Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20913.t1 | XP_003591301.1 | 98.2 | 505 | 9 | 0 | 1 | 505 | 1 | 505 | 9.70E-258 | 899 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20913.t1 | Q9M115 | 62.8 | 514 | 172 | 9 | 2 | 505 | 4 | 508 | 2.2e-149 | 530.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20913.t1 | G7IBQ1 | 98.2 | 505 | 9 | 0 | 1 | 505 | 1 | 505 | 7.0e-258 | 899.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050297 | MS.gene20913 | 0.804135 | 2.50E-49 | -1.69E-46 |
| MS.gene057004 | MS.gene20913 | 0.804847 | 1.77E-49 | -1.69E-46 |
| MS.gene058197 | MS.gene20913 | 0.815874 | 7.39E-52 | -1.69E-46 |
| MS.gene058198 | MS.gene20913 | 0.816638 | 4.99E-52 | -1.69E-46 |
| MS.gene059300 | MS.gene20913 | 0.821071 | 4.91E-53 | -1.69E-46 |
| MS.gene06057 | MS.gene20913 | 0.806406 | 8.36E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20913.t1 | MTR_1g085980 | 98.218 | 505 | 9 | 0 | 1 | 505 | 1 | 505 | 0.0 | 1015 |
| MS.gene20913.t1 | MTR_3g115950 | 34.937 | 395 | 235 | 7 | 2 | 393 | 3 | 378 | 1.03e-68 | 232 |
| MS.gene20913.t1 | MTR_4g076120 | 37.346 | 324 | 175 | 5 | 1 | 298 | 2 | 323 | 2.23e-67 | 231 |
| MS.gene20913.t1 | MTR_4g082560 | 27.883 | 581 | 311 | 12 | 1 | 488 | 1 | 566 | 3.07e-62 | 214 |
| MS.gene20913.t1 | MTR_5g042870 | 31.368 | 475 | 246 | 13 | 1 | 421 | 1 | 449 | 3.94e-57 | 201 |
| MS.gene20913.t1 | MTR_3g115950 | 37.597 | 258 | 144 | 4 | 141 | 393 | 59 | 304 | 1.87e-50 | 181 |
| MS.gene20913.t1 | MTR_4g076120 | 52.055 | 146 | 70 | 0 | 153 | 298 | 104 | 249 | 7.58e-50 | 181 |
| MS.gene20913.t1 | MTR_5g042870 | 28.395 | 243 | 117 | 9 | 210 | 421 | 82 | 298 | 2.22e-14 | 75.9 |
| MS.gene20913.t1 | MTR_6g033315 | 27.363 | 201 | 122 | 5 | 155 | 344 | 149 | 336 | 2.49e-14 | 75.5 |
| MS.gene20913.t1 | MTR_4g116160 | 40.909 | 88 | 46 | 2 | 139 | 220 | 353 | 440 | 3.79e-14 | 75.1 |
| MS.gene20913.t1 | MTR_4g116160 | 40.909 | 88 | 46 | 2 | 139 | 220 | 180 | 267 | 5.27e-14 | 74.7 |
| MS.gene20913.t1 | MTR_4g116160 | 40.909 | 88 | 46 | 2 | 139 | 220 | 353 | 440 | 5.35e-14 | 75.1 |
| MS.gene20913.t1 | MTR_7g114080 | 26.667 | 225 | 137 | 7 | 114 | 328 | 127 | 333 | 1.82e-13 | 72.4 |
| MS.gene20913.t1 | MTR_7g114080 | 28.070 | 228 | 139 | 7 | 114 | 328 | 127 | 342 | 3.14e-13 | 71.6 |
| MS.gene20913.t1 | MTR_7g114080 | 36.842 | 114 | 55 | 5 | 102 | 211 | 117 | 217 | 3.32e-12 | 68.2 |
| MS.gene20913.t1 | MTR_6g038020 | 30.075 | 133 | 83 | 3 | 155 | 287 | 136 | 258 | 4.22e-12 | 68.6 |
| MS.gene20913.t1 | MTR_1g098390 | 30.075 | 133 | 84 | 3 | 155 | 287 | 135 | 258 | 4.67e-12 | 68.2 |
| MS.gene20913.t1 | MTR_6g038020 | 30.075 | 133 | 83 | 3 | 155 | 287 | 139 | 261 | 5.15e-12 | 68.2 |
| MS.gene20913.t1 | MTR_3g098840 | 28.571 | 133 | 85 | 3 | 155 | 287 | 150 | 272 | 7.13e-12 | 67.8 |
| MS.gene20913.t1 | MTR_4g021795 | 26.816 | 179 | 100 | 5 | 141 | 305 | 87 | 248 | 7.22e-12 | 66.6 |
| MS.gene20913.t1 | MTR_7g088360 | 30.075 | 133 | 79 | 3 | 155 | 287 | 161 | 279 | 8.06e-12 | 67.4 |
| MS.gene20913.t1 | MTR_4g092760 | 39.796 | 98 | 51 | 4 | 157 | 251 | 364 | 456 | 8.69e-12 | 67.8 |
| MS.gene20913.t1 | MTR_4g092760 | 38.776 | 98 | 52 | 4 | 157 | 251 | 275 | 367 | 1.08e-11 | 67.4 |
| MS.gene20913.t1 | MTR_7g114080 | 36.842 | 114 | 55 | 5 | 102 | 211 | 117 | 217 | 1.22e-11 | 66.2 |
| MS.gene20913.t1 | MTR_5g023230 | 42.373 | 59 | 34 | 0 | 158 | 216 | 170 | 228 | 2.42e-11 | 64.3 |
| MS.gene20913.t1 | MTR_7g088350 | 27.068 | 133 | 81 | 2 | 155 | 287 | 162 | 278 | 2.77e-11 | 65.9 |
| MS.gene20913.t1 | MTR_7g083480 | 29.545 | 132 | 81 | 3 | 157 | 287 | 151 | 271 | 3.32e-11 | 65.9 |
| MS.gene20913.t1 | MTR_1g094610 | 33.824 | 136 | 70 | 5 | 169 | 303 | 108 | 224 | 5.75e-11 | 63.5 |
| MS.gene20913.t1 | MTR_5g023230 | 42.373 | 59 | 34 | 0 | 158 | 216 | 150 | 208 | 7.08e-11 | 63.9 |
| MS.gene20913.t1 | MTR_5g023230 | 42.373 | 59 | 34 | 0 | 158 | 216 | 170 | 228 | 7.35e-11 | 63.9 |
| MS.gene20913.t1 | MTR_1g112830 | 45.000 | 60 | 33 | 0 | 157 | 216 | 462 | 521 | 9.05e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20913.t1 | AT4G01730 | 63.230 | 514 | 170 | 9 | 2 | 505 | 4 | 508 | 0.0 | 542 |
| MS.gene20913.t1 | AT2G33640 | 34.750 | 400 | 209 | 9 | 2 | 370 | 3 | 381 | 3.73e-71 | 237 |
| MS.gene20913.t1 | AT3G22180 | 36.170 | 329 | 179 | 5 | 1 | 306 | 2 | 322 | 4.26e-65 | 224 |
| MS.gene20913.t1 | AT4G15080 | 35.882 | 340 | 167 | 5 | 1 | 306 | 2 | 324 | 1.81e-64 | 222 |
| MS.gene20913.t1 | AT4G15080 | 35.882 | 340 | 167 | 5 | 1 | 306 | 2 | 324 | 1.81e-64 | 222 |
| MS.gene20913.t1 | AT1G69420 | 32.075 | 424 | 232 | 11 | 1 | 385 | 1 | 407 | 1.11e-61 | 212 |
| MS.gene20913.t1 | AT1G69420 | 32.075 | 424 | 232 | 11 | 1 | 385 | 1 | 407 | 1.11e-61 | 212 |
