Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20372.t1 | XP_013453418.1 | 96.3 | 382 | 9 | 1 | 53 | 434 | 56 | 432 | 5.90E-195 | 690.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20372.t1 | Q8VYY4 | 63.9 | 374 | 125 | 4 | 58 | 424 | 33 | 403 | 1.1e-122 | 441.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20372.t1 | A0A072UCV8 | 96.3 | 382 | 9 | 1 | 53 | 434 | 56 | 432 | 4.2e-195 | 690.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20372 | MS.gene060557 | PPI |
| MS.gene038718 | MS.gene20372 | PPI |
| MS.gene20372 | MS.gene036870 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20372.t1 | MTR_5g011440 | 93.204 | 412 | 23 | 1 | 23 | 434 | 26 | 432 | 0.0 | 726 |
| MS.gene20372.t1 | MTR_5g011440 | 93.204 | 412 | 23 | 1 | 23 | 434 | 19 | 425 | 0.0 | 725 |
| MS.gene20372.t1 | MTR_5g011440 | 92.727 | 385 | 23 | 1 | 23 | 407 | 26 | 405 | 0.0 | 669 |
| MS.gene20372.t1 | MTR_5g011450 | 79.811 | 317 | 64 | 0 | 104 | 420 | 1 | 317 | 0.0 | 510 |
| MS.gene20372.t1 | MTR_7g053090 | 40.453 | 309 | 170 | 5 | 119 | 424 | 97 | 394 | 6.58e-62 | 206 |
| MS.gene20372.t1 | MTR_4g113090 | 36.102 | 313 | 189 | 5 | 113 | 425 | 97 | 398 | 4.62e-53 | 183 |
| MS.gene20372.t1 | MTR_2g073190 | 32.903 | 310 | 198 | 4 | 123 | 432 | 382 | 681 | 7.89e-40 | 151 |
| MS.gene20372.t1 | MTR_2g073070 | 37.445 | 227 | 136 | 3 | 206 | 432 | 20 | 240 | 1.10e-36 | 134 |
| MS.gene20372.t1 | MTR_2g078500 | 66.265 | 83 | 27 | 1 | 147 | 229 | 37 | 118 | 1.32e-30 | 114 |
| MS.gene20372.t1 | MTR_2g078490 | 66.667 | 66 | 21 | 1 | 146 | 211 | 342 | 406 | 1.76e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20372.t1 | AT4G22840 | 63.228 | 378 | 129 | 4 | 58 | 428 | 33 | 407 | 1.01e-163 | 467 |
| MS.gene20372.t1 | AT4G12030 | 58.333 | 384 | 154 | 2 | 49 | 427 | 25 | 407 | 2.29e-152 | 438 |
| MS.gene20372.t1 | AT4G12030 | 65.815 | 313 | 107 | 0 | 112 | 424 | 1 | 313 | 8.01e-150 | 428 |
| MS.gene20372.t1 | AT4G12030 | 67.407 | 270 | 88 | 0 | 155 | 424 | 1 | 270 | 1.16e-130 | 378 |
| MS.gene20372.t1 | AT4G12030 | 67.407 | 270 | 88 | 0 | 155 | 424 | 1 | 270 | 1.16e-130 | 378 |
| MS.gene20372.t1 | AT4G12030 | 67.407 | 270 | 88 | 0 | 155 | 424 | 1 | 270 | 1.16e-130 | 378 |
| MS.gene20372.t1 | AT3G25410 | 39.088 | 307 | 177 | 5 | 119 | 424 | 112 | 409 | 1.01e-60 | 204 |
| MS.gene20372.t1 | AT2G26900 | 33.681 | 383 | 227 | 9 | 43 | 424 | 40 | 396 | 2.33e-55 | 189 |
| MS.gene20372.t1 | AT1G78560 | 29.925 | 401 | 252 | 8 | 33 | 432 | 29 | 401 | 1.95e-46 | 165 |
Find 102 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATACTTTGCACCTGCTTT+AGG | 0.188507 | 5.1:+4862170 | MS.gene20372:intron |
| GTCAACTGCTTCTGCTGTTT+TGG | 0.219751 | 5.1:+4862675 | MS.gene20372:CDS |
| CTCTTATTGCTTCTGCTCAT+TGG | 0.278315 | 5.1:+4862706 | MS.gene20372:CDS |
| ATTATTGCAGTAACTGTCTT+TGG | 0.279697 | 5.1:+4862326 | MS.gene20372:CDS |
| TTTGTTGTGAAGCCTCTTCT+TGG | 0.285277 | 5.1:+4862290 | MS.gene20372:CDS |
| GATACTTTGCACCTGCTTTA+GGG | 0.306509 | 5.1:+4862171 | MS.gene20372:intron |
| ATTATGTCTTTGATGGGATT+TGG | 0.331570 | 5.1:+4863727 | MS.gene20372:CDS |
| ACTTCATTGAGGCATTTAAT+AGG | 0.332847 | 5.1:+4862234 | MS.gene20372:CDS |
| AGAAGCTGCATACTAATATT+AGG | 0.341587 | 5.1:-4860993 | None:intergenic |
| TCTTATTGCTTCTGCTCATT+GGG | 0.352000 | 5.1:+4862707 | MS.gene20372:CDS |
| GGGTATGCCTCCTGCAATTT+CGG | 0.354537 | 5.1:+4863303 | MS.gene20372:CDS |
| TGGGAATTTACCGAAATTGC+AGG | 0.366222 | 5.1:-4863313 | None:intergenic |
| GATGTCATTACTATGCTTAA+TGG | 0.367163 | 5.1:-4862649 | None:intergenic |
