Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20373.t1 | RHN53681.1 | 98.8 | 330 | 4 | 0 | 1 | 330 | 98 | 427 | 4.20E-169 | 604 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20373.t1 | B8BDK4 | 66.7 | 321 | 107 | 0 | 1 | 321 | 77 | 397 | 7.9e-116 | 418.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20373.t1 | G7KEV9 | 98.8 | 330 | 4 | 0 | 1 | 330 | 1 | 330 | 3.0e-169 | 604.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene20373 | MS.gene038718 | PPI |
| MS.gene20373 | MS.gene036870 | PPI |
| MS.gene20373 | MS.gene060557 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20373.t1 | MTR_5g011450 | 98.788 | 330 | 4 | 0 | 1 | 330 | 1 | 330 | 0.0 | 634 |
| MS.gene20373.t1 | MTR_5g011440 | 78.193 | 321 | 70 | 0 | 1 | 321 | 95 | 415 | 7.76e-178 | 499 |
| MS.gene20373.t1 | MTR_5g011440 | 78.193 | 321 | 70 | 0 | 1 | 321 | 102 | 422 | 8.89e-178 | 499 |
| MS.gene20373.t1 | MTR_5g011440 | 78.618 | 304 | 65 | 0 | 1 | 304 | 102 | 405 | 3.15e-168 | 474 |
| MS.gene20373.t1 | MTR_7g053090 | 42.020 | 307 | 168 | 5 | 16 | 321 | 97 | 394 | 1.91e-62 | 204 |
| MS.gene20373.t1 | MTR_4g113090 | 32.051 | 312 | 201 | 4 | 10 | 321 | 97 | 397 | 1.40e-45 | 160 |
| MS.gene20373.t1 | MTR_2g073190 | 33.333 | 300 | 190 | 4 | 20 | 319 | 382 | 671 | 7.37e-42 | 154 |
| MS.gene20373.t1 | MTR_2g078500 | 74.699 | 83 | 20 | 1 | 44 | 126 | 37 | 118 | 3.37e-37 | 129 |
| MS.gene20373.t1 | MTR_2g073070 | 36.087 | 230 | 140 | 4 | 99 | 327 | 16 | 239 | 1.52e-36 | 132 |
| MS.gene20373.t1 | MTR_2g078490 | 58.947 | 95 | 38 | 1 | 15 | 109 | 314 | 407 | 5.93e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20373.t1 | AT4G22840 | 66.254 | 323 | 108 | 1 | 3 | 325 | 86 | 407 | 1.01e-152 | 435 |
| MS.gene20373.t1 | AT4G12030 | 60.372 | 323 | 128 | 0 | 2 | 324 | 85 | 407 | 3.91e-139 | 400 |
| MS.gene20373.t1 | AT4G12030 | 60.759 | 316 | 124 | 0 | 9 | 324 | 1 | 316 | 6.92e-139 | 396 |
| MS.gene20373.t1 | AT4G12030 | 61.232 | 276 | 104 | 1 | 52 | 327 | 1 | 273 | 1.61e-119 | 345 |
| MS.gene20373.t1 | AT4G12030 | 61.232 | 276 | 104 | 1 | 52 | 327 | 1 | 273 | 1.61e-119 | 345 |
| MS.gene20373.t1 | AT4G12030 | 61.232 | 276 | 104 | 1 | 52 | 327 | 1 | 273 | 1.61e-119 | 345 |
| MS.gene20373.t1 | AT3G25410 | 40.125 | 319 | 175 | 6 | 10 | 321 | 100 | 409 | 5.68e-63 | 206 |
| MS.gene20373.t1 | AT2G26900 | 32.907 | 313 | 199 | 4 | 10 | 322 | 96 | 397 | 3.73e-47 | 164 |
| MS.gene20373.t1 | AT1G78560 | 29.936 | 314 | 210 | 4 | 13 | 326 | 95 | 398 | 1.29e-41 | 149 |
