AlfalfaGEDB | MS.gene09987

M. sativa cultivar XinJiangDaYe / MS.gene09987

KEGG: K14003
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00400.35 PF12894.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09987.t1	XP_013469319.1	99	392	4	0	1	392	1	392	9.60E-229	802.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09987.t1	Q8GYE0	64.6	373	127	3	4	372	5	376	2.6e-142	506.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09987.t1	A0A072VNK4	99.0	392	4	0	1	392	1	392	6.9e-229	802.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene09987	0.820929	5.29E-53	-1.69E-46
MS.gene053963	MS.gene09987	0.803163	3.97E-49	-1.69E-46
MS.gene054892	MS.gene09987	0.826634	2.44E-54	-1.69E-46
MS.gene054893	MS.gene09987	0.83092	2.24E-55	-1.69E-46
MS.gene054957	MS.gene09987	0.820856	5.50E-53	-1.69E-46
MS.gene057622	MS.gene09987	0.81529	9.97E-52	-1.69E-46
MS.gene05952	MS.gene09987	0.801644	8.17E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09987.t1	MTR_1g090873	98.980	392	4	0	1	392	1	392	0.0	802
MS.gene09987.t1	MTR_1g090873	98.187	331	6	0	1	331	1	331	0.0	668
MS.gene09987.t1	MTR_4g084650	32.424	330	205	8	30	348	72	394	1.84e-51	177
MS.gene09987.t1	MTR_4g084650	33.657	309	187	8	30	327	72	373	5.27e-50	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09987.t1	AT3G52190	64.267	375	129	3	3	373	4	377	2.34e-180	507
MS.gene09987.t1	AT5G50550	32.673	303	189	9	39	335	65	358	1.79e-42	153
MS.gene09987.t1	AT5G50650	32.673	303	189	9	39	335	65	358	1.79e-42	153
MS.gene09987.t1	AT2G01470	33.673	294	181	9	41	327	76	362	3.66e-39	144

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Find 111 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACACAAATCTGTCC+GGG	0.581294	1.4:-72250209	MS.gene09987:CDS
AAAATCAACCAGCTAGACCA+AGG	0.649835	1.4:-72247488	MS.gene09987:CDS
AAACATGAAACTGTTGCCCA+AGG	0.647320	1.4:-72250487	MS.gene09987:CDS
AAATGGTTTGGTTCCATCCT+TGG	0.346387	1.4:+72249667	None:intergenic
AACTGAATGTACCTAAAGAT+TGG	0.410490	1.4:-72248171	MS.gene09987:CDS
AAGGAACTAACCCCTCTACA+GGG	0.679695	1.4:-72250468	MS.gene09987:CDS
AATCTCAACCTAGTTGTTCT+TGG	0.269966	1.4:-72252301	MS.gene09987:CDS
AATGATGCTGGATCACCTCA+GGG	0.681405	1.4:-72252361	MS.gene09987:CDS
AATGTACCTAAAGATTGGAA+AGG	0.615590	1.4:-72248166	MS.gene09987:intron
ACACAAATCTGTCCGGGATA+TGG	0.322553	1.4:-72250203	MS.gene09987:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCAACATCAATTCGGA+TGG	-	chr1.4:72251757-72251776	MS.gene09987:intron	30.0%
AACTGAATGTACCTAAAGAT+TGG	-	chr1.4:72251621-72251640	MS.gene09987:intron	30.0%