| GTATTGGTGGCTTGTGTTAG+TGG | 0.378566 | 5.1:+4862577 | MS.gene20372:CDS |
| GAGACGGAAGATTGATGATT+GGG | 0.383822 | 5.1:-4860898 | None:intergenic |
| TGCTTAATGGTGCCATTTGT+GGG | 0.389039 | 5.1:-4862636 | None:intergenic |
| CGTTGTAGTGGCTTTACATC+AGG | 0.390378 | 5.1:-4863122 | None:intergenic |
| GAATGATTCGGTGTCGGGTC+GGG | 0.403998 | 5.1:-4861172 | None:intergenic |
| ATGCTTAATGGTGCCATTTG+TGG | 0.405738 | 5.1:-4862637 | None:intergenic |
| AGACTGCCTATAGACGTAAA+AGG | 0.420084 | 5.1:+4862733 | MS.gene20372:CDS |
| AGTGTACTAGCAACGATTGC+AGG | 0.421902 | 5.1:-4861799 | None:intergenic |
| AGCACATTTCAGAGGAAGTC+TGG | 0.422299 | 5.1:-4861116 | None:intergenic |
| TTTGGTCTACCAACAGGAAT+AGG | 0.423456 | 5.1:+4862344 | MS.gene20372:CDS |
| CTTTAACATGGTTTACTACA+AGG | 0.424128 | 5.1:+4861845 | MS.gene20372:CDS |
| GCCTCCACTCTCCGTGTTGA+CGG | 0.424878 | 5.1:+4862950 | MS.gene20372:CDS |
| CTGTTGGCCTACTTCTAAAT+CGG | 0.425947 | 5.1:+4862797 | MS.gene20372:CDS |
| GACTGCAATTATGTCTTTGA+TGG | 0.426712 | 5.1:+4863720 | MS.gene20372:intron |
| AGAAGTAGGCCAACAGCAAT+AGG | 0.427037 | 5.1:-4862790 | None:intergenic |
| GAGAAGAATGATTCGGTGTC+GGG | 0.431370 | 5.1:-4861177 | None:intergenic |
| AACAAACTGGCCAAAGTAAC+CGG | 0.432343 | 5.1:-4862273 | None:intergenic |
| GAAATCGCCACCGGTTACTT+TGG | 0.435378 | 5.1:+4862263 | MS.gene20372:CDS |
| GACAGAAAACTTTGCTTCAC+CGG | 0.450309 | 5.1:-4861736 | None:intergenic |
| TTCTTTGAAGATCCAGTTGT+GGG | 0.455510 | 5.1:+4863283 | MS.gene20372:CDS |
| AATTCTACCGATTTAGAAGT+AGG | 0.461585 | 5.1:-4862804 | None:intergenic |
| GCAGGAGGCATACCCACAAC+TGG | 0.468143 | 5.1:-4863295 | None:intergenic |
| ACTGTCTTTGGTCTACCAAC+AGG | 0.470666 | 5.1:+4862338 | MS.gene20372:CDS |
| GGAGACGGAAGATTGATGAT+TGG | 0.476384 | 5.1:-4860899 | None:intergenic |
| CATTAGCGTCGTACAGTGGT+GGG | 0.481741 | 5.1:-4861202 | None:intergenic |
| CATTTCTCACCTATTCCTGT+TGG | 0.482415 | 5.1:-4862353 | None:intergenic |
| CGAACAATTTCCTTTGAGAC+AGG | 0.483447 | 5.1:+4863143 | MS.gene20372:CDS |
| TGGGGTCAATTCAAGTGAAA+AGG | 0.486568 | 5.1:+4862211 | MS.gene20372:CDS |
| AAGGAAATTGTTCGTTGTAG+TGG | 0.486811 | 5.1:-4863134 | None:intergenic |
| TGTTGTTGCAGTTGCAGTAT+CGG | 0.490620 | 5.1:-4860920 | None:intergenic |
| GAAGAGGCTTCACAACAAAC+TGG | 0.490918 | 5.1:-4862286 | None:intergenic |
| CATCTTCATCTTCATCACTC+TGG | 0.492287 | 5.1:-4860850 | None:intergenic |
| TAACCGGTGGCGATTTCTGC+CGG | 0.496289 | 5.1:-4862257 | None:intergenic |
| TTGACGGCAGCTATCTGTGC+TGG | 0.506226 | 5.1:+4862966 | MS.gene20372:CDS |
| ACTGCAATTATGTCTTTGAT+GGG | 0.516372 | 5.1:+4863721 | MS.gene20372:CDS |
| CTTCATCTTCATCACTCTGG+TGG | 0.518483 | 5.1:-4860847 | None:intergenic |
| ATCAGGCGCAGGGATGGTAT+TGG | 0.520885 | 5.1:+4862561 | MS.gene20372:intron |
| ATAGCTGGCTATATGCTAAG+TGG | 0.521600 | 5.1:+4863080 | MS.gene20372:CDS |
| GCAAAGTAGCCTCCTTGCCT+TGG | 0.521783 | 5.1:+4863246 | MS.gene20372:CDS |
| GTGGTGGTACCTATTGCTGT+TGG | 0.523359 | 5.1:+4862781 | MS.gene20372:CDS |
| CGGGTCGGGTTGGTGAGAAT+CGG | 0.531942 | 5.1:-4861158 | None:intergenic |
| GTAAACCATGTTAAAGAAGG+TGG | 0.532077 | 5.1:-4861838 | None:intergenic |
| CACTCAACATTAAGAGCAAG+TGG | 0.538447 | 5.1:-4862993 | None:intergenic |
| GATTCGGTGTCGGGTCGGGT+TGG | 0.538982 | 5.1:-4861168 | None:intergenic |
| AGAATGATTCGGTGTCGGGT+CGG | 0.540212 | 5.1:-4861173 | None:intergenic |
| GTAGTAAACCATGTTAAAGA+AGG | 0.543231 | 5.1:-4861841 | None:intergenic |
| GGTGGGAAGTTTGAATGCAA+AGG | 0.543981 | 5.1:-4860972 | None:intergenic |
| GCAACAAGATAGAAATTCCA+AGG | 0.546255 | 5.1:-4863028 | None:intergenic |
