chr3.4:67419761-67419780 None:intergenic 25.0%
! TTAGTATTATATACTACCTC+CGG + chr3.4:67418515-67418534 None:intergenic 25.0%
! TTATACATTTCCTCATCATT+TGG - chr3.4:67420132-67420151 MS.gene04939:intron 25.0%
! TTTCCTTCATATATTCAAAG+AGG - chr3.4:67421758-67421777 MS.gene04939:intron 25.0%
! TTTCTTAAATCCACCAATTT+CGG + chr3.4:67419841-67419860 None:intergenic 25.0%
!! AAAAATTCTTACCCTTTTCA+TGG - chr3.4:67417713-67417732 MS.gene04939:intron 25.0%
!! AAAGTTTTTGTAATGTGCTT+TGG - chr3.4:67421718-67421737 MS.gene04939:intron 25.0%
!! ATTAGTATTTGAGACATTGA+TGG - chr3.4:67417797-67417816 MS.gene04939:intron 25.0%
!! GTATTTTTCCTTAGTCAATT+TGG - chr3.4:67420409-67420428 MS.gene04939:intron 25.0%
!! TCTAAAATTTAGCTAGTAAC+TGG + chr3.4:67418868-67418887 None:intergenic 25.0%
!! TTCTTTTGTTAGCAATTTCA+TGG + chr3.4:67420501-67420520 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr3.4:67418493-67418512 MS.gene04939:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+TGG + chr3.4:67418512-67418493 None:intergenic 25.0%
!!! GCAAATTTTTTCTTTTCACA+GGG - chr3.4:67421298-67421317 MS.gene04939:intron 25.0%
!!! TGCAAATTTTTTCTTTTCAC+AGG - chr3.4:67421297-67421316 MS.gene04939:intron 25.0%
!!! TTGAGCTTGTTTTTTTGTAT+TGG - chr3.4:67417754-67417773 MS.gene04939:intron 25.0%
!!! TTTTCCTTATATTTTTGTCC+CGG - chr3.4:67420814-67420833 MS.gene04939:intron 25.0%
AAAAAGGAGTCCTAGTAATT+CGG + chr3.4:67418809-67418828 None:intergenic 30.0%
AAATGATAGACAAATCCAGA+AGG + chr3.4:67421246-67421265 None:intergenic 30.0%
AAGATTGTAAACAAATAGCC+GGG + chr3.4:67420835-67420854 None:intergenic 30.0%
AAGCCTCTTTGAATATATGA+AGG + chr3.4:67421764-67421783 None:intergenic 30.0%
AATGTTTAGGAGTAAAGTTG+AGG - chr3.4:67418016-67418035 MS.gene04939:intron 30.0%
ACTGGTCATGTATGATTTAT+TGG + chr3.4:67418850-67418869 None:intergenic 30.0%
ATAAAATCAAATCCTACCCT+TGG + chr3.4:67418183-67418202 None:intergenic 30.0%
ATACATGAACAGTAACCAAA+TGG - chr3.4:67418726-67418745 MS.gene04939:intron 30.0%
ATGTATTGAGTACAGTTCAT+AGG + chr3.4:67418712-67418731 None:intergenic 30.0%
ATGTCTTTCCCATTGATAAA+AGG + chr3.4:67421325-67421344 None:intergenic 30.0%
ATGTGTGGAGCAAATATTAA+AGG + chr3.4:67419653-67419672 None:intergenic 30.0%
ATGTTTAGGAGTAAAGTTGA+GGG - chr3.4:67418017-67418036 MS.gene04939:intron 30.0%
CAAATTATCTCCAAATGATG+AGG + chr3.4:67420145-67420164 None:intergenic 30.0%
CAAGATTGTAAACAAATAGC+CGG + chr3.4:67420836-67420855 None:intergenic 30.0%
CACACTACAAGAAAAGTTAT+AGG + chr3.4:67420935-67420954 None:intergenic 30.0%
CAGAAGACATTAATACTCTA+AGG + chr3.4:67417622-67417641 None:intergenic 30.0%
CATTGAATGCCTAATGTATT+TGG - chr3.4:67418419-67418438 MS.gene04939:CDS 30.0%
CTCATCATTTGGAGATAATT+TGG - chr3.4:67420143-67420162 MS.gene04939:intron 30.0%
CTGAATAGACAATTCAACAA+AGG + chr3.4:67419762-67419781 None:intergenic 30.0%
CTTCAAGTAAGACTTCAAAA+AGG + chr3.4:67421440-67421459 None:intergenic 30.0%
CTTGTGTCATACTATTTGTA+AGG + chr3.4:67421866-67421885 None:intergenic 30.0%
CTTTGTTGAATTGTCTATTC+AGG - chr3.4:67419760-67419779 MS.gene04939:CDS 30.0%
GAAGACATTAATACTCTAAG+GGG + chr3.4:67417620-67417639 None:intergenic 30.0%
GATCGTTTATTTACGCAATT+TGG - chr3.4:67418263-67418282 MS.gene04939:intron 30.0%
GATTAGCGAAAGATATATCT+GGG + chr3.4:67420470-67420489 None:intergenic 30.0%
GGAGGTAGTATATAATACTA+AGG - chr3.4:67418514-67418533 MS.gene04939:intron 30.0%
GGGTAGTTATGAATTATTAG+AGG - chr3.4:67419361-67419380 MS.gene04939:intron 30.0%
GTCAAAAACACAGTAGTTAT+AGG + chr3.4:67419242-67419261 None:intergenic 30.0%
GTTATGAATAATCTGTTGCA+TGG - chr3.4:67417847-67417866 MS.gene04939:intron 30.0%