AAGACAGAAGTAAAACATAC+AGG	+	chr1.4:72249495-72249514	None:intergenic	30.0%
AATGAACACCTGAAAAATCA+TGG	-	chr1.4:72251967-72251986	MS.gene09987:intron	30.0%
AATGTACCTAAAGATTGGAA+AGG	-	chr1.4:72251626-72251645	MS.gene09987:intron	30.0%
AATTGAAGAGGAATACCAAA+GGG	+	chr1.4:72247598-72247617	None:intergenic	30.0%
AGATAACCTTTCCAATCTTT+AGG	+	chr1.4:72251635-72251654	None:intergenic	30.0%
AGGATTTATGTTCGAATTGA+CGG	+	chr1.4:72251092-72251111	None:intergenic	30.0%
ATATAGGTTCTTACAGAGAA+AGG	+	chr1.4:72250400-72250419	None:intergenic	30.0%
ATGAGTTCATGGAACAAAAT+AGG	-	chr1.4:72250314-72250333	MS.gene09987:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	72247425	72252389	72247425	ID=MS.gene09987
chr1.4	mRNA	72247425	72252389	72247425	ID=MS.gene09987.t1;Parent=MS.gene09987
chr1.4	exon	72252213	72252389	72252213	ID=MS.gene09987.t1.exon1;Parent=MS.gene09987.t1
chr1.4	CDS	72252213	72252389	72252213	ID=cds.MS.gene09987.t1;Parent=MS.gene09987.t1
chr1.4	exon	72251249	72251349	72251249	ID=MS.gene09987.t1.exon2;Parent=MS.gene09987.t1
chr1.4	CDS	72251249	72251349	72251249	ID=cds.MS.gene09987.t1;Parent=MS.gene09987.t1
chr1.4	exon	72250404	72250536	72250404	ID=MS.gene09987.t1.exon3;Parent=MS.gene09987.t1
chr1.4	CDS	72250404	72250536	72250404	ID=cds.MS.gene09987.t1;Parent=MS.gene09987.t1
chr1.4	exon	72250196	72250287	72250196	ID=MS.gene09987.t1.exon4;Parent=MS.gene09987.t1
chr1.4	CDS	72250196	72250287	72250196	ID=cds.MS.gene09987.t1;Parent=MS.gene09987.t1
chr1.4	exon	72249838	72249937	72249838	ID=MS.gene09987.t1.exon5;Parent=MS.gene09987.t1
chr1.4	CDS	72249838	72249937	72249838	ID=cds.MS.gene09987.t1;Parent=MS.gene09987.t1
chr1.4	exon	72249645	72249717	72249645	ID=MS.gene09987.t1.exon6;Parent=MS.gene09987.t1
chr1.4	CDS	72249645	72249717	72249645	ID=cds.MS.gene09987.t1;Parent=MS.gene09987.t1
chr1.4	exon	72249409	72249529	72249409	ID=MS.gene09987.t1.exon7;Parent=MS.gene09987.t1
chr1.4	CDS	72249409	72249529	72249409	ID=cds.MS.gene09987.t1;Parent=MS.gene09987.t1
chr1.4	exon	72248424	72248543	72248424	ID=MS.gene09987.t1.exon8;Parent=MS.gene09987.t1
chr1.4	CDS	72248424	72248543	72248424	ID=cds.MS.gene09987.t1;Parent=MS.gene09987.t1
chr1.4	exon	72248167	72248237	72248167	ID=MS.gene09987.t1.exon9;Parent=MS.gene09987.t1
chr1.4	CDS	72248167	72248237	72248167	ID=cds.MS.gene09987.t1;Parent=MS.gene09987.t1
chr1.4	exon	72247425	72247615	72247425	ID=MS.gene09987.t1.exon10;Parent=MS.gene09987.t1
chr1.4	CDS	72247425	72247615	72247425	ID=cds.MS.gene09987.t1;Parent=MS.gene09987.t1