| MS.gene20913.t1 | AT3G26935 | 32.090 | 134 | 79 | 3 | 155 | 287 | 148 | 270 | 1.50e-15 | 79.3 |
| MS.gene20913.t1 | AT3G48760 | 27.228 | 202 | 128 | 5 | 155 | 348 | 157 | 347 | 5.85e-15 | 77.8 |
| MS.gene20913.t1 | AT5G20350 | 36.154 | 130 | 74 | 4 | 92 | 221 | 316 | 436 | 1.03e-13 | 74.3 |
| MS.gene20913.t1 | AT5G41060 | 29.851 | 134 | 82 | 3 | 155 | 287 | 79 | 201 | 2.51e-13 | 71.6 |
| MS.gene20913.t1 | AT5G41060 | 29.851 | 134 | 82 | 3 | 155 | 287 | 79 | 201 | 2.51e-13 | 71.6 |
| MS.gene20913.t1 | AT3G04970 | 42.105 | 76 | 39 | 2 | 153 | 224 | 66 | 140 | 2.79e-13 | 71.2 |
| MS.gene20913.t1 | AT2G14255 | 43.836 | 73 | 41 | 0 | 148 | 220 | 355 | 427 | 2.83e-13 | 72.4 |
| MS.gene20913.t1 | AT5G41060 | 29.851 | 134 | 82 | 3 | 155 | 287 | 146 | 268 | 4.50e-13 | 71.6 |
| MS.gene20913.t1 | AT3G56930 | 28.148 | 135 | 83 | 3 | 155 | 287 | 145 | 267 | 4.83e-13 | 71.6 |
| MS.gene20913.t1 | AT4G24630 | 30.075 | 133 | 83 | 3 | 155 | 287 | 135 | 257 | 5.36e-13 | 71.2 |
| MS.gene20913.t1 | AT5G41060 | 29.851 | 134 | 82 | 3 | 155 | 287 | 131 | 253 | 5.53e-13 | 71.2 |
| MS.gene20913.t1 | AT3G04970 | 43.836 | 73 | 36 | 2 | 153 | 221 | 153 | 224 | 6.33e-13 | 70.1 |
| MS.gene20913.t1 | AT3G04970 | 42.105 | 76 | 39 | 2 | 153 | 224 | 153 | 227 | 7.79e-13 | 70.5 |
| MS.gene20913.t1 | AT5G50020 | 30.075 | 133 | 83 | 4 | 155 | 287 | 135 | 257 | 1.86e-12 | 69.7 |
| MS.gene20913.t1 | AT5G50020 | 30.075 | 133 | 83 | 4 | 155 | 287 | 165 | 287 | 2.33e-12 | 69.3 |
| MS.gene20913.t1 | AT5G04270 | 29.921 | 127 | 75 | 3 | 169 | 295 | 105 | 217 | 2.50e-12 | 67.8 |
| MS.gene20913.t1 | AT3G09320 | 29.677 | 155 | 95 | 4 | 141 | 293 | 80 | 222 | 7.11e-12 | 66.6 |
| MS.gene20913.t1 | AT4G22750 | 26.291 | 213 | 135 | 5 | 85 | 285 | 33 | 235 | 2.02e-11 | 65.5 |
| MS.gene20913.t1 | AT5G05070 | 27.820 | 133 | 82 | 3 | 155 | 287 | 170 | 288 | 6.75e-11 | 64.7 |
Find 109 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGACTTGAAAGCCTTAA+TGG | 0.179701 | 1.3:-60938636 | None:intergenic |
| CCCCTTTGATCAACACAAAA+AGG | 0.201505 | 1.3:+60938376 | MS.gene20913:CDS |
| CTTAACTATGGATTCATTAT+TGG | 0.227661 | 1.3:+60936887 | MS.gene20913:CDS |
| AGAGAACTACCTTTCGTATT+AGG | 0.235966 | 1.3:-60937881 | None:intergenic |
| CCTGCAGAAAATCTTCTTCT+TGG | 0.247950 | 1.3:-60938654 | None:intergenic |
| GCAATTCCTAAGCTTAACTA+TGG | 0.264138 | 1.3:+60936875 | MS.gene20913:CDS |
| TTTCTTCTTCTTCTTGAAAC+TGG | 0.265760 | 1.3:-60936837 | None:intergenic |
| CATGGGGATTTATAGTTTCC+TGG | 0.270284 | 1.3:+60935645 | MS.gene20913:CDS |
| AATATTGGCAATGAGGGATT+TGG | 0.275748 | 1.3:+60938573 | MS.gene20913:CDS |
| ACGTCCTCTTCATCCTTTAC+AGG | 0.290395 | 1.3:+60935524 | MS.gene20913:CDS |
| AACTTCATGTATCACCATTA+AGG | 0.298327 | 1.3:+60938622 | MS.gene20913:CDS |
| CTTAGGAATTGCATTCCTTT+TGG | 0.301238 | 1.3:-60936864 | None:intergenic |
| AGTGGTTGAATAACTGTATT+GGG | 0.305251 | 1.3:+60937386 | MS.gene20913:intron |
| AATTACCATGAAGGAAAATA+TGG | 0.329971 | 1.3:-60935734 | None:intergenic |
| CTGCAATTGCGATATTTATC+AGG | 0.330793 | 1.3:+60937594 | MS.gene20913:CDS |
| CAGTGGTTGAATAACTGTAT+TGG | 0.338312 | 1.3:+60937385 | MS.gene20913:intron |
| AAATACAATGCCTACGATCT+TGG | 0.340037 | 1.3:-60938837 | None:intergenic |
| ACGAATGTGGAAAGAAATAT+TGG | 0.340460 | 1.3:+60938558 | MS.gene20913:CDS |
| AATACAATGCCTACGATCTT+GGG | 0.349348 | 1.3:-60938836 | None:intergenic |
| AATGAGAACTAACCATTAAC+AGG | 0.349646 | 1.3:-60937450 | None:intergenic |
| AGAGAATGAAGCCATGGAAT+TGG | 0.360067 | 1.3:+60938129 | MS.gene20913:CDS |
| GCTTATAGTTCAGCTGCATT+GGG | 0.362020 | 1.3:+60937834 | MS.gene20913:CDS |
| AGCTTATAGTTCAGCTGCAT+TGG | 0.379994 | 1.3:+60937833 | MS.gene20913:CDS |
| AAGGGTTTGATCACCATTGC+AGG | 0.380383 | 1.3:+60937272 | MS.gene20913:CDS |
| TTGAAAATGTGACAGTTTGT+AGG | 0.405221 | 1.3:+60935622 | MS.gene20913:intron |
| GAATAGAAAAGGAGCTTCAT+AGG | 0.409924 | 1.3:+60937636 | MS.gene20913:CDS |
| TCTTTCATAACAAATGGAAA+TGG | 0.412686 | 1.3:-60937022 | None:intergenic |
| AGCTTGAAACACATATTTCC+AGG | 0.415244 | 1.3:+60938769 | MS.gene20913:CDS |
| TCATCATCTTTCATAACAAA+TGG | 0.417582 | 1.3:-60937028 | None:intergenic |
| TCAGGTGCTTTGTGGATAAG+AGG | 0.417899 | 1.3:+60937612 | MS.gene20913:CDS |
| ATATTGGCAATGAGGGATTT+GGG | 0.422441 | 1.3:+60938574 | MS.gene20913:CDS |
| AATGAACTGTGCTCCCTCAT+TGG | 0.434720 | 1.3:-60938498 | None:intergenic |
| ATGTCGTCCTCTTTAAGATC+AGG | 0.449853 | 1.3:-60937064 | None:intergenic |
| GTGTGTTTCTATACTTTCCT+CGG | 0.453785 | 1.3:+60935670 | MS.gene20913:CDS |
| GAGGACCTATGACTATATTC+TGG | 0.454122 | 1.3:+60938096 | MS.gene20913:CDS |
| CTTTCATAACAAATGGAAAT+GGG | 0.456489 | 1.3:-60937021 | None:intergenic |