TAAAATCAAATCCTACCCTT+GGG + chr3.4:67418182-67418201 None:intergenic 30.0%
TAATTCGGAATTTGATCAAG+AGG + chr3.4:67418794-67418813 None:intergenic 30.0%
TGAAACTGCATCATAAATAC+GGG + chr3.4:67421561-67421580 None:intergenic 30.0%
TGAATTAAGGTTTACATCGT+TGG - chr3.4:67418346-67418365 MS.gene04939:CDS 30.0%
TGATCAAATTCCGAATTACT+AGG - chr3.4:67418796-67418815 MS.gene04939:intron 30.0%
TGATTAGCGAAAGATATATC+TGG + chr3.4:67420471-67420490 None:intergenic 30.0%
TGCTGAAACTTGAATTCTAA+CGG + chr3.4:67417507-67417526 None:intergenic 30.0%
TGTCTATGCTTAAAGATCAT+AGG - chr3.4:67421627-67421646 MS.gene04939:intron 30.0%
TTAGAAGAAACTCCAAATTC+AGG + chr3.4:67421686-67421705 None:intergenic 30.0%
TTCAAGAACCAAATTGACTA+AGG + chr3.4:67420420-67420439 None:intergenic 30.0%
! ATTTGAGACATTGATGGTAT+TGG - chr3.4:67417803-67417822 MS.gene04939:intron 30.0%
! ATTTGTAAGGAAAAAGTGTG+AGG + chr3.4:67421853-67421872 None:intergenic 30.0%
! CATGTGATTTTGTCTATAGT+GGG - chr3.4:67420666-67420685 MS.gene04939:intron 30.0%
!! CTTTGGGACATTATAAGAAA+TGG - chr3.4:67421395-67421414 MS.gene04939:intron 30.0%
!! TAGAAAAAGTTGATGACTTG+TGG + chr3.4:67419907-67419926 None:intergenic 30.0%
!! TGGTATTGGTAGAAAGAATA+CGG - chr3.4:67417817-67417836 MS.gene04939:intron 30.0%
!!! CACAAAAGTTGGTATTTTAC+CGG + chr3.4:67421940-67421959 None:intergenic 30.0%
!!! CTTTTTGAAGTCTTACTTGA+AGG - chr3.4:67421438-67421457 MS.gene04939:intron 30.0%
AAAAATCTGACATGCAGTAG+TGG + chr3.4:67420301-67420320 None:intergenic 35.0%
AAAAGCAAAGATCCCAATGA+CGG - chr3.4:67420722-67420741 MS.gene04939:intron 35.0%
AAAATCTGACATGCAGTAGT+GGG + chr3.4:67420300-67420319 None:intergenic 35.0%
AATACTGAAACCGTTGTTGA+AGG + chr3.4:67417594-67417613 None:intergenic 35.0%
AATGATATTGAGAATGCACG+TGG + chr3.4:67418078-67418097 None:intergenic 35.0%
ACTACTCAAATGTTTCCGTA+AGG - chr3.4:67421822-67421841 MS.gene04939:intron 35.0%
ACTCTATGATTCCAATACAG+AGG + chr3.4:67419061-67419080 None:intergenic 35.0%
AGAAAATAGAACCTAGAGAG+AGG - chr3.4:67419278-67419297 MS.gene04939:intron 35.0%
AGAAATTGGGGACAATTTCT+TGG - chr3.4:67419453-67419472 MS.gene04939:intron 35.0%
AGAACTAACTAGAGAAAGGT+TGG + chr3.4:67419393-67419412 None:intergenic 35.0%
AGTGACATCTGATAGATTCA+AGG + chr3.4:67420348-67420367 None:intergenic 35.0%
ATACCATTTGGAGATTGCTT+TGG - chr3.4:67421378-67421397 MS.gene04939:intron 35.0%
ATAGCCGGGACAAAAATATA+AGG + chr3.4:67420821-67420840 None:intergenic 35.0%
ATCTCCAAATGGTATAGCTT+TGG + chr3.4:67421373-67421392 None:intergenic 35.0%
ATTACAGGAACTTTACCTTC+AGG + chr3.4:67419994-67420013 None:intergenic 35.0%
CAGCATTTGAGTCTTAAACT+TGG - chr3.4:67419706-67419725 MS.gene04939:CDS 35.0%
CTACTCAAATGTTTCCGTAA+GGG - chr3.4:67421823-67421842 MS.gene04939:intron 35.0%
CTCAAGAACTAACTAGAGAA+AGG + chr3.4:67419397-67419416 None:intergenic 35.0%
GAAAATAGAACCTAGAGAGA+GGG - chr3.4:67419279-67419298 MS.gene04939:intron 35.0%
GCTAACAAAAGAAACTCACA+TGG - chr3.4:67420508-67420527 MS.gene04939:intron 35.0%
GGAATTTGATCAAGAGGTAA+GGG + chr3.4:67418788-67418807 None:intergenic 35.0%
GTGACATCTGATAGATTCAA+GGG + chr3.4:67420347-67420366 None:intergenic 35.0%
GTTCCTGTAATAAACTTCGA+CGG - chr3.4:67420003-67420022 MS.gene04939:intron 35.0%
TACCATTTGGAGATTGCTTT+GGG - chr3.4:67421379-67421398 MS.gene04939:intron 35.0%
TACTCAAATGTTTCCGTAAG+GGG - chr3.4:67421824-67421843 MS.gene04939:intron 35.0%
TAGTTCATGGATGTAGGAAA+TGG - chr3.4:67419024-67419043 MS.gene04939:CDS 35.0%
TGAAACTTGAATTCTAACGG+TGG + chr3.4:67417504-67417523 None:intergenic 35.0%
TGAGTGATTCATCTTTGAGT+GGG - chr3.4:67419413-67419432 MS.gene04939:intron 35.0%
TGCTTATAAATGTGACTGGA+GGG + chr3.4:67418380-67418399 None:intergenic 35.0%
