Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20874.t1 | XP_013469155.1 | 94.9 | 236 | 12 | 0 | 1 | 236 | 1 | 236 | 1.10E-97 | 366.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20874.t1 | A0A072VMF3 | 94.9 | 236 | 12 | 0 | 1 | 236 | 32 | 267 | 7.6e-98 | 366.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050352 | MS.gene20874 | 0.975374 | 7.78E-140 | -1.69E-46 |
| MS.gene054142 | MS.gene20874 | 0.81057 | 1.08E-50 | -1.69E-46 |
| MS.gene057684 | MS.gene20874 | -0.822691 | 2.07E-53 | -1.69E-46 |
| MS.gene059900 | MS.gene20874 | -0.809542 | 1.80E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20874.t1 | MTR_1g086670 | 97.881 | 236 | 5 | 0 | 1 | 236 | 1 | 236 | 6.54e-172 | 473 |
| MS.gene20874.t1 | MTR_1g086670 | 97.881 | 236 | 5 | 0 | 1 | 236 | 32 | 267 | 8.42e-172 | 473 |
| MS.gene20874.t1 | MTR_2g033650 | 40.807 | 223 | 105 | 7 | 9 | 229 | 7 | 204 | 5.83e-31 | 114 |
| MS.gene20874.t1 | MTR_4g122710 | 33.816 | 207 | 132 | 3 | 14 | 219 | 12 | 214 | 2.30e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20874.t1 | AT1G02380 | 34.404 | 218 | 106 | 8 | 10 | 218 | 8 | 197 | 7.20e-27 | 103 |
| MS.gene20874.t1 | AT3G17120 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.14e-18 | 80.1 |
| MS.gene20874.t1 | AT3G17120 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.14e-18 | 80.1 |
| MS.gene20874.t1 | AT3G17120 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.14e-18 | 80.1 |
| MS.gene20874.t1 | AT3G17120 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.14e-18 | 80.1 |
| MS.gene20874.t1 | AT3G17120 | 43.860 | 114 | 62 | 2 | 112 | 224 | 78 | 190 | 5.14e-18 | 80.1 |
| MS.gene20874.t1 | AT4G01960 | 29.493 | 217 | 125 | 7 | 9 | 218 | 8 | 203 | 7.36e-18 | 80.1 |
| MS.gene20874.t1 | AT4G01960 | 29.493 | 217 | 125 | 7 | 9 | 218 | 8 | 203 | 7.36e-18 | 80.1 |
| MS.gene20874.t1 | AT4G01960 | 30.270 | 185 | 98 | 7 | 9 | 184 | 8 | 170 | 6.36e-15 | 71.2 |
Find 40 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGAATTGTTGGTGGATAA+AGG | 0.283179 | 1.3:-61434358 | MS.gene20874:CDS |
| GCCTCCTAGAGGTCCATCTT+TGG | 0.299097 | 1.3:-61434257 | MS.gene20874:CDS |
| AAAGGTTTAGAACATGTTAA+TGG | 0.299452 | 1.3:-61434340 | MS.gene20874:CDS |
| AATGGGGTTATGAATTTAGA+TGG | 0.319095 | 1.3:-61434466 | MS.gene20874:CDS |
| GCCAGGTTCATCTCCATTGC+TGG | 0.372215 | 1.3:+61431760 | None:intergenic |
| GAACATGTTAATGGAAATCA+TGG | 0.386666 | 1.3:-61434331 | MS.gene20874:CDS |
| AGAGATTCAACTTCAAAGAA+TGG | 0.402293 | 1.3:-61434505 | MS.gene20874:CDS |
| TTCCTCGTCATCATATTTCA+CGG | 0.422957 | 1.3:-61434073 | MS.gene20874:intron |
| GAATTTAGATGGATCAGAAA+AGG | 0.435059 | 1.3:-61434455 | MS.gene20874:CDS |
| AATTTAGATGGATCAGAAAA+GGG | 0.467182 | 1.3:-61434454 | MS.gene20874:CDS |
| TCTGATGCAACAGCTGACTC+AGG | 0.494621 | 1.3:+61431824 | None:intergenic |
| CTATATTGATGCAGGTATGC+AGG | 0.495267 | 1.3:-61431610 | MS.gene20874:intron |