| TAAAACAGATATCCAAGAAG+AGG | 0.547296 | 5.1:-4862302 | None:intergenic |
| CATTGAGGCATTTAATAGGC+CGG | 0.551828 | 5.1:+4862238 | MS.gene20372:CDS |
| GCCTATAGACGTAAAAGGAA+TGG | 0.559133 | 5.1:+4862738 | MS.gene20372:CDS |
| TGAGAAGAATGATTCGGTGT+CGG | 0.559195 | 5.1:-4861178 | None:intergenic |
| TGAATGCAAAGGAATTGAGA+AGG | 0.560009 | 5.1:-4860961 | None:intergenic |
| GTGAGAATCGGAGAAGTTCG+TGG | 0.561447 | 5.1:-4861146 | None:intergenic |
| AGGCGCAGGGATGGTATTGG+TGG | 0.562527 | 5.1:+4862564 | MS.gene20372:intron |
| TCTTCCCACCTTCTTTAACA+TGG | 0.564423 | 5.1:+4861833 | MS.gene20372:CDS |
| TGCAGTTGCAGTATCGGAGA+CGG | 0.572895 | 5.1:-4860914 | None:intergenic |
| GTTCTTTGAAGATCCAGTTG+TGG | 0.577808 | 5.1:+4863282 | MS.gene20372:CDS |
| TCATTAGCGTCGTACAGTGG+TGG | 0.578045 | 5.1:-4861203 | None:intergenic |
| AAATGAATCAGGCGCAGGGA+TGG | 0.579253 | 5.1:+4862555 | MS.gene20372:intron |
| TATAAAAGCTGACAAATGAA+AGG | 0.582419 | 5.1:-4863060 | None:intergenic |
| GTGGGGTGAGAAGAATGATT+CGG | 0.586579 | 5.1:-4861184 | None:intergenic |
| AAAACTTGTACCTGTCTCAA+AGG | 0.587271 | 5.1:-4863153 | None:intergenic |
| GCTGCCGTCAACACGGAGAG+TGG | 0.594383 | 5.1:-4862954 | None:intergenic |
| TAAACCATGTTAAAGAAGGT+GGG | 0.594566 | 5.1:-4861837 | None:intergenic |
| AGCTGCATACTAATATTAGG+TGG | 0.598399 | 5.1:-4860990 | None:intergenic |
| AAGTGAAAAGGACTTCATTG+AGG | 0.599086 | 5.1:+4862223 | MS.gene20372:CDS |
| GAGTGTATTAAATCTCCCCT+TGG | 0.603743 | 5.1:+4863011 | MS.gene20372:CDS |
| CAACAAGATAGAAATTCCAA+GGG | 0.607845 | 5.1:-4863027 | None:intergenic |
| AGACGGAAGATTGATGATTG+GGG | 0.617192 | 5.1:-4860897 | None:intergenic |
| GAACTTATTAGCAAGAGCCA+AGG | 0.624774 | 5.1:-4863263 | None:intergenic |
| CGAATAGCATTGCAAATACG+AGG | 0.626785 | 5.1:-4862918 | None:intergenic |
| GCCGTCAACACGGAGAGTGG+AGG | 0.627500 | 5.1:-4862951 | None:intergenic |
| GCTGCATACTAATATTAGGT+GGG | 0.627684 | 5.1:-4860989 | None:intergenic |
| GTTTAGCATTACACAGATTG+TGG | 0.628061 | 5.1:+4862762 | MS.gene20372:CDS |
| TATTAGCAAGAGCCAAGGCA+AGG | 0.628931 | 5.1:-4863258 | None:intergenic |
| ATTAGCGTCGTACAGTGGTG+GGG | 0.636150 | 5.1:-4861201 | None:intergenic |
| GATGAAGCAGCACATTTCAG+AGG | 0.638965 | 5.1:-4861124 | None:intergenic |
| GGTGAAATGAATCAGGCGCA+GGG | 0.644484 | 5.1:+4862551 | MS.gene20372:intron |
| TAGCATTACACAGATTGTGG+TGG | 0.644972 | 5.1:+4862765 | MS.gene20372:CDS |
| GAATTTACCGAAATTGCAGG+AGG | 0.656389 | 5.1:-4863310 | None:intergenic |
| ACAGATAGCTGCCGTCAACA+CGG | 0.673704 | 5.1:-4862961 | None:intergenic |
| ATGAGCAGAAGCAATAAGAG+TGG | 0.680286 | 5.1:-4862703 | None:intergenic |
| GTACTAGCAACGATTGCAGG+AGG | 0.690202 | 5.1:-4861796 | None:intergenic |
| AGGCCGGCAGAAATCGCCAC+CGG | 0.692344 | 5.1:+4862254 | MS.gene20372:CDS |
| TAGCAAGAGCCAAGGCAAGG+AGG | 0.692627 | 5.1:-4863255 | None:intergenic |
| GCTTTACATCAGGAGAATCG+CGG | 0.699620 | 5.1:-4863112 | None:intergenic |
| AAACTGGCCAAAGTAACCGG+TGG | 0.716656 | 5.1:-4862270 | None:intergenic |
| AACAAGATAGAAATTCCAAG+GGG | 0.741788 | 5.1:-4863026 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTTAATTAGTATGAATT+AGG | + | chr5.1:4861271-4861290 | MS.gene20372:intron | 15.0% |
| !! | TTCTTAATTAGTATGAATTA+GGG | + | chr5.1:4861272-4861291 | MS.gene20372:intron | 15.0% |
| !! | TTGTTATATTGAAATATAAG+TGG | + | chr5.1:4863682-4863701 | MS.gene20372:intron | 15.0% |
| !! | AGAGTTACTTAAATAACATA+TGG | - | chr5.1:4863209-4863228 | None:intergenic | 20.0% |
| !! | ATTTGTTTGATAGATGAAAA+TGG | - | chr5.1:4863181-4863200 | None:intergenic | 20.0% |