TGTGGTCTGTAAGTGAAAAA+TGG + chr3.4:67419889-67419908 None:intergenic 35.0%
TTACAGTCTCCAATCTTGTT+AGG + chr3.4:67417695-67417714 None:intergenic 35.0%
TTCCTGTAATAAACTTCGAC+GGG - chr3.4:67420004-67420023 MS.gene04939:intron 35.0%
TTCGGTAATTGCACAAAAGT+TGG + chr3.4:67421951-67421970 None:intergenic 35.0%
TTGAGTGATTCATCTTTGAG+TGG - chr3.4:67419412-67419431 MS.gene04939:intron 35.0%
TTGCTTATAAATGTGACTGG+AGG + chr3.4:67418381-67418400 None:intergenic 35.0%
TTTACCTTATGAGCCGAAAT+TGG - chr3.4:67419825-67419844 MS.gene04939:intron 35.0%
! ACTTACAGGAAATTTTCTCG+AGG - chr3.4:67422167-67422186 MS.gene04939:CDS 35.0%
! AGTAGTGGGGAAAAACATAA+AGG + chr3.4:67420286-67420305 None:intergenic 35.0%
! CTTACAGGAAATTTTCTCGA+GGG - chr3.4:67422168-67422187 MS.gene04939:CDS 35.0%
! CTTTTCCTGCATTATTGTCA+TGG - chr3.4:67420907-67420926 MS.gene04939:intron 35.0%
! GCATGTGATTTTGTCTATAG+TGG - chr3.4:67420665-67420684 MS.gene04939:intron 35.0%
! GTAGTGGGGAAAAACATAAA+GGG + chr3.4:67420285-67420304 None:intergenic 35.0%
! TAGGTTGCTAGATTTCCTTT+TGG - chr3.4:67419589-67419608 MS.gene04939:intron 35.0%
! TGCCTTAAAATCTGCTGTTT+GGG - chr3.4:67419152-67419171 MS.gene04939:intron 35.0%
! TTACTAGGACTCCTTTTTCT+TGG - chr3.4:67418811-67418830 MS.gene04939:intron 35.0%
! TTGCTTTAGTTCATGGATGT+AGG - chr3.4:67419018-67419037 MS.gene04939:CDS 35.0%
! TTTTCTTATCTCGATCCTTC+TGG - chr3.4:67421228-67421247 MS.gene04939:intron 35.0%
!! AAAATTGCAAAAACGGGCTA+GGG + chr3.4:67421790-67421809 None:intergenic 35.0%
!! TGTGGATTTGCTATACATCT+AGG - chr3.4:67419570-67419589 MS.gene04939:intron 35.0%
AAATCTGACATGCAGTAGTG+GGG + chr3.4:67420299-67420318 None:intergenic 40.0%
AACAGATCATCTAGGGATCA+GGG + chr3.4:67422057-67422076 None:intergenic 40.0%
AATAAACTTCGACGGGAAGT+GGG - chr3.4:67420011-67420030 MS.gene04939:intron 40.0%
ACACAGACAACAGATCATCT+AGG + chr3.4:67422065-67422084 None:intergenic 40.0%
ACAGGAGCTCATTAACCATT+TGG + chr3.4:67418744-67418763 None:intergenic 40.0%
ACAGTTCATAGGCACAAAAG+AGG + chr3.4:67418701-67418720 None:intergenic 40.0%
AGAGAGGAAAGGAGAGAAAT+TGG - chr3.4:67419439-67419458 MS.gene04939:intron 40.0%
AGAGGAAAGGAGAGAAATTG+GGG - chr3.4:67419441-67419460 MS.gene04939:intron 40.0%
AGCAACAGCAATCAACCAAA+AGG + chr3.4:67419607-67419626 None:intergenic 40.0%
AGGACCAAAGCTATACCATT+TGG - chr3.4:67421366-67421385 MS.gene04939:intron 40.0%
AGTTCATAGGCACAAAAGAG+GGG + chr3.4:67418699-67418718 None:intergenic 40.0%
CAAACCCTGTTCCAAGAAAA+AGG + chr3.4:67418825-67418844 None:intergenic 40.0%
CAATACAACAGCCTCTGTAT+TGG - chr3.4:67419047-67419066 MS.gene04939:CDS 40.0%
CAATCGGTATTTGCACAGAA+GGG + chr3.4:67421889-67421908 None:intergenic 40.0%
CAATGGGAAAGACATATCTG+CGG - chr3.4:67421330-67421349 MS.gene04939:intron 40.0%
CACAGACAACAGATCATCTA+GGG + chr3.4:67422064-67422083 None:intergenic 40.0%
CAGTTCATAGGCACAAAAGA+GGG + chr3.4:67418700-67418719 None:intergenic 40.0%
CCAACAACTAGTGAAAAGGA+GGG + chr3.4:67422033-67422052 None:intergenic 40.0%
CGGAATTTGATCAAGAGGTA+AGG + chr3.4:67418789-67418808 None:intergenic 40.0%
CTTACCACTCCTAACAAGAT+TGG - chr3.4:67417683-67417702 MS.gene04939:intron 40.0%
GAGACTTTGTTAACCCAGTT+CGG + chr3.4:67419508-67419527 None:intergenic 40.0%
GAGAGGAAAGGAGAGAAATT+GGG - chr3.4:67419440-67419459 MS.gene04939:intron 40.0%
GCTTTAACAGCAACTTCCAA+TGG + chr3.4:67417659-67417678 None:intergenic 40.0%
GTAGAAAGAATACGGTAGTG+TGG - chr3.4:67417825-67417844 MS.gene04939:intron 40.0%
GTGCCTTAAAATCTGCTGTT+TGG - chr3.4:67419151-67419170 MS.gene04939:intron 40.0%
GTTGAAGGAGCTAGTTGAAA+CGG + chr3.4:67417579-67417598 None:intergenic 40.0%
