Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09957.t1 | XP_003611279.1 | 95.9 | 290 | 8 | 2 | 1 | 286 | 1 | 290 | 1.00E-150 | 542.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09957.t1 | G7JW04 | 95.9 | 290 | 8 | 2 | 1 | 286 | 1 | 290 | 7.2e-151 | 542.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene09957 | 0.819692 | 1.02E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene09957 | 0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene059006 | MS.gene09957 | 0.803965 | 2.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09957.t1 | MTR_5g012220 | 95.862 | 290 | 8 | 2 | 1 | 286 | 1 | 290 | 0.0 | 564 |
| MS.gene09957.t1 | MTR_4g101450 | 66.667 | 291 | 76 | 8 | 1 | 286 | 1 | 275 | 1.19e-119 | 344 |
| MS.gene09957.t1 | MTR_1g024980 | 39.614 | 207 | 101 | 7 | 101 | 286 | 198 | 401 | 1.05e-35 | 132 |
| MS.gene09957.t1 | MTR_3g072920 | 37.674 | 215 | 100 | 8 | 101 | 285 | 240 | 450 | 1.21e-32 | 125 |
| MS.gene09957.t1 | MTR_4g081420 | 34.375 | 224 | 94 | 7 | 101 | 285 | 227 | 436 | 1.22e-30 | 119 |
| MS.gene09957.t1 | MTR_3g463270 | 37.963 | 216 | 98 | 7 | 101 | 284 | 176 | 387 | 1.27e-29 | 115 |
| MS.gene09957.t1 | MTR_2g010860 | 31.111 | 225 | 99 | 8 | 101 | 285 | 168 | 376 | 2.39e-21 | 92.8 |
| MS.gene09957.t1 | MTR_2g010870 | 34.545 | 220 | 107 | 8 | 101 | 285 | 138 | 355 | 8.08e-21 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09957.t1 | AT1G62520 | 55.892 | 297 | 103 | 6 | 1 | 286 | 1 | 280 | 1.71e-96 | 285 |
| MS.gene09957.t1 | AT4G22560 | 53.425 | 292 | 102 | 9 | 1 | 286 | 1 | 264 | 4.26e-88 | 263 |
| MS.gene09957.t1 | AT4G12450 | 50.000 | 300 | 113 | 7 | 1 | 286 | 1 | 277 | 6.34e-83 | 251 |
| MS.gene09957.t1 | AT4G27240 | 40.094 | 212 | 99 | 6 | 101 | 285 | 220 | 430 | 6.33e-31 | 120 |
| MS.gene09957.t1 | AT5G54630 | 37.156 | 218 | 103 | 6 | 101 | 285 | 255 | 471 | 7.35e-30 | 117 |
| MS.gene09957.t1 | AT2G29660 | 36.957 | 230 | 91 | 9 | 101 | 284 | 150 | 371 | 2.52e-28 | 112 |
| MS.gene09957.t1 | AT1G75710 | 32.773 | 238 | 102 | 8 | 101 | 286 | 228 | 459 | 8.06e-28 | 112 |
| MS.gene09957.t1 | AT4G27240 | 40.000 | 185 | 89 | 5 | 101 | 264 | 220 | 403 | 6.08e-24 | 100 |
Find 98 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGTTTGGGACCCACTTC+TGG | 0.228821 | 5.2:-4606515 | MS.gene09957:CDS |
| TGTGCTTCTTGAACGGTTTA+TGG | 0.289550 | 5.2:+4606835 | None:intergenic |
| ACCCAAACCGTTTGCGGGTC+GGG | 0.301222 | 5.2:-4606684 | MS.gene09957:CDS |