| !! | TCTTAATTAGTATGAATTAG+GGG | + | chr5.1:4861273-4861292 | MS.gene20372:intron | 20.0% |
| !!! | AAATGCAAAGTTATTGTTTT+TGG | + | chr5.1:4863550-4863569 | MS.gene20372:intron | 20.0% |
| !!! | AAATTATGCTACTTTTCTAA+CGG | + | chr5.1:4862612-4862631 | MS.gene20372:CDS | 20.0% |
| !!! | ATTATCTTTTGTTATGGAAA+TGG | + | chr5.1:4861470-4861489 | MS.gene20372:intron | 20.0% |
| !!! | CTTTCAATTATCTTTTGTTA+TGG | + | chr5.1:4861464-4861483 | MS.gene20372:intron | 20.0% |
| !!! | GTCAAATAAACTCTTTAAAA+TGG | + | chr5.1:4861593-4861612 | MS.gene20372:intron | 20.0% |
| !!! | TATATTTTCATTCTAATACG+AGG | - | chr5.1:4861245-4861264 | None:intergenic | 20.0% |
| ! | AAATAAAAACCAAGTAACGT+AGG | + | chr5.1:4861676-4861695 | MS.gene20372:intron | 25.0% |
| ! | AGTATTAGTGTTTCCTTTAA+GGG | + | chr5.1:4862855-4862874 | MS.gene20372:intron | 25.0% |
| ! | CAATAACAATTATATACCCT+GGG | + | chr5.1:4863351-4863370 | MS.gene20372:intron | 25.0% |
| ! | TATAAAAGCTGACAAATGAA+AGG | - | chr5.1:4863063-4863082 | None:intergenic | 25.0% |
| ! | TTACTTAAATAACATATGGC+AGG | - | chr5.1:4863205-4863224 | None:intergenic | 25.0% |
| ! | TTTAGTCAAATTTATGCCTT+CGG | - | chr5.1:4862485-4862504 | None:intergenic | 25.0% |
| ! | TTTGTGTTTCAGATATTAGT+AGG | - | chr5.1:4862070-4862089 | None:intergenic | 25.0% |
| !! | ATCTACTTTCTAACTTTTTG+AGG | + | chr5.1:4862530-4862549 | MS.gene20372:intron | 25.0% |
| !! | TGTGTATTTTCTAGATGAAT+TGG | + | chr5.1:4861870-4861889 | MS.gene20372:intron | 25.0% |
| !!! | GTGCTTTTTTTTTTTCAGTT+CGG | + | chr5.1:4861074-4861093 | MS.gene20372:intron | 25.0% |
| !!! | TTTTTTTTTTTCAGTTCGGT+TGG | + | chr5.1:4861078-4861097 | MS.gene20372:intron | 25.0% |
| AAACACGGTCAAACTTAAAA+AGG | - | chr5.1:4862421-4862440 | None:intergenic | 30.0% | |
| AACAAGATAGAAATTCCAAG+GGG | - | chr5.1:4863029-4863048 | None:intergenic | 30.0% | |
| AATAAACCATGTTAAGCATC+TGG | - | chr5.1:4861520-4861539 | None:intergenic | 30.0% | |
| AATATTAGAAAGAGAGCTAG+CGG | + | chr5.1:4862506-4862525 | MS.gene20372:intron | 30.0% | |
| ACTGCAATTATGTCTTTGAT+GGG | + | chr5.1:4863721-4863740 | MS.gene20372:CDS | 30.0% | |
| AGAAGCTGCATACTAATATT+AGG | - | chr5.1:4860996-4861015 | None:intergenic | 30.0% | |
| ATAATTACTACGTGATGTAC+TGG | + | chr5.1:4862146-4862165 | MS.gene20372:intron | 30.0% | |
| ATGCAAATGCAAATGCAAAA+TGG | + | chr5.1:4862029-4862048 | MS.gene20372:intron | 30.0% | |
| ATTATGTCTTTGATGGGATT+TGG | + | chr5.1:4863727-4863746 | MS.gene20372:CDS | 30.0% | |
| ATTATTGCAGTAACTGTCTT+TGG | + | chr5.1:4862326-4862345 | MS.gene20372:CDS | 30.0% | |
| ATTGGAGTCTAATCAGAATT+GGG | - | chr5.1:4863335-4863354 | None:intergenic | 30.0% | |
| CAACAAGATAGAAATTCCAA+GGG | - | chr5.1:4863030-4863049 | None:intergenic | 30.0% | |
| CAGTATTAGTGTTTCCTTTA+AGG | + | chr5.1:4862854-4862873 | MS.gene20372:intron | 30.0% | |
| CCAATAACAATTATATACCC+TGG | + | chr5.1:4863350-4863369 | MS.gene20372:intron | 30.0% | |
| CCAGGGTATATAATTGTTAT+TGG | - | chr5.1:4863353-4863372 | None:intergenic | 30.0% | |
| CTTTAACATGGTTTACTACA+AGG | + | chr5.1:4861845-4861864 | MS.gene20372:CDS | 30.0% | |
| GATGTCATTACTATGCTTAA+TGG | - | chr5.1:4862652-4862671 | None:intergenic | 30.0% | |
| GTAGTAAACCATGTTAAAGA+AGG | - | chr5.1:4861844-4861863 | None:intergenic | 30.0% | |
| TAAAACAGATATCCAAGAAG+AGG | - | chr5.1:4862305-4862324 | None:intergenic | 30.0% | |
| TAAACCATGTTAAAGAAGGT+GGG | - | chr5.1:4861840-4861859 | None:intergenic | 30.0% | |
| TAAGAATACAACACCCTTAA+AGG | - | chr5.1:4862871-4862890 | None:intergenic | 30.0% | |