| CTGCGAGTAGTGCGTCTGTT+GGG | 0.505670 | 1.3:-61431859 | MS.gene20874:CDS |
| AGAGGTCCATCTTTGGATGC+TGG | 0.505685 | 1.3:-61434250 | MS.gene20874:CDS |
| GTTGAATTTGACATTGAAAG+TGG | 0.538098 | 1.3:-61434565 | MS.gene20874:CDS |
| TCTGCGAGTAGTGCGTCTGT+TGG | 0.541422 | 1.3:-61431860 | MS.gene20874:CDS |
| CTGATGCAACAGCTGACTCA+GGG | 0.544449 | 1.3:+61431825 | None:intergenic |
| ACACTTGGAAAGTGAGAGCC+AGG | 0.544538 | 1.3:+61431743 | None:intergenic |
| TGATCACCAGCATCCAAAGA+TGG | 0.549760 | 1.3:+61434244 | None:intergenic |
| GCATCCAAAGATGGACCTCT+AGG | 0.550353 | 1.3:+61434253 | None:intergenic |
| ACGAACTTCAACACCAGCAA+TGG | 0.552140 | 1.3:-61431773 | MS.gene20874:CDS |
| TGAATGTAATCTAGAATTGT+TGG | 0.565076 | 1.3:-61434368 | MS.gene20874:CDS |
| ATATACAAATCTTTCTGCCA+TGG | 0.581731 | 1.3:-61434113 | MS.gene20874:CDS |
| GATGGACCTCTAGGAGGCAA+AGG | 0.587737 | 1.3:+61434262 | None:intergenic |
| TTGCGTTGAGGAAGCGTGCG+AGG | 0.596295 | 1.3:-61434195 | MS.gene20874:CDS |
| TTGCTGGTGTTGAAGTTCGT+AGG | 0.609539 | 1.3:+61431776 | None:intergenic |
| TTTGTATATGTCGAAGACGA+CGG | 0.611177 | 1.3:+61434127 | None:intergenic |
| ATGTAATCTAGAATTGTTGG+TGG | 0.614154 | 1.3:-61434365 | MS.gene20874:CDS |
| ACCAGCAATGGAGATGAACC+TGG | 0.617162 | 1.3:-61431761 | MS.gene20874:CDS |
| GGACCTCTAGGAGGCAAAGG+TGG | 0.627162 | 1.3:+61434265 | None:intergenic |
| TCAGCTGTTGCATCAGACGA+AGG | 0.631536 | 1.3:-61431818 | MS.gene20874:CDS |
| ATTGATGCAGGTATGCAGGA+AGG | 0.637045 | 1.3:-61431606 | MS.gene20874:intron |
| TGGTGAAAACACGAGCGAAG+AGG | 0.655654 | 1.3:-61434545 | MS.gene20874:CDS |
| TACCGTGAAATATGATGACG+AGG | 0.663224 | 1.3:+61434071 | None:intergenic |
| ATAACCCCATTCCATGACCA+AGG | 0.663825 | 1.3:+61434478 | None:intergenic |
| TGGTGATCATAAATTTGTGA+AGG | 0.670977 | 1.3:-61434230 | MS.gene20874:CDS |
| AAGCCACCTTTGCCTCCTAG+AGG | 0.671952 | 1.3:-61434268 | MS.gene20874:CDS |
| TCCAAAGATGGACCTCTAGG+AGG | 0.675340 | 1.3:+61434256 | None:intergenic |
| AATTAGCTGAGCTTGCGTTG+AGG | 0.678634 | 1.3:-61434207 | MS.gene20874:CDS |
| TGATGCAACAGCTGACTCAG+GGG | 0.699610 | 1.3:+61431826 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTCATAATTACTTAAAT+AGG | - | chr1.3:61433738-61433757 | MS.gene20874:intron | 10.0% |
| !! | AAAAAGTAAAAAGTTTGTAT+AGG | + | chr1.3:61432729-61432748 | None:intergenic | 15.0% |
| !!! | TCGTTTTTTCAAATTATTAT+CGG | - | chr1.3:61434033-61434052 | MS.gene20874:intron | 15.0% |
| !! | AATACAAAAGATTACGTATA+TGG | + | chr1.3:61432300-61432319 | None:intergenic | 20.0% |
| !! | ACCACAATGAAAATTTATAA+AGG | + | chr1.3:61433202-61433221 | None:intergenic | 20.0% |
| !! | TAAAGATGTTCATATGAAAT+AGG | + | chr1.3:61433467-61433486 | None:intergenic | 20.0% |
| !! | TACAAATACAATTGAATTCT+AGG | + | chr1.3:61432519-61432538 | None:intergenic | 20.0% |