| GCTTGTGTGGGGTCGTTTCC+AGG | 0.316873 | 5.2:-4606473 | MS.gene09957:CDS |
| CTCCTCATGGTTCCTCGACC+CGG | 0.330062 | 5.2:+4606580 | None:intergenic |
| GTAAACATCTTCAAATGCTT+TGG | 0.334000 | 5.2:+4607018 | None:intergenic |
| AGTGATGAGGTTTCATTGTT+TGG | 0.348388 | 5.2:-4606528 | MS.gene09957:CDS |
| AACCCGACCCGCAAACGGTT+TGG | 0.361036 | 5.2:+4606682 | None:intergenic |
| AGGGTTTGTGGATTCGTTGT+TGG | 0.361387 | 5.2:-4606321 | MS.gene09957:CDS |
| ACCCGACCCGCAAACGGTTT+GGG | 0.370093 | 5.2:+4606683 | None:intergenic |
| TTCGAAGCGGGTAGGGTTTG+TGG | 0.380582 | 5.2:-4606333 | MS.gene09957:CDS |
| ATGGTTCCTCGACCCGGGTT+GGG | 0.387318 | 5.2:+4606586 | None:intergenic |
| GATAATCTTTCACACTAGTT+GGG | 0.396532 | 5.2:-4606708 | MS.gene09957:CDS |
| TGGGGACCCAAACCGTTTGC+GGG | 0.398572 | 5.2:-4606689 | MS.gene09957:CDS |
| TGTTGTTATGGCTGGTGGGT+GGG | 0.398664 | 5.2:-4607062 | None:intergenic |
| GTGATGAGGTTTCATTGTTT+GGG | 0.398926 | 5.2:-4606527 | MS.gene09957:CDS |
| CCCTACGGTGGAGCTTGTGT+GGG | 0.404750 | 5.2:-4606485 | MS.gene09957:CDS |
| CGTTGTTGGATGGACGAGTT+GGG | 0.407087 | 5.2:-4606307 | MS.gene09957:CDS |
| GTTTATGGTAGTTTCAAAAT+CGG | 0.417278 | 5.2:+4606850 | None:intergenic |
| AGATAATCTTTCACACTAGT+TGG | 0.417289 | 5.2:-4606709 | MS.gene09957:CDS |
| AAGGGCTATGTTGGTTTGTC+GGG | 0.421378 | 5.2:-4606372 | MS.gene09957:CDS |
| ATCTCCACCACATTCCTTGA+AGG | 0.423726 | 5.2:+4606728 | None:intergenic |
| CATGGTTCCTCGACCCGGGT+TGG | 0.429191 | 5.2:+4606585 | None:intergenic |
| CTCATGTGCTCCACCGCTGC+CGG | 0.432603 | 5.2:+4606418 | None:intergenic |
| GAAGGGCTATGTTGGTTTGT+CGG | 0.434234 | 5.2:-4606373 | MS.gene09957:CDS |
| GACTCGGTGAGTGGTGATAA+TGG | 0.435923 | 5.2:-4606281 | MS.gene09957:CDS |
| GTTTCCAGGTGGGAAAGGTT+CGG | 0.438560 | 5.2:-4606459 | MS.gene09957:CDS |
| TTGGGGACCCAAACCGTTTG+CGG | 0.438771 | 5.2:-4606690 | MS.gene09957:CDS |
| CGAAATATTATTCCGGTTGG+TGG | 0.441912 | 5.2:+4606805 | None:intergenic |
| TTAATGAAGGTCATCCTTCA+AGG | 0.453362 | 5.2:-4606742 | MS.gene09957:CDS |
| GAGAGTTCCGGTGGTGGTAG+AGG | 0.460397 | 5.2:-4606398 | MS.gene09957:CDS |
| TTGTCGGGTCATAGCGGGTA+GGG | 0.463168 | 5.2:-4606357 | MS.gene09957:CDS |
| GGTGGAGCACATGAGAGTTC+CGG | 0.463301 | 5.2:-4606410 | MS.gene09957:CDS |
| TGGTGATAATGGTGAGTTGT+TGG | 0.464789 | 5.2:-4606270 | MS.gene09957:CDS |
| TTGTTGTTATGGCTGGTGGG+TGG | 0.471689 | 5.2:-4607063 | None:intergenic |