Find 57 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGTCATCTTTCGTATC+TGG | 0.253548 | 5.1:+4871273 | MS.gene20373:CDS |
| CTAATATTTGTAACGCTATT+CGG | 0.265425 | 5.1:+4871127 | MS.gene20373:CDS |
| ATAATATCAGGAAATTTATT+TGG | 0.265893 | 5.1:+4870626 | MS.gene20373:CDS |
| AGACTTCCTATCGATGTAAA+AGG | 0.325939 | 5.1:+4870945 | MS.gene20373:CDS |
| GTGCTTGTTCCTATCACATT+TGG | 0.327264 | 5.1:+4870993 | MS.gene20373:CDS |
| TATCTTCTTTGCATAATATC+AGG | 0.336822 | 5.1:+4870614 | MS.gene20373:CDS |
| TTTGTGGTGAAGCCTCTTCT+TGG | 0.340759 | 5.1:+4870590 | MS.gene20373:CDS |
| GATGTCATAACTATGCTTAA+TGG | 0.342890 | 5.1:-4870861 | None:intergenic |
| CGAATAGCGTTACAAATATT+AGG | 0.343902 | 5.1:-4871126 | None:intergenic |
| GTCTCCGCTTATGTCTTTGA+TGG | 0.359741 | 5.1:+4872098 | MS.gene20373:intron |
| ACTTCCTTGAGGCATTTAAC+AGG | 0.375791 | 5.1:+4870534 | MS.gene20373:CDS |
| GTATCTGGTTATATTCTTAG+TGG | 0.383721 | 5.1:+4871288 | MS.gene20373:CDS |
| CTCTGTAGTGGCTTCACATC+AGG | 0.384857 | 5.1:-4871330 | None:intergenic |
| GTATTGCTGGCTTGTGTTAG+TGG | 0.394186 | 5.1:+4870789 | MS.gene20373:CDS |
| TTTGGTCTACCATCAGCAAT+AGG | 0.399441 | 5.1:+4870644 | MS.gene20373:CDS |
| CATTTGGTCTACTTCTAAAT+CGG | 0.404279 | 5.1:+4871009 | MS.gene20373:CDS |
| TGGAGTTAATTCAAGTGAAA+AGG | 0.427672 | 5.1:+4870511 | MS.gene20373:CDS |
| TTCTTTGAAGATCCCGTTGT+CGG | 0.434911 | 5.1:+4871505 | MS.gene20373:CDS |
| AGGCGCAGGAATTGTATTGC+TGG | 0.440884 | 5.1:+4870776 | MS.gene20373:intron |
| ATGCTTAATGGTGCCATTTG+TGG | 0.441060 | 5.1:-4870849 | None:intergenic |
| AGCTTATGTTGGTCAGTTTG+TGG | 0.449656 | 5.1:+4870574 | MS.gene20373:CDS |
| TTTGCCTCCACTATCAGTAT+TGG | 0.451666 | 5.1:+4871155 | MS.gene20373:CDS |
| AGAAGTAGACCAAATGTGAT+AGG | 0.455467 | 5.1:-4871002 | None:intergenic |
| TTGGTTGCAGCTCTCTCTGC+AGG | 0.481902 | 5.1:+4871174 | MS.gene20373:CDS |
| GCAGAAGGCATACCGACAAC+GGG | 0.488370 | 5.1:-4871517 | None:intergenic |
| GCTGCAACCAATACTGATAG+TGG | 0.503530 | 5.1:-4871162 | None:intergenic |
| AAGGAAATTGTTCTCTGTAG+TGG | 0.503531 | 5.1:-4871342 | None:intergenic |
| AGAACAATTTCCTTTGAGAC+AGG | 0.506235 | 5.1:+4871351 | MS.gene20373:CDS |
| AGAATCTCCAAAATAGACAT+TGG | 0.516163 | 5.1:-4870251 | None:intergenic |
| TCTCCGCTTATGTCTTTGAT+GGG | 0.517610 | 5.1:+4872099 | MS.gene20373:CDS |
| GCAAAGTAGCCTCCTTGCCT+TGG | 0.521783 | 5.1:+4871468 | MS.gene20373:CDS |
| GGATATTTGATGTTTGCAGT+TGG | 0.525927 | 5.1:+4870491 | MS.gene20373:CDS |
