AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20763

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20763.t1 MTR_1g088110 79.897 582 47 2 1 512 1 582 0.0 856
MS.gene20763.t1 MTR_1g087935 61.893 412 155 2 101 510 28 439 1.25e-156 453
MS.gene20763.t1 MTR_1g088130 32.450 151 56 3 363 512 30 135 4.10e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20763.t1 AT2G47540 51.064 141 61 3 380 512 33 173 2.55e-40 144
MS.gene20763.t1 AT4G02270 48.361 122 62 1 384 504 40 161 1.16e-31 120
MS.gene20763.t1 AT2G47530 40.645 155 74 5 369 509 32 182 2.16e-24 100
MS.gene20763.t1 AT1G54970 35.433 127 75 2 383 509 211 330 1.19e-19 90.5
MS.gene20763.t1 AT3G62680 38.525 122 67 4 385 503 187 303 6.58e-18 85.1

Find 111 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATACTCATAATCTATTT+TGG 0.075431 1.2:-65909699 None:intergenic
TGCATAGCCATAATCTATTT+TGG 0.104033 1.2:-65909279 None:intergenic
CCCAAATCCAAAACTGATTA+TGG 0.125943 1.2:+65909587 MS.gene20763:CDS
GGCATACTCATAATCTGTTT+TGG 0.183549 1.2:-65909489 None:intergenic
GACTTTGGTTTCTCAATCTT+GGG 0.198613 1.2:-65909413 None:intergenic
GACTTTGGTTTCTCGATCTT+GGG 0.215411 1.2:-65909518 None:intergenic
GACTTTGGTTTCTCGATCTT+GGG 0.215411 1.2:-65909728 None:intergenic
GCAGGGGCATATTCATAATT+TGG 0.217355 1.2:-65909389 None:intergenic
CTTCTTATCTACTTCAGTTT+GGG 0.220960 1.2:-65908907 None:intergenic
AGACTTTGGTTTCTCGATCT+TGG 0.227468 1.2:-65909519 None:intergenic
AGACTTTGGTTTCTCGATCT+TGG 0.227468 1.2:-65909729 None:intergenic
GGACTTTGGTTTCTCAATCT+TGG 0.229209 1.2:-65909414 None:intergenic
TTCATAATTTGGTTTAGATT+TGG 0.231424 1.2:-65909378 None:intergenic
TTCATAATCTATATCGAGTT+TGG 0.251385 1.2:-65909012 None:intergenic
TTTATAATCTGTATCAAGTT+TGG 0.255242 1.2:-65909843 None:intergenic
AGGTGTTTGTAATATGTTTC+GGG 0.258454 1.2:-65909122 None:intergenic
GGACTTGGGTTTCTCAATCT+TGG 0.263680 1.2:-65909309 None:intergenic
GGAATAATCATAATTTGATT+TGG 0.268799 1.2:-65909798 None:intergenic
TTGTAATATGTTTCGGGTTC+AGG 0.269044 1.2:-65909116 None:intergenic
ACTTCTTATCTACTTCAGTT+TGG 0.271626 1.2:-65908908 None:intergenic
ACATGTCTCAATCCTGTTAT+AGG 0.275172 1.2:-65910243 None:intergenic
TCATAATTTGGTTTAGATTT+GGG 0.280504 1.2:-65909377 None:intergenic
TCTATAATTTACTTTGGGTT+TGG 0.285320 1.2:-65909066 None:intergenic
CCCAAACCCAAAATAGATTA+TGG 0.290684 1.2:+65909272 MS.gene20763:CDS
GGCATACCCATAATCAGTTT+TGG 0.293211 1.2:-65909594 None:intergenic
ACTATACTCATAATTTGTTT+TGG 0.297520 1.2:-65908967 None:intergenic
GGTTTGGGAACTTTATAGTT+TGG 0.300710 1.2:-65909050 None:intergenic
GAATAATCATAATTTGATTT+GGG 0.301569 1.2:-65909797 None:intergenic
CTATAATTTACTTTGGGTTT+GGG 0.305045 1.2:-65909065 None:intergenic
GACTTAGGCTTCTCAACCTT+TGG 0.305671 1.2:-65909203 None:intergenic
AAGGATAGAGATAGCGAAAA+TGG 0.312365 1.2:-65908808 None:intergenic
GACTTGGGTTTCTCAATCTT+GGG 0.329949 1.2:-65909308 None:intergenic
GGTTTGGAAACTTCATAGTT+TGG 0.330240 1.2:-65909677 None:intergenic
GGTTCAGACTTCTCAGTGTT+TGG 0.348682 1.2:-65908885 None:intergenic