| ACGGCATCGAAATATTATTC+CGG | 0.472801 | 5.2:+4606798 | None:intergenic |
| TTTGTCGGGTCATAGCGGGT+AGG | 0.473834 | 5.2:-4606358 | MS.gene09957:CDS |
| CACACCTTGCATTCTCCTCA+TGG | 0.473982 | 5.2:+4606567 | None:intergenic |
| GACCCAAACCGTTTGCGGGT+CGG | 0.474386 | 5.2:-4606685 | MS.gene09957:CDS |
| TCCTCATGGTTCCTCGACCC+GGG | 0.476091 | 5.2:+4606581 | None:intergenic |
| GGTAGGGTTTCGAAGCGGGT+AGG | 0.482433 | 5.2:-4606341 | MS.gene09957:CDS |
| AGAGAAGAGAAACGTGGGTC+CGG | 0.483126 | 5.2:+4606773 | None:intergenic |
| TAGAGGAAGAAGGGCTATGT+TGG | 0.483392 | 5.2:-4606381 | MS.gene09957:CDS |
| TCCCTACGGTGGAGCTTGTG+TGG | 0.487032 | 5.2:-4606486 | MS.gene09957:CDS |
| GGGTCGTTTCCAGGTGGGAA+AGG | 0.487990 | 5.2:-4606464 | MS.gene09957:CDS |
| TAATATTTCGATGCCGTCAC+CGG | 0.489394 | 5.2:-4606792 | MS.gene09957:CDS |
| GTAGGGTTTCGAAGCGGGTA+GGG | 0.492035 | 5.2:-4606340 | MS.gene09957:CDS |
| AGCGGGTAGGGTTTCGAAGC+GGG | 0.501775 | 5.2:-4606345 | MS.gene09957:CDS |
| TTGGTTTGTCGGGTCATAGC+GGG | 0.503925 | 5.2:-4606362 | MS.gene09957:CDS |
| ATCTCAACCCGACCCGCAAA+CGG | 0.507441 | 5.2:+4606677 | None:intergenic |
| GCACAAACTCAACCACCAAC+CGG | 0.509332 | 5.2:-4606817 | MS.gene09957:CDS |
| TTGGGACCCACTTCTGGTGG+TGG | 0.510353 | 5.2:-4606509 | MS.gene09957:CDS |
| TCGTTGTTGGATGGACGAGT+TGG | 0.513717 | 5.2:-4606308 | MS.gene09957:CDS |
| ACTTCTGGTGGTGGTCCCTA+CGG | 0.521381 | 5.2:-4606500 | MS.gene09957:CDS |
| CCCACGTTTCTCTTCTCTCA+CGG | 0.532875 | 5.2:-4606768 | MS.gene09957:CDS |
| TGAAAACCCAACCCGGGTCG+AGG | 0.534115 | 5.2:-4606592 | MS.gene09957:CDS |
| TTTGTGGATTCGTTGTTGGA+TGG | 0.534647 | 5.2:-4606317 | MS.gene09957:CDS |
| GAGAAACGTGGGTCCGGTGA+CGG | 0.545198 | 5.2:+4606779 | None:intergenic |
| CATCGAAATATTATTCCGGT+TGG | 0.548232 | 5.2:+4606802 | None:intergenic |
| TTGAGTTTGTGCTTCTTGAA+CGG | 0.549453 | 5.2:+4606828 | None:intergenic |
| GCCGCCGAACCTTTCCCACC+TGG | 0.550223 | 5.2:+4606455 | None:intergenic |
| GTGTGGGGTCGTTTCCAGGT+GGG | 0.566405 | 5.2:-4606469 | MS.gene09957:CDS |
| TCTCTCACGGAGCTTAATGA+AGG | 0.572488 | 5.2:-4606755 | MS.gene09957:CDS |
| CCTTCTTCCTCTACCACCAC+CGG | 0.573313 | 5.2:+4606391 | None:intergenic |
| CCCACACAAGCTCCACCGTA+GGG | 0.579037 | 5.2:+4606485 | None:intergenic |
| CCGGTGGTGGTAGAGGAAGA+AGG | 0.582346 | 5.2:-4606391 | MS.gene09957:CDS |
| AATGCAAGGTGTGTTGCGGA+TGG | 0.588283 | 5.2:-4606557 | MS.gene09957:CDS |
| GCACATGAGAGTTCCGGTGG+TGG | 0.588850 | 5.2:-4606404 | MS.gene09957:CDS |