| GTGCTAGCAAGGACTACATA+AGG | 0.527952 | 5.1:-4870296 | None:intergenic |
| AACATCAAATATCCTAGTGC+AGG | 0.529146 | 5.1:-4870482 | None:intergenic |
| AGATACTATGCTCCTGCACT+AGG | 0.533001 | 5.1:+4870470 | MS.gene20373:intron |
| CAAAGAAGATATCCAAGAAG+AGG | 0.541913 | 5.1:-4870602 | None:intergenic |
| TAAGCTGTGACAAGTTCTGC+TGG | 0.548696 | 5.1:-4870557 | None:intergenic |
| TCCTATCGATGTAAAAGGAA+TGG | 0.550521 | 5.1:+4870950 | MS.gene20373:CDS |
| ATCGCTATCCACTATTTCTG+CGG | 0.558329 | 5.1:+4870881 | MS.gene20373:CDS |
| TAAAGTTGTACCTGTCTCAA+AGG | 0.561214 | 5.1:-4871361 | None:intergenic |
| TGCAGAAGGCATACCGACAA+CGG | 0.565342 | 5.1:-4871518 | None:intergenic |
| AAACTTACAGAAATTGCAGA+AGG | 0.575076 | 5.1:-4871532 | None:intergenic |
| CCATCCTCACCTATTGCTGA+TGG | 0.581094 | 5.1:-4870653 | None:intergenic |
| GAACTTGTCACAGCTTATGT+TGG | 0.581638 | 5.1:+4870563 | MS.gene20373:CDS |
| GTAAACCACGTAAAAGAATG+TGG | 0.590600 | 5.1:-4870338 | None:intergenic |
| GCGCTACCAGTGTGCTAGCA+AGG | 0.596088 | 5.1:-4870307 | None:intergenic |
| TATTAGCAAGAGCCAAGGCA+AGG | 0.598369 | 5.1:-4871480 | None:intergenic |
| CTGGCCTGTTAAATGCCTCA+AGG | 0.612933 | 5.1:-4870538 | None:intergenic |
| GCTTCACATCAGGTGAGTCA+CGG | 0.613502 | 5.1:-4871320 | None:intergenic |
| GAATTTATTAGCAAGAGCCA+AGG | 0.620867 | 5.1:-4871485 | None:intergenic |
| AATCCCATCAAAGACATAAG+CGG | 0.624868 | 5.1:-4872102 | None:intergenic |
| TGTAGTCCTTGCTAGCACAC+TGG | 0.627989 | 5.1:+4870301 | MS.gene20373:CDS |
| TAAACCACGTAAAAGAATGT+GGG | 0.649335 | 5.1:-4870337 | None:intergenic |
| AAGTGAAAAGGACTTCCTTG+AGG | 0.680050 | 5.1:+4870523 | MS.gene20373:CDS |
| GCAACCAATACTGATAGTGG+AGG | 0.681094 | 5.1:-4871159 | None:intergenic |
| TAGCAAGAGCCAAGGCAAGG+AGG | 0.692627 | 5.1:-4871477 | None:intergenic |
| GATTTGATGTTAAGAGCGAG+TGG | 0.710228 | 5.1:-4871201 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAATCTGTTAAAAC+AGG | - | chr5.1:4872058-4872077 | None:intergenic | 15.0% |
| !! | ATAAAAAACAATAATAAGAG+TGG | - | chr5.1:4870918-4870937 | None:intergenic | 15.0% |
| !! | ATAATATCAGGAAATTTATT+TGG | + | chr5.1:4870626-4870645 | MS.gene20373:CDS | 15.0% |
| !!! | CTCTTATTATTGTTTTTTAT+CGG | + | chr5.1:4870918-4870937 | MS.gene20373:CDS | 15.0% |
| !!! | TCTTATTATTGTTTTTTATC+GGG | + | chr5.1:4870919-4870938 | MS.gene20373:CDS | 15.0% |
| !! | AAAAAGATAGAAAAACCAAA+GGG | - | chr5.1:4871237-4871256 | None:intergenic | 20.0% |
| !!! | AACATAAGTGTTTTCTTAAA+AGG | + | chr5.1:4871061-4871080 | MS.gene20373:intron | 20.0% |