ATCATATCTATAATTTACTT+TGG 0.350883 1.2:-65909072 None:intergenic
GACTTCTCAGTGTTTGGTGC+TGG 0.357722 1.2:-65908879 None:intergenic
GGTTGGGGAACTTCATAGTC+TGG 0.370057 1.2:-65909152 None:intergenic
TCATATCTATAATTTACTTT+GGG 0.385548 1.2:-65909071 None:intergenic
GGGAACTTCATAGTCTGGTT+TGG 0.390620 1.2:-65909147 None:intergenic
GGTTTGGGAACTTCATAGTC+TGG 0.391563 1.2:-65909257 None:intergenic
GGTTTGGGAACTTCATAGTC+TGG 0.391563 1.2:-65909467 None:intergenic
TTATAATCTGTATCAAGTTT+GGG 0.394940 1.2:-65909842 None:intergenic
GATTTGGGAATTTCATAGTC+TGG 0.395558 1.2:-65909782 None:intergenic
CCCACAATCATTAGTGTTCA+AGG 0.397118 1.2:+65909929 MS.gene20763:CDS
GGCTTCTCAACCTTTGGAGT+TGG 0.398580 1.2:-65909197 None:intergenic
GGATATGTTTAATAACCATT+AGG 0.402126 1.2:-65910504 None:intergenic
GAGGTGTTTGTAATATGTTT+CGG 0.407116 1.2:-65909123 None:intergenic
AGTTTGGATTTCTCAACCTC+TGG 0.412283 1.2:-65908996 None:intergenic
GGAACTTTACATGTCTCTAA+TGG 0.414014 1.2:-65910363 None:intergenic
GATTTCTCAACCTCTGGAGT+TGG 0.415316 1.2:-65908990 None:intergenic
GTTTGATGAGTAAACTTCTT+CGG 0.415435 1.2:-65909225 None:intergenic
TGTGTAAACAGCTTCGGACT+TGG 0.416511 1.2:-65909324 None:intergenic
TCTAATTATTATCCAATTCA+AGG 0.416895 1.2:+65909974 MS.gene20763:CDS
CCAAATCCAAAACTGATTAT+GGG 0.417568 1.2:+65909588 MS.gene20763:CDS
GATAGTAAAGGTTATTACTA+TGG 0.419539 1.2:+65910270 MS.gene20763:CDS
ATAACCATTAGGAACTGGTT+TGG 0.422058 1.2:-65910493 None:intergenic
TATGAGACAGGTCCTATAAC+AGG 0.429310 1.2:+65910231 MS.gene20763:CDS
GTTTAATAACCATTAGGAAC+TGG 0.429812 1.2:-65910498 None:intergenic
GATTTGGGAACTTTATAGTC+AGG 0.446675 1.2:-65909572 None:intergenic
TCCGCAACTGATTATGTGTA+TGG 0.452263 1.2:+65908855 MS.gene20763:CDS
GGTTCAGGTCTCTCTATCTC+TGG 0.453423 1.2:-65909101 None:intergenic
CACACCAAACCCCACAAAAC+CGG 0.453903 1.2:+65909343 MS.gene20763:CDS
GATTTGGGAACTTCATAGTC+CGG 0.458314 1.2:-65909362 None:intergenic
ACATTGTCACTTGCAGAGTT+GGG 0.460360 1.2:+65910294 MS.gene20763:CDS
GTGTAAACTGCTTCAGACTT+TGG 0.463749 1.2:-65909743 None:intergenic
GTGTAAATTGCTTCGGACTT+TGG 0.466310 1.2:-65909428 None:intergenic
ATAATCAGTTGCGGAGGCTA+TGG 0.472736 1.2:-65908847 None:intergenic
GGTTTCTCAATCTTGGGAGC+CGG 0.476195 1.2:-65909302 None:intergenic
GTTTGGTGTGTAAACAGCTT+CGG 0.477233 1.2:-65909330 None:intergenic
TGTGTAGACTGCTTCAGACT+TGG 0.477861 1.2:-65909639 None:intergenic
TACATTGTCACTTGCAGAGT+TGG 0.481374 1.2:+65910293 MS.gene20763:CDS
CAAGCCAAACCAGTTCCTAA+TGG 0.482016 1.2:+65910489 MS.gene20763:CDS
GTTTGGTGTGTAAATTGCTT+CGG 0.485922 1.2:-65909435 None:intergenic
GGTCTCTCTATCTCTGGAAC+GGG 0.487992 1.2:-65909095 None:intergenic
GTGTAAACAGCTTCGGACTT+GGG 0.496746 1.2:-65909323 None:intergenic
GAGTAAACTTCTTCGGACTT+AGG 0.505884 1.2:-65909218 None:intergenic
AGGTGCAATAGAGTACAATC+TGG 0.512544 1.2:-65910451 None:intergenic
ACTTTGGTTTCTCAATCTTG+GGG 0.512628 1.2:-65909412 None:intergenic
GTGTAAACTACTTCAGACTT+TGG 0.515414 1.2:-65909533 None:intergenic
ACTTTGGTTTCTCGATCTTG+GGG 0.515715 1.2:-65909517 None:intergenic