| !! | TGGGAAAAATTATGTATATA+TGG | - | chr1.3:61434520-61434539 | MS.gene20874:CDS | 20.0% |
| !!! | ACTTTTTTCTTAAATAGAGA+AGG | + | chr1.3:61433846-61433865 | None:intergenic | 20.0% |
| !!! | TCCTTTATAAATTTTCATTG+TGG | - | chr1.3:61433198-61433217 | MS.gene20874:intron | 20.0% |
| !!! | TTACTTTTTCAACTCTTATA+AGG | - | chr1.3:61432740-61432759 | MS.gene20874:intron | 20.0% |
| ! | AATTTAGATGGATCAGAAAA+GGG | - | chr1.3:61431749-61431768 | MS.gene20874:CDS | 25.0% |
| ! | CGAATGTACATTATATCATA+AGG | - | chr1.3:61433021-61433040 | MS.gene20874:intron | 25.0% |
| ! | CTCTATTTAAGAAAAAAGTC+TGG | - | chr1.3:61433847-61433866 | MS.gene20874:intron | 25.0% |
| ! | GAAATGATTATTCAGTATCA+GGG | + | chr1.3:61432973-61432992 | None:intergenic | 25.0% |
| ! | GTTCATATATATTTCACATG+CGG | - | chr1.3:61432403-61432422 | MS.gene20874:intron | 25.0% |
| ! | TAATTGATATATTAGTTCGC+TGG | + | chr1.3:61433520-61433539 | None:intergenic | 25.0% |
| ! | TATATAATCGAATACACACT+TGG | + | chr1.3:61434478-61434497 | None:intergenic | 25.0% |
| ! | TCAAAGAGAAAAAGAAAAAG+AGG | - | chr1.3:61431616-61431635 | MS.gene20874:intron | 25.0% |
| ! | TCAGTTAATTCAAACTCAAT+TGG | - | chr1.3:61434212-61434231 | MS.gene20874:CDS | 25.0% |
| ! | TCATAATTACTTAAATAGGC+CGG | - | chr1.3:61433742-61433761 | MS.gene20874:intron | 25.0% |
| ! | TGAAATGATTATTCAGTATC+AGG | + | chr1.3:61432974-61432993 | None:intergenic | 25.0% |
| !! | AAAAGCCTATTTAGCTTAAT+AGG | + | chr1.3:61433810-61433829 | None:intergenic | 25.0% |
| !! | AAAGGTTTAGAACATGTTAA+TGG | - | chr1.3:61431863-61431882 | MS.gene20874:CDS | 25.0% |
| !! | AAATTACATGTTCTTTTGCT+GGG | - | chr1.3:61432154-61432173 | MS.gene20874:intron | 25.0% |
| !! | ATAATCAACATGAGTTTTCA+GGG | - | chr1.3:61433557-61433576 | MS.gene20874:intron | 25.0% |
| !! | TAAATTACATGTTCTTTTGC+TGG | - | chr1.3:61432153-61432172 | MS.gene20874:intron | 25.0% |
| !! | TATGAAATAGGCTTTTAAAC+AGG | + | chr1.3:61433455-61433474 | None:intergenic | 25.0% |
| !! | TCAAATTCTTGTGATGTTTT+TGG | - | chr1.3:61431806-61431825 | MS.gene20874:CDS | 25.0% |
| !! | TGAATGTAATCTAGAATTGT+TGG | - | chr1.3:61431835-61431854 | MS.gene20874:CDS | 25.0% |
| !!! | TAGTTGTTTTATAGCTATGA+GGG | - | chr1.3:61432943-61432962 | MS.gene20874:intron | 25.0% |
| !!! | TTAGTTGTTTTATAGCTATG+AGG | - | chr1.3:61432942-61432961 | MS.gene20874:intron | 25.0% |
| !!! | TTTTGAAATCAAATCTGCAT+AGG | - | chr1.3:61432787-61432806 | MS.gene20874:intron | 25.0% |
| AAAGAATATCAACAAGTCCT+TGG | + | chr1.3:61433155-61433174 | None:intergenic | 30.0% | |
| AATGGGGTTATGAATTTAGA+TGG | - | chr1.3:61431737-61431756 | MS.gene20874:intron | 30.0% | |
| AGAGATTCAACTTCAAAGAA+TGG | - | chr1.3:61431698-61431717 | MS.gene20874:intron | 30.0% | |
| AGATATAGAGGATATCACTT+GGG | - | chr1.3:61432680-61432699 | MS.gene20874:intron | 30.0% | |
| ATATACAAATCTTTCTGCCA+TGG | - | chr1.3:61432090-61432109 | MS.gene20874:intron | 30.0% | |