| TATTGGAGTCTAATCAGAAT+TGG | - | chr5.1:4863336-4863355 | None:intergenic | 30.0% | |
| ! | ACTTCATTGAGGCATTTAAT+AGG | + | chr5.1:4862234-4862253 | MS.gene20372:CDS | 30.0% |
| ! | GCATTTGCATTTGCATTTTA+AGG | - | chr5.1:4862025-4862044 | None:intergenic | 30.0% |
| !! | AATTCTACCGATTTAGAAGT+AGG | - | chr5.1:4862807-4862826 | None:intergenic | 30.0% |
| !! | GCATTTTAGTGAAATTGATC+TGG | + | chr5.1:4861928-4861947 | MS.gene20372:intron | 30.0% |
| !! | GTTTTGATATGGAACAAAAG+TGG | + | chr5.1:4863754-4863773 | MS.gene20372:CDS | 30.0% |
| !! | TCATGCAAACTTGTTTTCTA+TGG | + | chr5.1:4861616-4861635 | MS.gene20372:intron | 30.0% |
| !! | TTTTTGGTCAAGAAAGTAGA+AGG | + | chr5.1:4863566-4863585 | MS.gene20372:intron | 30.0% |
| !!! | GATTTGGTCTTGTTTTGATA+TGG | + | chr5.1:4863743-4863762 | MS.gene20372:CDS | 30.0% |
| !!! | TCAAGTGATTTTTAGCAATG+AGG | + | chr5.1:4861951-4861970 | MS.gene20372:intron | 30.0% |
| !!! | TTTTTGAGGTGAAATGAATC+AGG | + | chr5.1:4862544-4862563 | MS.gene20372:intron | 30.0% |
| AAAACTTGTACCTGTCTCAA+AGG | - | chr5.1:4863156-4863175 | None:intergenic | 35.0% | |
| AACATCAAAAACCCTAAAGC+AGG | - | chr5.1:4862185-4862204 | None:intergenic | 35.0% | |
| AACTCTTCATTGCAAACACA+CGG | + | chr5.1:4863498-4863517 | MS.gene20372:intron | 35.0% | |
| AAGGAAATTGTTCGTTGTAG+TGG | - | chr5.1:4863137-4863156 | None:intergenic | 35.0% | |
| AAGTGAAAAGGACTTCATTG+AGG | + | chr5.1:4862223-4862242 | MS.gene20372:CDS | 35.0% | |
| AGCTGCATACTAATATTAGG+TGG | - | chr5.1:4860993-4861012 | None:intergenic | 35.0% | |
| ATATTAGAAAGAGAGCTAGC+GGG | + | chr5.1:4862507-4862526 | MS.gene20372:intron | 35.0% | |
| GAATAGGTGAGAAATGAGAA+TGG | + | chr5.1:4862360-4862379 | MS.gene20372:intron | 35.0% | |
| GACTGCAATTATGTCTTTGA+TGG | + | chr5.1:4863720-4863739 | MS.gene20372:intron | 35.0% | |
| GCAACAAGATAGAAATTCCA+AGG | - | chr5.1:4863031-4863050 | None:intergenic | 35.0% | |
| GCTGCATACTAATATTAGGT+GGG | - | chr5.1:4860992-4861011 | None:intergenic | 35.0% | |
| GTAAACCATGTTAAAGAAGG+TGG | - | chr5.1:4861841-4861860 | None:intergenic | 35.0% | |
| GTTTAGCATTACACAGATTG+TGG | + | chr5.1:4862762-4862781 | MS.gene20372:CDS | 35.0% | |
| TCTTATTGCTTCTGCTCATT+GGG | + | chr5.1:4862707-4862726 | MS.gene20372:CDS | 35.0% | |
| TGAATGCAAAGGAATTGAGA+AGG | - | chr5.1:4860964-4860983 | None:intergenic | 35.0% | |
| TGCAGACACATACATATAGT+CGG | - | chr5.1:4863420-4863439 | None:intergenic | 35.0% | |
| TTTACACCAGATGCTTAACA+TGG | + | chr5.1:4861511-4861530 | MS.gene20372:intron | 35.0% | |
| ! | ACCATTCCTTTTACGTCTAT+AGG | - | chr5.1:4862742-4862761 | None:intergenic | 35.0% |
| ! | CATTTGTCAGCTTTTATAGC+TGG | + | chr5.1:4863065-4863084 | MS.gene20372:CDS | 35.0% |
| ! | GGTTTTTGATGTTTGCAGTT+GGG | + | chr5.1:4862192-4862211 | MS.gene20372:CDS | 35.0% |
| ! | GTTTTTGATGTTTGCAGTTG+GGG | + | chr5.1:4862193-4862212 | MS.gene20372:CDS | 35.0% |
| ! | TTCTTTGAAGATCCAGTTGT+GGG | + | chr5.1:4863283-4863302 | MS.gene20372:CDS | 35.0% |
| ! | TTTAAGTTTGACCGTGTTTC+TGG | + | chr5.1:4862422-4862441 | MS.gene20372:intron | 35.0% |
| !! | TAAGCTGTTTTCGTAAGTTC+CGG | - | chr5.1:4861352-4861371 | None:intergenic | 35.0% |
| !!! | TTTTTTTTCAGTTCGGTTGG+CGG | + | chr5.1:4861081-4861100 | MS.gene20372:intron | 35.0% |
| AACAAACTGGCCAAAGTAAC+CGG | - | chr5.1:4862276-4862295 | None:intergenic | 40.0% | |
| AAGCATCTGGTGTAAAATGC+AGG | - | chr5.1:4861507-4861526 | None:intergenic | 40.0% | |
| ACTTGTGTGAGATTGTTTGC+CGG | + | chr5.1:4861330-4861349 | MS.gene20372:intron | 40.0% | |
