Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20174.t1 | XP_003630623.2 | 96.2 | 771 | 26 | 1 | 3 | 770 | 1 | 771 | 0.00E+00 | 1572.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20174.t1 | O04196 | 78.9 | 711 | 148 | 1 | 62 | 770 | 56 | 766 | 0.0e+00 | 1236.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20174.t1 | G7LIX1 | 96.2 | 771 | 26 | 1 | 3 | 770 | 1 | 771 | 0.0e+00 | 1572.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051360 | MS.gene20174 | 0.841822 | 3.76E-58 | -1.69E-46 |
| MS.gene05492 | MS.gene20174 | 0.86693 | 1.99E-65 | -1.69E-46 |
| MS.gene060837 | MS.gene20174 | 0.815007 | 1.15E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20174 | MS.gene38584 | PPI |
| MS.gene20174 | MS.gene013128 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20174.t1 | MTR_8g101490 | 96.239 | 771 | 26 | 1 | 3 | 770 | 1 | 771 | 0.0 | 1557 |
| MS.gene20174.t1 | MTR_8g101490 | 96.215 | 634 | 21 | 1 | 3 | 633 | 1 | 634 | 0.0 | 1277 |
| MS.gene20174.t1 | MTR_3g099500 | 45.698 | 709 | 341 | 15 | 57 | 752 | 81 | 758 | 0.0 | 600 |
| MS.gene20174.t1 | MTR_3g099500 | 44.628 | 726 | 341 | 16 | 57 | 752 | 81 | 775 | 0.0 | 590 |
| MS.gene20174.t1 | MTR_7g094560 | 33.046 | 696 | 367 | 24 | 75 | 747 | 202 | 821 | 3.16e-96 | 320 |
| MS.gene20174.t1 | MTR_1g090693 | 26.871 | 294 | 153 | 11 | 171 | 423 | 281 | 553 | 4.52e-16 | 83.2 |
| MS.gene20174.t1 | MTR_7g104080 | 26.840 | 231 | 131 | 10 | 195 | 419 | 306 | 504 | 2.28e-11 | 67.8 |
| MS.gene20174.t1 | MTR_7g104080 | 26.840 | 231 | 131 | 10 | 195 | 419 | 303 | 501 | 3.23e-11 | 67.4 |
| MS.gene20174.t1 | MTR_7g104080 | 26.840 | 231 | 131 | 10 | 195 | 419 | 306 | 504 | 3.59e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20174.t1 | AT2G39930 | 77.686 | 726 | 159 | 2 | 48 | 770 | 41 | 766 | 0.0 | 1218 |
| MS.gene20174.t1 | AT2G39930 | 79.092 | 617 | 126 | 2 | 48 | 661 | 41 | 657 | 0.0 | 1053 |
| MS.gene20174.t1 | AT2G39930 | 78.114 | 562 | 120 | 2 | 48 | 606 | 41 | 602 | 0.0 | 944 |
| MS.gene20174.t1 | AT4G09020 | 45.924 | 736 | 349 | 17 | 34 | 752 | 43 | 746 | 0.0 | 610 |
| MS.gene20174.t1 | AT1G03310 | 31.178 | 696 | 372 | 21 | 74 | 742 | 228 | 843 | 7.97e-95 | 316 |
| MS.gene20174.t1 | AT1G03310 | 31.178 | 696 | 372 | 21 | 74 | 742 | 228 | 843 | 7.97e-95 | 316 |
| MS.gene20174.t1 | AT5G04360 | 23.138 | 631 | 365 | 24 | 77 | 635 | 204 | 786 | 2.11e-16 | 84.3 |
| MS.gene20174.t1 | AT5G04360 | 23.138 | 631 | 365 | 24 | 77 | 635 | 204 | 786 | 2.11e-16 | 84.3 |
| MS.gene20174.t1 | AT5G03650 | 30.603 | 232 | 121 | 11 | 195 | 419 | 258 | 456 | 9.57e-14 | 75.9 |
| MS.gene20174.t1 | AT2G36390 | 26.407 | 231 | 132 | 10 | 195 | 419 | 293 | 491 | 2.45e-11 | 68.2 |
Find 208 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCCCTCACTGGGGTATT+TGG | 0.181610 | 4.4:+4019190 | MS.gene20174:CDS |