| !!! | ACTTTAATTTCTCCATTTTT+TGG | + | chr5.1:4871378-4871397 | MS.gene20373:intron | 20.0% |
| ! | AAAAGATAGAAAAACCAAAG+GGG | - | chr5.1:4871236-4871255 | None:intergenic | 25.0% |
| ! | ATAAAGAGCAAGAAAAAACT+TGG | + | chr5.1:4872150-4872169 | MS.gene20373:CDS | 25.0% |
| ! | CAAAAAGATAGAAAAACCAA+AGG | - | chr5.1:4871238-4871257 | None:intergenic | 25.0% |
| ! | CTAATATTTGTAACGCTATT+CGG | + | chr5.1:4871127-4871146 | MS.gene20373:CDS | 25.0% |
| ! | TATCTTCTTTGCATAATATC+AGG | + | chr5.1:4870614-4870633 | MS.gene20373:CDS | 25.0% |
| !! | ATAAGTGTTTTCTTAAAAGG+TGG | + | chr5.1:4871064-4871083 | MS.gene20373:intron | 25.0% |
| !! | TCAAAAACCAATGTCTATTT+TGG | + | chr5.1:4870244-4870263 | MS.gene20373:CDS | 25.0% |
| !!! | AGTTTTAAGAAAGAAGTTCA+GGG | - | chr5.1:4870741-4870760 | None:intergenic | 25.0% |
| AAACTTACAGAAATTGCAGA+AGG | - | chr5.1:4871535-4871554 | None:intergenic | 30.0% | |
| AAAGATAGAAAAACCAAAGG+GGG | - | chr5.1:4871235-4871254 | None:intergenic | 30.0% | |
| AATGTAATCCTCATATCGAA+AGG | - | chr5.1:4871782-4871801 | None:intergenic | 30.0% | |
| AGAATCTCCAAAATAGACAT+TGG | - | chr5.1:4870254-4870273 | None:intergenic | 30.0% | |
| ATCCTGAAAACTGACATAAT+AGG | - | chr5.1:4870713-4870732 | None:intergenic | 30.0% | |
| CATCTATGACTATATTGCTA+CGG | - | chr5.1:4871975-4871994 | None:intergenic | 30.0% | |
| CATTTGGTCTACTTCTAAAT+CGG | + | chr5.1:4871009-4871028 | MS.gene20373:CDS | 30.0% | |
| CGAATAGCGTTACAAATATT+AGG | - | chr5.1:4871129-4871148 | None:intergenic | 30.0% | |
| CTTCTTTCTTAAAACTCCTT+TGG | + | chr5.1:4870745-4870764 | MS.gene20373:intron | 30.0% | |
| GATATGAGGATTACATTAGA+GGG | + | chr5.1:4871785-4871804 | MS.gene20373:intron | 30.0% | |
| GATGTCATAACTATGCTTAA+TGG | - | chr5.1:4870864-4870883 | None:intergenic | 30.0% | |
| GATTTATAACCAACAGAGAA+TGG | + | chr5.1:4871690-4871709 | MS.gene20373:intron | 30.0% | |
| GTATCTGGTTATATTCTTAG+TGG | + | chr5.1:4871288-4871307 | MS.gene20373:CDS | 30.0% | |
| GTTCCTATCCAAAGAAAAAA+GGG | - | chr5.1:4870680-4870699 | None:intergenic | 30.0% | |
| TAAACCACGTAAAAGAATGT+GGG | - | chr5.1:4870340-4870359 | None:intergenic | 30.0% | |
| TGGAGTTAATTCAAGTGAAA+AGG | + | chr5.1:4870511-4870530 | MS.gene20373:CDS | 30.0% | |
| TGTTCCTATCCAAAGAAAAA+AGG | - | chr5.1:4870681-4870700 | None:intergenic | 30.0% | |
| ! | AACCTATTATGTCAGTTTTC+AGG | + | chr5.1:4870708-4870727 | MS.gene20373:intron | 30.0% |
| ! | GATTTTCTCTTGTTCTGATT+TGG | + | chr5.1:4872121-4872140 | MS.gene20373:CDS | 30.0% |