Gene Sequence

>MS.gene09987

ATGGAGAATGATGCTGGATCACCTCAGGGTCCGGTTACTTGCGGGTCATGGATTCGGAGACCCGAAAATCTCAACCTAGTTGTTCTTGGAAGGTCCAAGCGTGGAAATTCTTGTCCTGCTTTGCTTCAGATTTTCTCCTTTGACCCTATAACCGTTTCTTTGTCTACTTCCCCTTTGGTATTCCTCTTCAATTCTCAAACTATATGTATATGTATGTGGGTAGAGACTGAGCTATTTGAAATATTAATCTGTTTTGTGCATACCCTTTTTATTTTAAGTTTAGAAATTGTTGTTTTTTAATGTGATTGTGTCTGTAAGTTGCAGTTGTATATAGACTATGGCCATGTTTGGATAAACAACTTAACTAAACCCTTATAGCATAAATACTTATATATAAGATATTTCTATAACAAAAGATAAAATAAAGTCTAACTGTTTTATTATAAAGTTATAAGTTGTTTTGATAAGCTATTATGAAGAGCTTATAGAGATAAGTTGTAAACAGTTTATGAACATGCCATAGGCTCTCCTAATAATCTCACAAATGCTTATGCCTGTATATAACCTATAGGCTGTATCATAAGCTATTCTGGAGAGCTTGTAGATATAAGTTGAAAACAGTTTATGAACATGTCATAAGCTCTCCTAATAATCTCACAAAAGTTTATGCATGTATTTAAGCTATAAGCTGTAAGGTATTCTGGAGAGCTTGTAGAAATAAGTTGAAAACAGTTTATGAACATTTTATAAGCTCTCCTAATAATCTCACGAATGTTTATACAAGTAGGTAACCTGAAATAAGTCGATCCAAACAGGTCCTATGTAGAGTGATGCATATGCAAAAAGATTTATTTTGTGCATTCCCTTTTGGTTTTAGCTGAGAAATTGTTTTTTCCTGAACAAGATTGTTGGTGGAAGTAGTTATTATGCAATAATTCTGCTTTTGAAGAGTGGTTTTAATCTTGAGTTTTTGGATCATGTAATTGGAAGTGTGGTTTTACTTTGATTCTCATGAGTTTTTTGTCTGACTAATCTTTCAGACCAATTTTGTGTTAGAAGCTGAGGAAGGTGATCCGGTTGCTATTGCTGTGCACCCTAGCGGTGATGATTTTATGTGCTCTTTGAGCAATGGTAGCTGCAAGTAAGCTTCTTTTCTAATAGCCATGGGATTGAAACCTTGCTCTCTTTTATGAATAATTATATCTATTGAAAACTAGTTTTGTAATTTGTTTCAATATTACATTTCTCAAAATAAAAGCTACTACTTTAAGTAACGGCAGGATAAGAAGACCAACATTTTCTGTTCCTTTAACTTTTTAAAGGACAATATAATACCGCATGCTCAGTTGTACCAAATTTTTTTGCACAGTTTTTTGTTCTTATTTCCTTGAGCTAGGAGAGTGTATGACATAATAGTTTTAGGCTCAGTTTGGTAAAACGTAGTAGATGACTGATAAGCTAGCGGATAGTGGATAAGCTAACAAATAACTAGCAAATTGAATTTGAATTGTTTGGTAAAATAAGCAGTTGAACTAACTGACCAATATAAAAATTAATTTTTAACTTTTATTTTTATTTTTATTTTTTCAAAAATGATATTGAGGGTAAAAATTAGAGAGAATATGACACGTTATAAGCTCAAACGTTACTTGACGTAGCATCTCGAAAAACACAATAAGTTTTTGAGAGAAGACCGTTACTAACAGTTCTACTTCAATCATTCGAGCTTATATGTTATAAGCTTGCGGTTTGGCATTACTGAACAGAGCCGTACTTATTTCTTAAGAGTAGCTTGCAGATATTTTGCCTCGAGTTCTATGGTTTAGATTGAAGTATTTCTTCATGTCTTGCAGATTGTTTGAGCTCTATGGTCATGAAGCAAACATGAAACTGTTGCCCAAGGAACTAACCCCTCTACAGGGTATTGGTTCCCAGACATGTATTACTTTTAGTGTTGATGGATCTAAATTTGCTGCTGGTGGGTCGGTAAGCATCACTTTAGATTCCAACAAATTGTTTTTATGCTGTGTGTGGCACTTTGATTTTTTGTCGTCTTTAGAATTGTGTCCTGTATGTTTTACTTCTGTCTTTAACACGTGTAGGATGGACACCTCAGAATTATGGAGTGGCCTAGCATGCGCATAATTTTGGATGAACCAAAAGCACACAAATCTGTCCGGGATATGGATTTTAGGTACAAAATTACTAAGCAACTCTATCTAGATCCTTCTAAAAGATGCATTCATCTAAGCATCCAGTAGAATTCTAAATTCTAATAAATACTTGATAAAATTCGCAACTAGAATTATCTTGCCGTGCCTGCAATAATTAGACTAAGGAGATAAAATGTTTTAGACAATAACAGTGTGCTTATATTATGAGCATCTTAATCCTGTGAAACCTTGATGACATTGATACTGACCGTATTGTCTTTCGTTTTGTCATACTTCAGTCTAGACTCAGAATTTCTAGCTTCAACTTCTACTGATGGTTCAGCGAGAATCTGGAAGGTTGAAGACGGTGTTCCTGTGACCACTCTGTCTCGCAACTCGGTATAGTCTTTTTTATTTAAGGACCTTTGGAAGGATCTGAAGATTTTTTTTTTTTTTTTTACAAGAATCTGTGACTTTACTCAAACCCCTTTATCCAAAATTTTCTTTTTGTCTCTTTAGGATGAAAAAATTGAATTATGTCGATTTTCCAAGGATGGAACCAAACCATTTCTATTTGGCGCCGTTCAAAAAGGTATGAGTATCTTGTTTCGAGTATATTCTATAGTATTAGTATTGTATTTGTATATCTGTCAACTTTCTTTTGATCAAGTATGACCTTAATCATTGGTACCTCTAATTTTGATTAGGGGATAAGTCTCTTACAGCGGTTTGGGATATGAGTTCATGGAACAAAATAGGGCACAAGAGGCTGCTTAGAAAGTCTGCTTCAGTAATGGCCGTTAGCCACGACGGGAAATACCTTTCTCTGTAAGAACCTATATTTACCTTGCACATATCAATTGTTTTGTTAAACATATTTAAGTCATTTGGATAGCAAGGTGGATTTTGATTGTATTGCCAAAACTGTGAAGGGTGAAGAAAACTATGTTTTTGAACTAATCATGATTAAGTCATCTAGGTCCTAGAGATTACCAAATCATTTTCTTTTGCTCAATTGCTCAGTTCTTTATCTTTTCTTGAACACTTATTATTCTACCTTATGATGCTCATTTCTAATTTATGTCTTATACAATCAAACTGAAACTTTTAGAATTCCTTTCCTTACAATTATAGTTTTGGAATTGTTTATAAGGATGAGTTTTTTAAAAAATGCAATGTATTTTATGTGAGTTTTTTAAAAAGGTCTTTTCGAGAAAGTTATAGCTATTTTAGGTTTTCATGAAATATTTGAGAAGGGCTTTTTTGAAATTCTATGCTGTTTTGTCCCATGCCATGTTTGTCATATCTCAGAACTAAGGCTTCTCTTTTGGGCTGTTCAATTTGATATGGATTTGAACAAATACTTTTGGAAATTAAGTTTACAATAATAAGACTTAAATCAAGAGCATTTTTTCTGCTTAAAATATCATATTTAATTTAATGGGTGAAAAACACTTGAGTTGATTGCAGACAAACTAACTTGTTATAAAAAAGTTTGTTTTTAAAATTTGCCGTCAATTCGAACATAAATCCTTTCAGAATCGTTATAGTCAACATAGTTTTGTAAATATTAGTGGAGTCTACCGTGCATCACAGATAAAATTAGTCCAATTATTTTAAAAGGTAAACTTGTGTGATATGATGAGCACCTTGCTTGTATAATCTTGAGCTCATCAGATCTCTGTAATTTTAGGGCAAGTAAAGATGGAGACATATGTGTAGTTGAAGTAAAAAAGATGCAGATACACCATTATAGCAAGAGACTACACCTCGGTACAACTATCGCAACATTGGATTTCTGTCCTAGTGAAAGGTAAATATCCACACTGGTACCTTTTTGATTAATATCAATCATTCATGAACACACTTTTGGGGTTAAGCTATTTGTTTCAATGTAAAAGTTTAAAAAATGCAGTGGCCTAAAATTTCAATCTATTGGCCTAATAAACCAGTTCTCTTAGTCTTGGCTATTCACCTGAGCTTTTATTATTTTATGCAGGGTTGTACTTACAACCTCAGTAGAATGGGGAGCATTGGTCACTAAACTGAATGTACCTAAAGATTGGAAAGGTTATCTCTCTTCCATATGCTCGCACACATCCATAAAACACATTCACAATCGTCCTTTCTGAGACCATAGAATATAACAGAAATAATACTTTGACTAAAAATTTTAACAAAAATCAACATCAATTCGGATGGATGGTTAATGTCGTTCAAATATGTGGTTAATTACGCTCAGTGAATGGTTAATGAATATGACATGGTGTTGCAACTTATTAACTGTCCATTGAACGTGATTAGGCACGATTTTGAACATCATTGACCGTCATCTCCACGTGATAAAATAAACATGATATCCATTGACCACAATTTGTGTTTAAAATTAAATGAACACCTGAAAAATCATGGTGTGGTTAATTACATTTAGCGGATGATTAATGATTGGTGGCACCTTGTTATATTCATTAACCATCCATGAAACGTAACTAACCACATTTAAATTGCACCAACCATCCATATTGTTTTCGAAATTTGTTGTCAAATTTGCGTGTTAAAATAGCACAGCTCAGAATATAATGTTCATTGAATTTGACATTTTATGTTTGTGAAACTTGCAGAGTGGCAGATATACTTGGTGCTTTTAGGGCTATTTTTAGTGTCGGCAGTTGCATTTTACATATTCTTCGAGAACTCTGATTCGTTCTGGGGATTTCCAATGGGAAAAAATCAACCAGCTAGACCAAGGTTTAAACCAATGATGAGAGACCCTCAATCATTTGATGATCAATGGGGACCAGTAGATATGTGA

Protein sequence

>MS.gene09987.t1

MENDAGSPQGPVTCGSWIRRPENLNLVVLGRSKRGNSCPALLQIFSFDPITVSLSTSPLTNFVLEAEEGDPVAIAVHPSGDDFMCSLSNGSCKLFELYGHEANMKLLPKELTPLQGIGSQTCITFSVDGSKFAAGGSDGHLRIMEWPSMRIILDEPKAHKSVRDMDFSLDSEFLASTSTDGSARIWKVEDGVPVTTLSRNSDEKIELCRFSKDGTKPFLFGAVQKGDKSLTAVWDMSSWNKIGHKRLLRKSASVMAVSHDGKYLSLASKDGDICVVEVKKMQIHHYSKRLHLGTTIATLDFCPSERVVLTTSVEWGALVTKLNVPKDWKEWQIYLVLLGLFLVSAVAFYIFFENSDSFWGFPMGKNQPARPRFKPMMRDPQSFDDQWGPVDM