Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05215.t1 | RHN52554.1 | 87.4 | 436 | 42 | 3 | 1 | 432 | 1 | 427 | 6.50E-178 | 633.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05215.t1 | O81242 | 48.0 | 377 | 161 | 7 | 1 | 364 | 1 | 355 | 2.6e-74 | 280.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05215.t1 | A0A396HKZ0 | 87.4 | 436 | 42 | 3 | 1 | 432 | 1 | 427 | 4.7e-178 | 633.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene05215 | 0.82903 | 6.47E-55 | -1.69E-46 |
| MS.gene050442 | MS.gene05215 | 0.816636 | 4.99E-52 | -1.69E-46 |
| MS.gene050759 | MS.gene05215 | 0.833331 | 5.67E-56 | -1.69E-46 |
| MS.gene050962 | MS.gene05215 | 0.827433 | 1.57E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene05215 | 0.807185 | 5.72E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene05215 | 0.825338 | 4.95E-54 | -1.69E-46 |
| MS.gene05215 | MS.gene052665 | 0.808152 | 3.56E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene053226 | 0.810456 | 1.14E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene055512 | 0.808979 | 2.37E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene055926 | 0.802278 | 6.05E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene057444 | 0.811169 | 8.01E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene057693 | 0.805835 | 1.10E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene057869 | 0.840209 | 9.98E-58 | -1.69E-46 |
| MS.gene05215 | MS.gene057915 | 0.804516 | 2.08E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene058010 | 0.806894 | 6.59E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene060802 | 0.812068 | 5.10E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene060803 | 0.819228 | 1.30E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene060998 | 0.808875 | 2.50E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene06236 | 0.810243 | 1.27E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene062564 | 0.803852 | 2.86E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene064070 | 0.801294 | 9.63E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene065347 | 0.806001 | 1.02E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene065825 | 0.824044 | 9.99E-54 | -1.69E-46 |
| MS.gene05215 | MS.gene066320 | 0.831939 | 1.26E-55 | -1.69E-46 |
| MS.gene05215 | MS.gene066436 | 0.817086 | 3.96E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene06697 | 0.800208 | 1.61E-48 | -1.69E-46 |
| MS.gene05215 | MS.gene067450 | 0.816923 | 4.30E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene068238 | 0.809987 | 1.44E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene072561 | 0.826869 | 2.14E-54 | -1.69E-46 |
| MS.gene05215 | MS.gene073064 | 0.800029 | 1.75E-48 | -1.69E-46 |
| MS.gene05215 | MS.gene07344 | 0.832068 | 1.17E-55 | -1.69E-46 |
| MS.gene05215 | MS.gene073753 | 0.804062 | 2.59E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene074026 | 0.801642 | 8.18E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene07530 | 0.826713 | 2.33E-54 | -1.69E-46 |