| ! | TTTTCTATCAGATCCACAAA+TGG | + | chr5.1:4870836-4870855 | MS.gene20373:CDS | 30.0% |
| !!! | GAGTTTTAAGAAAGAAGTTC+AGG | - | chr5.1:4870742-4870761 | None:intergenic | 30.0% |
| AAATCAGTTAAATCCCCCTT+TGG | + | chr5.1:4871219-4871238 | MS.gene20373:CDS | 35.0% | |
| AAATTCATTTGTCCAACTGC+AGG | + | chr5.1:4871442-4871461 | MS.gene20373:intron | 35.0% | |
| AACATCAAATATCCTAGTGC+AGG | - | chr5.1:4870485-4870504 | None:intergenic | 35.0% | |
| AAGCTACTACAAACATCTGA+TGG | - | chr5.1:4871405-4871424 | None:intergenic | 35.0% | |
| AAGGAAATTGTTCTCTGTAG+TGG | - | chr5.1:4871345-4871364 | None:intergenic | 35.0% | |
| AATCCCATCAAAGACATAAG+CGG | - | chr5.1:4872105-4872124 | None:intergenic | 35.0% | |
| AGAAGTAGACCAAATGTGAT+AGG | - | chr5.1:4871005-4871024 | None:intergenic | 35.0% | |
| AGACTTCCTATCGATGTAAA+AGG | + | chr5.1:4870945-4870964 | MS.gene20373:CDS | 35.0% | |
| ATCCATGTTTACAAGGAAGT+GGG | + | chr5.1:4871738-4871757 | MS.gene20373:intron | 35.0% | |
| CAAAGAAGATATCCAAGAAG+AGG | - | chr5.1:4870605-4870624 | None:intergenic | 35.0% | |
| CATTTGTCATCTTTCGTATC+TGG | + | chr5.1:4871273-4871292 | MS.gene20373:CDS | 35.0% | |
| CGATATGAGGATTACATTAG+AGG | + | chr5.1:4871784-4871803 | MS.gene20373:intron | 35.0% | |
| CTCTATGTAGACTCCTATTA+TGG | + | chr5.1:4871559-4871578 | MS.gene20373:intron | 35.0% | |
| GAATTTATTAGCAAGAGCCA+AGG | - | chr5.1:4871488-4871507 | None:intergenic | 35.0% | |
| GACACAAACATGACCATAAT+AGG | - | chr5.1:4871575-4871594 | None:intergenic | 35.0% | |
| GCTCAAAAAACGCTTAAAAG+TGG | - | chr5.1:4871824-4871843 | None:intergenic | 35.0% | |
| GGATATTTGATGTTTGCAGT+TGG | + | chr5.1:4870491-4870510 | MS.gene20373:CDS | 35.0% | |
| GTAAACCACGTAAAAGAATG+TGG | - | chr5.1:4870341-4870360 | None:intergenic | 35.0% | |
| GTCTCTTATCCATGTTTACA+AGG | + | chr5.1:4871731-4871750 | MS.gene20373:intron | 35.0% | |
| TAAAGTTGTACCTGTCTCAA+AGG | - | chr5.1:4871364-4871383 | None:intergenic | 35.0% | |
| TATCCATGTTTACAAGGAAG+TGG | + | chr5.1:4871737-4871756 | MS.gene20373:intron | 35.0% | |
| TCCTATCGATGTAAAAGGAA+TGG | + | chr5.1:4870950-4870969 | MS.gene20373:CDS | 35.0% | |
| ! | ACATCTGATGGACCAAAAAA+TGG | - | chr5.1:4871393-4871412 | None:intergenic | 35.0% |
| ! | ACCATTCCTTTTACATCGAT+AGG | - | chr5.1:4870954-4870973 | None:intergenic | 35.0% |
| !! | AGAACAATTTCCTTTGAGAC+AGG | + | chr5.1:4871351-4871370 | MS.gene20373:CDS | 35.0% |
| !!! | TTAAGCGTTTTTTGAGCCTA+GGG | + | chr5.1:4871827-4871846 | MS.gene20373:intron | 35.0% |