| ATAATCTTTCACACTAGTTG+GGG | 0.589146 | 5.2:-4606707 | MS.gene09957:CDS |
| CTATAAATGATAAGAAAACA+AGG | 0.599360 | 5.2:+4606224 | None:intergenic |
| GAAACGGTGAAAACCCAACC+CGG | 0.600453 | 5.2:-4606599 | MS.gene09957:CDS |
| CGGTGGTGGTAGAGGAAGAA+GGG | 0.604170 | 5.2:-4606390 | MS.gene09957:CDS |
| GTTTGAAGAGTATCGCGAAA+CGG | 0.606536 | 5.2:-4606615 | MS.gene09957:CDS |
| ATGGTTCAAGAACGGTGACT+CGG | 0.611808 | 5.2:-4606637 | MS.gene09957:CDS |
| TGTGTGGGGTCGTTTCCAGG+TGG | 0.612180 | 5.2:-4606470 | MS.gene09957:CDS |
| GTAGGGACCACCACCAGAAG+TGG | 0.616997 | 5.2:+4606502 | None:intergenic |
| CCCCACACAAGCTCCACCGT+AGG | 0.618087 | 5.2:+4606484 | None:intergenic |
| TGTTTGGGACCCACTTCTGG+TGG | 0.623982 | 5.2:-4606512 | MS.gene09957:CDS |
| TCTGGTGGTGGTCCCTACGG+TGG | 0.625406 | 5.2:-4606497 | MS.gene09957:CDS |
| TCCAGGTGGGAAAGGTTCGG+CGG | 0.625704 | 5.2:-4606456 | MS.gene09957:CDS |
| CGGATGGGAATGAAGTGATG+AGG | 0.625916 | 5.2:-4606541 | MS.gene09957:CDS |
| GGAGCACATGAGAGTTCCGG+TGG | 0.627301 | 5.2:-4606407 | MS.gene09957:CDS |
| TCATCCTTCAAGGAATGTGG+TGG | 0.632490 | 5.2:-4606732 | MS.gene09957:CDS |
| AGGTCATCCTTCAAGGAATG+TGG | 0.641561 | 5.2:-4606735 | MS.gene09957:CDS |
| ATGCAAGGTGTGTTGCGGAT+GGG | 0.645575 | 5.2:-4606556 | MS.gene09957:CDS |
| GGTTCACAATGGTTCAAGAA+CGG | 0.647332 | 5.2:-4606645 | MS.gene09957:CDS |
| GTTGGTTTGTCGGGTCATAG+CGG | 0.647807 | 5.2:-4606363 | MS.gene09957:CDS |
| GGAACCATGAGGAGAATGCA+AGG | 0.648204 | 5.2:-4606571 | MS.gene09957:CDS |
| CCTACGGTGGAGCTTGTGTG+GGG | 0.648346 | 5.2:-4606484 | MS.gene09957:CDS |
| AAACGGTGAAAACCCAACCC+GGG | 0.661312 | 5.2:-4606598 | MS.gene09957:CDS |
| TAGGGACCACCACCAGAAGT+GGG | 0.662068 | 5.2:+4606503 | None:intergenic |
| GGAGAATGCAAGGTGTGTTG+CGG | 0.683843 | 5.2:-4606561 | MS.gene09957:CDS |
| GTTGGGATTGACTCGGTGAG+TGG | 0.684359 | 5.2:-4606290 | MS.gene09957:CDS |
| CCGTGAGAGAAGAGAAACGT+GGG | 0.690837 | 5.2:+4606768 | None:intergenic |
| TCCGTGAGAGAAGAGAAACG+TGG | 0.707164 | 5.2:+4606767 | None:intergenic |
| TGGACGAGTTGGGATTGACT+CGG | 0.715365 | 5.2:-4606297 | MS.gene09957:CDS |
| TAGCGGGTAGGGTTTCGAAG+CGG | 0.715503 | 5.2:-4606346 | MS.gene09957:CDS |
| ACCCGGGTCGAGGAACCATG+AGG | 0.720452 | 5.2:-4606582 | MS.gene09957:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATAAATGATAAGAAAACA+AGG | + | chr5.2:4607051-4607070 | None:intergenic | 20.0% |
| !!! | CTTGTTTTCTTATCATTTAT+AGG | - | chr5.2:4607049-4607068 | MS.gene09957:CDS | 20.0% |
