AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20958


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20958.t1 MTR_1g085090 79.781 366 60 2 1 352 1 366 0.0 575
MS.gene20958.t1 MTR_1g085090 60.965 228 7 3 282 431 383 606 1.11e-75 247
MS.gene20958.t1 MTR_7g111260 66.393 366 109 3 1 352 1 366 3.52e-166 479
MS.gene20958.t1 MTR_7g111260 46.875 192 23 3 283 396 384 574 1.80e-37 144
MS.gene20958.t1 MTR_3g100980 39.237 367 199 4 11 355 10 374 4.79e-85 271
MS.gene20958.t1 MTR_4g123537 41.547 349 188 2 17 349 39 387 9.16e-82 263
MS.gene20958.t1 MTR_4g123537 36.628 172 31 3 283 376 408 579 1.28e-16 82.4
MS.gene20958.t1 MTR_3g100980 36.456 395 199 5 11 355 10 402 7.63e-79 255
MS.gene20958.t1 MTR_2g017750 36.964 303 168 6 3 283 8 309 6.07e-59 203
MS.gene20958.t1 MTR_8g087810 37.050 278 164 4 17 283 19 296 8.40e-59 202
MS.gene20958.t1 MTR_8g087780 36.237 287 166 5 14 283 10 296 6.26e-55 192
MS.gene20958.t1 MTR_3g112460 30.919 359 226 7 17 353 21 379 1.80e-53 187
MS.gene20958.t1 MTR_3g112470 31.198 359 225 7 17 353 21 379 4.24e-52 184
MS.gene20958.t1 MTR_3g112450 36.232 276 167 5 17 283 21 296 7.47e-52 183
MS.gene20958.t1 MTR_5g038380 40.586 239 139 2 17 252 26 264 8.84e-49 175
MS.gene20958.t1 MTR_5g055000 37.050 278 160 7 17 283 16 289 5.22e-48 173
MS.gene20958.t1 MTR_4g107670 36.546 249 146 4 11 253 18 260 9.56e-48 172
MS.gene20958.t1 MTR_4g015080 34.432 273 171 4 17 283 32 302 2.92e-46 168
MS.gene20958.t1 MTR_8g469310 38.912 239 143 1 17 252 24 262 3.51e-45 165
MS.gene20958.t1 MTR_7g067010 31.734 271 181 1 17 283 22 292 4.50e-44 162
MS.gene20958.t1 MTR_7g065080 32.601 273 175 3 17 283 29 298 4.50e-44 162
MS.gene20958.t1 MTR_7g051880 29.973 367 243 6 17 380 23 378 1.12e-43 160
MS.gene20958.t1 MTR_2g005130 33.704 270 167 4 18 283 39 300 3.27e-43 160
MS.gene20958.t1 MTR_3g462710 31.985 272 180 2 17 283 22 293 8.76e-43 158
MS.gene20958.t1 MTR_4g019580 34.191 272 172 4 17 283 34 303 1.44e-42 158
MS.gene20958.t1 MTR_5g012270 31.673 281 173 6 17 283 27 302 7.80e-42 156
MS.gene20958.t1 MTR_3g072300 32.069 290 183 5 3 283 10 294 9.22e-42 156
MS.gene20958.t1 MTR_7g052600 30.655 336 222 5 17 349 23 350 2.23e-41 154
MS.gene20958.t1 MTR_1g042310 29.630 270 183 3 3 267 12 279 3.24e-41 154
MS.gene20958.t1 MTR_7g051830 29.086 361 245 5 17 374 23 375 1.44e-40 152
MS.gene20958.t1 MTR_5g012290 32.624 282 170 6 17 283 25 301 1.48e-40 152
MS.gene20958.t1 MTR_4g101380 32.734 278 176 4 17 283 25 302 3.61e-40 151