| TCAGATGACTATTACACATA+TGG | 0.457257 | 1.3:-60937696 | None:intergenic |
| TTTCTTTCCACATTCGTCAA+TGG | 0.463164 | 1.3:-60938552 | None:intergenic |
| ATGAATCCATAGTTAAGCTT+AGG | 0.465933 | 1.3:-60936881 | None:intergenic |
| TTGAAACTGGTTCTGTCTGT+AGG | 0.467295 | 1.3:-60936824 | None:intergenic |
| TGTTCAGTTATCAGCAAAGA+TGG | 0.472599 | 1.3:+60938801 | MS.gene20913:CDS |
| GATATTTATCAGGTGCTTTG+TGG | 0.473980 | 1.3:+60937604 | MS.gene20913:CDS |
| TTCATTAAGACCTCTTCCAT+TGG | 0.478810 | 1.3:+60938515 | MS.gene20913:CDS |
| TGAAGTTAGCAGGTGTGTCT+AGG | 0.480378 | 1.3:+60938745 | MS.gene20913:CDS |
| AAAATCCTTGACATTAGTGT+TGG | 0.485995 | 1.3:-60938214 | None:intergenic |
| AACTGAACATAGAACCTGCC+TGG | 0.487655 | 1.3:-60938787 | None:intergenic |
| CACTCGTCTTCAACGGATCA+AGG | 0.488073 | 1.3:-60936979 | None:intergenic |
| TTCACGTAAGCATTAACCCT+TGG | 0.489341 | 1.3:+60938400 | MS.gene20913:CDS |
| ACTTGTAATCGTTGCGTTGA+AGG | 0.491089 | 1.3:+60937253 | MS.gene20913:CDS |
| ATGTGACAGTTTGTAGGCAT+GGG | 0.494330 | 1.3:+60935628 | MS.gene20913:intron |
| TGTGAACAGCTCATCATTGA+AGG | 0.494729 | 1.3:+60937566 | MS.gene20913:intron |
| GGGTGGAAAAGAAGTTGCTT+AGG | 0.494730 | 1.3:+60936936 | MS.gene20913:CDS |
| CATTGCCAGAATATAGTCAT+AGG | 0.496409 | 1.3:-60938101 | None:intergenic |
| GGATAAGAGGGGAATAGAAA+AGG | 0.502714 | 1.3:+60937625 | MS.gene20913:CDS |
| GTCAACTTTACGAGTTTCCA+AGG | 0.513589 | 1.3:-60938417 | None:intergenic |
| GAAAGAAATATTGGCAATGA+GGG | 0.516190 | 1.3:+60938567 | MS.gene20913:CDS |
| TTTGTTTCATAAAGGGGATG+AGG | 0.518890 | 1.3:+60938077 | MS.gene20913:intron |
| CTTGTAATCGTTGCGTTGAA+GGG | 0.519111 | 1.3:+60937254 | MS.gene20913:CDS |
| ATGGTGGCAAGAAGTCCTCT+TGG | 0.521474 | 1.3:-60937677 | None:intergenic |
| CAGGTGCTTTGTGGATAAGA+GGG | 0.525174 | 1.3:+60937613 | MS.gene20913:CDS |
| ACTTTCCTCGGACTCTTCCT+CGG | 0.525401 | 1.3:+60935682 | MS.gene20913:CDS |
| TGAAACACATATTTCCAGGC+AGG | 0.526662 | 1.3:+60938773 | MS.gene20913:CDS |
| ACGCGGACCATTGACGAATG+TGG | 0.527722 | 1.3:+60938545 | MS.gene20913:CDS |
| TACTTGCAGCTGAGAAAGCA+AGG | 0.530537 | 1.3:+60938454 | MS.gene20913:CDS |
| GAAGTTAGCAGGTGTGTCTA+GGG | 0.530558 | 1.3:+60938746 | MS.gene20913:CDS |
| ACTTGTGCACTCGTCTTCAA+CGG | 0.546561 | 1.3:-60936986 | None:intergenic |
| ACAAATGGAAATGGGAGAAG+AGG | 0.548200 | 1.3:-60937013 | None:intergenic |
| CAATGCTGTCATCTGATGAA+AGG | 0.552272 | 1.3:-60938171 | None:intergenic |
| GTTGAAGACGAGTGCACAAG+TGG | 0.554243 | 1.3:+60936988 | MS.gene20913:CDS |
| ACACTATGAGACGCCATGGT+TGG | 0.555301 | 1.3:+60935499 | None:intergenic |
| AATGTGACAGTTTGTAGGCA+TGG | 0.560320 | 1.3:+60935627 | MS.gene20913:intron |
| ATCAAATGACTCCAATTCCA+TGG | 0.560589 | 1.3:-60938140 | None:intergenic |
| CAGCTGAGAAAGCAAGGGAA+AGG | 0.566987 | 1.3:+60938460 | MS.gene20913:CDS |
| GAATAGATAAATTACCATGA+AGG | 0.567650 | 1.3:-60935743 | None:intergenic |
| GGAAAGAAATATTGGCAATG+AGG | 0.572865 | 1.3:+60938566 | MS.gene20913:CDS |
| TTAGTGTTATCTCAGCAGTT+CGG | 0.574132 | 1.3:-60935708 | None:intergenic |
| TTTACCTGTAAAGGATGAAG+AGG | 0.576281 | 1.3:-60935528 | None:intergenic |
| GAGAGAAGAGAATGAAGCCA+TGG | 0.580808 | 1.3:+60938123 | MS.gene20913:CDS |
| TGTCGTCCCTGATCTTAAAG+AGG | 0.582192 | 1.3:+60937057 | MS.gene20913:CDS |
| TTTGTGTTGATCAAAGGGGA+AGG | 0.592051 | 1.3:-60938372 | None:intergenic |
| CGTGCGAGAAAGACCAATGA+GGG | 0.592418 | 1.3:+60938485 | MS.gene20913:CDS |
| AAAAGCCAACACTAATGTCA+AGG | 0.594065 | 1.3:+60938209 | MS.gene20913:CDS |
| TCACGTTCTCCTAATACGAA+AGG | 0.596273 | 1.3:+60937872 | MS.gene20913:CDS |
| AAGTATAGAAACACACCACC+AGG | 0.598487 | 1.3:-60935663 | None:intergenic |
| AACAGATACTGACCCTGCAA+TGG | 0.599614 | 1.3:-60937285 | None:intergenic |
| AGGGTTTGATCACCATTGCA+GGG | 0.600426 | 1.3:+60937273 | MS.gene20913:CDS |
| ATACAATGCCTACGATCTTG+GGG | 0.601194 | 1.3:-60938835 | None:intergenic |
| TGTCGTCCTCTTTAAGATCA+GGG | 0.605943 | 1.3:-60937063 | None:intergenic |
| AATGCCTACGATCTTGGGGA+TGG | 0.606261 | 1.3:-60938831 | None:intergenic |
| ATTCATTATTGGTCAGATTG+TGG | 0.609221 | 1.3:+60936898 | MS.gene20913:CDS |
| GAACAGCTCATCATTGAAGG+AGG | 0.626679 | 1.3:+60937569 | MS.gene20913:intron |
| AACAGCTCATCATTGAAGGA+GGG | 0.627474 | 1.3:+60937570 | MS.gene20913:intron |
| GAAGAGGACGTTGCCAACCA+TGG | 0.631280 | 1.3:-60935512 | None:intergenic |
| GATGACTATTACACATATGG+TGG | 0.631412 | 1.3:-60937693 | None:intergenic |
| TGAACCATCCCCAAGATCGT+AGG | 0.633327 | 1.3:+60938827 | MS.gene20913:CDS |
| TGTGACAGTTTGTAGGCATG+GGG | 0.633700 | 1.3:+60935629 | MS.gene20913:intron |
| TCTCAGCAGTTCGGTTTCCG+AGG | 0.633761 | 1.3:-60935699 | None:intergenic |