| CATATGCTTACATCTCAAAT+TGG | - | chr1.3:61432267-61432286 | MS.gene20874:intron | 30.0% | |
| CTTAAGATTGATGTTAGTTG+TGG | + | chr1.3:61432602-61432621 | None:intergenic | 30.0% | |
| GAAAAAAATAGTGATGACCA+TGG | + | chr1.3:61432110-61432129 | None:intergenic | 30.0% | |
| GAACATGTTAATGGAAATCA+TGG | - | chr1.3:61431872-61431891 | MS.gene20874:intron | 30.0% | |
| GAATTTAGATGGATCAGAAA+AGG | - | chr1.3:61431748-61431767 | MS.gene20874:CDS | 30.0% | |
| GTAATTCACAATTACAGAAG+TGG | + | chr1.3:61433081-61433100 | None:intergenic | 30.0% | |
| GTTGAATTTGACATTGAAAG+TGG | - | chr1.3:61431638-61431657 | MS.gene20874:intron | 30.0% | |
| TAGATATAGAGGATATCACT+TGG | - | chr1.3:61432679-61432698 | MS.gene20874:intron | 30.0% | |
| TAGTCATCACATAGATATAG+AGG | - | chr1.3:61432668-61432687 | MS.gene20874:intron | 30.0% | |
| TCATTTCACATTATACAGAG+TGG | - | chr1.3:61432986-61433005 | MS.gene20874:intron | 30.0% | |
| TCATTTGTCTATATTGATGC+AGG | - | chr1.3:61434585-61434604 | MS.gene20874:CDS | 30.0% | |
| TCTATATCTATGTGATGACT+AGG | + | chr1.3:61432669-61432688 | None:intergenic | 30.0% | |
| TGATATAGAACACAAGAATC+AGG | + | chr1.3:61432465-61432484 | None:intergenic | 30.0% | |
| TGGTGATCATAAATTTGTGA+AGG | - | chr1.3:61431973-61431992 | MS.gene20874:intron | 30.0% | |
| TGTGTTTCATAGAGGATAAT+TGG | - | chr1.3:61434100-61434119 | MS.gene20874:CDS | 30.0% | |
| TGTTCAATCAAGATTGAAGA+AGG | + | chr1.3:61433103-61433122 | None:intergenic | 30.0% | |
| TTCTGCTACATCTCAAAATA+TGG | - | chr1.3:61432560-61432579 | MS.gene20874:intron | 30.0% | |
| TTTAAGAAAAAAGTCTGGCA+TGG | - | chr1.3:61433852-61433871 | MS.gene20874:intron | 30.0% | |
| TTTATCCTTATCGTTGCATA+GGG | + | chr1.3:61433936-61433955 | None:intergenic | 30.0% | |
| ! | AATTCTTGTGTTAAGTTGCA+AGG | - | chr1.3:61432490-61432509 | MS.gene20874:intron | 30.0% |
| ! | ATGTAATCTAGAATTGTTGG+TGG | - | chr1.3:61431838-61431857 | MS.gene20874:CDS | 30.0% |
| ! | GATAATCAACATGAGTTTTC+AGG | - | chr1.3:61433556-61433575 | MS.gene20874:intron | 30.0% |
| !! | ATAGGCTTTTAAAAAAGCCT+AGG | - | chr1.3:61433820-61433839 | MS.gene20874:intron | 30.0% |
| !! | ATTATACAGAGTGGATTTTG+TGG | - | chr1.3:61432995-61433014 | MS.gene20874:intron | 30.0% |
| ACTACTTTGTTGAAGTGGAT+GGG | - | chr1.3:61433285-61433304 | MS.gene20874:intron | 35.0% | |
| CAATGTCAGATGAGTTTGAT+AGG | + | chr1.3:61434156-61434175 | None:intergenic | 35.0% | |
| CATTTGTCTTGAATCTGCAA+TGG | - | chr1.3:61432911-61432930 | MS.gene20874:intron | 35.0% | |
| CCTGACCTATTAAGCTAAAT+AGG | - | chr1.3:61433802-61433821 | MS.gene20874:intron | 35.0% | |
| CTAAAAAGTAAGCCTATGAC+AGG | + | chr1.3:61433391-61433410 | None:intergenic | 35.0% | |
| GATATAGAGGATATCACTTG+GGG | - | chr1.3:61432681-61432700 | MS.gene20874:intron | 35.0% | |
| GCATAAAGGACACTAACATA+TGG | - | chr1.3:61433258-61433277 | MS.gene20874:intron | 35.0% | |