ACTTTGGTTTCTCGATCTTG+GGG 0.515715 1.2:-65909727 None:intergenic
CCCCAACCTAAAATAGACTA+CGG 0.519581 1.2:+65909167 MS.gene20763:CDS
GCTTGCGAGGTGTAGAAGAA+AGG 0.521342 1.2:-65910471 None:intergenic
CCTTGAACACTAATGATTGT+GGG 0.526216 1.2:-65909929 None:intergenic
AGGTCTCTCTATCTCTGGAA+CGG 0.533585 1.2:-65909096 None:intergenic
TCCTTGAACACTAATGATTG+TGG 0.534039 1.2:-65909930 None:intergenic
TGTGAATGTGTGAATGAGCT+TGG 0.538836 1.2:+65910207 MS.gene20763:CDS
TCTCTAATGGAGAACTCTCT+AGG 0.548355 1.2:-65910350 None:intergenic
TTCTTATCTACTTCAGTTTG+GGG 0.552438 1.2:-65908906 None:intergenic
AGGAGACGGTACGAAGAAAG+AGG 0.555521 1.2:-65910417 None:intergenic
AGGAACTGGTTTGGCTTGCG+AGG 0.559011 1.2:-65910484 None:intergenic
TTCACATGTAACTCGTGCTA+CGG 0.561259 1.2:-65910190 None:intergenic
AATCATTAGTGTTCAAGGAG+TGG 0.567276 1.2:+65909934 MS.gene20763:CDS
GAGGAGCACCACTGATGCCA+TGG 0.576264 1.2:-65910398 None:intergenic
CTTCATAGTCTGGTTTGGTG+AGG 0.576955 1.2:-65909142 None:intergenic
CCCAACCTAAAATAGACTAC+GGG 0.578260 1.2:+65909168 MS.gene20763:CDS
ATGCCATGGTTCACATCGGT+GGG 0.585493 1.2:-65910384 None:intergenic
CTTTGGTTTCTCGATCTTGG+GGG 0.585548 1.2:-65909516 None:intergenic
CTTTGGTTTCTCGATCTTGG+GGG 0.585548 1.2:-65909726 None:intergenic
AATGAGCTTGGATATGAGAC+AGG 0.588969 1.2:+65910219 MS.gene20763:CDS
AGACATGTAACAGATAGTAA+AGG 0.593269 1.2:+65910258 MS.gene20763:CDS
CGGGTATAGTCCAACTCCAA+AGG 0.611610 1.2:+65909187 MS.gene20763:CDS
CTTTGGTTTCTCAATCTTGG+GGG 0.618265 1.2:-65909411 None:intergenic
AATAGATTATGGCTATGCAC+CGG 0.625707 1.2:+65909283 MS.gene20763:CDS
GATGCCATGGTTCACATCGG+TGG 0.630598 1.2:-65910385 None:intergenic
GTTCCCACCGATGTGAACCA+TGG 0.654623 1.2:+65910381 MS.gene20763:CDS
ACCATACACATAATCAGTTG+CGG 0.654626 1.2:-65908856 None:intergenic
TGAGTATAGTCCAACTCCAG+AGG 0.667102 1.2:+65908980 MS.gene20763:CDS
GATGTGAACCATGGCATCAG+TGG 0.673868 1.2:+65910390 MS.gene20763:CDS
ACTGATGCCATGGTTCACAT+CGG 0.694443 1.2:-65910388 None:intergenic
ATACACATAATCAGTTGCGG+AGG 0.697746 1.2:-65908853 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATATCTATAATTTACTT+TGG - chr1.2:65909075-65909094 None:intergenic 15.0%
!! TCATATCTATAATTTACTTT+GGG - chr1.2:65909074-65909093 None:intergenic 15.0%
!!! GAATAATCATAATTTGATTT+GGG - chr1.2:65909800-65909819 None:intergenic 15.0%
!! GGAATAATCATAATTTGATT+TGG - chr1.2:65909801-65909820 None:intergenic 20.0%
!! TCTAATTATTATCCAATTCA+AGG + chr1.2:65909974-65909993 MS.gene20763:CDS 20.0%
!! TTATAATCTGTATCAAGTTT+GGG - chr1.2:65909845-65909864 None:intergenic 20.0%
!! TTTATAATCTGTATCAAGTT+TGG - chr1.2:65909846-65909865 None:intergenic 20.0%
!!! ACTATACTCATAATTTGTTT+TGG - chr1.2:65908970-65908989 None:intergenic 20.0%
!!! GTAAAAAAAGTATTATAGCT+AGG - chr1.2:65910052-65910071 None:intergenic 20.0%
!!! TCATAATTTGGTTTAGATTT+GGG - chr1.2:65909380-65909399 None:intergenic 20.0%
!!! TTCATAATTTGGTTTAGATT+TGG - chr1.2:65909381-65909400 None:intergenic 20.0%
! CCTAACTAACATAAACTAAT+TGG - chr1.2:65910110-65910129 None:intergenic 25.0%
! GATAGTAAAGGTTATTACTA+TGG + chr1.2:65910270-65910289 MS.gene20763:CDS 25.0%