| CTTATAGTTCAGCTGCATTG+GGG | 0.635397 | 1.3:+60937835 | MS.gene20913:CDS |
| ACTTGCAGCTGAGAAAGCAA+GGG | 0.638549 | 1.3:+60938455 | MS.gene20913:CDS |
| TCAACTTTACGAGTTTCCAA+GGG | 0.643170 | 1.3:-60938416 | None:intergenic |
| ATAGACACTATGAGACGCCA+TGG | 0.643914 | 1.3:+60935495 | None:intergenic |
| GGGGATTTATAGTTTCCTGG+TGG | 0.645721 | 1.3:+60935648 | MS.gene20913:CDS |
| TACCATGAAGGAAAATATGG+AGG | 0.650461 | 1.3:-60935731 | None:intergenic |
| GGTTTCCGAGGAAGAGTCCG+AGG | 0.657144 | 1.3:-60935687 | None:intergenic |
| TCGTGCGAGAAAGACCAATG+AGG | 0.674025 | 1.3:+60938484 | MS.gene20913:CDS |
| TCAATCTTGATAGACAACCT+AGG | 0.679060 | 1.3:-60938336 | None:intergenic |
| AGGTGCTTTGTGGATAAGAG+GGG | 0.684044 | 1.3:+60937614 | MS.gene20913:CDS |
| CTTCCATTGGAGACAAAACG+CGG | 0.706884 | 1.3:+60938528 | MS.gene20913:CDS |
| ATGCTGCTAGAGAATACCGA+TGG | 0.739752 | 1.3:-60938681 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATATTTTTTTTTTCAAAAA+TGG | + | chr1.3:60935809-60935828 | MS.gene20913:intron | 10.0% |
| !!! | CATTTTTGAAAAAAAAAATA+TGG | - | chr1.3:60935811-60935830 | None:intergenic | 10.0% |
| !! | AACTAAAATGAAAAATAGAA+AGG | - | chr1.3:60935562-60935581 | None:intergenic | 15.0% |
| !! | AAGATAATTTAAGCAAAAAA+GGG | - | chr1.3:60936382-60936401 | None:intergenic | 15.0% |
| !! | CCTTTATAAAGTTTAAAAAA+TGG | + | chr1.3:60936572-60936591 | MS.gene20913:intron | 15.0% |
| !!! | CCATTTTTTAAACTTTATAA+AGG | - | chr1.3:60936575-60936594 | None:intergenic | 15.0% |
| !!! | TTACTAAAGAAATATTTTGA+TGG | - | chr1.3:60936480-60936499 | None:intergenic | 15.0% |
| !!! | TTTTTTGCTTAAATTATCTT+CGG | + | chr1.3:60936382-60936401 | MS.gene20913:intron | 15.0% |
| !! | AAAATGCTTATTTACTAGTT+TGG | - | chr1.3:60936433-60936452 | None:intergenic | 20.0% |
| !! | AATGAATTCAATTTAGGTAA+CGG | + | chr1.3:60936012-60936031 | MS.gene20913:intron | 20.0% |
| !! | AGATAATTTAAGCAAAAAAG+GGG | - | chr1.3:60936381-60936400 | None:intergenic | 20.0% |
| !! | CAGAATTAATGTTAAATAGA+AGG | - | chr1.3:60937763-60937782 | None:intergenic | 20.0% |
| !! | GAAGATAATTTAAGCAAAAA+AGG | - | chr1.3:60936383-60936402 | None:intergenic | 20.0% |
| !! | GTCAATATTATATCGTTTAT+CGG | - | chr1.3:60936515-60936534 | None:intergenic | 20.0% |
| !!! | TATTGACTTAAATAGTCTTT+CGG | + | chr1.3:60936528-60936547 | MS.gene20913:intron | 20.0% |
| !!! | TGTTTGATTTGTTTCATAAA+GGG | + | chr1.3:60938070-60938089 | MS.gene20913:intron | 20.0% |
| !!! | TTGTTTGATTTGTTTCATAA+AGG | + | chr1.3:60938069-60938088 | MS.gene20913:intron | 20.0% |
| !!! | TTTTTTTTTAATCTTAAGCG+TGG | + | chr1.3:60937156-60937175 | MS.gene20913:intron | 20.0% |
| ! | AAGTAACATTAATGCTTCAT+TGG | + | chr1.3:60936150-60936169 | MS.gene20913:intron | 25.0% |
| ! | AATTACCATGAAGGAAAATA+TGG | - | chr1.3:60935737-60935756 | None:intergenic | 25.0% |
| ! | CTTAACTATGGATTCATTAT+TGG | + | chr1.3:60936887-60936906 | MS.gene20913:CDS | 25.0% |
| ! | CTTTCATAACAAATGGAAAT+GGG | - | chr1.3:60937024-60937043 | None:intergenic | 25.0% |
| ! | GAATAGATAAATTACCATGA+AGG | - | chr1.3:60935746-60935765 | None:intergenic | 25.0% |
| ! | GCAATGAATGAATTCAATTT+AGG | + | chr1.3:60936006-60936025 | MS.gene20913:intron | 25.0% |
| ! | TCATCATCTTTCATAACAAA+TGG | - | chr1.3:60937031-60937050 | None:intergenic | 25.0% |
| ! | TCTTTCATAACAAATGGAAA+TGG | - | chr1.3:60937025-60937044 | None:intergenic | 25.0% |
| !!! | ATAATTTTGTTGTTTTGCAC+AGG | + | chr1.3:60936757-60936776 | MS.gene20913:intron | 25.0% |
| !!! | CTAAAGAAATATTTTGATGG+AGG | - | chr1.3:60936477-60936496 | None:intergenic | 25.0% |
| !!! | GTTTGATTTGTTTCATAAAG+GGG | + | chr1.3:60938071-60938090 | MS.gene20913:intron | 25.0% |
| AAAATCCTTGACATTAGTGT+TGG | - | chr1.3:60938217-60938236 | None:intergenic | 30.0% | |
| AACTTCATGTATCACCATTA+AGG | + | chr1.3:60938622-60938641 | MS.gene20913:CDS | 30.0% | |
| AATAGAAGGTTCAAAAGTCA+AGG | - | chr1.3:60937749-60937768 | None:intergenic | 30.0% | |
| AATGAGAACTAACCATTAAC+AGG | - | chr1.3:60937453-60937472 | None:intergenic | 30.0% | |
| AATTGTTATCAATGTGTGTC+TGG | + | chr1.3:60936699-60936718 | MS.gene20913:intron | 30.0% | |
| ACGAATGTGGAAAGAAATAT+TGG | + | chr1.3:60938558-60938577 | MS.gene20913:CDS | 30.0% | |
| ACTCTGTTTATATGTGAATC+AGG | + | chr1.3:60937204-60937223 | MS.gene20913:intron | 30.0% | |
| AGAAGAAGAAAAAAGCCAAA+AGG | + | chr1.3:60936849-60936868 | MS.gene20913:CDS | 30.0% | |
| AGTGGTTGAATAACTGTATT+GGG | + | chr1.3:60937386-60937405 | MS.gene20913:intron | 30.0% | |
| ATAGAAGGTTCAAAAGTCAA+GGG | - | chr1.3:60937748-60937767 | None:intergenic | 30.0% | |
| ATAGTCATCTGAATTGTTTC+TGG | + | chr1.3:60937707-60937726 | MS.gene20913:intron | 30.0% | |
| ATGAATCCATAGTTAAGCTT+AGG | - | chr1.3:60936884-60936903 | None:intergenic | 30.0% | |