TAATAAACTTCGACGGGAAG+TGG - chr3.4:67420010-67420029 MS.gene04939:intron 40.0%
TCAACTAGCTCCTTCAACAA+CGG - chr3.4:67417581-67417600 MS.gene04939:intron 40.0%
TCAATAGGGAGACCTGAATT+TGG - chr3.4:67421671-67421690 MS.gene04939:intron 40.0%
TCAGGGATGTTGTTGTAATC+TGG + chr3.4:67418541-67418560 None:intergenic 40.0%
TCTGGGAATCAAACTGACTA+AGG + chr3.4:67420453-67420472 None:intergenic 40.0%
TTCAAAAAGGTCAGCGAATC+AGG + chr3.4:67421427-67421446 None:intergenic 40.0%
TTCCCGTCGAAGTTTATTAC+AGG + chr3.4:67420009-67420028 None:intergenic 40.0%
TTCCTTGAAATCAGTCCTGA+AGG - chr3.4:67419976-67419995 MS.gene04939:intron 40.0%
TTCCTTGAGGTAATCGTTGA+AGG + chr3.4:67420780-67420799 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr3.4:67418496-67418515 MS.gene04939:intron 40.0%
! ACCCCAAACAGCAGATTTTA+AGG + chr3.4:67419157-67419176 None:intergenic 40.0%
! AGGGTCATACATTTTCCTTG+AGG + chr3.4:67420793-67420812 None:intergenic 40.0%
! CAAAATTGCAAAAACGGGCT+AGG + chr3.4:67421791-67421810 None:intergenic 40.0%
! CACAGGGTCCTTTTATCAAT+GGG - chr3.4:67421314-67421333 MS.gene04939:intron 40.0%
! CTTTTTCTTGGAACAGGGTT+TGG - chr3.4:67418823-67418842 MS.gene04939:intron 40.0%
! GACTCCTTTTTCTTGGAACA+GGG - chr3.4:67418818-67418837 MS.gene04939:intron 40.0%
! GCCTTAAAATCTGCTGTTTG+GGG - chr3.4:67419153-67419172 MS.gene04939:intron 40.0%
! GTGCAAATACCGATTGCTAA+AGG - chr3.4:67421893-67421912 MS.gene04939:intron 40.0%
! TACCTTCAGGACTGATTTCA+AGG + chr3.4:67419981-67420000 None:intergenic 40.0%
! TCACAGGGTCCTTTTATCAA+TGG - chr3.4:67421313-67421332 MS.gene04939:intron 40.0%
! TGAAGCACTCCTTTAGCAAT+CGG + chr3.4:67421905-67421924 None:intergenic 40.0%
! TTGAAGGTGTGTCTTGTATC+CGG - chr3.4:67417880-67417899 MS.gene04939:intron 40.0%
! TTTGGTTGATTGCTGTTGCT+TGG - chr3.4:67419607-67419626 MS.gene04939:intron 40.0%
!! AGTTGGTATTTTACCGGCTA+CGG + chr3.4:67421934-67421953 None:intergenic 40.0%
!! ATAGCTTTGGTCCTAGTGAT+AGG + chr3.4:67421360-67421379 None:intergenic 40.0%
!! ATGGTATCGGTACCATCATA+AGG + chr3.4:67418156-67418175 None:intergenic 40.0%
!! TGGTATCGGTACCATCATAA+GGG + chr3.4:67418155-67418174 None:intergenic 40.0%
AAAGGTCAGCGAATCAGGTA+CGG + chr3.4:67421422-67421441 None:intergenic 45.0%
AAATCCTACCCTTGGGTAGA+TGG + chr3.4:67418175-67418194 None:intergenic 45.0%
ACAGATCATCTAGGGATCAG+GGG + chr3.4:67422056-67422075 None:intergenic 45.0%
ACCCAGACGTAGGTGAATTT+GGG - chr3.4:67419482-67419501 MS.gene04939:intron 45.0%
ACCTTATGAGCCGAAATTGG+TGG - chr3.4:67419828-67419847 MS.gene04939:intron 45.0%
AGCAACACCCTTTGGCTAAA+AGG + chr3.4:67419787-67419806 None:intergenic 45.0%
AGGGAACACGGAAAAACCTA+GGG - chr3.4:67419298-67419317 MS.gene04939:intron 45.0%
AGGGTCCATGACAATAATGC+AGG + chr3.4:67420915-67420934 None:intergenic 45.0%
CAAATGCAAGGAAGGGTGAA+AGG - chr3.4:67418639-67418658 MS.gene04939:intron 45.0%
CAACAGATCATCTAGGGATC+AGG + chr3.4:67422058-67422077 None:intergenic 45.0%
CAACCTTCAATGACATCCTC+CGG + chr3.4:67422220-67422239 None:intergenic 45.0%
CAACTACTCTGTAGTCAGAG+AGG + chr3.4:67418305-67418324 None:intergenic 45.0%
CACACCAAGACAATGATGTG+TGG + chr3.4:67419668-67419687 None:intergenic 45.0%
CTCCTTCAACGATTACCTCA+AGG - chr3.4:67420775-67420794 MS.gene04939:intron 45.0%
CTTTCACCCTTCCTTGCATT+TGG + chr3.4:67418641-67418660 None:intergenic 45.0%
GCAACACCCTTTGGCTAAAA+GGG + chr3.4:67419786-67419805 None:intergenic 45.0%
GCAATCGGTATTTGCACAGA+AGG + chr3.4:67421890-67421909 None:intergenic 45.0%
GCAGGAAAAGATGTAATGCC+AGG + chr3.4:67420897-67420916 None:intergenic 45.0%
GCATGGACACTTCTGATTGA+AGG - chr3.4:67417864-67417883 MS.gene04939:intron 45.0%