| ! | GTTTATGGTAGTTTCAAAAT+CGG | + | chr5.2:4606425-4606444 | None:intergenic | 25.0% |
| !!! | GTATTCTGTTTTTTGTGTTT+GGG | + | chr5.2:4606282-4606301 | None:intergenic | 25.0% |
| !!! | TGTATTCTGTTTTTTGTGTT+TGG | + | chr5.2:4606283-4606302 | None:intergenic | 25.0% |
| AGATAATCTTTCACACTAGT+TGG | - | chr5.2:4606563-4606582 | MS.gene09957:CDS | 30.0% | |
| ATAATCTTTCACACTAGTTG+GGG | - | chr5.2:4606565-4606584 | MS.gene09957:CDS | 30.0% | |
| GATAATCTTTCACACTAGTT+GGG | - | chr5.2:4606564-4606583 | MS.gene09957:CDS | 30.0% | |
| GTAAACATCTTCAAATGCTT+TGG | + | chr5.2:4606257-4606276 | None:intergenic | 30.0% | |
| !! | ATGATTTTCAAGGTTCACAA+TGG | - | chr5.2:4606616-4606635 | MS.gene09957:CDS | 30.0% |
| !! | GAACTATGATGTTTTTGAAG+CGG | + | chr5.2:4606382-4606401 | None:intergenic | 30.0% |
| !!! | ATGTTTTTGAAGCGGTTTTT+TGG | + | chr5.2:4606374-4606393 | None:intergenic | 30.0% |
| AGTGATGAGGTTTCATTGTT+TGG | - | chr5.2:4606744-4606763 | MS.gene09957:CDS | 35.0% | |
| CATCGAAATATTATTCCGGT+TGG | + | chr5.2:4606473-4606492 | None:intergenic | 35.0% | |
| GTGATGAGGTTTCATTGTTT+GGG | - | chr5.2:4606745-4606764 | MS.gene09957:CDS | 35.0% | |
| TTAATGAAGGTCATCCTTCA+AGG | - | chr5.2:4606530-4606549 | MS.gene09957:CDS | 35.0% | |
| TTGAGTTTGTGCTTCTTGAA+CGG | + | chr5.2:4606447-4606466 | None:intergenic | 35.0% | |
| ! | ACGGCATCGAAATATTATTC+CGG | + | chr5.2:4606477-4606496 | None:intergenic | 35.0% |
| !!! | TGAAGCGGTTTTTTGGATTT+AGG | + | chr5.2:4606367-4606386 | None:intergenic | 35.0% |
| CGAAATATTATTCCGGTTGG+TGG | + | chr5.2:4606470-4606489 | None:intergenic | 40.0% | |
| GGTTCACAATGGTTCAAGAA+CGG | - | chr5.2:4606627-4606646 | MS.gene09957:CDS | 40.0% | |
| TAATATTTCGATGCCGTCAC+CGG | - | chr5.2:4606480-4606499 | MS.gene09957:CDS | 40.0% | |
| TGTGCTTCTTGAACGGTTTA+TGG | + | chr5.2:4606440-4606459 | None:intergenic | 40.0% | |
| TTTGTGGATTCGTTGTTGGA+TGG | - | chr5.2:4606955-4606974 | MS.gene09957:CDS | 40.0% | |
| !! | GTTTGAAGAGTATCGCGAAA+CGG | - | chr5.2:4606657-4606676 | MS.gene09957:CDS | 40.0% |
| !! | TGGTGATAATGGTGAGTTGT+TGG | - | chr5.2:4607002-4607021 | MS.gene09957:CDS | 40.0% |
| !!! | TCGGGTTGAGATGATTTTCA+AGG | - | chr5.2:4606606-4606625 | MS.gene09957:CDS | 40.0% |
| AGGGTTTGTGGATTCGTTGT+TGG | - | chr5.2:4606951-4606970 | MS.gene09957:CDS | 45.0% | |
| AGGTCATCCTTCAAGGAATG+TGG | - | chr5.2:4606537-4606556 | MS.gene09957:CDS | 45.0% | |