| GGATCAGAAAAGGGTAAAAA+TGG | - | chr1.3:61431758-61431777 | MS.gene20874:CDS | 35.0% | |
| GTCCTTTATGCTACAACTTT+AGG | + | chr1.3:61433249-61433268 | None:intergenic | 35.0% | |
| GTGTTGAATGTAACATGTGT+CGG | + | chr1.3:61434011-61434030 | None:intergenic | 35.0% | |
| GTTTATCCTTATCGTTGCAT+AGG | + | chr1.3:61433937-61433956 | None:intergenic | 35.0% | |
| TACTACTTTGTTGAAGTGGA+TGG | - | chr1.3:61433284-61433303 | MS.gene20874:intron | 35.0% | |
| TAGAGGATAATTGGATGTCT+AGG | - | chr1.3:61434109-61434128 | MS.gene20874:CDS | 35.0% | |
| TGCTGTAATCAATGCTCATT+TGG | - | chr1.3:61432190-61432209 | MS.gene20874:intron | 35.0% | |
| TTAGCTAAGACTTTCCTTTC+AGG | - | chr1.3:61434313-61434332 | MS.gene20874:CDS | 35.0% | |
| TTCCTCGTCATCATATTTCA+CGG | - | chr1.3:61432130-61432149 | MS.gene20874:intron | 35.0% | |
| TTCTTAAATAGAGAAGGCCT+AGG | + | chr1.3:61433840-61433859 | None:intergenic | 35.0% | |
| TTTGTATATGTCGAAGACGA+CGG | + | chr1.3:61432079-61432098 | None:intergenic | 35.0% | |
| ! | ACAGCTTCAATCAAAAGTGT+AGG | + | chr1.3:61433969-61433988 | None:intergenic | 35.0% |
| ! | AGCCATTCAAAAAGCCTTTT+TGG | + | chr1.3:61433777-61433796 | None:intergenic | 35.0% |
| ! | CCTATTTAGCTTAATAGGTC+AGG | + | chr1.3:61433805-61433824 | None:intergenic | 35.0% |
| ! | CTAGAATTGTTGGTGGATAA+AGG | - | chr1.3:61431845-61431864 | MS.gene20874:CDS | 35.0% |
| ! | CTTCAAAGAATGGTTTTCCT+TGG | - | chr1.3:61431708-61431727 | MS.gene20874:intron | 35.0% |
| ! | GCTTAGGCCTTCTAAAAAAT+TGG | + | chr1.3:61433357-61433376 | None:intergenic | 35.0% |
| !! | AAAAGCCTTTTTGGCCTATT+AGG | + | chr1.3:61433768-61433787 | None:intergenic | 35.0% |
| !! | TGAGCATTGATTACAGCATA+TGG | + | chr1.3:61432188-61432207 | None:intergenic | 35.0% |
| !!! | CTGTCATAGGCTTACTTTTT+AGG | - | chr1.3:61433389-61433408 | MS.gene20874:intron | 35.0% |
| AGAAACTTACTACAGTGCCA+AGG | - | chr1.3:61433135-61433154 | MS.gene20874:intron | 40.0% | |
| CTATATTGATGCAGGTATGC+AGG | - | chr1.3:61434593-61434612 | MS.gene20874:CDS | 40.0% | |
| GGCCTAAAGTTGTAGCATAA+AGG | - | chr1.3:61433244-61433263 | MS.gene20874:intron | 40.0% | |
| GTCGTACTACTTTGTTGAAG+TGG | - | chr1.3:61433280-61433299 | MS.gene20874:intron | 40.0% | |
| TCCATGTCTGTGTTTCATAG+AGG | - | chr1.3:61434092-61434111 | MS.gene20874:CDS | 40.0% | |
| TCCTCTATGAAACACAGACA+TGG | + | chr1.3:61434096-61434115 | None:intergenic | 40.0% | |
| TCGCAGATTTGATTCCTGAA+AGG | + | chr1.3:61434330-61434349 | None:intergenic | 40.0% | |
| TTGTTGAAGTGGATGGGAAT+AGG | - | chr1.3:61433291-61433310 | MS.gene20874:intron | 40.0% | |
| ! | AAGGCTTTTTGAATGGCTTG+TGG | - | chr1.3:61433779-61433798 | MS.gene20874:intron | 40.0% |
| ! | AGAATGGTTTTCCTTGGTCA+TGG | - | chr1.3:61431714-61431733 | MS.gene20874:intron | 40.0% |
| ! | AGGCCTTCTAAAAAATTGGC+AGG | + | chr1.3:61433353-61433372 | None:intergenic | 40.0% |