GCCAACAACTAGTGAAAAGG+AGG + chr3.4:67422034-67422053 None:intergenic 45.0%
GCTTGTTCTGTTCCGTCATT+GGG + chr3.4:67420737-67420756 None:intergenic 45.0%
GGACAAGCAAATCACCATTC+TGG + chr3.4:67419868-67419887 None:intergenic 45.0%
GTCCCAAAGCAATCTCCAAA+TGG + chr3.4:67421384-67421403 None:intergenic 45.0%
GTCTCCAATCTTGTTAGGAG+TGG + chr3.4:67417690-67417709 None:intergenic 45.0%
TACCCTTGGGTAGATGGTAT+CGG + chr3.4:67418169-67418188 None:intergenic 45.0%
TACCGATACCATCTACCCAA+GGG - chr3.4:67418164-67418183 MS.gene04939:intron 45.0%
TCCACCAATTTCGGCTCATA+AGG + chr3.4:67419832-67419851 None:intergenic 45.0%
TCGGTAACGAAGGTGGTTAA+CGG + chr3.4:67417546-67417565 None:intergenic 45.0%
TGCTCCACACATCATTGTCT+TGG - chr3.4:67419661-67419680 MS.gene04939:CDS 45.0%
TGCTTCATAACAACCGTAGC+CGG - chr3.4:67421918-67421937 MS.gene04939:intron 45.0%
TGCTTGTTCTGTTCCGTCAT+TGG + chr3.4:67420738-67420757 None:intergenic 45.0%
TGGTCATGTATGACCTTGAC+AGG + chr3.4:67418762-67418781 None:intergenic 45.0%
TGGTTAATGAGCTCCTGTCA+AGG - chr3.4:67418746-67418765 MS.gene04939:intron 45.0%
TTTGGGCCAAATGCAAGGAA+GGG - chr3.4:67418632-67418651 MS.gene04939:intron 45.0%
! AATCTGCTGTTTGGGGTTTC+TGG - chr3.4:67419160-67419179 MS.gene04939:intron 45.0%
! ATTCAGGCCCTTTTAGCCAA+AGG - chr3.4:67419776-67419795 MS.gene04939:intron 45.0%
! CCCTCCTTTTCACTAGTTGT+TGG - chr3.4:67422030-67422049 MS.gene04939:intron 45.0%
! GGACTCCTTTTTCTTGGAAC+AGG - chr3.4:67418817-67418836 MS.gene04939:intron 45.0%
! TTCAGGCCCTTTTAGCCAAA+GGG - chr3.4:67419777-67419796 MS.gene04939:intron 45.0%
!! ATCTTTGAGTGGGTTGAGAG+AGG - chr3.4:67419423-67419442 MS.gene04939:intron 45.0%
!! TGCTGTTGCTTGGACTGTTT+TGG - chr3.4:67419617-67419636 MS.gene04939:intron 45.0%
!! TTCGAGTGTTGAGAGCTCTT+GGG - chr3.4:67419321-67419340 MS.gene04939:intron 45.0%
AACATCCCTGAAACGTACCG+CGG - chr3.4:67418550-67418569 MS.gene04939:intron 50.0%
AAGTGTGAGGAAGCCCCTTA+CGG + chr3.4:67421840-67421859 None:intergenic 50.0%
ACTTCCAATGGCTCAGAAGG+AGG + chr3.4:67417647-67417666 None:intergenic 50.0%
AGGTCTCTCAATCTCTGACC+TGG - chr3.4:67420876-67420895 MS.gene04939:intron 50.0%
AGGTGAATTTGGGCCGAACT+GGG - chr3.4:67419492-67419511 MS.gene04939:intron 50.0%
AGGTTGGCGTCCTAAAGTAG+AGG - chr3.4:67422234-67422253 MS.gene04939:CDS 50.0%
ATAGGCACAAAAGAGGGGCA+AGG + chr3.4:67418694-67418713 None:intergenic 50.0%
CACCCAGACGTAGGTGAATT+TGG - chr3.4:67419481-67419500 MS.gene04939:intron 50.0%
CATTAACACACGTGCACAGC+CGG - chr3.4:67422198-67422217 MS.gene04939:CDS 50.0%
CGGAGGATGTCATTGAAGGT+TGG - chr3.4:67422218-67422237 MS.gene04939:CDS 50.0%
CTAGTTGAAACGGCGTAGCT+TGG + chr3.4:67417569-67417588 None:intergenic 50.0%
GAACCTAGAGAGAGGGAACA+CGG - chr3.4:67419286-67419305 MS.gene04939:intron 50.0%
GAGGGAACACGGAAAAACCT+AGG - chr3.4:67419297-67419316 MS.gene04939:intron 50.0%
GATACCATCTACCCAAGGGT+AGG - chr3.4:67418168-67418187 MS.gene04939:intron 50.0%
GCAACTTCCAATGGCTCAGA+AGG + chr3.4:67417650-67417669 None:intergenic 50.0%
GCCCAAATTCACCTACGTCT+GGG + chr3.4:67419486-67419505 None:intergenic 50.0%
GGGGCCAACAACTAGTGAAA+AGG + chr3.4:67422037-67422056 None:intergenic 50.0%
GGTTGGCGTCCTAAAGTAGA+GGG - chr3.4:67422235-67422254 MS.gene04939:CDS 50.0%
GTAACGAAGGTGGTTAACGG+TGG + chr3.4:67417543-67417562 None:intergenic 50.0%
GTTTGGGCCAAATGCAAGGA+AGG - chr3.4:67418631-67418650 MS.gene04939:intron 50.0%
TAGGCACAAAAGAGGGGCAA+GGG + chr3.4:67418693-67418712 None:intergenic 50.0%
TAGGTGAATTTGGGCCGAAC+TGG - chr3.4:67419491-67419510 MS.gene04939:intron 50.0%
TGATCAAGAGGTAAGGGAGC+TGG + chr3.4:67418782-67418801 None:intergenic 50.0%