| ATCTCCACCACATTCCTTGA+AGG | + | chr5.2:4606547-4606566 | None:intergenic | 45.0% | |
| ATGGTTCAAGAACGGTGACT+CGG | - | chr5.2:4606635-4606654 | MS.gene09957:CDS | 45.0% | |
| TAGAGGAAGAAGGGCTATGT+TGG | - | chr5.2:4606891-4606910 | MS.gene09957:CDS | 45.0% | |
| TCATCCTTCAAGGAATGTGG+TGG | - | chr5.2:4606540-4606559 | MS.gene09957:CDS | 45.0% | |
| TCTCTCACGGAGCTTAATGA+AGG | - | chr5.2:4606517-4606536 | MS.gene09957:CDS | 45.0% | |
| !! | AAGGGCTATGTTGGTTTGTC+GGG | - | chr5.2:4606900-4606919 | MS.gene09957:CDS | 45.0% |
| !! | GAAGGGCTATGTTGGTTTGT+CGG | - | chr5.2:4606899-4606918 | MS.gene09957:CDS | 45.0% |
| AAACGGTGAAAACCCAACCC+GGG | - | chr5.2:4606674-4606693 | MS.gene09957:CDS | 50.0% | |
| AATGCAAGGTGTGTTGCGGA+TGG | - | chr5.2:4606715-4606734 | MS.gene09957:CDS | 50.0% | |
| AGAGAAGAGAAACGTGGGTC+CGG | + | chr5.2:4606502-4606521 | None:intergenic | 50.0% | |
| ATGCAAGGTGTGTTGCGGAT+GGG | - | chr5.2:4606716-4606735 | MS.gene09957:CDS | 50.0% | |
| CACACCTTGCATTCTCCTCA+TGG | + | chr5.2:4606708-4606727 | None:intergenic | 50.0% | |
| CCCACGTTTCTCTTCTCTCA+CGG | - | chr5.2:4606504-4606523 | MS.gene09957:CDS | 50.0% | |
| CCGTGAGAGAAGAGAAACGT+GGG | + | chr5.2:4606507-4606526 | None:intergenic | 50.0% | |
| CGGATGGGAATGAAGTGATG+AGG | - | chr5.2:4606731-4606750 | MS.gene09957:CDS | 50.0% | |
| CGTTGTTGGATGGACGAGTT+GGG | - | chr5.2:4606965-4606984 | MS.gene09957:CDS | 50.0% | |
| GAAACGGTGAAAACCCAACC+CGG | - | chr5.2:4606673-4606692 | MS.gene09957:CDS | 50.0% | |
| GCACAAACTCAACCACCAAC+CGG | - | chr5.2:4606455-4606474 | MS.gene09957:CDS | 50.0% | |
| GGAACCATGAGGAGAATGCA+AGG | - | chr5.2:4606701-4606720 | MS.gene09957:CDS | 50.0% | |
| GGAGAATGCAAGGTGTGTTG+CGG | - | chr5.2:4606711-4606730 | MS.gene09957:CDS | 50.0% | |
| GTTTCCAGGTGGGAAAGGTT+CGG | - | chr5.2:4606813-4606832 | MS.gene09957:CDS | 50.0% | |
| TCCGTGAGAGAAGAGAAACG+TGG | + | chr5.2:4606508-4606527 | None:intergenic | 50.0% | |
| TCGTTGTTGGATGGACGAGT+TGG | - | chr5.2:4606964-4606983 | MS.gene09957:CDS | 50.0% | |
| ! | ATCTGCACATTTTCCGGCAG+CGG | - | chr5.2:4606841-4606860 | MS.gene09957:CDS | 50.0% |
| ! | CATTGTTTGGGACCCACTTC+TGG | - | chr5.2:4606757-4606776 | MS.gene09957:CDS | 50.0% |
| ! | TGGACGAGTTGGGATTGACT+CGG | - | chr5.2:4606975-4606994 | MS.gene09957:CDS | 50.0% |
| !! | GACTCGGTGAGTGGTGATAA+TGG | - | chr5.2:4606991-4607010 | MS.gene09957:CDS | 50.0% |