| ATTCATTATTGGTCAGATTG+TGG | + | chr1.3:60936898-60936917 | MS.gene20913:CDS | 30.0% | |
| ATTGAATTCATTCATTGCAC+TGG | - | chr1.3:60936004-60936023 | None:intergenic | 30.0% | |
| GAAAGAAATATTGGCAATGA+GGG | + | chr1.3:60938567-60938586 | MS.gene20913:CDS | 30.0% | |
| GACTGAATTGATATTTCTCA+AGG | + | chr1.3:60936626-60936645 | MS.gene20913:intron | 30.0% | |
| TAAACATGAGATTAAGCACA+AGG | + | chr1.3:60935844-60935863 | MS.gene20913:intron | 30.0% | |
| TCAGATGACTATTACACATA+TGG | - | chr1.3:60937699-60937718 | None:intergenic | 30.0% | |
| TGAAACGCGACATATAATTT+GGG | + | chr1.3:60936176-60936195 | MS.gene20913:intron | 30.0% | |
| TTGAAAATGTGACAGTTTGT+AGG | + | chr1.3:60935622-60935641 | MS.gene20913:intron | 30.0% | |
| TTGAAACGCGACATATAATT+TGG | + | chr1.3:60936175-60936194 | MS.gene20913:intron | 30.0% | |
| TTTCTTCTTCTTCTTGAAAC+TGG | - | chr1.3:60936840-60936859 | None:intergenic | 30.0% | |
| ! | AACACCTTTTATAGCAAAAG+GGG | + | chr1.3:60938599-60938618 | MS.gene20913:CDS | 30.0% |
| ! | ATCAACTGTTTTCAGTTTCA+AGG | + | chr1.3:60936331-60936350 | MS.gene20913:intron | 30.0% |
| ! | ATGCTTATTTACTAGTTTGG+AGG | - | chr1.3:60936430-60936449 | None:intergenic | 30.0% |
| ! | ATGTCAAGGATTTTATGCAA+AGG | + | chr1.3:60938223-60938242 | MS.gene20913:CDS | 30.0% |
| ! | CAACACCTTTTATAGCAAAA+GGG | + | chr1.3:60938598-60938617 | MS.gene20913:CDS | 30.0% |
| ! | TAGTCATCTGAATTGTTTCT+GGG | + | chr1.3:60937708-60937727 | MS.gene20913:intron | 30.0% |
| ! | TCAACACCTTTTATAGCAAA+AGG | + | chr1.3:60938597-60938616 | MS.gene20913:CDS | 30.0% |
| ! | TCCAAAGCGACATATATTTT+GGG | + | chr1.3:60936212-60936231 | MS.gene20913:intron | 30.0% |
| ! | TGGTTTGAGTCAATTTTCAT+AGG | - | chr1.3:60935967-60935986 | None:intergenic | 30.0% |
| ! | TTCCAAAGCGACATATATTT+TGG | + | chr1.3:60936211-60936230 | MS.gene20913:intron | 30.0% |
| !! | AACCTTTTTGTGTTGATCAA+AGG | - | chr1.3:60938381-60938400 | None:intergenic | 30.0% |
| !! | AATTTAGGTAACGGAAATGA+GGG | + | chr1.3:60936021-60936040 | MS.gene20913:intron | 30.0% |
| !! | ACCTTTTTGTGTTGATCAAA+GGG | - | chr1.3:60938380-60938399 | None:intergenic | 30.0% |
| !! | CAGTTATGTTTTTGTTTGTG+AGG | + | chr1.3:60936786-60936805 | MS.gene20913:CDS | 30.0% |
| !! | GATGATGTTTTTACCTGTAA+AGG | - | chr1.3:60935540-60935559 | None:intergenic | 30.0% |
| !!! | CTGCTTCTATATTTGTTTTG+TGG | - | chr1.3:60938717-60938736 | None:intergenic | 30.0% |
| !!! | TTTGGAGGCTTTTTCAAAAT+AGG | - | chr1.3:60936415-60936434 | None:intergenic | 30.0% |
| !!! | TTTTCTTCTCTTGTTTTCAG+TGG | + | chr1.3:60937368-60937387 | MS.gene20913:intron | 30.0% |
| AAAAGCCAACACTAATGTCA+AGG | + | chr1.3:60938209-60938228 | MS.gene20913:CDS | 35.0% | |
| AAACACAGTGTACCTTTGAT+CGG | - | chr1.3:60935931-60935950 | None:intergenic | 35.0% | |
| AATATTGGCAATGAGGGATT+TGG | + | chr1.3:60938573-60938592 | MS.gene20913:CDS | 35.0% | |
| AGAACTGCACAGAAAATCAA+AGG | - | chr1.3:60938032-60938051 | None:intergenic | 35.0% | |
| AGAGAACTACCTTTCGTATT+AGG | - | chr1.3:60937884-60937903 | None:intergenic | 35.0% | |
| AGCTTGAAACACATATTTCC+AGG | + | chr1.3:60938769-60938788 | MS.gene20913:CDS | 35.0% | |
| ATATTGGCAATGAGGGATTT+GGG | + | chr1.3:60938574-60938593 | MS.gene20913:CDS | 35.0% | |
| ATCAAATGACTCCAATTCCA+TGG | - | chr1.3:60938143-60938162 | None:intergenic | 35.0% | |
| CACTGGATTGTACTTTGAAT+TGG | - | chr1.3:60935987-60936006 | None:intergenic | 35.0% | |
| CAGTGGTTGAATAACTGTAT+TGG | + | chr1.3:60937385-60937404 | MS.gene20913:intron | 35.0% | |
| CATTGCCAGAATATAGTCAT+AGG | - | chr1.3:60938104-60938123 | None:intergenic | 35.0% | |
| CTGCAATTGCGATATTTATC+AGG | + | chr1.3:60937594-60937613 | MS.gene20913:CDS | 35.0% | |
| GAATAGAAAAGGAGCTTCAT+AGG | + | chr1.3:60937636-60937655 | MS.gene20913:CDS | 35.0% | |
| GATATTTATCAGGTGCTTTG+TGG | + | chr1.3:60937604-60937623 | MS.gene20913:CDS | 35.0% | |
| GATGACTATTACACATATGG+TGG | - | chr1.3:60937696-60937715 | None:intergenic | 35.0% | |
| GCAATTCCTAAGCTTAACTA+TGG | + | chr1.3:60936875-60936894 | MS.gene20913:CDS | 35.0% | |
| GGAAAGAAATATTGGCAATG+AGG | + | chr1.3:60938566-60938585 | MS.gene20913:CDS | 35.0% | |
| GGAGGAACTAAATTGATTAC+AGG | - | chr1.3:60936459-60936478 | None:intergenic | 35.0% | |
| TACCATGAAGGAAAATATGG+AGG | - | chr1.3:60935734-60935753 | None:intergenic | 35.0% | |
| TATACTATCAAGCACACACT+CGG | - | chr1.3:60936728-60936747 | None:intergenic | 35.0% | |
| TCAAAACAAGCTTCTCTGTA+AGG | - | chr1.3:60938302-60938321 | None:intergenic | 35.0% | |
| TCAACTTTACGAGTTTCCAA+GGG | - | chr1.3:60938419-60938438 | None:intergenic | 35.0% | |
| TCAATCTTGATAGACAACCT+AGG | - | chr1.3:60938339-60938358 | None:intergenic | 35.0% | |