| AGACTGCCTATAGACGTAAA+AGG | + | chr5.1:4862733-4862752 | MS.gene20372:CDS | 40.0% | |
| AGATACTTTGCACCTGCTTT+AGG | + | chr5.1:4862170-4862189 | MS.gene20372:intron | 40.0% | |
| AGTGCTTATGTCTTCAGGTA+AGG | + | chr5.1:4861571-4861590 | MS.gene20372:intron | 40.0% | |
| ATAGCTGGCTATATGCTAAG+TGG | + | chr5.1:4863080-4863099 | MS.gene20372:CDS | 40.0% | |
| ATGAGCAGAAGCAATAAGAG+TGG | - | chr5.1:4862706-4862725 | None:intergenic | 40.0% | |
| CAATCATGTCCTACGTTACT+TGG | - | chr5.1:4861688-4861707 | None:intergenic | 40.0% | |
| CACTCAACATTAAGAGCAAG+TGG | - | chr5.1:4862996-4863015 | None:intergenic | 40.0% | |
| CATCTTCATCTTCATCACTC+TGG | - | chr5.1:4860853-4860872 | None:intergenic | 40.0% | |
| CATTTCTCACCTATTCCTGT+TGG | - | chr5.1:4862356-4862375 | None:intergenic | 40.0% | |
| CCAGAACTAATCCAGAAACA+CGG | - | chr5.1:4862436-4862455 | None:intergenic | 40.0% | |
| CGAATAGCATTGCAAATACG+AGG | - | chr5.1:4862921-4862940 | None:intergenic | 40.0% | |
| CTAGATGACTAGATAAGAGC+TGG | - | chr5.1:4861985-4862004 | None:intergenic | 40.0% | |
| CTCTTATTGCTTCTGCTCAT+TGG | + | chr5.1:4862706-4862725 | MS.gene20372:CDS | 40.0% | |
| GAACTTATTAGCAAGAGCCA+AGG | - | chr5.1:4863266-4863285 | None:intergenic | 40.0% | |
| GAATTTACCGAAATTGCAGG+AGG | - | chr5.1:4863313-4863332 | None:intergenic | 40.0% | |
| GACAGAAAACTTTGCTTCAC+CGG | - | chr5.1:4861739-4861758 | None:intergenic | 40.0% | |
| GAGTAAGTGCTTATGTCTTC+AGG | + | chr5.1:4861566-4861585 | MS.gene20372:intron | 40.0% | |
| GAGTGTATTAAATCTCCCCT+TGG | + | chr5.1:4863011-4863030 | MS.gene20372:CDS | 40.0% | |
| GATACTTTGCACCTGCTTTA+GGG | + | chr5.1:4862171-4862190 | MS.gene20372:intron | 40.0% | |
| GCCTATAGACGTAAAAGGAA+TGG | + | chr5.1:4862738-4862757 | MS.gene20372:CDS | 40.0% | |
| GGTTTATTACCTCGTTGTGT+TGG | + | chr5.1:4863526-4863545 | MS.gene20372:intron | 40.0% | |
| GTCAAATTTATGCCTTCGGT+CGG | - | chr5.1:4862481-4862500 | None:intergenic | 40.0% | |
| GTTTCATTTCTTTCCTCAGC+CGG | + | chr5.1:4861717-4861736 | MS.gene20372:intron | 40.0% | |
| TAGCATTACACAGATTGTGG+TGG | + | chr5.1:4862765-4862784 | MS.gene20372:CDS | 40.0% | |
| TCTTCCCACCTTCTTTAACA+TGG | + | chr5.1:4861833-4861852 | MS.gene20372:CDS | 40.0% | |
| TGGGAATTTACCGAAATTGC+AGG | - | chr5.1:4863316-4863335 | None:intergenic | 40.0% | |
| TGGGGTCAATTCAAGTGAAA+AGG | + | chr5.1:4862211-4862230 | MS.gene20372:CDS | 40.0% | |
| TGTTGTTGCAGTTGCAGTAT+CGG | - | chr5.1:4860923-4860942 | None:intergenic | 40.0% | |
| TTAAGTTTCTAACCGACCGA+AGG | + | chr5.1:4862466-4862485 | MS.gene20372:intron | 40.0% | |
| TTTGGTCTACCAACAGGAAT+AGG | + | chr5.1:4862344-4862363 | MS.gene20372:CDS | 40.0% | |
| ! | AGACGGAAGATTGATGATTG+GGG | - | chr5.1:4860900-4860919 | None:intergenic | 40.0% |
| ! | CATTGAGGCATTTAATAGGC+CGG | + | chr5.1:4862238-4862257 | MS.gene20372:CDS | 40.0% |
| ! | CTGTTGGCCTACTTCTAAAT+CGG | + | chr5.1:4862797-4862816 | MS.gene20372:CDS | 40.0% |
| ! | GAGACGGAAGATTGATGATT+GGG | - | chr5.1:4860901-4860920 | None:intergenic | 40.0% |
| ! | GGGTTTTTGATGTTTGCAGT+TGG | + | chr5.1:4862191-4862210 | MS.gene20372:CDS | 40.0% |
| ! | GTTCTTTGAAGATCCAGTTG+TGG | + | chr5.1:4863282-4863301 | MS.gene20372:CDS | 40.0% |
| ! | TTGCATTTTCCAACACAACG+AGG | - | chr5.1:4863538-4863557 | None:intergenic | 40.0% |
| ! | TTTGTTGTGAAGCCTCTTCT+TGG | + | chr5.1:4862290-4862309 | MS.gene20372:CDS | 40.0% |
| !! | ATGCTTAATGGTGCCATTTG+TGG | - | chr5.1:4862640-4862659 | None:intergenic | 40.0% |
| !! | CGAACAATTTCCTTTGAGAC+AGG | + | chr5.1:4863143-4863162 | MS.gene20372:CDS | 40.0% |