| CTACAGTTACAATGCTATTC+AGG | 0.204436 | 4.4:+4015119 | MS.gene20174:CDS |
| ATCAATGGCGGACTGCTTAA+AGG | 0.214386 | 4.4:-4018048 | None:intergenic |
| TGGAACGGAGTTAATGTATT+TGG | 0.258630 | 4.4:+4017988 | MS.gene20174:CDS |
| AACTCCTCTAAAAGAAATAA+TGG | 0.265535 | 4.4:-4015965 | None:intergenic |
| GTTATAAGCAGAGGAGAGTT+TGG | 0.280859 | 4.4:+4014023 | MS.gene20174:CDS |
| CTTCTTTGACCTTGAATTTG+AGG | 0.284584 | 4.4:-4013278 | None:intergenic |
| CTCTATGCTTATAAATTTGA+TGG | 0.295492 | 4.4:+4013688 | MS.gene20174:CDS |
| GGGGAATTCTACAACTATTC+AGG | 0.301916 | 4.4:+4017052 | MS.gene20174:CDS |
| GGAGAAGCTTGATCACTTAA+AGG | 0.306680 | 4.4:+4014347 | MS.gene20174:CDS |
| CTGTATTGCAATATCTCTTC+CGG | 0.308252 | 4.4:-4023647 | None:intergenic |
| GGGAGTTCCGATGATATATA+TGG | 0.316369 | 4.4:+4022087 | MS.gene20174:intron |
| TGGGAGTCCTAATTTGTATC+AGG | 0.317614 | 4.4:+4020229 | MS.gene20174:CDS |
| ATCATTGTTGTCTTCTCCAT+TGG | 0.320037 | 4.4:-4020625 | None:intergenic |
| GTCAGCAAGTCACCTTCTAT+TGG | 0.323135 | 4.4:-4018015 | None:intergenic |
| AGGTACCATACCAGCCATTT+GGG | 0.325178 | 4.4:-4014075 | None:intergenic |
| ATATATATGGGAGATGAATA+TGG | 0.330449 | 4.4:+4022100 | MS.gene20174:CDS |
| AGATAAACCTGATACAAATT+AGG | 0.337665 | 4.4:-4020236 | None:intergenic |
| ATCATATGGTGCTTTCTTGC+TGG | 0.344939 | 4.4:-4023605 | None:intergenic |
| TCTGTTGTGAATCTCGAAAT+TGG | 0.346786 | 4.4:-4013239 | None:intergenic |
| GTTTGGCATGTGTTTCTAAA+AGG | 0.352602 | 4.4:+4013649 | MS.gene20174:CDS |
| AAGGGTACAGATGGCTTTGC+TGG | 0.353599 | 4.4:+4020185 | MS.gene20174:CDS |
| TCAGACCAGTCTGGTGTTAC+AGG | 0.355192 | 4.4:-4022472 | None:intergenic |
| TAGCGTCCCGAGTCACGTTA+TGG | 0.358096 | 4.4:+4023913 | MS.gene20174:intron |
| TTATAAGCAGAGGAGAGTTT+GGG | 0.364589 | 4.4:+4014024 | MS.gene20174:CDS |
| AATTTATAGTGGACTGCTTA+AGG | 0.368791 | 4.4:+4017116 | MS.gene20174:CDS |
| TCTCTCGTGCAACAGATATT+GGG | 0.369152 | 4.4:+4017807 | MS.gene20174:intron |
| TGGCTTCACTCTAGCTGATT+TGG | 0.373124 | 4.4:+4020575 | MS.gene20174:CDS |
| CATCTGTACCCTTGATAAAC+TGG | 0.375594 | 4.4:-4020175 | None:intergenic |
| AGTCTGGTGTTACAGGAAAA+TGG | 0.377654 | 4.4:-4022465 | None:intergenic |
| AAGTTGGCACTTTCCCTCAC+TGG | 0.385401 | 4.4:+4019181 | MS.gene20174:CDS |
| AAGGTACCATACCAGCCATT+TGG | 0.387541 | 4.4:-4014076 | None:intergenic |
| TTATTTCCGATGGGACAAAA+AGG | 0.389436 | 4.4:+4022258 | MS.gene20174:CDS |
| GAAGGTGACTTGCTGACAAT+TGG | 0.397727 | 4.4:+4018021 | MS.gene20174:CDS |
| TCATTGTTGTCTTCTCCATT+GGG | 0.398138 | 4.4:-4020624 | None:intergenic |
| GATCCATTGGTGAATAAAAC+AGG | 0.399169 | 4.4:+4013622 | MS.gene20174:CDS |
| TGACCTTGAATTTGAGGAAA+TGG | 0.399301 | 4.4:-4013272 | None:intergenic |