| ! | CTTTTCCAAAGCTGTGCAAT+GGG | - | chr1.3:61434501-61434520 | MS.gene20874:CDS | 40.0% |
| ! | GGCCAAAAAGGCTTTTTGAA+TGG | - | chr1.3:61433772-61433791 | MS.gene20874:intron | 40.0% |
| ! | GTTTTCCTTGGTCATGGAAT+GGG | - | chr1.3:61431720-61431739 | MS.gene20874:intron | 40.0% |
| ! | TACCGTGAAATATGATGACG+AGG | + | chr1.3:61432135-61432154 | None:intergenic | 40.0% |
| ! | TCTTTTCCAAAGCTGTGCAA+TGG | - | chr1.3:61434500-61434519 | MS.gene20874:CDS | 40.0% |
| ! | TGTTGTCTTTCTGCTCTGAA+AGG | - | chr1.3:61433222-61433241 | MS.gene20874:intron | 40.0% |
| ! | TTTTCCTTGGTCATGGAATG+GGG | - | chr1.3:61431721-61431740 | MS.gene20874:intron | 40.0% |
| ! | TTTTTCCCATTGCACAGCTT+TGG | + | chr1.3:61434509-61434528 | None:intergenic | 40.0% |
| !! | GTTGTCTTTCTGCTCTGAAA+GGG | - | chr1.3:61433223-61433242 | MS.gene20874:intron | 40.0% |
| !!! | TGGCCTGCCAATTTTTTAGA+AGG | - | chr1.3:61433347-61433366 | MS.gene20874:intron | 40.0% |
| !!! | TTTTTTAGAAGGCCTAAGCC+TGG | - | chr1.3:61433358-61433377 | MS.gene20874:intron | 40.0% |
| AAGCCTTACAAAGCCTAGCT+CGG | + | chr1.3:61433322-61433341 | None:intergenic | 45.0% | |
| AATTAGCTGAGCTTGCGTTG+AGG | - | chr1.3:61431996-61432015 | MS.gene20874:intron | 45.0% | |
| ACGAACTTCAACACCAGCAA+TGG | - | chr1.3:61434430-61434449 | MS.gene20874:CDS | 45.0% | |
| ACGACACGACACTAACACAT+CGG | + | chr1.3:61434061-61434080 | None:intergenic | 45.0% | |
| AGCTGCCTGTATCAGTACAT+TGG | - | chr1.3:61432376-61432395 | MS.gene20874:intron | 45.0% | |
| ATAACCCCATTCCATGACCA+AGG | + | chr1.3:61431728-61431747 | None:intergenic | 45.0% | |
| ATTGATGCAGGTATGCAGGA+AGG | - | chr1.3:61434597-61434616 | MS.gene20874:CDS | 45.0% | |
| CATGCGGCTCTTCTAACATT+TGG | - | chr1.3:61432419-61432438 | MS.gene20874:intron | 45.0% | |
| CCTTATCGTTGCATAGGGAT+GGG | + | chr1.3:61433931-61433950 | None:intergenic | 45.0% | |
| CTTAAATAGGCCGGCCTAAT+AGG | - | chr1.3:61433751-61433770 | MS.gene20874:intron | 45.0% | |
| TCCTTATCGTTGCATAGGGA+TGG | + | chr1.3:61433932-61433951 | None:intergenic | 45.0% | |
| TGATCACCAGCATCCAAAGA+TGG | + | chr1.3:61431962-61431981 | None:intergenic | 45.0% | |
| ! | AGGCTTTTAAACAGGCTAGC+AGG | + | chr1.3:61433447-61433466 | None:intergenic | 45.0% |
| ! | CCAAGCCAATGTACTGATAC+AGG | + | chr1.3:61432384-61432403 | None:intergenic | 45.0% |
| ! | CCTGTATCAGTACATTGGCT+TGG | - | chr1.3:61432381-61432400 | MS.gene20874:intron | 45.0% |
| ! | GGTTTTCCTTGGTCATGGAA+TGG | - | chr1.3:61431719-61431738 | MS.gene20874:intron | 45.0% |
| ! | TTGCTGGTGTTGAAGTTCGT+AGG | + | chr1.3:61434430-61434449 | None:intergenic | 45.0% |
| !!! | TTACTTTTTAGGCCTGAGCC+TGG | - | chr1.3:61433400-61433419 | MS.gene20874:intron | 45.0% |
| ACACTTGGAAAGTGAGAGCC+AGG | + | chr1.3:61434463-61434482 | None:intergenic | 50.0% | |
| ACCAGCAATGGAGATGAACC+TGG | - | chr1.3:61434442-61434461 | MS.gene20874:CDS | 50.0% | |