| MS.gene05215 | MS.gene07532 | 0.812602 | 3.90E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene07566 | -0.803088 | 4.12E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene08577 | 0.808975 | 2.38E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene09051 | 0.803502 | 3.38E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene09957 | 0.800085 | 1.70E-48 | -1.69E-46 |
| MS.gene05215 | MS.gene23030 | 0.838995 | 2.06E-57 | -1.69E-46 |
| MS.gene05215 | MS.gene24268 | 0.818995 | 1.47E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene27302 | 0.810156 | 1.33E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene27571 | 0.817202 | 3.73E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene28498 | 0.812409 | 4.30E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene28709 | 0.803701 | 3.07E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene29022 | 0.82017 | 7.90E-53 | -1.69E-46 |
| MS.gene05215 | MS.gene29095 | 0.812359 | 4.41E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene29773 | 0.821205 | 4.57E-53 | -1.69E-46 |
| MS.gene05215 | MS.gene30114 | 0.802029 | 6.81E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene30739 | 0.814377 | 1.59E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene31283 | 0.808632 | 2.82E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene31652 | 0.805408 | 1.35E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene32555 | 0.800041 | 1.74E-48 | -1.69E-46 |
| MS.gene05215 | MS.gene33466 | 0.801618 | 8.27E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene35121 | 0.817036 | 4.06E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene35631 | 0.827009 | 1.98E-54 | -1.69E-46 |
| MS.gene05215 | MS.gene36453 | 0.807681 | 4.49E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene36569 | 0.800028 | 1.75E-48 | -1.69E-46 |
| MS.gene05215 | MS.gene37483 | 0.811502 | 6.78E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene37725 | 0.818109 | 2.33E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene40565 | 0.800134 | 1.66E-48 | -1.69E-46 |
| MS.gene05215 | MS.gene41679 | 0.828576 | 8.33E-55 | -1.69E-46 |
| MS.gene05215 | MS.gene42125 | 0.802951 | 4.40E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene42160 | 0.813794 | 2.14E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene43430 | 0.80702 | 6.20E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene45567 | 0.805308 | 1.42E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene45918 | 0.805734 | 1.16E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene45933 | 0.805732 | 1.16E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene46250 | 0.806188 | 9.29E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene49423 | 0.801839 | 7.45E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene50163 | 0.804705 | 1.90E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene50639 | 0.817059 | 4.01E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene50708 | 0.800064 | 1.72E-48 | -1.69E-46 |
| MS.gene05215 | MS.gene51818 | 0.804102 | 2.54E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene53064 | 0.818797 | 1.63E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene53586 | 0.812756 | 3.61E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene55396 | 0.816428 | 5.56E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene56562 | 0.802075 | 6.66E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene56717 | 0.801271 | 9.74E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene57832 | 0.822593 | 2.18E-53 | -1.69E-46 |