| ACTATAAATTTCCTTACAAC+GGG | 0.399791 | 4.4:-4017103 | None:intergenic |
| TCAATGGCGGACTGCTTAAA+GGG | 0.403047 | 4.4:-4018047 | None:intergenic |
| TAATTTCTTTCTTTCTCTCA+TGG | 0.403152 | 4.4:+4021406 | MS.gene20174:CDS |
| TTTCTCACACCTGATCTTCC+CGG | 0.403432 | 4.4:+4023628 | MS.gene20174:CDS |
| TTATTCATCTTGCAGGAACT+TGG | 0.405480 | 4.4:+4015045 | MS.gene20174:intron |
| ATTGCAACCATCCCGTTGTA+AGG | 0.408121 | 4.4:+4017092 | MS.gene20174:CDS |
| TGCAATGTGTTTAGTTTGAC+TGG | 0.408898 | 4.4:+4014202 | MS.gene20174:intron |
| TCTTTCTCTCATGGTTTCCC+AGG | 0.430118 | 4.4:+4021415 | MS.gene20174:CDS |
| CGGATGTCGGGAAGTCATCT+AGG | 0.434667 | 4.4:-4022423 | None:intergenic |
| ACTCCTCTAAAAGAAATAAT+GGG | 0.435507 | 4.4:-4015964 | None:intergenic |
| CAGAGCGTCCTGGATACATA+TGG | 0.435923 | 4.4:+4023566 | MS.gene20174:CDS |
| AGCCTTTGGAAACTTGCAAT+TGG | 0.436280 | 4.4:-4013369 | None:intergenic |
| GTATTTGGTGCTCCAATAGA+AGG | 0.437044 | 4.4:+4018003 | MS.gene20174:CDS |
| TCACCATTTCCTCAAATTCA+AGG | 0.439664 | 4.4:+4013269 | MS.gene20174:CDS |
| ATAGCTGAAGCCTGGGATGC+TGG | 0.441423 | 4.4:+4019147 | MS.gene20174:CDS |
| TGTATTGCAATATCTCTTCC+GGG | 0.441702 | 4.4:-4023646 | None:intergenic |
| AGAAGAAAACCTTCGCCGTT+GGG | 0.443010 | 4.4:+4013296 | MS.gene20174:CDS |
| CGTTGTAAGGAAATTTATAG+TGG | 0.443119 | 4.4:+4017105 | MS.gene20174:CDS |
| TAGGACCTGATGGTAATTGC+TGG | 0.443531 | 4.4:+4014051 | MS.gene20174:CDS |
| ACTGAAGCCTCTCGGATGTC+GGG | 0.446917 | 4.4:-4022435 | None:intergenic |
| GGCACACAGGCGAGGAATAG+AGG | 0.448960 | 4.4:+4015795 | MS.gene20174:CDS |
| CTATTATGACCAGGAGTAGC+AGG | 0.449828 | 4.4:+4017872 | MS.gene20174:CDS |
| TATAGCTTATAGCTGAAGCC+TGG | 0.452561 | 4.4:+4019139 | MS.gene20174:intron |
| GAGAAAATCACAATAGTAGC+TGG | 0.454266 | 4.4:+4020649 | MS.gene20174:CDS |
| CCCTCACTGGGGTATTTGGT+CGG | 0.455085 | 4.4:+4019194 | MS.gene20174:CDS |
| AGTGTTGTAGAGTGAGAAAG+AGG | 0.455306 | 4.4:-4013196 | None:intergenic |
| TGCAGCTTAATTATTTCCGA+TGG | 0.457344 | 4.4:+4022248 | MS.gene20174:intron |
| GAGTGAATTGAGTGAGTAAA+TGG | 0.458844 | 4.4:-4013440 | None:intergenic |
| GCCTTTGAAATATCCACAAA+AGG | 0.460159 | 4.4:+4014236 | MS.gene20174:CDS |
| ATATCTCTTCCGGGAAGATC+AGG | 0.461427 | 4.4:-4023637 | None:intergenic |
| GTATTTGGTCGGAATGGAAT+GGG | 0.462316 | 4.4:+4019205 | MS.gene20174:CDS |
| CATTGGTGAAAAGTAATTGA+TGG | 0.464554 | 4.4:-4015698 | None:intergenic |
| GTAGGGTGAAGGGTAGCCTT+TGG | 0.465735 | 4.4:-4013383 | None:intergenic |
| GAGTTCCCTGGTACATATCT+TGG | 0.467142 | 4.4:+4014318 | MS.gene20174:CDS |
| TGAATAAAACAGGATGTGTT+TGG | 0.471312 | 4.4:+4013632 | MS.gene20174:CDS |
| GCTGATGAGTATCTTATCAT+TGG | 0.475818 | 4.4:-4015715 | None:intergenic |
| ATTACTGGAGCAGGTTATCA+TGG | 0.476022 | 4.4:+4015900 | MS.gene20174:intron |