MS.gene20958.t1 MTR_1g041815 29.720 286 190 4 3 283 13 292 3.72e-40 151
MS.gene20958.t1 MTR_3g069500 28.371 356 224 7 17 347 33 382 4.46e-40 151
MS.gene20958.t1 MTR_7g098040 29.562 274 179 3 3 267 20 288 4.73e-40 151
MS.gene20958.t1 MTR_1g041835 29.720 286 190 4 3 283 13 292 9.27e-40 150
MS.gene20958.t1 MTR_7g006540 32.975 279 173 4 19 283 63 341 2.44e-39 149
MS.gene20958.t1 MTR_1g116930 31.387 274 180 4 17 283 21 293 1.13e-38 147
MS.gene20958.t1 MTR_7g098180 28.082 292 191 4 3 280 17 303 1.18e-38 147
MS.gene20958.t1 MTR_7g098200 28.990 307 198 5 3 300 15 310 1.38e-38 147
MS.gene20958.t1 MTR_7g098090 27.931 290 191 4 3 283 19 299 2.33e-38 147
MS.gene20958.t1 MTR_7g098220 28.912 294 191 4 3 283 16 304 2.53e-38 146
MS.gene20958.t1 MTR_7g098150 27.241 290 193 4 3 283 19 299 2.77e-38 145
MS.gene20958.t1 MTR_7g098200 29.927 274 178 3 3 267 15 283 1.01e-37 144
MS.gene20958.t1 MTR_1g075440 27.368 285 200 3 3 282 14 296 1.29e-37 144
MS.gene20958.t1 MTR_7g098160 27.372 274 185 3 3 267 19 287 4.87e-37 143
MS.gene20958.t1 MTR_3g069440 28.696 345 223 6 17 340 31 373 4.92e-37 142
MS.gene20958.t1 MTR_7g088820 32.226 301 179 9 1 283 3 296 7.52e-37 142
MS.gene20958.t1 MTR_1g042310 29.958 237 161 2 36 267 6 242 1.88e-36 140
MS.gene20958.t1 MTR_1g042310 30.837 227 152 2 46 267 9 235 1.89e-36 140
MS.gene20958.t1 MTR_7g088825 32.374 278 173 8 17 283 20 293 3.13e-36 140
MS.gene20958.t1 MTR_7g010820 29.861 288 192 4 3 283 12 296 3.44e-36 140
MS.gene20958.t1 MTR_1g041875 27.941 272 187 3 17 283 27 294 4.98e-36 140
MS.gene20958.t1 MTR_3g069420 29.927 274 179 3 17 287 32 295 7.38e-36 139
MS.gene20958.t1 MTR_5g014150 30.464 302 198 4 3 300 30 323 8.68e-36 139
MS.gene20958.t1 MTR_4g098800 31.164 292 184 4 3 287 22 303 1.34e-35 139
MS.gene20958.t1 MTR_7g098230 28.467 274 179 4 23 283 31 300 2.07e-35 138
MS.gene20958.t1 MTR_4g098800 31.164 292 184 4 3 287 87 368 2.40e-35 138
MS.gene20958.t1 MTR_7g098220 29.502 261 168 3 36 283 3 260 5.32e-35 136
MS.gene20958.t1 MTR_1g041885 29.956 227 154 2 46 267 9 235 3.17e-34 134
MS.gene20958.t1 MTR_7g005930 30.909 275 179 5 18 283 34 306 4.14e-34 134
MS.gene20958.t1 MTR_7g088790 31.741 293 185 7 1 283 13 300 8.94e-34 134
MS.gene20958.t1 MTR_7g065080 33.178 214 134 3 76 283 1 211 3.89e-33 130
MS.gene20958.t1 MTR_2g101590 31.522 276 178 6 15 283 22 293 5.45e-33 131
MS.gene20958.t1 MTR_4g114340 33.704 270 174 3 17 283 22 289 2.48e-32 129