| MS.gene05215 | MS.gene58503 | 0.800294 | 1.54E-48 | -1.69E-46 |
| MS.gene05215 | MS.gene59948 | 0.814106 | 1.82E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene59949 | 0.824004 | 1.02E-53 | -1.69E-46 |
| MS.gene05215 | MS.gene60631 | 0.803077 | 4.14E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene62214 | 0.830469 | 2.89E-55 | -1.69E-46 |
| MS.gene05215 | MS.gene62393 | 0.813504 | 2.48E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene62682 | 0.809159 | 2.17E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene64249 | 0.805064 | 1.60E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene64417 | 0.81631 | 5.91E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene64671 | 0.800391 | 1.47E-48 | -1.69E-46 |
| MS.gene05215 | MS.gene66676 | 0.807534 | 4.82E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene69867 | 0.813247 | 2.82E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene70021 | 0.811605 | 6.44E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene71468 | 0.803199 | 3.91E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene72268 | 0.824643 | 7.22E-54 | -1.69E-46 |
| MS.gene05215 | MS.gene72400 | 0.829445 | 5.13E-55 | -1.69E-46 |
| MS.gene05215 | MS.gene76356 | 0.803415 | 3.52E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene77453 | 0.804374 | 2.23E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene78492 | 0.802517 | 5.40E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene78682 | 0.809777 | 1.60E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene81653 | 0.801445 | 8.97E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene82879 | 0.800309 | 1.53E-48 | -1.69E-46 |
| MS.gene05215 | MS.gene83056 | 0.806543 | 7.82E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene84454 | 0.829484 | 5.02E-55 | -1.69E-46 |
| MS.gene05215 | MS.gene85606 | 0.802956 | 4.39E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene86140 | 0.817765 | 2.78E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene86844 | 0.828361 | 9.38E-55 | -1.69E-46 |
| MS.gene05215 | MS.gene86973 | 0.816348 | 5.79E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene87669 | 0.814826 | 1.26E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene88380 | 0.816599 | 5.09E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene90760 | 0.802874 | 4.56E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene92383 | 0.802226 | 6.20E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene93654 | 0.806581 | 7.68E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene93656 | 0.803704 | 3.07E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene93716 | 0.818816 | 1.61E-52 | -1.69E-46 |
| MS.gene05215 | MS.gene95255 | 0.821856 | 3.23E-53 | -1.69E-46 |
| MS.gene05215 | MS.gene95698 | 0.822171 | 2.73E-53 | -1.69E-46 |
| MS.gene05215 | MS.gene96085 | 0.80637 | 8.50E-50 | -1.69E-46 |
| MS.gene05215 | MS.gene96215 | 0.803147 | 4.00E-49 | -1.69E-46 |