! TTCATAATCTATATCGAGTT+TGG - chr1.2:65909015-65909034 None:intergenic 25.0%
!! CCAATTAGTTTATGTTAGTT+AGG + chr1.2:65910107-65910126 MS.gene20763:intron 25.0%
!! CTATAATTTACTTTGGGTTT+GGG - chr1.2:65909068-65909087 None:intergenic 25.0%
!! GCATACTCATAATCTATTTT+GGG - chr1.2:65909701-65909720 None:intergenic 25.0%
!! TCTATAATTTACTTTGGGTT+TGG - chr1.2:65909069-65909088 None:intergenic 25.0%
!! TGCATACTCATAATCTATTT+TGG - chr1.2:65909702-65909721 None:intergenic 25.0%
!! TTTTCGCTTATATGATAGAA+AGG + chr1.2:65910001-65910020 MS.gene20763:intron 25.0%
!!! CTCATAATTTGTTTTGGATT+TGG - chr1.2:65908964-65908983 None:intergenic 25.0%
ACTTCTTATCTACTTCAGTT+TGG - chr1.2:65908911-65908930 None:intergenic 30.0%
AGACATGTAACAGATAGTAA+AGG + chr1.2:65910258-65910277 MS.gene20763:CDS 30.0%
AGCGAAAAATTACCTTGAAT+TGG - chr1.2:65909989-65910008 None:intergenic 30.0%
AGGTGTTTGTAATATGTTTC+GGG - chr1.2:65909125-65909144 None:intergenic 30.0%
CCAAATCCAAAACTGATTAT+GGG + chr1.2:65909588-65909607 MS.gene20763:CDS 30.0%
CTTCTTATCTACTTCAGTTT+GGG - chr1.2:65908910-65908929 None:intergenic 30.0%
GTTTGATGAGTAAACTTCTT+CGG - chr1.2:65909228-65909247 None:intergenic 30.0%
TTCTTATCTACTTCAGTTTG+GGG - chr1.2:65908909-65908928 None:intergenic 30.0%
! AACTTTATAGTCAGGTTTTG+TGG - chr1.2:65909567-65909586 None:intergenic 30.0%
! GAGGTGTTTGTAATATGTTT+CGG - chr1.2:65909126-65909145 None:intergenic 30.0%
! GCATACTCATAATCTGTTTT+GGG - chr1.2:65909491-65909510 None:intergenic 30.0%
! GCATAGCCATAATCTATTTT+GGG - chr1.2:65909281-65909300 None:intergenic 30.0%
! TGCATAGCCATAATCTATTT+TGG - chr1.2:65909282-65909301 None:intergenic 30.0%
!! ACAATCTGGAATTGTTTTCA+AGG - chr1.2:65910440-65910459 None:intergenic 30.0%
!! ACTTGGATTTTTCGATTTTG+GGG - chr1.2:65909625-65909644 None:intergenic 30.0%
!! ACTTTATAGTCAGGTTTTGT+GGG - chr1.2:65909566-65909585 None:intergenic 30.0%
!! AGACTTGGATTTTTCGATTT+TGG - chr1.2:65909627-65909646 None:intergenic 30.0%
!! GACTTGGATTTTTCGATTTT+GGG - chr1.2:65909626-65909645 None:intergenic 30.0%
!!! AACTTCATAATCTGGTTTTG+TGG - chr1.2:65909876-65909895 None:intergenic 30.0%
!!! AACTTCATAGTTTGGTTTTG+TGG - chr1.2:65909672-65909691 None:intergenic 30.0%
!!! AATTTCATAGTCTGGTTTTG+TGG - chr1.2:65909777-65909796 None:intergenic 30.0%
!!! ACTTCATAATCTGGTTTTGT+GGG - chr1.2:65909875-65909894 None:intergenic 30.0%
!!! ACTTCATAGTTTGGTTTTGT+GGG - chr1.2:65909671-65909690 None:intergenic 30.0%
!!! CCATAATCAGTTTTGGATTT+GGG - chr1.2:65909590-65909609 None:intergenic 30.0%
!!! CCATAATCTATTTTGGGTTT+GGG - chr1.2:65909275-65909294 None:intergenic 30.0%
!!! CTCATAATCTATTTTGGGTT+TGG - chr1.2:65909696-65909715 None:intergenic 30.0%
!!! TCATAATCTGTTTTGGGTTT+GGG - chr1.2:65909485-65909504 None:intergenic 30.0%
!!! TCGTAGTTTTCTTTTGGTTT+TGG - chr1.2:65909899-65909918 None:intergenic 30.0%
AAGGATAGAGATAGCGAAAA+TGG - chr1.2:65908811-65908830 None:intergenic 35.0%
AATAGATTATGGCTATGCAC+CGG + chr1.2:65909283-65909302 MS.gene20763:CDS 35.0%