| !!! | TTTAAGCGTTTTTTGAGCCT+AGG | + | chr5.1:4871826-4871845 | MS.gene20373:intron | 35.0% |
| AAGTGAAAAGGACTTCCTTG+AGG | + | chr5.1:4870523-4870542 | MS.gene20373:CDS | 40.0% | |
| AGCTTATGTTGGTCAGTTTG+TGG | + | chr5.1:4870574-4870593 | MS.gene20373:CDS | 40.0% | |
| AGTGTCTGCATGAATGGTAT+AGG | + | chr5.1:4871640-4871659 | MS.gene20373:intron | 40.0% | |
| ATCCCACTTCCTTGTAAACA+TGG | - | chr5.1:4871743-4871762 | None:intergenic | 40.0% | |
| GAACTTGTCACAGCTTATGT+TGG | + | chr5.1:4870563-4870582 | MS.gene20373:CDS | 40.0% | |
| GACAAAAACCGCAGAAATAG+TGG | - | chr5.1:4870892-4870911 | None:intergenic | 40.0% | |
| GATTTGATGTTAAGAGCGAG+TGG | - | chr5.1:4871204-4871223 | None:intergenic | 40.0% | |
| GTGCTTGTTCCTATCACATT+TGG | + | chr5.1:4870993-4871012 | MS.gene20373:CDS | 40.0% | |
| GTTACAAGTGTCTGCATGAA+TGG | + | chr5.1:4871634-4871653 | MS.gene20373:intron | 40.0% | |
| TCTCCGCTTATGTCTTTGAT+GGG | + | chr5.1:4872099-4872118 | MS.gene20373:CDS | 40.0% | |
| TTTGCCTCCACTATCAGTAT+TGG | + | chr5.1:4871155-4871174 | MS.gene20373:CDS | 40.0% | |
| TTTGGTCTACCATCAGCAAT+AGG | + | chr5.1:4870644-4870663 | MS.gene20373:CDS | 40.0% | |
| ! | ACTTCCTTGAGGCATTTAAC+AGG | + | chr5.1:4870534-4870553 | MS.gene20373:CDS | 40.0% |
| ! | AGAGAATGGTCTAGTTGGTA+AGG | + | chr5.1:4871704-4871723 | MS.gene20373:intron | 40.0% |
| ! | TCTTCCCACATTCTTTTACG+TGG | + | chr5.1:4870333-4870352 | MS.gene20373:CDS | 40.0% |
| ! | TTCTTTGAAGATCCCGTTGT+CGG | + | chr5.1:4871505-4871524 | MS.gene20373:CDS | 40.0% |
| !! | ACTGATAGTGGAGGCAAAAA+CGG | - | chr5.1:4871153-4871172 | None:intergenic | 40.0% |
| !! | ATCGCTATCCACTATTTCTG+CGG | + | chr5.1:4870881-4870900 | MS.gene20373:CDS | 40.0% |
| !! | ATGCTTAATGGTGCCATTTG+TGG | - | chr5.1:4870852-4870871 | None:intergenic | 40.0% |
| !!! | AGGATGGTCCCTTTTTTCTT+TGG | + | chr5.1:4870669-4870688 | MS.gene20373:intron | 40.0% |
| !!! | GGTCCCTTTTTTCTTTGGAT+AGG | + | chr5.1:4870674-4870693 | MS.gene20373:intron | 40.0% |
| !!! | TAAGCGTTTTTTGAGCCTAG+GGG | + | chr5.1:4871828-4871847 | MS.gene20373:intron | 40.0% |
| AAACTCCTTTGGTATCCCTC+AGG | + | chr5.1:4870756-4870775 | MS.gene20373:intron | 45.0% | |
| AAGAAAATCGACAGACCTGC+TGG | - | chr5.1:4870363-4870382 | None:intergenic | 45.0% | |
| AATACAATTCCTGCGCCTGA+GGG | - | chr5.1:4870774-4870793 | None:intergenic | 45.0% | |
| AGATACTATGCTCCTGCACT+AGG | + | chr5.1:4870470-4870489 | MS.gene20373:intron | 45.0% | |