TGTAGTGTGCATCGCTTAGC+TGG - chr3.4:67420946-67420965 MS.gene04939:intron 50.0%
TTGAAACGGCGTAGCTTGGT+CGG + chr3.4:67417565-67417584 None:intergenic 50.0%
TTTCCGTGTTCCCTCTCTCT+AGG + chr3.4:67419292-67419311 None:intergenic 50.0%
TTTGTTGCAGGGAGCGACTA+GGG + chr3.4:67418593-67418612 None:intergenic 50.0%
! AAGCCCGACTGTTTGTTGCA+GGG + chr3.4:67418604-67418623 None:intergenic 50.0%
! ATTGGTGACCCCACCTGAAA+AGG - chr3.4:67420089-67420108 MS.gene04939:intron 50.0%
! GAAGTATCCTAGCCCACCAT+TGG - chr3.4:67420071-67420090 MS.gene04939:intron 50.0%
! GCATACGCTGTAGCCTTTTC+AGG + chr3.4:67420105-67420124 None:intergenic 50.0%
! GTACCGATACCATCTACCCA+AGG - chr3.4:67418163-67418182 MS.gene04939:intron 50.0%
! TAAGCCCGACTGTTTGTTGC+AGG + chr3.4:67418605-67418624 None:intergenic 50.0%
!! GTTCGAGTGTTGAGAGCTCT+TGG - chr3.4:67419320-67419339 MS.gene04939:intron 50.0%
!! TACGCTGTAGCCTTTTCAGG+TGG + chr3.4:67420102-67420121 None:intergenic 50.0%
!! TGAGTGGGTTGAGAGAGGAA+AGG - chr3.4:67419428-67419447 MS.gene04939:intron 50.0%
!!! ACGCTGTAGCCTTTTCAGGT+GGG + chr3.4:67420101-67420120 None:intergenic 50.0%
!!! TTTTCAGGTGGGGTCACCAA+TGG + chr3.4:67420090-67420109 None:intergenic 50.0%
ACATCCCTGAAACGTACCGC+GGG - chr3.4:67418551-67418570 MS.gene04939:intron 55.0%
ACGAAGGTGGTTAACGGTGG+CGG + chr3.4:67417540-67417559 None:intergenic 55.0%
AGCTCTTGGGCGAGGTTCTA+GGG - chr3.4:67419334-67419353 MS.gene04939:intron 55.0%
AGCTTGGTCGGTAACGAAGG+TGG + chr3.4:67417553-67417572 None:intergenic 55.0%
AGTCGGGCTTAACGCACGTT+TGG - chr3.4:67418614-67418633 MS.gene04939:intron 55.0%
CAGCCGGAGGATGTCATTGA+AGG - chr3.4:67422214-67422233 MS.gene04939:CDS 55.0%
CCAGTGTCAGCAACACCCTT+TGG + chr3.4:67419795-67419814 None:intergenic 55.0%
CGCTCCCTGCAACAAACAGT+CGG - chr3.4:67418597-67418616 MS.gene04939:intron 55.0%
CGTAGCTTGGTCGGTAACGA+AGG + chr3.4:67417556-67417575 None:intergenic 55.0%
GCACGTTTGGGCCAAATGCA+AGG - chr3.4:67418627-67418646 MS.gene04939:intron 55.0%
GCTCCCTGCAACAAACAGTC+GGG - chr3.4:67418598-67418617 MS.gene04939:intron 55.0%
GCTCTCAACACTCGAACCCT+AGG + chr3.4:67419317-67419336 None:intergenic 55.0%
GGCCCAAATTCACCTACGTC+TGG + chr3.4:67419487-67419506 None:intergenic 55.0%
GTCGGGCTTAACGCACGTTT+GGG - chr3.4:67418615-67418634 MS.gene04939:intron 55.0%
TCTGCGGCTGACCTATCACT+AGG - chr3.4:67421346-67421365 MS.gene04939:intron 55.0%
TGCTCCTCCTTCTGAGCCAT+TGG - chr3.4:67417640-67417659 MS.gene04939:intron 55.0%
TTGGTCACTCACCCAGACGT+AGG - chr3.4:67419472-67419491 MS.gene04939:intron 55.0%
! CGAGGTGTCAGTTTCAGCGT+CGG - chr3.4:67417950-67417969 MS.gene04939:intron 55.0%
! CTGCTGTTTGGGGTTTCTGG+TGG - chr3.4:67419163-67419182 MS.gene04939:intron 55.0%
! GTTTGTTGCAGGGAGCGACT+AGG + chr3.4:67418594-67418613 None:intergenic 55.0%
!! AAGGGTGTTGCTGACACTGG+AGG - chr3.4:67419795-67419814 MS.gene04939:intron 55.0%
!! CAGTTTCAGCGTCGGTGTGT+CGG - chr3.4:67417958-67417977 MS.gene04939:intron 55.0%
!! CCAAAGGGTGTTGCTGACAC+TGG - chr3.4:67419792-67419811 MS.gene04939:intron 55.0%
!!! CGCTGTAGCCTTTTCAGGTG+GGG + chr3.4:67420100-67420119 None:intergenic 55.0%
ATCCCTGAAACGTACCGCGG+GGG - chr3.4:67418553-67418572 MS.gene04939:intron 60.0%
CAGGTGGGGTCACCAATGGT+GGG + chr3.4:67420086-67420105 None:intergenic 60.0%
CATCCCTGAAACGTACCGCG+GGG - chr3.4:67418552-67418571 MS.gene04939:intron 60.0%
GAGCTCTTGGGCGAGGTTCT+AGG - chr3.4:67419333-67419352 MS.gene04939:intron 60.0%
GTCTCGAACGCGACACTTGC+CGG + chr3.4:67417902-67417921 None:intergenic 60.0%
GTGTTGAGAGCTCTTGGGCG+AGG - chr3.4:67419326-67419345 MS.gene04939:intron 60.0%
TAACACACGTGCACAGCCGG+AGG - chr3.4:67422201-67422220 MS.gene04939:CDS 60.0%