AATCATTAGTGTTCAAGGAG+TGG + chr1.2:65909934-65909953 MS.gene20763:CDS 35.0%
ACATGTCTCAATCCTGTTAT+AGG - chr1.2:65910246-65910265 None:intergenic 35.0%
ACCATACACATAATCAGTTG+CGG - chr1.2:65908859-65908878 None:intergenic 35.0%
ATAACCATTAGGAACTGGTT+TGG - chr1.2:65910496-65910515 None:intergenic 35.0%
CCCAAACCCAAAATAGATTA+TGG + chr1.2:65909272-65909291 MS.gene20763:CDS 35.0%
CCCAAATCCAAAACTGATTA+TGG + chr1.2:65909587-65909606 MS.gene20763:CDS 35.0%
CCTTGAACACTAATGATTGT+GGG - chr1.2:65909932-65909951 None:intergenic 35.0%
GATTTGGGAACTTTATAGTC+AGG - chr1.2:65909575-65909594 None:intergenic 35.0%
GATTTGGGAATTTCATAGTC+TGG - chr1.2:65909785-65909804 None:intergenic 35.0%
GGAACTTTACATGTCTCTAA+TGG - chr1.2:65910366-65910385 None:intergenic 35.0%
GGTTTGGAAACTTCATAGTT+TGG - chr1.2:65909680-65909699 None:intergenic 35.0%
GGTTTGGGAACTTTATAGTT+TGG - chr1.2:65909053-65909072 None:intergenic 35.0%
GTGTAAACTACTTCAGACTT+TGG - chr1.2:65909536-65909555 None:intergenic 35.0%
TATCATGTGTGAGAAATGCA+GGG + chr1.2:65910166-65910185 MS.gene20763:intron 35.0%
TCCTTGAACACTAATGATTG+TGG - chr1.2:65909933-65909952 None:intergenic 35.0%
TTATCATGTGTGAGAAATGC+AGG + chr1.2:65910165-65910184 MS.gene20763:intron 35.0%
! ACTTTGGTTTCTCAATCTTG+GGG - chr1.2:65909415-65909434 None:intergenic 35.0%
! CTATACCCGTAGTCTATTTT+AGG - chr1.2:65909176-65909195 None:intergenic 35.0%
! GACTTTGGTTTCTCAATCTT+GGG - chr1.2:65909416-65909435 None:intergenic 35.0%
! GGCATACTCATAATCTGTTT+TGG - chr1.2:65909492-65909511 None:intergenic 35.0%
! TGCACTTCGTAGTTTTCTTT+TGG - chr1.2:65909905-65909924 None:intergenic 35.0%
!! AGTTTGGGTTTCTCGATTTT+TGG - chr1.2:65909830-65909849 None:intergenic 35.0%
!! CTTGGATTTTTCGATTTTGG+GGG - chr1.2:65909624-65909643 None:intergenic 35.0%
!! CTTTATAGTCAGGTTTTGTG+GGG - chr1.2:65909565-65909584 None:intergenic 35.0%
!! GTTTGGTGTGTAAATTGCTT+CGG - chr1.2:65909438-65909457 None:intergenic 35.0%
!! TGGAATTGTTTTCAAGGAGA+CGG - chr1.2:65910434-65910453 None:intergenic 35.0%
!! TTGTAATATGTTTCGGGTTC+AGG - chr1.2:65909119-65909138 None:intergenic 35.0%
!!! AACTTCATAGTCTGGTTTTG+TGG - chr1.2:65909252-65909271 None:intergenic 35.0%
!!! ACTTCATAGTCTGGTTTTGT+GGG - chr1.2:65909251-65909270 None:intergenic 35.0%
!!! CCCATAATCAGTTTTGGATT+TGG - chr1.2:65909591-65909610 None:intergenic 35.0%
!!! CTCATAATCTGTTTTGGGTT+TGG - chr1.2:65909486-65909505 None:intergenic 35.0%
!!! CTTCATAATCTGGTTTTGTG+GGG - chr1.2:65909874-65909893 None:intergenic 35.0%
!!! CTTCATAGTTTGGTTTTGTG+GGG - chr1.2:65909670-65909689 None:intergenic 35.0%
!!! GCCATAATCTATTTTGGGTT+TGG - chr1.2:65909276-65909295 None:intergenic 35.0%
!!! GGTTTTGGAACTTCATAATC+TGG - chr1.2:65909884-65909903 None:intergenic 35.0%
!!! GTTTCTCGATTTTTGGTGTT+GGG - chr1.2:65909823-65909842 None:intergenic 35.0%
!!! TAGTCTGGTTTTGTGGATTT+TGG - chr1.2:65909770-65909789 None:intergenic 35.0%
!!! TTTCTCGATTTTTGGTGTTG+GGG - chr1.2:65909822-65909841 None:intergenic 35.0%
AATGAGCTTGGATATGAGAC+AGG + chr1.2:65910219-65910238 MS.gene20763:CDS 40.0%