| MS.gene05215 | MS.gene96511 | -0.813936 | 1.99E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene98091 | 0.815173 | 1.06E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene98543 | 0.811361 | 7.28E-51 | -1.69E-46 |
| MS.gene05215 | MS.gene98717 | 0.822267 | 2.60E-53 | -1.69E-46 |
| MS.gene05215 | MS.gene99746 | 0.810119 | 1.35E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05215.t1 | MTR_6g077860 | 92.431 | 436 | 17 | 3 | 1 | 432 | 1 | 424 | 0.0 | 736 |
| MS.gene05215.t1 | MTR_6g077860 | 92.519 | 401 | 15 | 2 | 1 | 397 | 1 | 390 | 0.0 | 703 |
| MS.gene05215.t1 | MTR_6g077860 | 92.269 | 401 | 15 | 3 | 1 | 397 | 1 | 389 | 0.0 | 697 |
| MS.gene05215.t1 | MTR_6g077860 | 91.877 | 357 | 14 | 2 | 1 | 353 | 1 | 346 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05215.t1 | AT1G48380 | 50.843 | 356 | 141 | 8 | 22 | 364 | 21 | 355 | 9.23e-99 | 300 |
| MS.gene05215.t1 | AT1G48380 | 46.770 | 387 | 141 | 9 | 22 | 364 | 21 | 386 | 4.01e-92 | 283 |
Find 79 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGCGTTCTATGGTTTC+TGG | 0.031621 | 6.2:-77392685 | None:intergenic |
| AATTCTAGTTTGGCTTCTTC+TGG | 0.148826 | 6.2:-77395302 | None:intergenic |
| CAGGGTCGAATGAAGTTATT+TGG | 0.165215 | 6.2:+77394768 | MS.gene05215:intron |
| CAAACTGAACATGACTTTAA+AGG | 0.229485 | 6.2:+77395446 | MS.gene05215:CDS |
| AACCAGCAGGCTGCGACTTC+TGG | 0.236228 | 6.2:-77397968 | None:intergenic |
| GATTGGTGATCTTAAGGATT+TGG | 0.256759 | 6.2:+77392894 | MS.gene05215:CDS |
| ATTTCTTCTGGTGATGATTC+TGG | 0.283304 | 6.2:+77396178 | MS.gene05215:CDS |
| AGAGTCAAGTATCTATTCTT+TGG | 0.286324 | 6.2:-77394804 | None:intergenic |
| ACCAGCTCAAATATCCTTAT+AGG | 0.296418 | 6.2:+77396271 | MS.gene05215:CDS |
| ATTAATTGAACTTCTAGTTT+TGG | 0.297945 | 6.2:-77392749 | None:intergenic |
| TTTGAGTCTCTTGCGTTCTA+TGG | 0.301405 | 6.2:-77392692 | None:intergenic |
| CATCACGCTCTTTCCACCTT+TGG | 0.317633 | 6.2:-77394835 | None:intergenic |
| AAACTGAACATGACTTTAAA+GGG | 0.326016 | 6.2:+77395447 | MS.gene05215:CDS |
| TCCATGGGGAGTTGATCTTT+TGG | 0.326043 | 6.2:-77396627 | None:intergenic |
| ATTGGTGATCTTAAGGATTT+GGG | 0.333826 | 6.2:+77392895 | MS.gene05215:CDS |
| AAATATCCTTATAGGCATTT+CGG | 0.342412 | 6.2:+77396279 | MS.gene05215:CDS |
| TGGGAAGATTGGTGATCTTA+AGG | 0.343649 | 6.2:+77392888 | MS.gene05215:CDS |
| CTTAAAAGACACAACAGAAT+TGG | 0.355540 | 6.2:+77395592 | MS.gene05215:CDS |
| AGATTTGCTGAAATTTCTTC+TGG | 0.361470 | 6.2:+77396166 | MS.gene05215:intron |
| TTCCTTGGGAAATTCTAGTT+TGG | 0.364589 | 6.2:-77395312 | None:intergenic |
| TTTCGGATGCATGGTGGATT+GGG | 0.364946 | 6.2:+77395264 | MS.gene05215:CDS |
| TTTAGGATTCTGACGAAGAT+TGG | 0.368574 | 6.2:+77400176 | MS.gene05215:intron |
| TCTTGCGTTCTATGGTTTCT+GGG | 0.375719 | 6.2:-77392684 | None:intergenic |
| GGAATGCCGAAATGCCTATA+AGG | 0.376881 | 6.2:-77396285 | None:intergenic |
| ATTCTAGTTTGGCTTCTTCT+GGG | 0.378096 | 6.2:-77395301 | None:intergenic |
| TAAAAGCAGCCCCGACCTTT+CGG | 0.379893 | 6.2:+77396201 | MS.gene05215:CDS |
| TGATGGAGATTTATTTGAAT+TGG | 0.386109 | 6.2:-77397840 | None:intergenic |
| GCCTCTGGTGACTCTGGCTC+TGG | 0.396187 | 6.2:-77395533 | None:intergenic |
| CCTGGTTTGTTTGCTCCTGT+TGG | 0.398322 | 6.2:+77392862 | MS.gene05215:CDS |