| !! | GTTGGTTTGTCGGGTCATAG+CGG | - | chr5.2:4606909-4606928 | MS.gene09957:CDS | 50.0% |
| !! | TTGGTTTGTCGGGTCATAGC+GGG | - | chr5.2:4606910-4606929 | MS.gene09957:CDS | 50.0% |
| ATCTCAACCCGACCCGCAAA+CGG | + | chr5.2:4606598-4606617 | None:intergenic | 55.0% | |
| CCTTCTTCCTCTACCACCAC+CGG | + | chr5.2:4606884-4606903 | None:intergenic | 55.0% | |
| GGTGGAGCACATGAGAGTTC+CGG | - | chr5.2:4606862-4606881 | MS.gene09957:CDS | 55.0% | |
| GTAGGGTTTCGAAGCGGGTA+GGG | - | chr5.2:4606932-4606951 | MS.gene09957:CDS | 55.0% | |
| TAGGGACCACCACCAGAAGT+GGG | + | chr5.2:4606772-4606791 | None:intergenic | 55.0% | |
| TTCGAAGCGGGTAGGGTTTG+TGG | - | chr5.2:4606939-4606958 | MS.gene09957:CDS | 55.0% | |
| TTGGGGACCCAAACCGTTTG+CGG | - | chr5.2:4606582-4606601 | MS.gene09957:CDS | 55.0% | |
| ! | CGGTGGTGGTAGAGGAAGAA+GGG | - | chr5.2:4606882-4606901 | MS.gene09957:CDS | 55.0% |
| ! | GCGGCGATCTGCACATTTTC+CGG | - | chr5.2:4606835-4606854 | MS.gene09957:CDS | 55.0% |
| ! | TAGCGGGTAGGGTTTCGAAG+CGG | - | chr5.2:4606926-4606945 | MS.gene09957:CDS | 55.0% |
| ! | TGTTTGGGACCCACTTCTGG+TGG | - | chr5.2:4606760-4606779 | MS.gene09957:CDS | 55.0% |
| !! | ACTTCTGGTGGTGGTCCCTA+CGG | - | chr5.2:4606772-4606791 | MS.gene09957:CDS | 55.0% |
| !! | GTTGGGATTGACTCGGTGAG+TGG | - | chr5.2:4606982-4607001 | MS.gene09957:CDS | 55.0% |
| !! | TTGTCGGGTCATAGCGGGTA+GGG | - | chr5.2:4606915-4606934 | MS.gene09957:CDS | 55.0% |
| !! | TTTGTCGGGTCATAGCGGGT+AGG | - | chr5.2:4606914-4606933 | MS.gene09957:CDS | 55.0% |
| AACCCGACCCGCAAACGGTT+TGG | + | chr5.2:4606593-4606612 | None:intergenic | 60.0% | |
| ACCCAAACCGTTTGCGGGTC+GGG | - | chr5.2:4606588-4606607 | MS.gene09957:CDS | 60.0% | |
| ACCCGACCCGCAAACGGTTT+GGG | + | chr5.2:4606592-4606611 | None:intergenic | 60.0% | |
| AGCGGGTAGGGTTTCGAAGC+GGG | - | chr5.2:4606927-4606946 | MS.gene09957:CDS | 60.0% | |
| ATGGTTCCTCGACCCGGGTT+GGG | + | chr5.2:4606689-4606708 | None:intergenic | 60.0% | |
| CCCACACAAGCTCCACCGTA+GGG | + | chr5.2:4606790-4606809 | None:intergenic | 60.0% | |
| CCCTACGGTGGAGCTTGTGT+GGG | - | chr5.2:4606787-4606806 | MS.gene09957:CDS | 60.0% | |
| CCTACGGTGGAGCTTGTGTG+GGG | - | chr5.2:4606788-4606807 | MS.gene09957:CDS | 60.0% | |
| CTCCTCATGGTTCCTCGACC+CGG | + | chr5.2:4606695-4606714 | None:intergenic | 60.0% | |
| GACCCAAACCGTTTGCGGGT+CGG | - | chr5.2:4606587-4606606 | MS.gene09957:CDS | 60.0% | |
| GAGAAACGTGGGTCCGGTGA+CGG | + | chr5.2:4606496-4606515 | None:intergenic | 60.0% | |