MS.gene20958.t1 MTR_4g107510 31.227 269 178 4 22 283 39 307 3.26e-32 129
MS.gene20958.t1 MTR_2g101610 31.597 288 186 6 3 283 11 294 3.57e-32 129
MS.gene20958.t1 MTR_1g026740 29.747 316 206 8 3 307 2 312 7.24e-32 127
MS.gene20958.t1 MTR_7g088820 32.759 232 149 4 59 283 3 234 4.04e-31 125
MS.gene20958.t1 MTR_4g107610 32.812 256 161 6 18 266 30 281 7.41e-31 125
MS.gene20958.t1 MTR_7g013270 29.603 277 182 6 18 283 89 363 1.56e-30 124
MS.gene20958.t1 MTR_2g101640 30.072 276 184 5 15 283 19 292 6.08e-30 122
MS.gene20958.t1 MTR_4g107580 29.151 271 182 5 22 283 27 296 6.43e-30 122
MS.gene20958.t1 MTR_4g011280 29.710 276 177 8 19 281 32 303 7.92e-30 122
MS.gene20958.t1 MTR_1g026750 31.228 285 183 7 6 283 5 283 2.13e-29 120
MS.gene20958.t1 MTR_5g085850 30.072 276 182 4 17 285 28 299 5.27e-29 119
MS.gene20958.t1 MTR_4g033395 30.709 254 165 4 3 254 18 262 1.31e-28 117
MS.gene20958.t1 MTR_4g107530 30.000 270 180 5 22 283 36 304 6.30e-28 116
MS.gene20958.t1 MTR_5g038060 28.826 281 184 5 17 283 29 307 5.78e-27 114
MS.gene20958.t1 MTR_4g033325 30.159 252 165 3 3 252 17 259 6.64e-27 113
MS.gene20958.t1 MTR_4g033315 25.770 357 236 4 17 357 29 372 9.76e-27 112
MS.gene20958.t1 MTR_4g033310 25.770 357 236 4 17 357 29 372 9.76e-27 112
MS.gene20958.t1 MTR_1g009200 29.348 276 181 6 17 283 25 295 2.17e-26 112
MS.gene20958.t1 MTR_3g462710 33.152 184 118 2 105 283 1 184 3.34e-26 110
MS.gene20958.t1 MTR_0294s0020 27.599 279 186 4 17 291 29 295 7.26e-26 110
MS.gene20958.t1 MTR_4g033375 28.740 254 170 3 3 254 18 262 1.69e-25 108
MS.gene20958.t1 MTR_8g103233 28.854 253 176 3 17 265 15 267 6.05e-25 107
MS.gene20958.t1 MTR_4g033330 29.134 254 169 3 3 254 17 261 6.73e-25 107
MS.gene20958.t1 MTR_7g064780 25.540 278 195 6 17 283 24 300 1.98e-24 106
MS.gene20958.t1 MTR_8g469480 27.437 277 187 4 22 285 41 316 4.49e-24 105
MS.gene20958.t1 MTR_7g098200 29.268 205 127 4 105 300 1 196 7.30e-24 103
MS.gene20958.t1 MTR_2g101650 26.545 275 190 6 17 283 22 292 1.11e-23 103
MS.gene20958.t1 MTR_7g064800 25.357 280 195 6 17 283 24 302 2.75e-23 102
MS.gene20958.t1 MTR_2g101560 29.617 287 193 6 3 283 11 294 3.36e-23 102
MS.gene20958.t1 MTR_1g057460 27.675 271 186 6 15 283 40 302 3.73e-23 102
MS.gene20958.t1 MTR_7g088820 32.258 186 119 4 105 283 1 186 4.80e-23 101
MS.gene20958.t1 MTR_3g005010 27.451 255 169 4 3 254 16 257 1.61e-22 100
MS.gene20958.t1 MTR_1g026770 26.523 279 194 5 11 283 7 280 4.34e-22 99.0