AGGTGCAATAGAGTACAATC+TGG - chr1.2:65910454-65910473 None:intergenic 40.0%
AGTTTGGATTTCTCAACCTC+TGG - chr1.2:65908999-65909018 None:intergenic 40.0%
ATACACATAATCAGTTGCGG+AGG - chr1.2:65908856-65908875 None:intergenic 40.0%
ATCATGTGTGAGAAATGCAG+GGG + chr1.2:65910167-65910186 MS.gene20763:intron 40.0%
CCCAACCTAAAATAGACTAC+GGG + chr1.2:65909168-65909187 MS.gene20763:CDS 40.0%
CCCACAATCATTAGTGTTCA+AGG + chr1.2:65909929-65909948 MS.gene20763:CDS 40.0%
CCCCAACCTAAAATAGACTA+CGG + chr1.2:65909167-65909186 MS.gene20763:CDS 40.0%
GACTTGGGTTTCTCAATCTT+GGG - chr1.2:65909311-65909330 None:intergenic 40.0%
GAGTAAACTTCTTCGGACTT+AGG - chr1.2:65909221-65909240 None:intergenic 40.0%
GATTTGGGAACTTCATAGTC+CGG - chr1.2:65909365-65909384 None:intergenic 40.0%
GTGTAAACTGCTTCAGACTT+TGG - chr1.2:65909746-65909765 None:intergenic 40.0%
GTGTAAATTGCTTCGGACTT+TGG - chr1.2:65909431-65909450 None:intergenic 40.0%
TATGAGACAGGTCCTATAAC+AGG + chr1.2:65910231-65910250 MS.gene20763:CDS 40.0%
TCCGCAACTGATTATGTGTA+TGG + chr1.2:65908855-65908874 MS.gene20763:CDS 40.0%
TCTCTAATGGAGAACTCTCT+AGG - chr1.2:65910353-65910372 None:intergenic 40.0%
TGTGAATGTGTGAATGAGCT+TGG + chr1.2:65910207-65910226 MS.gene20763:CDS 40.0%
TTCACATGTAACTCGTGCTA+CGG - chr1.2:65910193-65910212 None:intergenic 40.0%
! AACTTCATAGTCCGGTTTTG+TGG - chr1.2:65909357-65909376 None:intergenic 40.0%
! ACATTGTCACTTGCAGAGTT+GGG + chr1.2:65910294-65910313 MS.gene20763:CDS 40.0%
! ACTTTGGTTTCTCGATCTTG+GGG - chr1.2:65909520-65909539 None:intergenic 40.0%
! AGACTTTGGTTTCTCGATCT+TGG - chr1.2:65909522-65909541 None:intergenic 40.0%
! CTTTGGTTTCTCAATCTTGG+GGG - chr1.2:65909414-65909433 None:intergenic 40.0%
! GACTTTGGTTTCTCGATCTT+GGG - chr1.2:65909521-65909540 None:intergenic 40.0%
! GCAGGGGCATATTCATAATT+TGG - chr1.2:65909392-65909411 None:intergenic 40.0%
! GGACTTTGGTTTCTCAATCT+TGG - chr1.2:65909417-65909436 None:intergenic 40.0%
! GGCATACCCATAATCAGTTT+TGG - chr1.2:65909597-65909616 None:intergenic 40.0%
! TACATTGTCACTTGCAGAGT+TGG + chr1.2:65910293-65910312 MS.gene20763:CDS 40.0%
!! ACCCGTAGTCTATTTTAGGT+TGG - chr1.2:65909172-65909191 None:intergenic 40.0%
!! ACTTCATAGTCCGGTTTTGT+GGG - chr1.2:65909356-65909375 None:intergenic 40.0%
!! ATTTTTCGATTTTGGGGGTC+GGG - chr1.2:65909619-65909638 None:intergenic 40.0%
!! GATTTTTCGATTTTGGGGGT+CGG - chr1.2:65909620-65909639 None:intergenic 40.0%
!! GTTTGGTGTGTAAACAGCTT+CGG - chr1.2:65909333-65909352 None:intergenic 40.0%
!!! CCCGTAGTCTATTTTAGGTT+GGG - chr1.2:65909171-65909190 None:intergenic 40.0%
!!! CCGTAGTCTATTTTAGGTTG+GGG - chr1.2:65909170-65909189 None:intergenic 40.0%
!!! CTTCATAGTCTGGTTTTGTG+GGG - chr1.2:65909250-65909269 None:intergenic 40.0%
!!! GGAGTGGTTTTGTGTAAATC+TGG + chr1.2:65909950-65909969 MS.gene20763:CDS 40.0%
!!! GGTTTCTCGATTTTTGGTGT+TGG - chr1.2:65909824-65909843 None:intergenic 40.0%
!!! TAGTTTGGTTTTGTGGGGTT+TGG - chr1.2:65909665-65909684 None:intergenic 40.0%
ACTGATGCCATGGTTCACAT+CGG - chr1.2:65910391-65910410 None:intergenic 45.0%