| AGAGGTCCATCTTTGGATGC+TGG | - | chr1.3:61431953-61431972 | MS.gene20874:intron | 50.0% | |
| CCCATCCCTATGCAACGATA+AGG | - | chr1.3:61433928-61433947 | MS.gene20874:intron | 50.0% | |
| CGTTGCATAGGGATGGGAAT+AGG | + | chr1.3:61433925-61433944 | None:intergenic | 50.0% | |
| GAAAAAAGTCTGGCATGGCC+TGG | - | chr1.3:61433857-61433876 | MS.gene20874:intron | 50.0% | |
| GAAGTGGATGGGAATAGGCT+GGG | - | chr1.3:61433296-61433315 | MS.gene20874:intron | 50.0% | |
| GCATCCAAAGATGGACCTCT+AGG | + | chr1.3:61431953-61431972 | None:intergenic | 50.0% | |
| TAGTGTCGTGTCGTCGTGTT+AGG | - | chr1.3:61434067-61434086 | MS.gene20874:intron | 50.0% | |
| TATCAGGCTTTCAGAAGGCC+AGG | + | chr1.3:61433421-61433440 | None:intergenic | 50.0% | |
| TCAGCTGTTGCATCAGACGA+AGG | - | chr1.3:61434385-61434404 | MS.gene20874:CDS | 50.0% | |
| TCCAAAGATGGACCTCTAGG+AGG | + | chr1.3:61431950-61431969 | None:intergenic | 50.0% | |
| TGAAGTGGATGGGAATAGGC+TGG | - | chr1.3:61433295-61433314 | MS.gene20874:intron | 50.0% | |
| TGGTGAAAACACGAGCGAAG+AGG | - | chr1.3:61431658-61431677 | MS.gene20874:intron | 50.0% | |
| ! | CTGATGCAACAGCTGACTCA+GGG | + | chr1.3:61434381-61434400 | None:intergenic | 50.0% |
| ! | GGCCTTCTGAAAGCCTGATA+CGG | - | chr1.3:61433421-61433440 | MS.gene20874:intron | 50.0% |
| ! | GGCTTTGTAAGGCTTGAGCT+TGG | - | chr1.3:61433327-61433346 | MS.gene20874:intron | 50.0% |
| ! | TCTGATGCAACAGCTGACTC+AGG | + | chr1.3:61434382-61434401 | None:intergenic | 50.0% |
| ! | TGATGCAACAGCTGACTCAG+GGG | + | chr1.3:61434380-61434399 | None:intergenic | 50.0% |
| !! | GCCTTTTTGGCCTATTAGGC+CGG | + | chr1.3:61433764-61433783 | None:intergenic | 50.0% |
| !!! | GGTGGCTTTTGAGGCTTTCT+TGG | + | chr1.3:61431923-61431942 | None:intergenic | 50.0% |
| AAGCCACCTTTGCCTCCTAG+AGG | - | chr1.3:61431935-61431954 | MS.gene20874:intron | 55.0% | |
| CATAGGGATGGGAATAGGCC+AGG | + | chr1.3:61433920-61433939 | None:intergenic | 55.0% | |
| CTGCGAGTAGTGCGTCTGTT+GGG | - | chr1.3:61434344-61434363 | MS.gene20874:CDS | 55.0% | |
| GCCAGGTTCATCTCCATTGC+TGG | + | chr1.3:61434446-61434465 | None:intergenic | 55.0% | |
| GCCGGCCTAATAGGCCAAAA+AGG | - | chr1.3:61433760-61433779 | MS.gene20874:intron | 55.0% | |
| GCCTCCTAGAGGTCCATCTT+TGG | - | chr1.3:61431946-61431965 | MS.gene20874:intron | 55.0% | |
| GGCCGTATCAGGCTTTCAGA+AGG | + | chr1.3:61433426-61433445 | None:intergenic | 55.0% | |
| GTCGGACACTGACACGTGTT+AGG | + | chr1.3:61433993-61434012 | None:intergenic | 55.0% | |
| TCTGCGAGTAGTGCGTCTGT+TGG | - | chr1.3:61434343-61434362 | MS.gene20874:CDS | 55.0% | |
| ! | GATGGACCTCTAGGAGGCAA+AGG | + | chr1.3:61431944-61431963 | None:intergenic | 55.0% |
| ! | GGAGGCAAAGGTGGCTTTTG+AGG | + | chr1.3:61431932-61431951 | None:intergenic | 55.0% |
| ACAGGCTAGCAGGCCGTATC+AGG | + | chr1.3:61433437-61433456 | None:intergenic | 60.0% | |
| CCTATGGCCTAGCCTACGAC+AGG | + | chr1.3:61433883-61433902 | None:intergenic | 60.0% | |