| ACCTTCACTCCACGAAGTAT+TGG | 0.476206 | 4.4:-4018090 | None:intergenic |
| GTACAGGCCTCCAGCATCCC+AGG | 0.477191 | 4.4:-4019157 | None:intergenic |
| CACTGTACGCCAGTTTATCA+AGG | 0.477869 | 4.4:+4020166 | MS.gene20174:CDS |
| GTACATTACTCTTGATCCAT+TGG | 0.478751 | 4.4:+4013609 | MS.gene20174:CDS |
| TGGTAATTGCTGGCCCCAAA+TGG | 0.480850 | 4.4:+4014061 | MS.gene20174:CDS |
| AGAGGAGAGTTTGGGGAAGT+AGG | 0.483861 | 4.4:+4014032 | MS.gene20174:CDS |
| TCGAGTAAGGCCGAGTTCCC+TGG | 0.484416 | 4.4:+4014306 | MS.gene20174:CDS |
| TTCTACAACTATTCAGGATG+TGG | 0.486104 | 4.4:+4017058 | MS.gene20174:CDS |
| AGTTGGCACTTTCCCTCACT+GGG | 0.493678 | 4.4:+4019182 | MS.gene20174:CDS |
| CACTGAAGCCTCTCGGATGT+CGG | 0.494549 | 4.4:-4022436 | None:intergenic |
| AGTACCTCCTCATGATCAAA+AGG | 0.494764 | 4.4:-4014095 | None:intergenic |
| CATATGTATCCAGGACGCTC+TGG | 0.496645 | 4.4:-4023565 | None:intergenic |
| GGTATTTGGTCGGAATGGAA+TGG | 0.501264 | 4.4:+4019204 | MS.gene20174:CDS |
| ATTACCTTGCCAGAGCGTCC+TGG | 0.503886 | 4.4:+4023556 | MS.gene20174:CDS |
| TCATTTCATTAATCCCATCA+TGG | 0.505131 | 4.4:-4015756 | None:intergenic |
| TACAAAGCATGAGTCGAGTA+AGG | 0.506814 | 4.4:+4014293 | MS.gene20174:CDS |
| GCATTTGCTGAATGTATTTG+TGG | 0.508395 | 4.4:+4020209 | MS.gene20174:CDS |
| TACAGTTACAATGCTATTCA+GGG | 0.511531 | 4.4:+4015120 | MS.gene20174:CDS |
| TACAAAACTGTGGCCATGAT+GGG | 0.511714 | 4.4:+4015743 | MS.gene20174:CDS |
| GATGAATATGGACATACAAA+AGG | 0.512112 | 4.4:+4022112 | MS.gene20174:CDS |
| GGAAAGTGCCAACTTGGTAC+AGG | 0.512943 | 4.4:-4019173 | None:intergenic |
| ACTGGCGGAACTTGGTCAAA+AGG | 0.516343 | 4.4:-4022315 | None:intergenic |
| GGAGTTCCGATGATATATAT+GGG | 0.517870 | 4.4:+4022088 | MS.gene20174:CDS |
| TGGGGCCAGCAATTACCATC+AGG | 0.521370 | 4.4:-4014056 | None:intergenic |
| TGCAGGGAATGTGAGTCGCT+TGG | 0.523500 | 4.4:+4022400 | MS.gene20174:intron |
| AGTGAGGGAAAGTGCCAACT+TGG | 0.524104 | 4.4:-4019179 | None:intergenic |
| CGGCTAGATTCAGACCAGTC+TGG | 0.526153 | 4.4:-4022481 | None:intergenic |
| ATCTTGCTTCTATTATGACC+AGG | 0.526714 | 4.4:+4017863 | MS.gene20174:CDS |
| CTGGCCCCAAATGGCTGGTA+TGG | 0.529820 | 4.4:+4014070 | MS.gene20174:CDS |
| CACTATAAATTTCCTTACAA+CGG | 0.530840 | 4.4:-4017104 | None:intergenic |
| AACCTTGTATGTGCTCATGA+TGG | 0.532079 | 4.4:+4020555 | MS.gene20174:CDS |
| AAGTGCTTACTGGCGGAACT+TGG | 0.533271 | 4.4:-4022323 | None:intergenic |
| GTGCCTCAGTAAAGAAATTG+AGG | 0.534102 | 4.4:+4021369 | MS.gene20174:CDS |
| TTCTTGAGGAGTGGCACCGT+AGG | 0.535813 | 4.4:-4013401 | None:intergenic |
| AAGAAGAAAACCTTCGCCGT+TGG | 0.535917 | 4.4:+4013295 | MS.gene20174:CDS |
| ATGATAAGATACTCATCAGC+TGG | 0.536295 | 4.4:+4015718 | MS.gene20174:CDS |
| AGTATATAACCTGCTACTCC+TGG | 0.536428 | 4.4:-4017881 | None:intergenic |
| ACTCAGATGGACTCGGTGAA+GGG | 0.540328 | 4.4:+4023490 | MS.gene20174:intron |