MS.gene20958.t1 MTR_4g024930 37.500 176 102 4 11 181 30 202 2.01e-21 97.1
MS.gene20958.t1 MTR_3g065350 57.778 90 4 1 282 337 66 155 2.12e-21 90.9
MS.gene20958.t1 MTR_8g038880 23.342 377 242 8 1 346 1 361 2.81e-21 96.7
MS.gene20958.t1 MTR_3g014790 25.311 241 165 1 15 255 13 238 1.05e-20 95.1
MS.gene20958.t1 MTR_1g057460 27.615 239 163 6 47 283 1 231 1.39e-19 91.3
MS.gene20958.t1 MTR_0236s0050 27.197 239 164 6 47 283 1 231 5.53e-19 89.4
MS.gene20958.t1 MTR_4g033310 30.675 163 106 1 17 179 29 184 9.55e-19 88.6
MS.gene20958.t1 MTR_4g033325 35.099 151 89 2 104 252 18 161 2.91e-18 87.0
MS.gene20958.t1 MTR_4g033325 36.923 130 80 1 125 252 6 135 5.73e-18 85.9
MS.gene20958.t1 MTR_2g093640 26.766 269 179 6 4 265 10 267 3.48e-17 84.0
MS.gene20958.t1 MTR_4g033385 36.923 130 80 1 127 254 32 161 4.30e-17 83.6
MS.gene20958.t1 MTR_2g093160 25.940 266 182 4 18 276 21 278 3.09e-16 81.3
MS.gene20958.t1 MTR_4g124330 36.975 119 54 2 122 240 9 106 3.57e-16 75.1
MS.gene20958.t1 MTR_8g469470 22.348 264 185 4 18 266 31 289 5.86e-16 80.5
MS.gene20958.t1 MTR_5g038190 24.739 287 194 7 3 276 10 287 7.96e-16 80.1
MS.gene20958.t1 MTR_2g093180 24.444 225 160 3 46 265 48 267 1.48e-14 75.9
MS.gene20958.t1 MTR_1g009170 31.034 145 95 2 142 283 9 151 2.31e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20958.t1 AT3G54140 33.088 272 177 2 17 283 22 293 4.12e-49 176
MS.gene20958.t1 AT3G54140 33.088 272 177 2 17 283 22 293 4.12e-49 176
MS.gene20958.t1 AT1G69850 40.000 235 139 1 17 249 23 257 5.27e-48 173
MS.gene20958.t1 AT3G25280 34.615 260 162 4 19 276 21 274 3.46e-47 170
MS.gene20958.t1 AT2G02020 26.179 424 220 6 17 347 40 463 4.99e-47 169
MS.gene20958.t1 AT1G62200 33.808 281 171 3 17 285 50 327 9.59e-47 170
MS.gene20958.t1 AT1G62200 33.808 281 171 3 17 285 64 341 1.02e-46 170
MS.gene20958.t1 AT1G59740 31.831 355 215 6 18 346 40 393 2.10e-46 169
MS.gene20958.t1 AT1G62200 34.409 279 167 3 17 287 50 320 4.03e-46 168
MS.gene20958.t1 AT5G01180 31.365 271 181 2 17 287 23 288 3.54e-44 162
MS.gene20958.t1 AT5G01180 31.365 271 181 2 17 287 23 288 3.54e-44 162
MS.gene20958.t1 AT5G01180 31.365 271 181 2 17 287 23 288 3.54e-44 162
MS.gene20958.t1 AT2G02020 28.286 350 212 6 17 346 40 370 1.97e-43 160
MS.gene20958.t1 AT2G37900 32.841 271 176 3 17 283 36 304 3.81e-43 159
MS.gene20958.t1 AT2G02040 31.868 273 179 2 17 287 39 306 4.30e-43 159
MS.gene20958.t1 AT1G33440 36.765 272 162 4 19 283 38 306 2.09e-42 158