| !! | TGAGAAGAATGATTCGGTGT+CGG | - | chr5.1:4861181-4861200 | None:intergenic | 40.0% |
| !! | TGCTTAATGGTGCCATTTGT+GGG | - | chr5.1:4862639-4862658 | None:intergenic | 40.0% |
| !! | TTTTCTAACGGACCCACAAA+TGG | + | chr5.1:4862624-4862643 | MS.gene20372:CDS | 40.0% |
| ACTGTCTTTGGTCTACCAAC+AGG | + | chr5.1:4862338-4862357 | MS.gene20372:CDS | 45.0% | |
| AGAAGTAGGCCAACAGCAAT+AGG | - | chr5.1:4862793-4862812 | None:intergenic | 45.0% | |
| AGCACATTTCAGAGGAAGTC+TGG | - | chr5.1:4861119-4861138 | None:intergenic | 45.0% | |
| AGTAACTCTTCTCCAACTGC+AGG | + | chr5.1:4863220-4863239 | MS.gene20372:intron | 45.0% | |
| AGTGTACTAGCAACGATTGC+AGG | - | chr5.1:4861802-4861821 | None:intergenic | 45.0% | |
| CAAGAACGCTTATACTCCCA+GGG | - | chr5.1:4863370-4863389 | None:intergenic | 45.0% | |
| CATTGCAAACACACGGCATT+GGG | + | chr5.1:4863505-4863524 | MS.gene20372:intron | 45.0% | |
| CTACTTTGCATTCCTGCAGT+TGG | - | chr5.1:4863235-4863254 | None:intergenic | 45.0% | |
| CTTCATCTTCATCACTCTGG+TGG | - | chr5.1:4860850-4860869 | None:intergenic | 45.0% | |
| GAAGAGGCTTCACAACAAAC+TGG | - | chr5.1:4862289-4862308 | None:intergenic | 45.0% | |
| GATGAAGCAGCACATTTCAG+AGG | - | chr5.1:4861127-4861146 | None:intergenic | 45.0% | |
| GCTTTACATCAGGAGAATCG+CGG | - | chr5.1:4863115-4863134 | None:intergenic | 45.0% | |
| GGTGGGAAGTTTGAATGCAA+AGG | - | chr5.1:4860975-4860994 | None:intergenic | 45.0% | |
| GTGGGGTGAGAAGAATGATT+CGG | - | chr5.1:4861187-4861206 | None:intergenic | 45.0% | |
| TATTAGCAAGAGCCAAGGCA+AGG | - | chr5.1:4863261-4863280 | None:intergenic | 45.0% | |
| TCAAGAACGCTTATACTCCC+AGG | - | chr5.1:4863371-4863390 | None:intergenic | 45.0% | |
| TCATTGCAAACACACGGCAT+TGG | + | chr5.1:4863504-4863523 | MS.gene20372:intron | 45.0% | |
| TGATCATTAGCGTCGTACAG+TGG | - | chr5.1:4861209-4861228 | None:intergenic | 45.0% | |
| ! | CGTTGTAGTGGCTTTACATC+AGG | - | chr5.1:4863125-4863144 | None:intergenic | 45.0% |
| ! | GGAGACGGAAGATTGATGAT+TGG | - | chr5.1:4860902-4860921 | None:intergenic | 45.0% |
| ! | GTATTGGTGGCTTGTGTTAG+TGG | + | chr5.1:4862577-4862596 | MS.gene20372:CDS | 45.0% |
| !! | CCGTGTTTCTGGATTAGTTC+TGG | + | chr5.1:4862433-4862452 | MS.gene20372:intron | 45.0% |
| !! | GAGAAGAATGATTCGGTGTC+GGG | - | chr5.1:4861180-4861199 | None:intergenic | 45.0% |
| !! | GTCAACTGCTTCTGCTGTTT+TGG | + | chr5.1:4862675-4862694 | MS.gene20372:CDS | 45.0% |
| !! | TAGTAATTATAATAAATTAA+TGG | - | chr5.1:4862136-4862155 | None:intergenic | 5.0% |
| AAACTGGCCAAAGTAACCGG+TGG | - | chr5.1:4862273-4862292 | None:intergenic | 50.0% | |
| AAATGAATCAGGCGCAGGGA+TGG | + | chr5.1:4862555-4862574 | MS.gene20372:intron | 50.0% | |
| ACAGATAGCTGCCGTCAACA+CGG | - | chr5.1:4862964-4862983 | None:intergenic | 50.0% | |
| ACGGAGAGTGGAGGCAAAAA+TGG | - | chr5.1:4862945-4862964 | None:intergenic | 50.0% | |
| AGGTGAAATGAATCAGGCGC+AGG | + | chr5.1:4862550-4862569 | MS.gene20372:intron | 50.0% | |
| ATTAGCGTCGTACAGTGGTG+GGG | - | chr5.1:4861204-4861223 | None:intergenic | 50.0% | |
| CATTAGCGTCGTACAGTGGT+GGG | - | chr5.1:4861205-4861224 | None:intergenic | 50.0% | |
| GGGTATGCCTCCTGCAATTT+CGG | + | chr5.1:4863303-4863322 | MS.gene20372:CDS | 50.0% | |
| GGTGAAATGAATCAGGCGCA+GGG | + | chr5.1:4862551-4862570 | MS.gene20372:intron | 50.0% | |
| GTACTAGCAACGATTGCAGG+AGG | - | chr5.1:4861799-4861818 | None:intergenic | 50.0% | |
| GTGAGAATCGGAGAAGTTCG+TGG | - | chr5.1:4861149-4861168 | None:intergenic | 50.0% | |
| GTGGTGGTACCTATTGCTGT+TGG | + | chr5.1:4862781-4862800 | MS.gene20372:CDS | 50.0% | |