| AGAGGTTCCCATATGTATCC+AGG | 0.540662 | 4.4:-4023574 | None:intergenic |
| TCAGGTGTGAGAAAATCATA+TGG | 0.541452 | 4.4:-4023619 | None:intergenic |
| CATTTGCTGAATGTATTTGT+GGG | 0.541483 | 4.4:+4020210 | MS.gene20174:CDS |
| CACAATAGTAGCTGGAACTG+TGG | 0.542471 | 4.4:+4020657 | MS.gene20174:CDS |
| AACTCAGATGGACTCGGTGA+AGG | 0.542854 | 4.4:+4023489 | MS.gene20174:intron |
| TTACTGATCATATCAATCAA+TGG | 0.544584 | 4.4:-4018063 | None:intergenic |
| GTGCCACTCCTCAAGAAGAC+GGG | 0.548138 | 4.4:+4013407 | MS.gene20174:CDS |
| CAGTTTATCAAGGGTACAGA+TGG | 0.549849 | 4.4:+4020176 | MS.gene20174:CDS |
| AATTGCTGGCCCCAAATGGC+TGG | 0.551029 | 4.4:+4014065 | MS.gene20174:CDS |
| GCCATGCCACTGAAGCCTCT+CGG | 0.551964 | 4.4:-4022443 | None:intergenic |
| AATGGAGAAGACAACAATGA+TGG | 0.552146 | 4.4:+4020627 | MS.gene20174:CDS |
| TCCGAGAGGCTTCAGTGGCA+TGG | 0.554648 | 4.4:+4022442 | MS.gene20174:CDS |
| ATGTCATGAGTTCAATGAGC+TGG | 0.556145 | 4.4:+4015092 | MS.gene20174:CDS |
| TAAATTTCCTTACAACGGGA+TGG | 0.557866 | 4.4:-4017099 | None:intergenic |
| GCTTTGATCAACAATGGCAA+TGG | 0.558374 | 4.4:+4013150 | None:intergenic |
| GGAGTGGCACCGTAGGGTGA+AGG | 0.558934 | 4.4:-4013394 | None:intergenic |
| ACTGGGGTATTTGGTCGGAA+TGG | 0.560039 | 4.4:+4019199 | MS.gene20174:CDS |
| TCCAATACTTCGTGGAGTGA+AGG | 0.560057 | 4.4:+4018089 | MS.gene20174:CDS |
| GCAGCTTAATTATTTCCGAT+GGG | 0.560112 | 4.4:+4022249 | MS.gene20174:intron |
| CGCCAATTGCAAGTTTCCAA+AGG | 0.561119 | 4.4:+4013367 | MS.gene20174:CDS |
| GAAAGAGGAGAGAGAATGTG+AGG | 0.563347 | 4.4:-4013181 | None:intergenic |
| TGGTACATATCTTGGTGTAG+TGG | 0.564531 | 4.4:+4014326 | MS.gene20174:CDS |
| ACAAGGTTAATACTATTCCA+TGG | 0.565220 | 4.4:-4020540 | None:intergenic |
| TTCTTGCTGGTGTCTACGAG+AGG | 0.566153 | 4.4:-4023592 | None:intergenic |
| ATAGCTTATAGCTGAAGCCT+GGG | 0.567230 | 4.4:+4019140 | MS.gene20174:intron |
| TTTCCTCAATTTCTTTACTG+AGG | 0.567283 | 4.4:-4021372 | None:intergenic |
| AAGATATGTACCAGGGAACT+CGG | 0.568249 | 4.4:-4014316 | None:intergenic |
| AGTAATGATCCAATACTTCG+TGG | 0.568695 | 4.4:+4018081 | MS.gene20174:CDS |
| GACACGATTCCCAACGGCGA+AGG | 0.568849 | 4.4:-4013305 | None:intergenic |
| TGAATTTGAGGAAATGGTGA+TGG | 0.569036 | 4.4:-4013266 | None:intergenic |
| TATATGAAATGCATGTGAGA+GGG | 0.570887 | 4.4:+4014268 | MS.gene20174:CDS |
| CCAGGGTAAAAGCCACAAAA+CGG | 0.572393 | 4.4:-4022501 | None:intergenic |
| AAATTGACCCCGTCTTCTTG+AGG | 0.573022 | 4.4:-4013415 | None:intergenic |
| GTATTACATGTTAGCACCCA+AGG | 0.574927 | 4.4:+4015999 | MS.gene20174:CDS |
| AAAGGCTACCCTTCACCCTA+CGG | 0.576668 | 4.4:+4013385 | MS.gene20174:CDS |
| AAAATAAACTCAGATGGACT+CGG | 0.579909 | 4.4:+4023483 | MS.gene20174:intron |
| TATAAGCAGAGGAGAGTTTG+GGG | 0.580184 | 4.4:+4014025 | MS.gene20174:CDS |