| CCAACAGAGAATGGTCTAGT+TGG | + | chr5.1:4871699-4871718 | MS.gene20373:intron | 45.0% | |
| CCAACTAGACCATTCTCTGT+TGG | - | chr5.1:4871702-4871721 | None:intergenic | 45.0% | |
| CTACTTTGCATTCCTGCAGT+TGG | - | chr5.1:4871457-4871476 | None:intergenic | 45.0% | |
| GCTGCAACCAATACTGATAG+TGG | - | chr5.1:4871165-4871184 | None:intergenic | 45.0% | |
| GTCTCCGCTTATGTCTTTGA+TGG | + | chr5.1:4872098-4872117 | MS.gene20373:intron | 45.0% | |
| GTGCTAGCAAGGACTACATA+AGG | - | chr5.1:4870299-4870318 | None:intergenic | 45.0% | |
| TAAGCTGTGACAAGTTCTGC+TGG | - | chr5.1:4870560-4870579 | None:intergenic | 45.0% | |
| TATTAGCAAGAGCCAAGGCA+AGG | - | chr5.1:4871483-4871502 | None:intergenic | 45.0% | |
| TCTACCATCAGCAATAGGTG+AGG | + | chr5.1:4870649-4870668 | MS.gene20373:intron | 45.0% | |
| TGCTGTAGCCTTTCGATATG+AGG | + | chr5.1:4871771-4871790 | MS.gene20373:intron | 45.0% | |
| TTTGTGGTGAAGCCTCTTCT+TGG | + | chr5.1:4870590-4870609 | MS.gene20373:CDS | 45.0% | |
| ! | CTTTTACGTGGTTTACCAGC+AGG | + | chr5.1:4870345-4870364 | MS.gene20373:CDS | 45.0% |
| !! | GCAACCAATACTGATAGTGG+AGG | - | chr5.1:4871162-4871181 | None:intergenic | 45.0% |
| !! | GTATTGCTGGCTTGTGTTAG+TGG | + | chr5.1:4870789-4870808 | MS.gene20373:CDS | 45.0% |
| AGGCGCAGGAATTGTATTGC+TGG | + | chr5.1:4870776-4870795 | MS.gene20373:intron | 50.0% | |
| CAATACAATTCCTGCGCCTG+AGG | - | chr5.1:4870775-4870794 | None:intergenic | 50.0% | |
| CCATCAGCAATAGGTGAGGA+TGG | + | chr5.1:4870653-4870672 | MS.gene20373:intron | 50.0% | |
| CCATCCTCACCTATTGCTGA+TGG | - | chr5.1:4870656-4870675 | None:intergenic | 50.0% | |
| CTCTGTAGTGGCTTCACATC+AGG | - | chr5.1:4871333-4871352 | None:intergenic | 50.0% | |
| CTGGCCTGTTAAATGCCTCA+AGG | - | chr5.1:4870541-4870560 | None:intergenic | 50.0% | |
| GAGGCTCACTATCAGGATCA+GGG | - | chr5.1:4871858-4871877 | None:intergenic | 50.0% | |
| GCTTCACATCAGGTGAGTCA+CGG | - | chr5.1:4871323-4871342 | None:intergenic | 50.0% | |
| TGTAGTCCTTGCTAGCACAC+TGG | + | chr5.1:4870301-4870320 | MS.gene20373:CDS | 50.0% | |
| ! | TGCAGAAGGCATACCGACAA+CGG | - | chr5.1:4871521-4871540 | None:intergenic | 50.0% |
| !! | TTGAGCTGAGTTGATCCCAG+AGG | - | chr5.1:4871890-4871909 | None:intergenic | 50.0% |
| GCAAAGTAGCCTCCTTGCCT+TGG | + | chr5.1:4871468-4871487 | MS.gene20373:CDS | 55.0% | |
| GGAGGCTCACTATCAGGATC+AGG | - | chr5.1:4871859-4871878 | None:intergenic | 55.0% | |
| TAGCAAGAGCCAAGGCAAGG+AGG | - | chr5.1:4871480-4871499 | None:intergenic | 55.0% | |
| TTGGTTGCAGCTCTCTCTGC+AGG | + | chr5.1:4871174-4871193 | MS.gene20373:CDS | 55.0% | |