MS.gene20958.t1 AT3G25260 33.475 236 151 2 19 254 21 250 2.22e-42 156
MS.gene20958.t1 AT1G12110 33.333 294 179 5 17 293 25 318 2.42e-42 157
MS.gene20958.t1 AT2G40460 31.379 290 185 5 3 283 10 294 2.54e-41 154
MS.gene20958.t1 AT3G53960 32.031 256 170 2 14 267 32 285 7.85e-41 154
MS.gene20958.t1 AT1G27040 35.294 238 149 1 17 249 21 258 8.65e-41 153
MS.gene20958.t1 AT1G27040 35.294 238 149 1 17 249 25 262 9.44e-41 153
MS.gene20958.t1 AT5G13400 35.374 294 175 7 2 281 48 340 1.81e-40 153
MS.gene20958.t1 AT2G26690 30.513 390 238 6 17 375 22 409 5.09e-40 151
MS.gene20958.t1 AT5G62730 32.836 268 155 2 17 284 54 296 9.01e-40 150
MS.gene20958.t1 AT2G26690 31.481 378 223 7 29 375 4 376 3.02e-39 148
MS.gene20958.t1 AT4G21680 33.217 286 184 4 3 283 14 297 2.56e-38 146
MS.gene20958.t1 AT2G26690 31.768 362 214 6 45 375 5 364 3.96e-38 145
MS.gene20958.t1 AT1G68570 36.727 275 161 6 18 282 22 293 4.20e-38 145
MS.gene20958.t1 AT5G62730 33.077 260 149 2 25 284 3 237 5.31e-38 144
MS.gene20958.t1 AT1G69870 32.852 277 175 3 17 283 49 324 9.18e-38 145
MS.gene20958.t1 AT1G27040 36.364 220 135 1 35 249 11 230 1.27e-37 144
MS.gene20958.t1 AT1G32450 30.909 275 184 2 17 287 35 307 5.98e-37 142
MS.gene20958.t1 AT2G37900 36.406 217 132 3 71 283 11 225 1.10e-36 140
MS.gene20958.t1 AT1G68570 36.680 259 154 5 31 282 8 263 4.22e-36 140
MS.gene20958.t1 AT5G46040 25.781 256 185 2 17 267 25 280 9.11e-34 133
MS.gene20958.t1 AT5G28470 34.252 254 160 4 17 265 15 266 4.20e-32 128
MS.gene20958.t1 AT5G46050 26.087 253 182 2 20 267 28 280 4.64e-32 128
MS.gene20958.t1 AT5G28470 34.252 254 160 4 17 265 15 266 4.83e-32 128
MS.gene20958.t1 AT1G52190 28.832 274 188 3 17 283 19 292 1.41e-30 124
MS.gene20958.t1 AT3G16180 27.431 288 197 5 5 283 9 293 1.10e-28 119
MS.gene20958.t1 AT1G18880 29.167 288 191 8 3 283 7 288 1.25e-28 118
MS.gene20958.t1 AT1G22570 29.478 268 180 3 17 275 28 295 1.29e-28 118
MS.gene20958.t1 AT1G72140 28.862 246 167 1 17 254 32 277 1.68e-28 118
MS.gene20958.t1 AT3G21670 27.841 352 211 8 38 353 51 395 4.19e-28 117
MS.gene20958.t1 AT3G54450 25.779 353 218 7 17 340 10 347 6.45e-28 116
MS.gene20958.t1 AT1G22540 31.967 244 162 2 11 252 24 265 7.37e-28 116
MS.gene20958.t1 AT5G62680 29.927 274 175 8 22 283 46 314 3.09e-27 114
MS.gene20958.t1 AT1G72125 32.645 242 150 5 21 255 31 266 3.01e-26 111
MS.gene20958.t1 AT5G19640 28.854 253 170 5 20 267 60 307 3.50e-26 111
MS.gene20958.t1 AT3G47960 29.091 275 174 8 22 283 64 330 8.26e-26 110