| CCTGTTGGTGGTGGGAAGAT+TGG | 0.415955 | 6.2:+77392877 | MS.gene05215:CDS |
| CCTAACCTCATACAGTTCCT+TGG | 0.426084 | 6.2:-77395327 | None:intergenic |
| ATCCTCATTATTCAAGAAAG+TGG | 0.428728 | 6.2:+77396710 | MS.gene05215:CDS |
| GTTCTCGCTGACTGGCGAAC+TGG | 0.429471 | 6.2:-77395617 | None:intergenic |
| TTAGGATTCTGACGAAGATT+GGG | 0.441138 | 6.2:+77400177 | MS.gene05215:intron |
| TTGTTTGCTCCTGTTGGTGG+TGG | 0.441593 | 6.2:+77392868 | MS.gene05215:CDS |
| GGCCAGAAGTCGCAGCCTGC+TGG | 0.442610 | 6.2:+77397966 | MS.gene05215:CDS |
| AGAGGTGCCTCTGGTGACTC+TGG | 0.443093 | 6.2:-77395539 | None:intergenic |
| TCCATTGTTGCTAAACATCA+TGG | 0.444208 | 6.2:+77392784 | MS.gene05215:CDS |
| CTAACCTCATACAGTTCCTT+GGG | 0.447574 | 6.2:-77395326 | None:intergenic |
| ATTTCCCAAGGAACTGTATG+AGG | 0.450377 | 6.2:+77395322 | MS.gene05215:CDS |
| TTCTTCATGTTCCGAAAGGT+CGG | 0.450560 | 6.2:-77396212 | None:intergenic |
| TCTTCATGTTCCGAAAGGTC+GGG | 0.451041 | 6.2:-77396211 | None:intergenic |
| CACGTTGTTTGAAAATGCTA+AGG | 0.461867 | 6.2:-77392716 | None:intergenic |
| AGGGTCGAATGAAGTTATTT+GGG | 0.462249 | 6.2:+77394769 | MS.gene05215:intron |
| TTCGAAAAGAAAGATTGAAC+TGG | 0.467814 | 6.2:+77397989 | MS.gene05215:CDS |
| TTCCACTTTCTTGAATAATG+AGG | 0.470268 | 6.2:-77396712 | None:intergenic |
| CTTCATGTTCCGAAAGGTCG+GGG | 0.472553 | 6.2:-77396210 | None:intergenic |
| GGTTTGTTTGCTCCTGTTGG+TGG | 0.476301 | 6.2:+77392865 | MS.gene05215:CDS |
| GGTTTCTGGGTTTGTTGCGT+CGG | 0.482601 | 6.2:-77392671 | None:intergenic |
| CCAATCTTCCCACCACCAAC+AGG | 0.490076 | 6.2:-77392877 | None:intergenic |
| TCATCTTCAAGAGGTGCCTC+TGG | 0.492179 | 6.2:-77395548 | None:intergenic |
| ATTCAAGAAAGTGGAAGTAA+AGG | 0.493741 | 6.2:+77396719 | MS.gene05215:CDS |
| AATAAATCTCCATCATCAAA+AGG | 0.500680 | 6.2:+77397848 | MS.gene05215:CDS |
| TGTCTGTTGTTGTAGGATGA+AGG | 0.507312 | 6.2:+77398092 | MS.gene05215:intron |
| AGGATGAAGGACCCAAGAAA+AGG | 0.510584 | 6.2:+77398105 | MS.gene05215:intron |
| TCTTTACCTCGATTTCCCTC+AGG | 0.514638 | 6.2:+77392933 | MS.gene05215:CDS |
| TGTTTAGCAACAATGGAAGA+AGG | 0.516208 | 6.2:-77392778 | None:intergenic |
| GCCTATAAGGATATTTGAGC+TGG | 0.523542 | 6.2:-77396272 | None:intergenic |
| GGGAAATCGAGGTAAAGAAC+AGG | 0.529659 | 6.2:-77392928 | None:intergenic |
| GGATGAAGGACCCAAGAAAA+GGG | 0.530586 | 6.2:+77398106 | MS.gene05215:intron |
| GCAGCTTCTGTAGTTAATCA+TGG | 0.545893 | 6.2:+77395485 | MS.gene05215:CDS |
| CCAACAGGAGCAAACAAACC+AGG | 0.547608 | 6.2:-77392862 | None:intergenic |
| TGTTTGCTCCTGTTGGTGGT+GGG | 0.552278 | 6.2:+77392869 | MS.gene05215:CDS |
| GTTTAGCAACAATGGAAGAA+GGG | 0.563032 | 6.2:-77392777 | None:intergenic |
| ACCATGATGTTTAGCAACAA+TGG | 0.563611 | 6.2:-77392785 | None:intergenic |
| ACAAACCAGGAAACGAGAAA+AGG | 0.564488 | 6.2:-77392849 | None:intergenic |
| ACTCTACAGTTCTCCAAAGG+TGG | 0.579477 | 6.2:+77394822 | MS.gene05215:CDS |
| TCTGATAAATCATCTTCAAG+AGG | 0.593258 | 6.2:-77395557 | None:intergenic |
| GAAAAGGGCAAGAAAGACCA+AGG | 0.609681 | 6.2:+77398121 | MS.gene05215:CDS |
| TCCAAAAGATCAACTCCCCA+TGG | 0.637769 | 6.2:+77396626 | MS.gene05215:CDS |
| AGCCAAACTAGAATTTCCCA+AGG | 0.645110 | 6.2:+77395310 | MS.gene05215:CDS |
| AACTGAACATGACTTTAAAG+GGG | 0.647674 | 6.2:+77395448 | MS.gene05215:CDS |