| AGCCATCATGAGCACATACA+AGG | 0.581009 | 4.4:-4020557 | None:intergenic |
| GCTTCTTCCATAACGTGACT+CGG | 0.582094 | 4.4:-4023920 | None:intergenic |
| TTTGTTACCAGTCTCTGGAA+CGG | 0.582944 | 4.4:+4017973 | MS.gene20174:intron |
| AGAGCGTCCTGGATACATAT+GGG | 0.583885 | 4.4:+4023567 | MS.gene20174:CDS |
| GATTAGGCAGTTATAAGCAG+AGG | 0.584382 | 4.4:+4014014 | MS.gene20174:intron |
| GCCTGTGTGCCTCTTTGATG+AGG | 0.584935 | 4.4:-4015783 | None:intergenic |
| TCTTGAGGAGTGGCACCGTA+GGG | 0.585196 | 4.4:-4013400 | None:intergenic |
| TCATAGTAGTGACCGTGTTG+AGG | 0.585274 | 4.4:-4013721 | None:intergenic |
| TCATCTCCCATATATATCAT+CGG | 0.586946 | 4.4:-4022094 | None:intergenic |
| CACGTAATTATCATGACAGT+AGG | 0.588746 | 4.4:-4022149 | None:intergenic |
| GAGTGGCACCGTAGGGTGAA+GGG | 0.589871 | 4.4:-4013393 | None:intergenic |
| CGACATCCGAGAGGCTTCAG+TGG | 0.590601 | 4.4:+4022437 | MS.gene20174:CDS |
| TTTGGGGAAGTAGGACCTGA+TGG | 0.592579 | 4.4:+4014041 | MS.gene20174:CDS |
| ATACAAAACTGTGGCCATGA+TGG | 0.598588 | 4.4:+4015742 | MS.gene20174:CDS |
| GTAACAGAAATGCACGTGGA+TGG | 0.600720 | 4.4:+4017829 | MS.gene20174:CDS |
| TTCGCCGTTGGGAATCGTGT+CGG | 0.601538 | 4.4:+4013307 | MS.gene20174:CDS |
| TACAGCTGAAGGGAATGAGA+AGG | 0.602790 | 4.4:+4015939 | MS.gene20174:CDS |
| TCTGGCAAGGTAATAGTGAA+AGG | 0.602980 | 4.4:-4023547 | None:intergenic |
| GCTGGAGGCCTGTACCAAGT+TGG | 0.603543 | 4.4:+4019165 | MS.gene20174:CDS |
| ATTTGAGGAAATGGTGATGG+AGG | 0.605171 | 4.4:-4013263 | None:intergenic |
| TCCTCATCAAAGAGGCACAC+AGG | 0.607009 | 4.4:+4015782 | MS.gene20174:CDS |
| AACAAGCATAACTTGCCCAA+TGG | 0.607580 | 4.4:+4020609 | MS.gene20174:CDS |
| TTATTTGCAGAATAAAGTGA+CGG | 0.609693 | 4.4:+4013585 | MS.gene20174:intron |
| TCTACAACTATTCAGGATGT+GGG | 0.610031 | 4.4:+4017059 | MS.gene20174:CDS |
| CTTCTTCCATAACGTGACTC+GGG | 0.610752 | 4.4:-4023919 | None:intergenic |
| GTATCCAGGACGCTCTGGCA+AGG | 0.614100 | 4.4:-4023560 | None:intergenic |
| ATCAAAGAGGCACACAGGCG+AGG | 0.614929 | 4.4:+4015787 | MS.gene20174:CDS |
| ATATATGAAATGCATGTGAG+AGG | 0.617561 | 4.4:+4014267 | MS.gene20174:CDS |
| GAATATGGACATACAAAAGG+AGG | 0.618039 | 4.4:+4022115 | MS.gene20174:CDS |
| GACCCCGTCTTCTTGAGGAG+TGG | 0.621998 | 4.4:-4013410 | None:intergenic |
| GGTGCCACTCCTCAAGAAGA+CGG | 0.623962 | 4.4:+4013406 | MS.gene20174:CDS |
| AATGAAGCTCCTCATCAAAG+AGG | 0.627064 | 4.4:+4015774 | MS.gene20174:CDS |
| ACTACACCAAGATATGTACC+AGG | 0.628536 | 4.4:-4014324 | None:intergenic |
| AGCTCATTGAACTCATGACA+TGG | 0.632491 | 4.4:-4015090 | None:intergenic |
| ACAGCTGAAGGGAATGAGAA+GGG | 0.635794 | 4.4:+4015940 | MS.gene20174:CDS |
| TGTGTTTAGTTTGACTGGGA+AGG | 0.637186 | 4.4:+4014207 | MS.gene20174:intron |
| ACAGTTACAATGCTATTCAG+GGG | 0.651047 | 4.4:+4015121 | MS.gene20174:CDS |