MS.gene20958.t1 AT1G27080 30.466 279 178 5 17 283 12 286 1.20e-25 109
MS.gene20958.t1 AT1G22570 30.544 239 157 3 46 275 20 258 3.22e-25 108
MS.gene20958.t1 AT1G72120 29.630 243 164 2 17 255 27 266 1.06e-24 107
MS.gene20958.t1 AT3G45660 28.033 239 153 6 35 266 40 266 4.58e-24 105
MS.gene20958.t1 AT3G45660 28.033 239 153 6 35 266 40 266 4.58e-24 105
MS.gene20958.t1 AT3G45660 28.033 239 153 6 35 266 61 287 5.54e-24 105
MS.gene20958.t1 AT3G45680 27.698 278 173 10 2 268 7 267 1.08e-23 103
MS.gene20958.t1 AT3G45690 26.538 260 166 8 19 266 18 264 2.89e-23 102
MS.gene20958.t1 AT1G22550 28.244 262 179 2 17 269 28 289 5.47e-23 102
MS.gene20958.t1 AT1G69860 25.271 277 194 6 17 283 16 289 3.54e-22 99.4
MS.gene20958.t1 AT1G72130 25.926 243 171 2 17 256 23 259 7.12e-22 98.6
MS.gene20958.t1 AT1G27080 30.645 248 156 5 48 283 1 244 2.59e-21 96.7
MS.gene20958.t1 AT3G45720 24.370 357 230 12 39 366 42 387 2.12e-20 94.0
MS.gene20958.t1 AT5G46050 27.381 168 117 2 105 267 1 168 3.67e-20 92.8
MS.gene20958.t1 AT3G45650 26.316 228 156 4 44 266 47 267 8.30e-20 92.4
MS.gene20958.t1 AT3G45650 26.316 228 156 4 44 266 47 267 8.51e-20 92.0
MS.gene20958.t1 AT3G45710 27.106 273 179 8 2 266 7 267 1.71e-19 91.3
MS.gene20958.t1 AT3G45700 26.923 286 172 11 2 275 7 267 1.56e-18 88.2
MS.gene20958.t1 AT5G14940 28.571 245 152 5 17 246 5 241 1.75e-17 85.1
MS.gene20958.t1 AT3G01350 29.612 206 125 3 17 210 5 202 7.12e-16 80.1
MS.gene20958.t1 AT5G11570 26.577 222 152 5 20 234 14 231 2.37e-14 75.1
MS.gene20958.t1 AT1G72130 32.000 125 82 1 135 256 17 141 1.15e-12 69.7
MS.gene20958.t1 AT1G72130 32.000 125 82 1 135 256 17 141 1.15e-12 69.7

Find 76 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTCTTCCATTGAATTA+TGG 0.165374 1.3:+60504011 None:intergenic
TGTTTCTTCCATTGAATTAT+GGG 0.210792 1.3:+60504012 None:intergenic
ATTTCTTTAACTTCCTCTAT+TGG 0.242727 1.3:-60501260 MS.gene20958:CDS
GGATCAGTTATTGGTGTTAC+TGG 0.254767 1.3:-60503126 MS.gene20958:CDS
AGGTGAAACACCTCTCTTAA+TGG 0.269533 1.3:-60501172 MS.gene20958:CDS
CAACACTTTGACAAATTTCA+TGG 0.272897 1.3:-60503758 MS.gene20958:CDS
AGCTTAGTACTATACTTTAT+TGG 0.282321 1.3:-60503811 MS.gene20958:CDS
ATCATTGTGTTTGTATGCTT+TGG 0.282815 1.3:-60503271 MS.gene20958:CDS
ACTTTCTTGCTCTCCCTTGT+TGG 0.290210 1.3:-60503730 MS.gene20958:CDS
CGGTATTGGCTTCACTAGTT+TGG 0.292053 1.3:+60501103 None:intergenic
TCAACTTTAGGATCAGTTAT+TGG 0.296658 1.3:-60503135 MS.gene20958:CDS