| ! | GCAGAAGGCATACCGACAAC+GGG | - | chr5.1:4871520-4871539 | None:intergenic | 55.0% |
| AGAGGCGGAGGCTCACTATC+AGG | - | chr5.1:4871865-4871884 | None:intergenic | 60.0% | |
| CAGGATCAGGGAGAACCCCT+AGG | - | chr5.1:4871846-4871865 | None:intergenic | 60.0% | |
| CTGCGCCTGAGGGATACCAA+AGG | - | chr5.1:4870764-4870783 | None:intergenic | 60.0% | |
| CTTTGGTATCCCTCAGGCGC+AGG | + | chr5.1:4870762-4870781 | MS.gene20373:intron | 60.0% | |
| GCGCTACCAGTGTGCTAGCA+AGG | - | chr5.1:4870310-4870329 | None:intergenic | 60.0% | |
| TTGATCCCAGAGGCCAGAGG+CGG | - | chr5.1:4871880-4871899 | None:intergenic | 60.0% | |
| ! | GAGTTGATCCCAGAGGCCAG+AGG | - | chr5.1:4871883-4871902 | None:intergenic | 60.0% |
| ! | TGATAGTGAGCCTCCGCCTC+TGG | + | chr5.1:4871864-4871883 | MS.gene20373:intron | 60.0% |
| AGCCTCCGCCTCTGGCCTCT+GGG | + | chr5.1:4871872-4871891 | MS.gene20373:intron | 70.0% | |
| ATCCCAGAGGCCAGAGGCGG+AGG | - | chr5.1:4871877-4871896 | None:intergenic | 70.0% | |
| GAGCCTCCGCCTCTGGCCTC+TGG | + | chr5.1:4871871-4871890 | MS.gene20373:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 4870239 | 4872179 | 4870239 | ID=MS.gene20373 |
| chr5.1 | mRNA | 4870239 | 4872179 | 4870239 | ID=MS.gene20373.t1;Parent=MS.gene20373 |
| chr5.1 | exon | 4870239 | 4870366 | 4870239 | ID=MS.gene20373.t1.exon1;Parent=MS.gene20373.t1 |
| chr5.1 | CDS | 4870239 | 4870366 | 4870239 | ID=cds.MS.gene20373.t1;Parent=MS.gene20373.t1 |
| chr5.1 | exon | 4870472 | 4870665 | 4870472 | ID=MS.gene20373.t1.exon2;Parent=MS.gene20373.t1 |
| chr5.1 | CDS | 4870472 | 4870665 | 4870472 | ID=cds.MS.gene20373.t1;Parent=MS.gene20373.t1 |
| chr5.1 | exon | 4870778 | 4871030 | 4870778 | ID=MS.gene20373.t1.exon3;Parent=MS.gene20373.t1 |
| chr5.1 | CDS | 4870778 | 4871030 | 4870778 | ID=cds.MS.gene20373.t1;Parent=MS.gene20373.t1 |
| chr5.1 | exon | 4871119 | 4871372 | 4871119 | ID=MS.gene20373.t1.exon4;Parent=MS.gene20373.t1 |
| chr5.1 | CDS | 4871119 | 4871372 | 4871119 | ID=cds.MS.gene20373.t1;Parent=MS.gene20373.t1 |
| chr5.1 | exon | 4871464 | 4871546 | 4871464 | ID=MS.gene20373.t1.exon5;Parent=MS.gene20373.t1 |
| chr5.1 | CDS | 4871464 | 4871546 | 4871464 | ID=cds.MS.gene20373.t1;Parent=MS.gene20373.t1 |
| chr5.1 | exon | 4872099 | 4872179 | 4872099 | ID=MS.gene20373.t1.exon6;Parent=MS.gene20373.t1 |
| chr5.1 | CDS | 4872099 | 4872179 | 4872099 | ID=cds.MS.gene20373.t1;Parent=MS.gene20373.t1 |
| Gene Sequence |
| Protein sequence |