| CAATGGCGGACTGCTTAAAG+GGG | 0.654129 | 4.4:-4018046 | None:intergenic |
| GCAATGTGTTTAGTTTGACT+GGG | 0.655343 | 4.4:+4014203 | MS.gene20174:intron |
| CCGACCAAATACCCCAGTGA+GGG | 0.656679 | 4.4:-4019194 | None:intergenic |
| GGCGGAACTTGGTCAAAAGG+CGG | 0.659867 | 4.4:-4022312 | None:intergenic |
| TTGGTCGGAATGGAATGGGA+AGG | 0.660527 | 4.4:+4019209 | MS.gene20174:CDS |
| GCTGAAGCCTGGGATGCTGG+AGG | 0.661627 | 4.4:+4019150 | MS.gene20174:CDS |
| GGTACCATACCAGCCATTTG+GGG | 0.663979 | 4.4:-4014074 | None:intergenic |
| ACTGTACGCCAGTTTATCAA+GGG | 0.666967 | 4.4:+4020167 | MS.gene20174:CDS |
| AACACCGACACGATTCCCAA+CGG | 0.668297 | 4.4:-4013311 | None:intergenic |
| CGTTAAAATGAAGTTAACAG+TGG | 0.679263 | 4.4:-4023945 | None:intergenic |
| TAGTAGCTGGAACTGTGGAG+AGG | 0.681130 | 4.4:+4020662 | MS.gene20174:CDS |
| CAGTTACAATGCTATTCAGG+GGG | 0.682543 | 4.4:+4015122 | MS.gene20174:CDS |
| TGCCACTCCTCAAGAAGACG+GGG | 0.682576 | 4.4:+4013408 | MS.gene20174:CDS |
| TACAGGGAGGAAGAAAACCA+TGG | 0.702341 | 4.4:+4020523 | MS.gene20174:intron |
| CTGATCATATCAATCAATGG+CGG | 0.707861 | 4.4:-4018060 | None:intergenic |
| GTTGGCACTTTCCCTCACTG+GGG | 0.708819 | 4.4:+4019183 | MS.gene20174:CDS |
| TCAGCTGGCATACAAAACTG+TGG | 0.712260 | 4.4:+4015733 | MS.gene20174:CDS |
| AAATCTGAAGAAGTCTGACG+AGG | 0.720742 | 4.4:-4022287 | None:intergenic |
| TCCGACCAAATACCCCAGTG+AGG | 0.722871 | 4.4:-4019195 | None:intergenic |
| ATGACTTCCCGACATCCGAG+AGG | 0.723647 | 4.4:+4022428 | MS.gene20174:CDS |
| CTACACCAAGATATGTACCA+GGG | 0.737340 | 4.4:-4014323 | None:intergenic |
| TTGGGTAACAGAAATGCACG+TGG | 0.738443 | 4.4:+4017825 | MS.gene20174:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 4013163 | 4023985 | 4013163 | ID=MS.gene20174 |
| chr4.4 | mRNA | 4013163 | 4023985 | 4013163 | ID=MS.gene20174.t1;Parent=MS.gene20174 |
| chr4.4 | exon | 4013163 | 4013504 | 4013163 | ID=MS.gene20174.t1.exon1;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4013163 | 4013504 | 4013163 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4013595 | 4013777 | 4013595 | ID=MS.gene20174.t1.exon2;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4013595 | 4013777 | 4013595 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4014020 | 4014112 | 4014020 | ID=MS.gene20174.t1.exon3;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4014020 | 4014112 | 4014020 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4014216 | 4014368 | 4014216 | ID=MS.gene20174.t1.exon4;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4014216 | 4014368 | 4014216 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4015060 | 4015151 | 4015060 | ID=MS.gene20174.t1.exon5;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4015060 | 4015151 | 4015060 