ATAATCAGTTGCGGAGGCTA+TGG - chr1.2:65908850-65908869 None:intergenic 45.0%
CAAGCCAAACCAGTTCCTAA+TGG + chr1.2:65910489-65910508 MS.gene20763:CDS 45.0%
GACTTAGGCTTCTCAACCTT+TGG - chr1.2:65909206-65909225 None:intergenic 45.0%
GGACTTGGGTTTCTCAATCT+TGG - chr1.2:65909312-65909331 None:intergenic 45.0%
GGGAACTTCATAGTCTGGTT+TGG - chr1.2:65909150-65909169 None:intergenic 45.0%
GGTTCAGACTTCTCAGTGTT+TGG - chr1.2:65908888-65908907 None:intergenic 45.0%
GGTTTGGGAACTTCATAGTC+TGG - chr1.2:65909260-65909279 None:intergenic 45.0%
GTGTAAACAGCTTCGGACTT+GGG - chr1.2:65909326-65909345 None:intergenic 45.0%
TGAGTATAGTCCAACTCCAG+AGG + chr1.2:65908980-65908999 MS.gene20763:CDS 45.0%
TGGCTAGCAACGCAAAAAGA+AGG - chr1.2:65908830-65908849 None:intergenic 45.0%
TGTGTAAACAGCTTCGGACT+TGG - chr1.2:65909327-65909346 None:intergenic 45.0%
TGTGTAGACTGCTTCAGACT+TGG - chr1.2:65909642-65909661 None:intergenic 45.0%
! AGGTCTCTCTATCTCTGGAA+CGG - chr1.2:65909099-65909118 None:intergenic 45.0%
! CTTTGGTTTCTCGATCTTGG+GGG - chr1.2:65909519-65909538 None:intergenic 45.0%
!! CTTCATAGTCCGGTTTTGTG+GGG - chr1.2:65909355-65909374 None:intergenic 45.0%
!! CTTCATAGTCTGGTTTGGTG+AGG - chr1.2:65909145-65909164 None:intergenic 45.0%
!! GATTTCTCAACCTCTGGAGT+TGG - chr1.2:65908993-65909012 None:intergenic 45.0%
!! TTTTTCGATTTTGGGGGTCG+GGG - chr1.2:65909618-65909637 None:intergenic 45.0%
!!! TAGTCTGGTTTTGTGGGGTT+TGG - chr1.2:65909245-65909264 None:intergenic 45.0%
AGGAGACGGTACGAAGAAAG+AGG - chr1.2:65910420-65910439 None:intergenic 50.0%
ATGCCATGGTTCACATCGGT+GGG - chr1.2:65910387-65910406 None:intergenic 50.0%
CACACCAAACCCCACAAAAC+CGG + chr1.2:65909343-65909362 MS.gene20763:CDS 50.0%
CGGGTATAGTCCAACTCCAA+AGG + chr1.2:65909187-65909206 MS.gene20763:CDS 50.0%
GATGTGAACCATGGCATCAG+TGG + chr1.2:65910390-65910409 MS.gene20763:CDS 50.0%
GCTTGCGAGGTGTAGAAGAA+AGG - chr1.2:65910474-65910493 None:intergenic 50.0%
GGTTCAGGTCTCTCTATCTC+TGG - chr1.2:65909104-65909123 None:intergenic 50.0%
GGTTGGGGAACTTCATAGTC+TGG - chr1.2:65909155-65909174 None:intergenic 50.0%
GGTTTCTCAATCTTGGGAGC+CGG - chr1.2:65909305-65909324 None:intergenic 50.0%
GTTTCTCAATCTTGGGGGCA+GGG - chr1.2:65909409-65909428 None:intergenic 50.0%
TTTCTCAATCTTGGGGGCAG+GGG - chr1.2:65909408-65909427 None:intergenic 50.0%
!! GACTTCTCAGTGTTTGGTGC+TGG - chr1.2:65908882-65908901 None:intergenic 50.0%
!! GGCTTCTCAACCTTTGGAGT+TGG - chr1.2:65909200-65909219 None:intergenic 50.0%
!! GGTCTCTCTATCTCTGGAAC+GGG - chr1.2:65909098-65909117 None:intergenic 50.0%
!! TAGTCCGGTTTTGTGGGGTT+TGG - chr1.2:65909350-65909369 None:intergenic 50.0%
GATGCCATGGTTCACATCGG+TGG - chr1.2:65910388-65910407 None:intergenic 55.0%
GGTTTCTCAATCTTGGGGGC+AGG - chr1.2:65909410-65909429 None:intergenic 55.0%
GTTCCCACCGATGTGAACCA+TGG + chr1.2:65910381-65910400 MS.gene20763:CDS 55.0%
GTTTCTCGATCTTGGGGGCT+GGG - chr1.2:65909514-65909533 None:intergenic 55.0%
TTTCTCGATCTTGGGGGCTG+GGG - chr1.2:65909513-65909532 None:intergenic 55.0%
!! AGGAACTGGTTTGGCTTGCG+AGG - chr1.2:65910487-65910506 None:intergenic 55.0%