| TGTTCAGTTATCAGCAAAGA+TGG | + | chr1.3:60938801-60938820 | MS.gene20913:CDS | 35.0% | |
| TTAGTGTTATCTCAGCAGTT+CGG | - | chr1.3:60935711-60935730 | None:intergenic | 35.0% | |
| TTCATTAAGACCTCTTCCAT+TGG | + | chr1.3:60938515-60938534 | MS.gene20913:CDS | 35.0% | |
| TTTACCTGTAAAGGATGAAG+AGG | - | chr1.3:60935531-60935550 | None:intergenic | 35.0% | |
| TTTCTTTCCACATTCGTCAA+TGG | - | chr1.3:60938555-60938574 | None:intergenic | 35.0% | |
| TTTGTTTCATAAAGGGGATG+AGG | + | chr1.3:60938077-60938096 | MS.gene20913:intron | 35.0% | |
| ! | AACCTCCATATTTTCCTTCA+TGG | + | chr1.3:60935729-60935748 | MS.gene20913:CDS | 35.0% |
| ! | AAGGATTTTATGCAAAGGAC+AGG | + | chr1.3:60938228-60938247 | MS.gene20913:CDS | 35.0% |
| ! | AGATTGTGGTGAGATTTTTC+AGG | + | chr1.3:60936912-60936931 | MS.gene20913:CDS | 35.0% |
| ! | AGCATCTTAAGTTGTTATGC+TGG | - | chr1.3:60936294-60936313 | None:intergenic | 35.0% |
| ! | ATCTGTTACTGTTAGGCTTT+TGG | + | chr1.3:60937301-60937320 | MS.gene20913:intron | 35.0% |
| ! | CTTAGGAATTGCATTCCTTT+TGG | - | chr1.3:60936867-60936886 | None:intergenic | 35.0% |
| ! | CTTTTTGTAGAGTTTCCAAG+AGG | + | chr1.3:60937662-60937681 | MS.gene20913:CDS | 35.0% |
| ! | GAAACTGAAAACAGTTGATG+CGG | - | chr1.3:60936330-60936349 | None:intergenic | 35.0% |
| ! | GATGATTTTCGTCCTGTTAA+TGG | + | chr1.3:60937438-60937457 | MS.gene20913:CDS | 35.0% |
| ! | GTGTGTTTCTATACTTTCCT+CGG | + | chr1.3:60935670-60935689 | MS.gene20913:CDS | 35.0% |
| ! | TAAGGTTTGAGACAGAATGA+AGG | - | chr1.3:60938284-60938303 | None:intergenic | 35.0% |
| ! | TCCCAAAATATATGTCGCTT+TGG | - | chr1.3:60936216-60936235 | None:intergenic | 35.0% |
| ! | TTGCACACTTTGTGATTTTG+AGG | + | chr1.3:60937093-60937112 | MS.gene20913:CDS | 35.0% |
| !! | AAGCGACATATATTTTGGGA+CGG | + | chr1.3:60936216-60936235 | MS.gene20913:intron | 35.0% |
| !! | AAGTTGTTATGCTGGTTTAG+AGG | - | chr1.3:60936286-60936305 | None:intergenic | 35.0% |
| !! | AGTTCCCCTTTTGCTATAAA+AGG | - | chr1.3:60938606-60938625 | None:intergenic | 35.0% |
| !! | AGTTGTTATGCTGGTTTAGA+GGG | - | chr1.3:60936285-60936304 | None:intergenic | 35.0% |
| !! | ATTTAGGTAACGGAAATGAG+GGG | + | chr1.3:60936022-60936041 | MS.gene20913:intron | 35.0% |
| !! | CAATTTAGGTAACGGAAATG+AGG | + | chr1.3:60936020-60936039 | MS.gene20913:intron | 35.0% |
| !! | CCTTTTTGTGTTGATCAAAG+GGG | - | chr1.3:60938379-60938398 | None:intergenic | 35.0% |
| !! | GTTTTTGTTTGTGAGGTGTA+CGG | + | chr1.3:60936793-60936812 | MS.gene20913:CDS | 35.0% |
| !!! | AGTTTTGACTTGAAGTTAGC+AGG | + | chr1.3:60938735-60938754 | MS.gene20913:CDS | 35.0% |
| AACAGCTCATCATTGAAGGA+GGG | + | chr1.3:60937570-60937589 | MS.gene20913:intron | 40.0% | |
| AAGTATAGAAACACACCACC+AGG | - | chr1.3:60935666-60935685 | None:intergenic | 40.0% | |
| AATGTGACAGTTTGTAGGCA+TGG | + | chr1.3:60935627-60935646 | MS.gene20913:intron | 40.0% | |
| AATGTTACAGCACCAATAGC+AGG | - | chr1.3:60936114-60936133 | None:intergenic | 40.0% | |
| ACAAATGGAAATGGGAGAAG+AGG | - | chr1.3:60937016-60937035 | None:intergenic | 40.0% | |
| ACTTGTAATCGTTGCGTTGA+AGG | + | chr1.3:60937253-60937272 | MS.gene20913:CDS | 40.0% | |
| AGAGAATGAAGCCATGGAAT+TGG | + | chr1.3:60938129-60938148 | MS.gene20913:CDS | 40.0% | |
| AGCTTATAGTTCAGCTGCAT+TGG | + | chr1.3:60937833-60937852 | MS.gene20913:CDS | 40.0% | |
| ATCTGTGCTAAACCGATCAA+AGG | + | chr1.3:60935916-60935935 | MS.gene20913:intron | 40.0% | |
| ATGTGACAGTTTGTAGGCAT+GGG | + | chr1.3:60935628-60935647 | MS.gene20913:intron | 40.0% | |
| ATGTTACAGCACCAATAGCA+GGG | - | chr1.3:60936113-60936132 | None:intergenic | 40.0% | |
| CAATGCTGTCATCTGATGAA+AGG | - | chr1.3:60938174-60938193 | None:intergenic | 40.0% | |
| CATGGGGATTTATAGTTTCC+TGG | + | chr1.3:60935645-60935664 | MS.gene20913:CDS | 40.0% | |
| CCCCTTTGATCAACACAAAA+AGG | + | chr1.3:60938376-60938395 | MS.gene20913:CDS | 40.0% | |
| CCTGCAGAAAATCTTCTTCT+TGG | - | chr1.3:60938657-60938676 | None:intergenic | 40.0% | |
| CTTATAGTTCAGCTGCATTG+GGG | + | chr1.3:60937835-60937854 | MS.gene20913:CDS | 40.0% | |
| CTTGGACTTGAAAGCCTTAA+TGG | - | chr1.3:60938639-60938658 | None:intergenic | 40.0% | |
| CTTGTAATCGTTGCGTTGAA+GGG | + | chr1.3:60937254-60937273 | MS.gene20913:CDS | 40.0% | |
| GAGGACCTATGACTATATTC+TGG | + | chr1.3:60938096-60938115 | MS.gene20913:CDS | 40.0% | |
| GCTTATAGTTCAGCTGCATT+GGG | + | chr1.3:60937834-60937853 | MS.gene20913:CDS | 40.0% | |
| GGATAAGAGGGGAATAGAAA+AGG | + | chr1.3:60937625-60937644 | MS.gene20913:CDS | 40.0% | |
| GGTAGTTCTCTTTCTTGCTT+TGG | + | chr1.3:60937893-60937912 | MS.gene20913:intron | 40.0% | |
| GGTCAGTATCTGTTACTGTT+AGG | + | chr1.3:60937294-60937313 | MS.gene20913:intron | 40.0% | |