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4015675 | 4015816 | 4015675 | ID=MS.gene20174.t1.exon6;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4015675 | 4015816 | 4015675 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4015913 | 4016020 | 4015913 | ID=MS.gene20174.t1.exon7;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4015913 | 4016020 | 4015913 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4017052 | 4017137 | 4017052 | ID=MS.gene20174.t1.exon8;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4017052 | 4017137 | 4017052 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4017822 | 4017893 | 4017822 | ID=MS.gene20174.t1.exon9;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4017822 | 4017893 | 4017822 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4017984 | 4018110 | 4017984 | ID=MS.gene20174.t1.exon10;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4017984 | 4018110 | 4017984 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4019144 | 4019230 | 4019144 | ID=MS.gene20174.t1.exon11;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4019144 | 4019230 | 4019144 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4020158 | 4020250 | 4020158 | ID=MS.gene20174.t1.exon12;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4020158 | 4020250 | 4020158 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4020528 | 4020683 | 4020528 | ID=MS.gene20174.t1.exon13;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4020528 | 4020683 | 4020528 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4021353 | 4021436 | 4021353 | ID=MS.gene20174.t1.exon14;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4021353 | 4021436 | 4021353 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4022088 | 4022168 | 4022088 | ID=MS.gene20174.t1.exon15;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4022088 | 4022168 | 4022088 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4022253 | 4022335 | 4022253 | ID=MS.gene20174.t1.exon16;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4022253 | 4022335 | 4022253 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4022405 | 4022522 | 4022405 | ID=MS.gene20174.t1.exon17;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4022405 | 4022522 | 4022405 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4023496 | 4023698 | 4023496 | ID=MS.gene20174.t1.exon18;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4023496 | 4023698 | 4023496 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| chr4.4 | exon | 4023916 | 4023985 | 4023916 | ID=MS.gene20174.t1.exon19;Parent=MS.gene20174.t1 |
| chr4.4 | CDS | 4023916 | 4023985 | 4023916 | ID=cds.MS.gene20174.t1;Parent=MS.gene20174.t1 |
| Gene Sequence |
| Protein sequence |