TTTCTTTAACTTCCTCTATT+GGG 0.299260 1.3:-60501259 MS.gene20958:CDS
AGAGCTTCCATGTTCATCTT+TGG 0.307984 1.3:-60503976 MS.gene20958:intron
ATGGAGAATACAAAGGAATT+AGG 0.323607 1.3:-60501192 MS.gene20958:CDS
TTGGTGTTACTGGTATTGTT+TGG 0.332141 1.3:-60503116 MS.gene20958:CDS
CTTGATTTACCACACGCTTT+AGG 0.333945 1.3:+60503330 None:intergenic
TCATTGTGTTTGTATGCTTT+GGG 0.336923 1.3:-60503270 MS.gene20958:CDS
GCAGACATGTTCACTCTTGT+TGG 0.342817 1.3:-60501516 MS.gene20958:intron
TAAAGTTGTTCATTAGATTC+TGG 0.349322 1.3:+60502830 None:intergenic
AGAGGTTCATTAACAGCATT+TGG 0.351216 1.3:-60503234 MS.gene20958:CDS
TGGTGTTACTGGTATTGTTT+GGG 0.373138 1.3:-60503115 MS.gene20958:CDS
ACCTGAATAATCCTCAAAAT+AGG 0.374787 1.3:+60502973 None:intergenic
AGAAGAAGAATAACCTCATT+TGG 0.377972 1.3:+60502762 None:intergenic
TGCTAACCAATTTGATGAAA+AGG 0.379188 1.3:-60503211 MS.gene20958:CDS
ATAACAGTAGCTTCTTCAAT+TGG 0.385104 1.3:-60503054 MS.gene20958:CDS
AAAATCACTCACCACCCTTC+AGG 0.386975 1.3:-60501702 MS.gene20958:CDS
TGAAGTAGAAAGTGATTTCA+TGG 0.400504 1.3:+60501458 None:intergenic
TGTTTGTATGCTTTGGGAAT+GGG 0.403406 1.3:-60503264 MS.gene20958:CDS
GCCATTTCAATGACAATAGC+TGG 0.413834 1.3:-60501636 MS.gene20958:intron
ACCAGCTATTGTCATTGAAA+TGG 0.417173 1.3:+60501635 None:intergenic
AGAAGAGGGTCCCTCGGTAT+TGG 0.424956 1.3:+60501089 None:intergenic
ACTTCCTCTATTGGGCCTCT+TGG 0.427686 1.3:-60501251 MS.gene20958:CDS
GTGTTTGTATGCTTTGGGAA+TGG 0.428271 1.3:-60503265 MS.gene20958:CDS
CAACAGATTCACCACATGTC+TGG 0.446255 1.3:-60503683 MS.gene20958:CDS
TTGGGAATGGGTGGAGTAAG+AGG 0.455587 1.3:-60503252 MS.gene20958:CDS
GAAAGTGATTTCATGGTTGA+AGG 0.467352 1.3:+60501465 None:intergenic
AATTCAATGGAAGAAACAAA+AGG 0.488343 1.3:-60504007 MS.gene20958:CDS
AACACTTTGACAAATTTCAT+GGG 0.510777 1.3:-60503757 MS.gene20958:CDS
AACTCAAACCCATAATTCAA+TGG 0.515700 1.3:-60504020 MS.gene20958:CDS
TTGTATGCTTTGGGAATGGG+TGG 0.519214 1.3:-60503261 MS.gene20958:CDS
TTTGTCAGCATTGGATAACA+TGG 0.520721 1.3:-60503854 MS.gene20958:CDS
GAGGTAAGTATCTGAGATGA+AGG 0.523013 1.3:+60503705 None:intergenic
TCTTCTGATGAAACAGATGA+TGG 0.532640 1.3:-60501069 MS.gene20958:CDS
TGTTCATTAGATTCTGGCAG+TGG 0.534338 1.3:+60502836 None:intergenic
ATTCAATGGAAGAAACAAAA+GGG 0.537445 1.3:-60504006 MS.gene20958:CDS
ACACCTCTCTTAATGGTTGG+TGG 0.538286 1.3:-60501165 MS.gene20958:CDS
AGATAGTAACAATTCAATGA+TGG 0.541244 1.3:-60501211 MS.gene20958:CDS
ATCTGTTTCATCAGAAGAAG+AGG 0.542967 1.3:+60501074 None:intergenic