| CCTGTCGTAGGCTAGGCCAT+AGG | - | chr1.3:61433880-61433899 | MS.gene20874:intron | 60.0% | |
| GCTTTCAGAAGGCCAGGCTC+AGG | + | chr1.3:61433415-61433434 | None:intergenic | 60.0% | |
| GTAAGCCTATGACAGGCCGC+AGG | + | chr1.3:61433384-61433403 | None:intergenic | 60.0% | |
| ! | GGACCTCTAGGAGGCAAAGG+TGG | + | chr1.3:61431941-61431960 | None:intergenic | 60.0% |
| ! | GGGCCGAGCTAGGCTTTGTA+AGG | - | chr1.3:61433316-61433335 | MS.gene20874:intron | 60.0% |
| ! | TTGCGTTGAGGAAGCGTGCG+AGG | - | chr1.3:61432008-61432027 | MS.gene20874:intron | 60.0% |
| AATAGGCCAGGCCGGCCTAC+AGG | + | chr1.3:61433908-61433927 | None:intergenic | 65.0% | |
| ATAGGCCAGGCCGGCCTACA+GGG | + | chr1.3:61433907-61433926 | None:intergenic | 65.0% | |
| GAAGGCCTAAGCCTGGCCTG+CGG | - | chr1.3:61433365-61433384 | MS.gene20874:intron | 65.0% | |
| GCTAGGCCATAGGCCCCTGT+AGG | - | chr1.3:61433890-61433909 | MS.gene20874:intron | 65.0% | |
| GGAATAGGCTGGGCCGAGCT+AGG | - | chr1.3:61433306-61433325 | MS.gene20874:intron | 65.0% | |
| GGGATGGGAATAGGCCAGGC+CGG | + | chr1.3:61433916-61433935 | None:intergenic | 65.0% | |
| ACAGGCCGCAGGCCAGGCTT+AGG | + | chr1.3:61433373-61433392 | None:intergenic | 70.0% | |
| CCTATGACAGGCCGCAGGCC+AGG | + | chr1.3:61433379-61433398 | None:intergenic | 70.0% | |
| CCTGGCCTGCGGCCTGTCAT+AGG | - | chr1.3:61433376-61433395 | MS.gene20874:intron | 70.0% | |
| GGCATGGCCTGGCCTGTCGT+AGG | - | chr1.3:61433868-61433887 | MS.gene20874:intron | 70.0% | |
| GGCCATAGGCCCCTGTAGGC+CGG | - | chr1.3:61433894-61433913 | MS.gene20874:intron | 70.0% | |
| GGCCTAGCCTACGACAGGCC+AGG | + | chr1.3:61433878-61433897 | None:intergenic | 70.0% | |
| GGCCTGGCCTGTCGTAGGCT+AGG | - | chr1.3:61433873-61433892 | MS.gene20874:intron | 70.0% | |
| TAGGCCAGGCCGGCCTACAG+GGG | + | chr1.3:61433906-61433925 | None:intergenic | 70.0% | |
| GGCCGGCCTACAGGGGCCTA+TGG | + | chr1.3:61433899-61433918 | None:intergenic | 75.0% | |
| TAGGCCCCTGTAGGCCGGCC+TGG | - | chr1.3:61433899-61433918 | MS.gene20874:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 61431602 | 61434623 | 61431602 | ID=MS.gene20874 |
| chr1.3 | mRNA | 61431602 | 61434623 | 61431602 | ID=MS.gene20874.t1;Parent=MS.gene20874 |
| chr1.3 | exon | 61434074 | 61434623 | 61434074 | ID=MS.gene20874.t1.exon1;Parent=MS.gene20874.t1 |
| chr1.3 | CDS | 61434074 | 61434623 | 61434074 | ID=cds.MS.gene20874.t1;Parent=MS.gene20874.t1 |
| chr1.3 | exon | 61431747 | 61431890 | 61431747 | ID=MS.gene20874.t1.exon2;Parent=MS.gene20874.t1 |
| chr1.3 | CDS | 61431747 | 61431890 | 61431747 | ID=cds.MS.gene20874.t1;Parent=MS.gene20874.t1 |
| chr1.3 | exon | 61431602 | 61431618 | 61431602 | ID=MS.gene20874.t1.exon3;Parent=MS.gene20874.t1 |
| chr1.3 | CDS | 61431602 | 61431618 | 61431602 | ID=cds.MS.gene20874.t1;Parent=MS.gene20874.t1 |
| Gene Sequence |
| Protein sequence |