| GTCAACTTTACGAGTTTCCA+AGG | - | chr1.3:60938420-60938439 | None:intergenic | 40.0% | |
| GTTCACATAACACATGGTGT+TGG | - | chr1.3:60937553-60937572 | None:intergenic | 40.0% | |
| TCACGTTCTCCTAATACGAA+AGG | + | chr1.3:60937872-60937891 | MS.gene20913:CDS | 40.0% | |
| TGAAACACATATTTCCAGGC+AGG | + | chr1.3:60938773-60938792 | MS.gene20913:CDS | 40.0% | |
| TGAACTTCATGAAATGCTGC+AGG | + | chr1.3:60937791-60937810 | MS.gene20913:intron | 40.0% | |
| TGAGCTGTTCACATAACACA+TGG | - | chr1.3:60937559-60937578 | None:intergenic | 40.0% | |
| TGTGAACAGCTCATCATTGA+AGG | + | chr1.3:60937566-60937585 | MS.gene20913:intron | 40.0% | |
| TTCACGTAAGCATTAACCCT+TGG | + | chr1.3:60938400-60938419 | MS.gene20913:CDS | 40.0% | |
| ! | CCAAGAAGAAGATTTTCTGC+AGG | + | chr1.3:60938654-60938673 | MS.gene20913:CDS | 40.0% |
| ! | GACAGAATGAAGGCATAAAG+CGG | - | chr1.3:60938274-60938293 | None:intergenic | 40.0% |
| ! | GATCAAAGGTACACTGTGTT+TGG | + | chr1.3:60935930-60935949 | MS.gene20913:intron | 40.0% |
| ! | TTTGTGTTGATCAAAGGGGA+AGG | - | chr1.3:60938375-60938394 | None:intergenic | 40.0% |
| !! | AAAGGAGCATTTCTGAGATG+GGG | - | chr1.3:60936090-60936109 | None:intergenic | 40.0% |
| !! | ACATGGTGTTGGAAACGTTT+TGG | - | chr1.3:60937542-60937561 | None:intergenic | 40.0% |
| !! | ATGTCGTCCTCTTTAAGATC+AGG | - | chr1.3:60937067-60937086 | None:intergenic | 40.0% |
| !! | GAAAGGAGCATTTCTGAGAT+GGG | - | chr1.3:60936091-60936110 | None:intergenic | 40.0% |
| !! | GTTGTTATGCTGGTTTAGAG+GGG | - | chr1.3:60936284-60936303 | None:intergenic | 40.0% |
| !! | TGCAAGTAGAGCTTTTTCTC+TGG | - | chr1.3:60938442-60938461 | None:intergenic | 40.0% |
| !! | TGTCGTCCTCTTTAAGATCA+GGG | - | chr1.3:60937066-60937085 | None:intergenic | 40.0% |
| !! | TTGAAACTGGTTCTGTCTGT+AGG | - | chr1.3:60936827-60936846 | None:intergenic | 40.0% |
| !! | TTTAGGTAACGGAAATGAGG+GGG | + | chr1.3:60936023-60936042 | MS.gene20913:intron | 40.0% |
| !!! | GACATATATTTTGGGACGGA+GGG | + | chr1.3:60936220-60936239 | MS.gene20913:intron | 40.0% |
| !!! | GACATTAGTGTTGGCTTTTC+AGG | - | chr1.3:60938208-60938227 | None:intergenic | 40.0% |
| !!! | TGTGGTGAGATTTTTCAGGA+GGG | + | chr1.3:60936916-60936935 | MS.gene20913:CDS | 40.0% |
| !!! | TTGTGGTGAGATTTTTCAGG+AGG | + | chr1.3:60936915-60936934 | MS.gene20913:CDS | 40.0% |
| AACAGATACTGACCCTGCAA+TGG | - | chr1.3:60937288-60937307 | None:intergenic | 45.0% | |
| AACTGAACATAGAACCTGCC+TGG | - | chr1.3:60938790-60938809 | None:intergenic | 45.0% | |
| AAGGGTTTGATCACCATTGC+AGG | + | chr1.3:60937272-60937291 | MS.gene20913:CDS | 45.0% | |
| AATGAACTGTGCTCCCTCAT+TGG | - | chr1.3:60938501-60938520 | None:intergenic | 45.0% | |
| AATGCTCCTTTCCCTGCTAT+TGG | + | chr1.3:60936099-60936118 | MS.gene20913:intron | 45.0% | |
| ACGTCCTCTTCATCCTTTAC+AGG | + | chr1.3:60935524-60935543 | MS.gene20913:CDS | 45.0% | |
| ACTTGCAGCTGAGAAAGCAA+GGG | + | chr1.3:60938455-60938474 | MS.gene20913:CDS | 45.0% | |
| ACTTGTGCACTCGTCTTCAA+CGG | - | chr1.3:60936989-60937008 | None:intergenic | 45.0% | |
| AGGGTTTGATCACCATTGCA+GGG | + | chr1.3:60937273-60937292 | MS.gene20913:CDS | 45.0% | |
| AGGTGCTTTGTGGATAAGAG+GGG | + | chr1.3:60937614-60937633 | MS.gene20913:CDS | 45.0% | |
| ATGCTGCTAGAGAATACCGA+TGG | - | chr1.3:60938684-60938703 | None:intergenic | 45.0% | |
| CAGGTGCTTTGTGGATAAGA+GGG | + | chr1.3:60937613-60937632 | MS.gene20913:CDS | 45.0% | |
| CTGCACAGAAAATCAAAGGC+TGG | - | chr1.3:60938028-60938047 | None:intergenic | 45.0% | |
| CTTCCATTGGAGACAAAACG+CGG | + | chr1.3:60938528-60938547 | MS.gene20913:CDS | 45.0% | |
| GAACAGCTCATCATTGAAGG+AGG | + | chr1.3:60937569-60937588 | MS.gene20913:intron | 45.0% | |
| GAAGTTAGCAGGTGTGTCTA+GGG | + | chr1.3:60938746-60938765 | MS.gene20913:CDS | 45.0% | |
| GAGAGAAGAGAATGAAGCCA+TGG | + | chr1.3:60938123-60938142 | MS.gene20913:CDS | 45.0% | |
| GGGGATTTATAGTTTCCTGG+TGG | + | chr1.3:60935648-60935667 | MS.gene20913:CDS | 45.0% | |
| GGGTGGAAAAGAAGTTGCTT+AGG | + | chr1.3:60936936-60936955 | MS.gene20913:CDS | 45.0% | |
| TACTTGCAGCTGAGAAAGCA+AGG | + | chr1.3:60938454-60938473 | MS.gene20913:CDS | 45.0% | |
| TCAGGTGCTTTGTGGATAAG+AGG | + | chr1.3:60937612-60937631 | MS.gene20913:CDS | 45.0% | |
| TGAAGTTAGCAGGTGTGTCT+AGG | + | chr1.3:60938745-60938764 | MS.gene20913:CDS | 45.0% | |
| TGTCGTCCCTGATCTTAAAG+AGG | + | chr1.3:60937057-60937076 | MS.gene20913:CDS | 45.0% | |
| TGTGACAGTTTGTAGGCATG+GGG | + | chr1.3:60935629-60935648 | MS.gene20913:intron | 45.0% | |
| ! | AATCAAAGGCTGGAGCACTT+TGG | - | chr1.3:60938018-60938037 | None:intergenic | 45.0% |
| ! | ACTGAAAACAGTTGATGCGG+TGG | - | chr1.3:60936327-60936346 | None:intergenic | 45.0% |