GGTTTCTCGATCTTGGGGGC+TGG - chr1.2:65909515-65909534 None:intergenic 60.0%
!! GAGGAGCACCACTGATGCCA+TGG - chr1.2:65910401-65910420 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 65908789 65910518 65908789 ID=MS.gene20763
chr1.2 mRNA 65908789 65910518 65908789 ID=MS.gene20763.t1;Parent=MS.gene20763
chr1.2 exon 65908789 65909995 65908789 ID=MS.gene20763.t1.exon1;Parent=MS.gene20763.t1
chr1.2 CDS 65908789 65909995 65908789 ID=cds.MS.gene20763.t1;Parent=MS.gene20763.t1
chr1.2 exon 65910187 65910518 65910187 ID=MS.gene20763.t1.exon2;Parent=MS.gene20763.t1
chr1.2 CDS 65910187 65910518 65910187 ID=cds.MS.gene20763.t1;Parent=MS.gene20763.t1
Gene Sequence

>MS.gene20763

ATGATGGCTTCTCATAGATCCATTTTCGCTATCTCTATCCTTCTTTTTGCGTTGCTAGCCATAGCCTCCGCAACTGATTATGTGTATGGTCCAGCACCAAACACTGAGAAGTCTGAACCCCAAACTGAAGTAGATAAGAAGTCATACTCTACAAAATCAGACTATGAAGTTTCCAAATCCAAAACAAATTATGAGTATAGTCCAACTCCAGAGGTTGAGAAATCCAAACTCGATATAGATTATGAAGTACATTTAATAAAACCAAACTATAAAGTTCCCAAACCCAAAGTAAATTATAGATATGATCCCGTTCCAGAGATAGAGAGACCTGAACCCGAAACATATTACAAACACCTCACCAAACCAGACTATGAAGTTCCCCAACCTAAAATAGACTACGGGTATAGTCCAACTCCAAAGGTTGAGAAGCCTAAGTCCGAAGAAGTTTACTCATCAAACCCCACAAAACCAGACTATGAAGTTCCCAAACCCAAAATAGATTATGGCTATGCACCGGCTCCCAAGATTGAGAAACCCAAGTCCGAAGCTGTTTACACACCAAACCCCACAAAACCGGACTATGAAGTTCCCAAATCTAAACCAAATTATGAATATGCCCCTGCCCCCAAGATTGAGAAACCAAAGTCCGAAGCAATTTACACACCAAACCCCACAAAACCAGACTATGAAGTTCCCAAACCCAAAACAGATTATGAGTATGCCCCAGCCCCCAAGATCGAGAAACCAAAGTCTGAAGTAGTTTACACACAAAACCCCACAAAACCTGACTATAAAGTTCCCAAATCCAAAACTGATTATGGGTATGCCCCGACCCCCAAAATCGAAAAATCCAAGTCTGAAGCAGTCTACACACCAAACCCCACAAAACCAAACTATGAAGTTTCCAAACCCAAAATAGATTATGAGTATGCACCAGCCCCCAAGATCGAGAAACCAAAGTCTGAAGCAGTTTACACACCAAAATCCACAAAACCAGACTATGAAATTCCCAAATCAAATTATGATTATTCCCCAACACCAAAAATCGAGAAACCCAAACTTGATACAGATTATAAACTACTCCCCACAAAACCAGATTATGAAGTTCCAAAACCAAAAGAAAACTACGAAGTGCAACTGCCCACAATCATTAGTGTTCAAGGAGTGGTTTTGTGTAAATCTGGCTCTAATTATTATCCAATTCAAGGTAATTTTTCGCTTATATGATAGAAAGGAAAAGAAAATTAAAAACATAACTCACCTAGCTATAATACTTTTTTTACAACATTTCTTATGTCTTTCATGTTATAAATTGAAACCAATTAGTTTATGTTAGTTAGGACTTTAAATTTGATGATATATCATTGATTATATATTTATCATGTGTGAGAAATGCAGGGGCCGTAGCACGAGTTACATGTGAATGTGTGAATGAGCTTGGATATGAGACAGGTCCTATAACAGGATTGAGACATGTAACAGATAGTAAAGGTTATTACTATGGTACATTGTCACTTGCAGAGTTGGGATCAAAATTGAAGATTAACGAATGCAAAGCATACCTAGAGAGTTCTCCATTAGAGACATGTAAAGTTCCCACCGATGTGAACCATGGCATCAGTGGTGCTCCTCTTTCTTCGTACCGTCTCCTTGAAAACAATTCCAGATTGTACTCTATTGCACCTTTCTTCTACACCTCGCAAGCCAAACCAGTTCCTAATGGTTATTAA
Protein sequence

>MS.gene20763.t1

MMASHRSIFAISILLFALLAIASATDYVYGPAPNTEKSEPQTEVDKKSYSTKSDYEVSKSKTNYEYSPTPEVEKSKLDIDYEVHLIKPNYKVPKPKVNYRYDPVPEIERPEPETYYKHLTKPDYEVPQPKIDYGYSPTPKVEKPKSEEVYSSNPTKPDYEVPKPKIDYGYAPAPKIEKPKSEAVYTPNPTKPDYEVPKSKPNYEYAPAPKIEKPKSEAIYTPNPTKPDYEVPKPKTDYEYAPAPKIEKPKSEVVYTQNPTKPDYKVPKSKTDYGYAPTPKIEKSKSEAVYTPNPTKPNYEVSKPKIDYEYAPAPKIEKPKSEAVYTPKSTKPDYEIPKSNYDYSPTPKIEKPKLDTDYKLLPTKPDYEVPKPKENYEVQLPTIISVQGVVLCKSGSNYYPIQGAVARVTCECVNELGYETGPITGLRHVTDSKGYYYGTLSLAELGSKLKINECKAYLESSPLETCKVPTDVNHGISGAPLSSYRLLENNSRLYSIAPFFYTSQAKPVPNGY