| GCACATGAGAGTTCCGGTGG+TGG | - | chr5.2:4606868-4606887 | MS.gene09957:CDS | 60.0% | |
| GCTTGTGTGGGGTCGTTTCC+AGG | - | chr5.2:4606799-4606818 | MS.gene09957:CDS | 60.0% | |
| GGAGCACATGAGAGTTCCGG+TGG | - | chr5.2:4606865-4606884 | MS.gene09957:CDS | 60.0% | |
| GGGTCGTTTCCAGGTGGGAA+AGG | - | chr5.2:4606808-4606827 | MS.gene09957:CDS | 60.0% | |
| GGTAGGGTTTCGAAGCGGGT+AGG | - | chr5.2:4606931-4606950 | MS.gene09957:CDS | 60.0% | |
| GTAGGGACCACCACCAGAAG+TGG | + | chr5.2:4606773-4606792 | None:intergenic | 60.0% | |
| GTGTGGGGTCGTTTCCAGGT+GGG | - | chr5.2:4606803-4606822 | MS.gene09957:CDS | 60.0% | |
| TCCAGGTGGGAAAGGTTCGG+CGG | - | chr5.2:4606816-4606835 | MS.gene09957:CDS | 60.0% | |
| TCCCTACGGTGGAGCTTGTG+TGG | - | chr5.2:4606786-4606805 | MS.gene09957:CDS | 60.0% | |
| TCCTCATGGTTCCTCGACCC+GGG | + | chr5.2:4606694-4606713 | None:intergenic | 60.0% | |
| TGAAAACCCAACCCGGGTCG+AGG | - | chr5.2:4606680-4606699 | MS.gene09957:CDS | 60.0% | |
| TGGGGACCCAAACCGTTTGC+GGG | - | chr5.2:4606583-4606602 | MS.gene09957:CDS | 60.0% | |
| TGTGTGGGGTCGTTTCCAGG+TGG | - | chr5.2:4606802-4606821 | MS.gene09957:CDS | 60.0% | |
| TTGGGACCCACTTCTGGTGG+TGG | - | chr5.2:4606763-4606782 | MS.gene09957:CDS | 60.0% | |
| ! | CCGGTGGTGGTAGAGGAAGA+AGG | - | chr5.2:4606881-4606900 | MS.gene09957:CDS | 60.0% |
| ! | GAGAGTTCCGGTGGTGGTAG+AGG | - | chr5.2:4606874-4606893 | MS.gene09957:CDS | 60.0% |
| ! | TGCACATTTTCCGGCAGCGG+TGG | - | chr5.2:4606844-4606863 | MS.gene09957:CDS | 60.0% |
| ACCCGGGTCGAGGAACCATG+AGG | - | chr5.2:4606690-4606709 | MS.gene09957:CDS | 65.0% | |
| CATGGTTCCTCGACCCGGGT+TGG | + | chr5.2:4606690-4606709 | None:intergenic | 65.0% | |
| CCCCACACAAGCTCCACCGT+AGG | + | chr5.2:4606791-4606810 | None:intergenic | 65.0% | |
| CTCATGTGCTCCACCGCTGC+CGG | + | chr5.2:4606857-4606876 | None:intergenic | 65.0% | |
| !! | TCTGGTGGTGGTCCCTACGG+TGG | - | chr5.2:4606775-4606794 | MS.gene09957:CDS | 65.0% |
| GCCGCCGAACCTTTCCCACC+TGG | + | chr5.2:4606820-4606839 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 4606217 | 4607077 | 4606217 | ID=MS.gene09957 |
| chr5.2 | mRNA | 4606217 | 4607077 | 4606217 | ID=MS.gene09957.t1;Parent=MS.gene09957 |
| chr5.2 | exon | 4606217 | 4607077 | 4606217 | ID=MS.gene09957.t1.exon1;Parent=MS.gene09957.t1 |
| chr5.2 | CDS | 4606217 | 4607077 | 4606217 | ID=cds.MS.gene09957.t1;Parent=MS.gene09957.t1 |
| Gene Sequence |
| Protein sequence |