| TGGAAAGAGCGTGATGTGTG+AGG | 0.647978 | 6.2:+77394842 | MS.gene05215:CDS |
| GAACAACCTGAGGGAAATCG+AGG | 0.649397 | 6.2:-77392939 | None:intergenic |
| TTGACTCTACAGTTCTCCAA+AGG | 0.655390 | 6.2:+77394819 | MS.gene05215:CDS |
| TCCAGAGCCAGAGTCACCAG+AGG | 0.679269 | 6.2:+77395532 | MS.gene05215:CDS |
| ACTGAACATGACTTTAAAGG+GGG | 0.698718 | 6.2:+77395449 | MS.gene05215:CDS |
| AGTTATTGACATTGACGATG+AGG | 0.704093 | 6.2:+77396596 | MS.gene05215:CDS |
| ATATTATTAAGAAATCTCAG+AGG | 0.780918 | 6.2:+77392812 | MS.gene05215:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 77392625 | 77400207 | 77392625 | ID=MS.gene05215 |
| chr6.2 | mRNA | 77392625 | 77400207 | 77392625 | ID=MS.gene05215.t1;Parent=MS.gene05215 |
| chr6.2 | exon | 77392625 | 77392954 | 77392625 | ID=MS.gene05215.t1.exon1;Parent=MS.gene05215.t1 |
| chr6.2 | CDS | 77392625 | 77392954 | 77392625 | ID=cds.MS.gene05215.t1;Parent=MS.gene05215.t1 |
| chr6.2 | exon | 77394771 | 77394881 | 77394771 | ID=MS.gene05215.t1.exon2;Parent=MS.gene05215.t1 |
| chr6.2 | CDS | 77394771 | 77394881 | 77394771 | ID=cds.MS.gene05215.t1;Parent=MS.gene05215.t1 |
| chr6.2 | exon | 77395257 | 77395343 | 77395257 | ID=MS.gene05215.t1.exon3;Parent=MS.gene05215.t1 |
| chr6.2 | CDS | 77395257 | 77395343 | 77395257 | ID=cds.MS.gene05215.t1;Parent=MS.gene05215.t1 |
| chr6.2 | exon | 77395440 | 77395657 | 77395440 | ID=MS.gene05215.t1.exon4;Parent=MS.gene05215.t1 |
| chr6.2 | CDS | 77395440 | 77395657 | 77395440 | ID=cds.MS.gene05215.t1;Parent=MS.gene05215.t1 |
| chr6.2 | exon | 77396168 | 77396308 | 77396168 | ID=MS.gene05215.t1.exon5;Parent=MS.gene05215.t1 |
| chr6.2 | CDS | 77396168 | 77396308 | 77396168 | ID=cds.MS.gene05215.t1;Parent=MS.gene05215.t1 |
| chr6.2 | exon | 77396578 | 77396740 | 77396578 | ID=MS.gene05215.t1.exon6;Parent=MS.gene05215.t1 |
| chr6.2 | CDS | 77396578 | 77396740 | 77396578 | ID=cds.MS.gene05215.t1;Parent=MS.gene05215.t1 |
| chr6.2 | exon | 77397830 | 77397869 | 77397830 | ID=MS.gene05215.t1.exon7;Parent=MS.gene05215.t1 |
| chr6.2 | CDS | 77397830 | 77397869 | 77397830 | ID=cds.MS.gene05215.t1;Parent=MS.gene05215.t1 |
| chr6.2 | exon | 77397961 | 77398010 | 77397961 | ID=MS.gene05215.t1.exon8;Parent=MS.gene05215.t1 |
| chr6.2 | CDS | 77397961 | 77398010 | 77397961 | ID=cds.MS.gene05215.t1;Parent=MS.gene05215.t1 |
| chr6.2 | exon | 77398107 | 77398155 | 77398107 | ID=MS.gene05215.t1.exon9;Parent=MS.gene05215.t1 |
| chr6.2 | CDS | 77398107 | 77398155 | 77398107 | ID=cds.MS.gene05215.t1;Parent=MS.gene05215.t1 |
| chr6.2 | exon | 77398625 | 77398659 | 77398625 | ID=MS.gene05215.t1.exon10;Parent=MS.gene05215.t1 |
| chr6.2 | CDS | 77398625 | 77398659 | 77398625 | ID=cds.MS.gene05215.t1;Parent=MS.gene05215.t1 |
| chr6.2 | exon | 77399982 | 77400029 | 77399982 | ID=MS.gene05215.t1.exon11;Parent=MS.gene05215.t1 |
| chr6.2 | CDS | 77399982 | 77400029 | 77399982 | ID=cds.MS.gene05215.t1;Parent=MS.gene05215.t1 |
| chr6.2 | exon | 77400181 | 77400207 | 77400181 | ID=MS.gene05215.t1.exon12;Parent=MS.gene05215.t1 |
| chr6.2 | CDS | 77400181 | 77400207 | 77400181 | ID=cds.MS.gene05215.t1;Parent=MS.gene05215.t1 |
| Gene Sequence |
| Protein sequence |