TCAGGTGGGGTCACCAATGG+TGG + chr3.4:67420087-67420106 None:intergenic 60.0%
AGCCCCCGCGGTACGTTTCA+GGG + chr3.4:67418558-67418577 None:intergenic 65.0%
AGGGAGCGACTAGGGTGCAG+GGG + chr3.4:67418585-67418604 None:intergenic 65.0%
CAGGGAGCGACTAGGGTGCA+GGG + chr3.4:67418586-67418605 None:intergenic 65.0%
TAGCCCCCGCGGTACGTTTC+AGG + chr3.4:67418559-67418578 None:intergenic 65.0%
!! GGGCGAGGTTCTAGGGCCTT+GGG - chr3.4:67419341-67419360 MS.gene04939:intron 65.0%
!! GGGGTCACCAATGGTGGGCT+AGG + chr3.4:67420081-67420100 None:intergenic 65.0%
!! TGGGCGAGGTTCTAGGGCCT+TGG - chr3.4:67419340-67419359 MS.gene04939:intron 65.0%
GCAGGGAGCGACTAGGGTGC+AGG + chr3.4:67418587-67418606 None:intergenic 70.0%
TGCAGGGGAGATAGCCCCCG+CGG + chr3.4:67418570-67418589 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 67417497 67422261 67417497 ID=MS.gene04939
chr3.4 mRNA 67417497 67422261 67417497 ID=MS.gene04939.t1;Parent=MS.gene04939
chr3.4 exon 67422048 67422261 67422048 ID=MS.gene04939.t1.exon1;Parent=MS.gene04939.t1
chr3.4 CDS 67422048 67422261 67422048 ID=cds.MS.gene04939.t1;Parent=MS.gene04939.t1
chr3.4 exon 67419886 67419976 67419886 ID=MS.gene04939.t1.exon2;Parent=MS.gene04939.t1
chr3.4 CDS 67419886 67419976 67419886 ID=cds.MS.gene04939.t1;Parent=MS.gene04939.t1
chr3.4 exon 67419640 67419783 67419640 ID=MS.gene04939.t1.exon3;Parent=MS.gene04939.t1
chr3.4 CDS 67419640 67419783 67419640 ID=cds.MS.gene04939.t1;Parent=MS.gene04939.t1
chr3.4 exon 67418956 67419073 67418956 ID=MS.gene04939.t1.exon4;Parent=MS.gene04939.t1
chr3.4 CDS 67418956 67419073 67418956 ID=cds.MS.gene04939.t1;Parent=MS.gene04939.t1
chr3.4 exon 67418299 67418439 67418299 ID=MS.gene04939.t1.exon5;Parent=MS.gene04939.t1
chr3.4 CDS 67418299 67418439 67418299 ID=cds.MS.gene04939.t1;Parent=MS.gene04939.t1
chr3.4 exon 67417497 67417583 67417497 ID=MS.gene04939.t1.exon6;Parent=MS.gene04939.t1
chr3.4 CDS 67417497 67417583 67417497 ID=cds.MS.gene04939.t1;Parent=MS.gene04939.t1
Gene Sequence

>MS.gene04939

ATGTCCACCGTTAGAATTCAAGTTTCAGCATGCGCTCTTTCCGCCACCGTTAACCACCTTCGTTACCGACCAAGCTACGCCGTTTCAACTAGCTCCTTCAACAACGGTTTCAGTATTAAACCCCTTAGAGTATTAATGTCTTCTGCTCCTCCTTCTGAGCCATTGGAAGTTGCTGTTAAAGCTTCTCTTACCACTCCTAACAAGATTGGAGACTGTAAAAATTCTTACCCTTTTCATGGTTTTAGTTATTTTCAGTGTTGAGCTTGTTTTTTTGTATTGGTTGATAGAAATTGAAATGAAATTAGTATTTGAGACATTGATGGTATTGGTAGAAAGAATACGGTAGTGTGGTTATGAATAATCTGTTGCATGGACACTTCTGATTGAAGGTGTGTCTTGTATCCGGCAAGTGTCGCGTTCGAGACTGACACTTGTAATTACATTAAATTATGTCGAGGTGTCAGTTTCAGCGTCGGTGTGTCGGTGTTTGTGTCTGTGTCGTGCTTCATAAGTTTTGAAAATGTTTAGGAGTAAAGTTGAGGGACATAAATCATGATGTATCTAGACTTATGTTGTGTCCACGTGCATTCTCAATATCATTTTTCTTTGAAATTTGAATTTTTCTTTAAGAAAATTTTTCTTTGAATTTTATATACCCTTATGATGGTACCGATACCATCTACCCAAGGGTAGGATTTGATTTTATTAGAATATAATAACTAGTAAGAAAAGATTAAAGAAATTCAAATCACAAACAATGGAACATGATCGTTTATTTACGCAATTTGGTCAAGTGTGTTGTTTACCTCTCTGACTACAGAGTAGTTGTAGTCCTGTATACTACTTAAGTGAATTAAGGTTTACATCGTTGGCATATACTCCCTCCAGTCACATTTATAAGCAAAAAACTACATTTTAGGTTCATTGAATGCCTAATGTATTTGGTCTATTATATATACCAAATACATTAAGTATTCAATGAATCTAAAAAGTAGTTTTTTGCTTATAAATGTGACCGGAGGTAGTATATAATACTAAGGTCCAGATTACAACAACATCCCTGAAACGTACCGCGGGGGCTATCTCCCCTGCACCCTAGTCGCTCCCTGCAACAAACAGTCGGGCTTAACGCACGTTTGGGCCAAATGCAAGGAAGGGTGAAAGGAGCTTTGCAACGATGCGCTAGCTCAGCTCCCTTGCCCCTCTTTTGTGCCTATGAACTGTACTCAATACATGAACAGTAACCAAATGGTTAATGAGCTCCTGTCAAGGTCATACATGACCAGCTCCCTTACCTCTTGATCAAATTCCGAATTACTAGGACTCCTTTTTCTTGGAACAGGGTTTGGACCAATAAATCATACATGACCAGTTACTAGCTAAATTTTAGATTATTAGCTCAAATGTCTGTGTGTATGTGTTGAAGATACAAGTAAAATTGTGTAATTTTTCATGTCTGCAAAGTTTTGAACTTCTATTAAGATGAAAATTGAGTTATTGACATTGACATTTCATTTATTTTTGCTTTAGTTCATGGATGTAGGAAATGGCAATACAACAGCCTCTGTATTGGAATCATAGAGTCAATTATGTTATGCATATATTCTCTATTTGATAAACCAAAGAAGATTTTTGTTTATATTTGTAGAGGATTGTGCCTTAAAATCTGCTGTTTGGGGTTTCTGGTGGTTGTGAATCGATTCATAATAAGAATATGAATTGATTCACTCTGTGTTTTTTTGCCTATAACTACTGTGTTTTTGACAGCTTTTGCACAGCTCAGAAAATAGAACCTAGAGAGAGGGAACACGGAAAAACCTAGGGTTCGAGTGTTGAGAGCTCTTGGGCGAGGTTCTAGGGCCTTGGGTAGTTATGAATTATTAGAGGAAGGATCCAACCTTTCTCTAGTTAGTTCTTGAGTGATTCATCTTTGAGTGGGTTGAGAGAGGAAAGGAGAGAAATTGGGGACAATTTCTTGGTCACTCACCCAGACGTAGGTGAATTTGGGCCGAACTGGGTTAACAAAGTCTCTGTGTTTTTTCATCTTCCTTTATCTTTGTTCTTTGATTTAATTGTGGATTTGCTATACATCTAGGTTGCTAGATTTCCTTTTGGTTGATTGCTGTTGCTTGGACTGTTTTGGTTGTTAGTTGCCTTTAATATTTGCTCCACACATCATTGTCTTGGTGTGATTTGTTCAAATTTGCAACAGCATTTGAGTCTTAAACTTGGAGTAGCTATAGACTATAATCACTTAGTGACCCTTTGTTGAATTGTCTATTCAGGCCCTTTTAGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATTTACCTTATGAGCCGAAATTGGTGGATTTAAGAAACAAACCAGAATGGTGATTTGCTTGTCCATTTTTCACTTACAGACCACAAGTCATCAACTTTTTCTATCGTCGTAGTATTTCGTTTCCTTGTAATAATTTTTTTTGTTGGTTCAGGTTCCTTGAAATCAGTCCTGAAGGTAAAGTTCCTGTAATAAACTTCGACGGGAAGTGGGTTGCAGATTCAGATTTAATCACACAAACATTGGAAGAGAAGTATCCTAGCCCACCATTGGTGACCCCACCTGAAAAGGCTACAGCGTATGCTTCTGTCTTATACATTTCCTCATCATTTGGAGATAATTTGGAATTATAAAATCTAGTTTTCTTGTACATAGCTTTGAGTTTTTTTTTTTGAAAAATACATGGTGATGCAATTAGACAAGCTTAAACAGTTACATCTTGCTCATCTTTTACTTACTTTCCCTTTATGTTTTTCCCCACTACTGCATGTCAGATTTTTATTGAAGTAAATAGTCATTCTAGCCCTTGAATCTATCAGATGTCACTATAGTCCTTGAATATATCCAAATTATAAATCATCCATGAATGTATTTTTCCTTAGTCAATTTGGTTCTTGAAATGTATCTCACCTTAGTCAGTTTGATTCCCAGATATATCTTTCGCTAATCAGTTTAGTCCATGAAATTGCTAACAAAAGAAACTCACATGGACATTTTTTTGATTTTAATACATTAGGGAACTATAGTGACACCGTATGACACAATTAATCAAAATGATTCTTTACTCCTCTTTATTCTTGTATTTACTTGGCGATAATAAACTTACTCTGATTATCTAATGTGTGCATGTGATTTTGTCTATAGTGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAAAGCAAAGATCCCAATGACGGAACAGAACAAGCATTACTAAATGAACTGAGCTCCTTCAACGATTACCTCAAGGAAAATGTATGACCCTTTTTTCCTTATATTTTTGTCCCGGCTATTTGTTTACAATCTTGCTATAAACTTTCAGTATTTTAGGTCTCTCAATCTCTGACCTGGCATTACATCTTTTCCTGCATTATTGTCATGGACCCTATAACTTTTCTTGTAGTGTGCATCGCTTAGCTGGTTCCTCTTGTATATACATAAGATGTTACAAAATATTAAACGGGGATCAGCAAATAAATGCATGCTATATATTATTGATTTCTTGATATACATTACTGTCATTTAGTCAGTTTAAGACTTGTAAAGTTTATGAATAATTGGATGTAAGCTGTTTTGTAAACAATTAATTTAAGCAACATTAATTTCATATATTTTTTTTGAAATGTATGTAAAAGAATACGATCCAAAACACTTCTATTTATATAACTTTGAGGGCACTATTTTCTTATCTCGATCCTTCTGGATTTGTCTATCATTTTTTCTTCCTTTCGTATAAATTTTTTAACCTGTGCAAATTTTTTCTTTTCACAGGGTCCTTTTATCAATGGGAAAGACATATCTGCGGCTGACCTATCACTAGGACCAAAGCTATACCATTTGGAGATTGCTTTGGGACATTATAAGAAATGGACCGTACCTGATTCGCTGACCTTTTTGAAGTCTTACTTGAAGGTACGTTCACAATAAGCCTCCTCACTCAACATTTATCATATTCTTGTACTTTTAGACGATTTTCAAATCTAGAATTGAACGCATACTACTTTCTCAAACCCGTATTTATGATGCAGTTTCATTAATGCAAATAGTTTACAAAATTTGCGGAAAAAGATGCTATTCATTGTCTATGCTTAAAGATCATAGGCTAATGAGTGAAAATGATTTATCAATAGGGAGACCTGAATTTGGAGTTTCTTCTAAGCTCTAAATTCAAAAGTTTTTGTAATGTGCTTTGGCCTTTGTAAATCTGTTTTTTCCTTCATATATTCAAAGAGGCTTTTTCCCTAGCCCGTTTTTGCAATTTTGAACTTTTTCTCACTACTCAAATGTTTCCGTAAGGGGCTTCCTCACACTTTTTCCTTACAAATAGTATGACACAAGCCCTTCTGTGCAAATACCGATTGCTAAAGGAGTGCTTCATAACAACCGTAGCCGGTAAAATACCAACTTTTGTGCAATTACCGAATGTAAACGAAAAATAATGTTCAATTTTGATTTTCTTACACTTTCTTTTCTGTTACTTTTCCCTCCTTTTCACTAGTTGTTGGCCCCTGATCCCTAGATGATCTGTTGTCTGTGTTCCGTTACTTGTCTCATATGTAATAATCCTTGATGAAATTTCCTTTGTTTATTTTACAGTTTGCTATATCTAATAATGTTGAACTTACAGGAAATTTTCTCGAGGGAATCATTCATTAACACACGTGCACAGCCGGAGGATGTCATTGAAGGTTGGCGTCCTAAAGTAGAGGGTTGA

Protein sequence

>MS.gene04939.t1

MSTVRIQVSACALSATVNHLRYRPSYAVSTSSFNNGFSIKPLRVLMSSAPPSEPLEVAVKASLTTPNKIGDCPFSQRVLLTLEEKHLPYEPKLVDLRNKPEWFLEISPEGKVPVINFDGKWVADSDLITQTLEEKYPSPPLVTPPEKATAGSKIFSTFIGFLKSKDPNDGTEQALLNELSSFNDYLKENGPFINGKDISAADLSLGPKLYHLEIALGHYKKWTVPDSLTFLKSYLKEIFSRESFINTRAQPEDVIEGWRPKVEG