| TCATTAGCGTCGTACAGTGG+TGG | - | chr5.1:4861206-4861225 | None:intergenic | 50.0% | |
| ! | AAACTTTGCTTCACCGGCTG+AGG | - | chr5.1:4861733-4861752 | None:intergenic | 50.0% |
| ! | GAAATCGCCACCGGTTACTT+TGG | + | chr5.1:4862263-4862282 | MS.gene20372:CDS | 50.0% |
| ! | TGCAGTTGCAGTATCGGAGA+CGG | - | chr5.1:4860917-4860936 | None:intergenic | 50.0% |
| !! | AGAATGATTCGGTGTCGGGT+CGG | - | chr5.1:4861176-4861195 | None:intergenic | 50.0% |
| !! | TTTTTCAGTTCGGTTGGCGG+TGG | + | chr5.1:4861084-4861103 | MS.gene20372:intron | 50.0% |
| ATCAGGCGCAGGGATGGTAT+TGG | + | chr5.1:4862561-4862580 | MS.gene20372:intron | 55.0% | |
| GCAAAGTAGCCTCCTTGCCT+TGG | + | chr5.1:4863246-4863265 | MS.gene20372:CDS | 55.0% | |
| TAACCGGTGGCGATTTCTGC+CGG | - | chr5.1:4862260-4862279 | None:intergenic | 55.0% | |
| TAGCAAGAGCCAAGGCAAGG+AGG | - | chr5.1:4863258-4863277 | None:intergenic | 55.0% | |
| TTGACGGCAGCTATCTGTGC+TGG | + | chr5.1:4862966-4862985 | MS.gene20372:CDS | 55.0% | |
| !! | GAATGATTCGGTGTCGGGTC+GGG | - | chr5.1:4861175-4861194 | None:intergenic | 55.0% |
| GCCTCCACTCTCCGTGTTGA+CGG | + | chr5.1:4862950-4862969 | MS.gene20372:CDS | 60.0% | |
| ! | AGGCGCAGGGATGGTATTGG+TGG | + | chr5.1:4862564-4862583 | MS.gene20372:intron | 60.0% |
| ! | GCAGGAGGCATACCCACAAC+TGG | - | chr5.1:4863298-4863317 | None:intergenic | 60.0% |
| !! | CGGGTCGGGTTGGTGAGAAT+CGG | - | chr5.1:4861161-4861180 | None:intergenic | 60.0% |
| AGGCCGGCAGAAATCGCCAC+CGG | + | chr5.1:4862254-4862273 | MS.gene20372:CDS | 65.0% | |
| GCCGTCAACACGGAGAGTGG+AGG | - | chr5.1:4862954-4862973 | None:intergenic | 65.0% | |
| GCTGCCGTCAACACGGAGAG+TGG | - | chr5.1:4862957-4862976 | None:intergenic | 65.0% | |
| !! | GATTCGGTGTCGGGTCGGGT+TGG | - | chr5.1:4861171-4861190 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 4860816 | 4863804 | 4860816 | ID=MS.gene20372 |
| chr5.1 | mRNA | 4860816 | 4863804 | 4860816 | ID=MS.gene20372.t1;Parent=MS.gene20372 |
| chr5.1 | exon | 4860816 | 4861002 | 4860816 | ID=MS.gene20372.t1.exon1;Parent=MS.gene20372.t1 |
| chr5.1 | CDS | 4860816 | 4861002 | 4860816 | ID=cds.MS.gene20372.t1;Parent=MS.gene20372.t1 |
| chr5.1 | exon | 4861092 | 4861210 | 4861092 | ID=MS.gene20372.t1.exon2;Parent=MS.gene20372.t1 |
| chr5.1 | CDS | 4861092 | 4861210 | 4861092 | ID=cds.MS.gene20372.t1;Parent=MS.gene20372.t1 |
| chr5.1 | exon | 4861736 | 4861866 | 4861736 | ID=MS.gene20372.t1.exon3;Parent=MS.gene20372.t1 |
| chr5.1 | CDS | 4861736 | 4861866 | 4861736 | ID=cds.MS.gene20372.t1;Parent=MS.gene20372.t1 |
| chr5.1 | exon | 4862172 | 4862365 | 4862172 | ID=MS.gene20372.t1.exon4;Parent=MS.gene20372.t1 |
| chr5.1 | CDS | 4862172 | 4862365 | 4862172 | ID=cds.MS.gene20372.t1;Parent=MS.gene20372.t1 |
| chr5.1 | exon | 4862566 | 4862818 | 4862566 | ID=MS.gene20372.t1.exon5;Parent=MS.gene20372.t1 |
| chr5.1 | CDS | 4862566 | 4862818 | 4862566 | ID=cds.MS.gene20372.t1;Parent=MS.gene20372.t1 |
| chr5.1 | exon | 4862911 | 4863164 | 4862911 | ID=MS.gene20372.t1.exon6;Parent=MS.gene20372.t1 |
| chr5.1 | CDS | 4862911 | 4863164 | 4862911 | ID=cds.MS.gene20372.t1;Parent=MS.gene20372.t1 |
| chr5.1 | exon | 4863242 | 4863324 | 4863242 | ID=MS.gene20372.t1.exon7;Parent=MS.gene20372.t1 |
| chr5.1 | CDS | 4863242 | 4863324 | 4863242 | ID=cds.MS.gene20372.t1;Parent=MS.gene20372.t1 |
| chr5.1 | exon | 4863721 | 4863804 | 4863721 | ID=MS.gene20372.t1.exon8;Parent=MS.gene20372.t1 |
| chr5.1 | CDS | 4863721 | 4863804 | 4863721 | ID=cds.MS.gene20372.t1;Parent=MS.gene20372.t1 |
| Gene Sequence |
| Protein sequence |