| ! | ATTTTCTGCAGGCACACCAT+CGG | + | chr1.3:60938665-60938684 | MS.gene20913:CDS | 45.0% |
| ! | CGTTTTGTCTCCAATGGAAG+AGG | - | chr1.3:60938528-60938547 | None:intergenic | 45.0% |
| ! | TGAGTTTTCAGAGCTCACCT+AGG | + | chr1.3:60938319-60938338 | MS.gene20913:intron | 45.0% |
| !! | AAGGAGCATTTCTGAGATGG+GGG | - | chr1.3:60936089-60936108 | None:intergenic | 45.0% |
| !! | GGAAAGGAGCATTTCTGAGA+TGG | - | chr1.3:60936092-60936111 | None:intergenic | 45.0% |
| !!! | CGACATATATTTTGGGACGG+AGG | + | chr1.3:60936219-60936238 | MS.gene20913:intron | 45.0% |
| !!! | ATTATTATTTATTTTTGAAT+TGG | + | chr1.3:60935868-60935887 | MS.gene20913:intron | 5.0% |
| !!! | ATTGATATTTTTTTAATTTA+AGG | + | chr1.3:60936603-60936622 | MS.gene20913:intron | 5.0% |
| !!! | TTGATATTTTTTTAATTTAA+GGG | + | chr1.3:60936604-60936623 | MS.gene20913:intron | 5.0% |
| ACAGCACCAATAGCAGGGAA+AGG | - | chr1.3:60936108-60936127 | None:intergenic | 50.0% | |
| ACTTTCCTCGGACTCTTCCT+CGG | + | chr1.3:60935682-60935701 | MS.gene20913:CDS | 50.0% | |
| ATGGTGGCAAGAAGTCCTCT+TGG | - | chr1.3:60937680-60937699 | None:intergenic | 50.0% | |
| CACTCGTCTTCAACGGATCA+AGG | - | chr1.3:60936982-60937001 | None:intergenic | 50.0% | |
| CAGCTGAGAAAGCAAGGGAA+AGG | + | chr1.3:60938460-60938479 | MS.gene20913:CDS | 50.0% | |
| CGTGCGAGAAAGACCAATGA+GGG | + | chr1.3:60938485-60938504 | MS.gene20913:CDS | 50.0% | |
| GTTGAAGACGAGTGCACAAG+TGG | + | chr1.3:60936988-60937007 | MS.gene20913:CDS | 50.0% | |
| TCGTGCGAGAAAGACCAATG+AGG | + | chr1.3:60938484-60938503 | MS.gene20913:CDS | 50.0% | |
| ! | AACAGTTGATGCGGTGGCAT+TGG | - | chr1.3:60936321-60936340 | None:intergenic | 50.0% |
| ! | GCTGGTTTAGAGGGGTTATC+TGG | - | chr1.3:60936276-60936295 | None:intergenic | 50.0% |
| !! | AGGGAGTATCAGACTGCAGA+CGG | + | chr1.3:60936239-60936258 | MS.gene20913:intron | 50.0% |
| !!! | GGTGAGATTTTTCAGGAGGG+TGG | + | chr1.3:60936919-60936938 | MS.gene20913:CDS | 50.0% |
| ACGCGGACCATTGACGAATG+TGG | + | chr1.3:60938545-60938564 | MS.gene20913:CDS | 55.0% | |
| GAAGAGGACGTTGCCAACCA+TGG | - | chr1.3:60935515-60935534 | None:intergenic | 55.0% | |
| TCTCAGCAGTTCGGTTTCCG+AGG | - | chr1.3:60935702-60935721 | None:intergenic | 55.0% | |
| ! | GGTCCGCGTTTTGTCTCCAA+TGG | - | chr1.3:60938534-60938553 | None:intergenic | 55.0% |
| !! | AGCATTTCTGAGATGGGGGC+TGG | - | chr1.3:60936085-60936104 | None:intergenic | 55.0% |
| GGTTTCCGAGGAAGAGTCCG+AGG | - | chr1.3:60935690-60935709 | None:intergenic | 60.0% | |
| ! | GGGGCTGGTGCAATGTAGCT+CGG | + | chr1.3:60936042-60936061 | MS.gene20913:intron | 60.0% |
| !! | GGTAACGGAAATGAGGGGGC+TGG | + | chr1.3:60936027-60936046 | MS.gene20913:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 60935504 | 60938848 | 60935504 | ID=MS.gene20913 |
| chr1.3 | mRNA | 60935504 | 60938848 | 60935504 | ID=MS.gene20913.t1;Parent=MS.gene20913 |
| chr1.3 | exon | 60935504 | 60935545 | 60935504 | ID=MS.gene20913.t1.exon1;Parent=MS.gene20913.t1 |
| chr1.3 | CDS | 60935504 | 60935545 | 60935504 | ID=cds.MS.gene20913.t1;Parent=MS.gene20913.t1 |
| chr1.3 | exon | 60935637 | 60935750 | 60935637 | ID=MS.gene20913.t1.exon2;Parent=MS.gene20913.t1 |
| chr1.3 | CDS | 60935637 | 60935750 | 60935637 | ID=cds.MS.gene20913.t1;Parent=MS.gene20913.t1 |
| chr1.3 | exon | 60936779 | 60937114 | 60936779 | ID=MS.gene20913.t1.exon3;Parent=MS.gene20913.t1 |
| chr1.3 | CDS | 60936779 | 60937114 | 60936779 | ID=cds.MS.gene20913.t1;Parent=MS.gene20913.t1 |
| chr1.3 | exon | 60937226 | 60937294 | 60937226 | ID=MS.gene20913.t1.exon4;Parent=MS.gene20913.t1 |
| chr1.3 | CDS | 60937226 | 60937294 | 60937226 | ID=cds.MS.gene20913.t1;Parent=MS.gene20913.t1 |
| chr1.3 | exon | 60937388 | 60937459 | 60937388 | ID=MS.gene20913.t1.exon5;Parent=MS.gene20913.t1 |
| chr1.3 | CDS | 60937388 | 60937459 | 60937388 | ID=cds.MS.gene20913.t1;Parent=MS.gene20913.t1 |
| chr1.3 | exon | 60937575 | 60937703 | 60937575 | ID=MS.gene20913.t1.exon6;Parent=MS.gene20913.t1 |
| chr1.3 | CDS | 60937575 | 60937703 | 60937575 | ID=cds.MS.gene20913.t1;Parent=MS.gene20913.t1 |
| chr1.3 | exon | 60937813 | 60937893 | 60937813 | ID=MS.gene20913.t1.exon7;Parent=MS.gene20913.t1 |
| chr1.3 | CDS | 60937813 | 60937893 | 60937813 | ID=cds.MS.gene20913.t1;Parent=MS.gene20913.t1 |
| chr1.3 | exon | 60938091 | 60938249 | 60938091 | ID=MS.gene20913.t1.exon8;Parent=MS.gene20913.t1 |
| chr1.3 | CDS | 60938091 | 60938249 | 60938091 | ID=cds.MS.gene20913.t1;Parent=MS.gene20913.t1 |
| chr1.3 | exon | 60938330 | 60938848 | 60938330 | ID=MS.gene20913.t1.exon9;Parent=MS.gene20913.t1 |
| chr1.3 | CDS | 60938330 | 60938848 | 60938330 | ID=cds.MS.gene20913.t1;Parent=MS.gene20913.t1 |
| Gene Sequence |
| Protein sequence |