CATGAAATTTGTCAAAGTGT+TGG 0.551927 1.3:+60503759 None:intergenic
GTTACACAGCTTCAAAGAGT+TGG 0.552152 1.3:-60501678 MS.gene20958:CDS
TGTACCAAGAGGCCCAATAG+AGG 0.556413 1.3:+60501247 None:intergenic
TGAAGCTGTGTAACACCTGA+AGG 0.572853 1.3:+60501687 None:intergenic
AAAACATGATGATAAAGCTA+AGG 0.573309 1.3:-60501139 MS.gene20958:CDS
TGAGATGAAGGCACCAACAA+GGG 0.577394 1.3:+60503717 None:intergenic
ATCAGAAGAAGAGGGTCCCT+CGG 0.578182 1.3:+60501083 None:intergenic
CAGCTTCAAAGAGTTGGTGT+TGG 0.586012 1.3:-60501672 MS.gene20958:CDS
TTGCACACACTAACCAAATG+AGG 0.588659 1.3:-60502775 MS.gene20958:intron
CTGAGATGAAGGCACCAACA+AGG 0.591772 1.3:+60503716 None:intergenic
CTTCCACCAACCATTAAGAG+AGG 0.596589 1.3:+60501162 None:intergenic
TTGTCAGCATTGGATAACAT+GGG 0.598817 1.3:-60503853 MS.gene20958:CDS
CAAGAAGTAACCAAGTGACA+TGG 0.600735 1.3:+60501422 None:intergenic
GAAACACCTCTCTTAATGGT+TGG 0.612482 1.3:-60501168 MS.gene20958:CDS
CTCAAAATAGGACTTTCACC+AGG 0.618578 1.3:+60502985 None:intergenic
TTCAATGATGGAGAATACAA+AGG 0.626874 1.3:-60501199 MS.gene20958:CDS
AAATCAAGTTGTGTGGAAGG+AGG 0.637005 1.3:-60503315 MS.gene20958:CDS
GGTAAATCAAGTTGTGTGGA+AGG 0.640936 1.3:-60503318 MS.gene20958:CDS
TCTGTTTCATCAGAAGAAGA+GGG 0.647970 1.3:+60501075 None:intergenic
CAATGGAAGAAACAAAAGGG+TGG 0.662396 1.3:-60504003 MS.gene20958:CDS
AATTTACATCCTAAAGCGTG+TGG 0.665140 1.3:-60503339 MS.gene20958:CDS
AACTAGTGAAGCCAATACCG+AGG 0.679593 1.3:-60501100 MS.gene20958:CDS
GAAGCTGTGTAACACCTGAA+GGG 0.679710 1.3:+60501688 None:intergenic
ACTAGTGAAGCCAATACCGA+GGG 0.680631 1.3:-60501099 MS.gene20958:CDS
GTACTTACCAAAGATGAACA+TGG 0.689840 1.3:+60503969 None:intergenic
GACATGTGGTGAATCTGTTG+AGG 0.692585 1.3:+60503686 None:intergenic
GCTGTGTAACACCTGAAGGG+TGG 0.734299 1.3:+60501691 None:intergenic
GTGTGGTAAATCAAGTTGTG+TGG 0.736178 1.3:-60503322 MS.gene20958:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAGAAAAAAAACATT+TGG - chr1.3:60501614-60501633 MS.gene20958:intron 10.0%
!!! TTTTCTTTATTTTATGTAAT+TGG + chr1.3:60501606-60501625 None:intergenic 10.0%
!! AAAAACAAATAGTGTTAATT+TGG + chr1.3:60501239-60501258 None:intergenic 15.0%
!! TTATCACAAAATGTTAATTA+AGG + chr1.3:60502450-60502469 None:intergenic 15.0%
!! TTATTAATACTGTTACTAAA+AGG - chr1.3:60503792-60503811 MS.gene20958:CDS 15.0%
!!! GTTATTTATTTATTTTGAGA+GGG - chr1.3:60502963-60502982 MS.gene20958:intron 15.0%
!! ACAAAGAAAAGTTCATAAAT+TGG + chr1.3:60503437-60503456 None:intergenic 20.0%
!! ATGGTTCCAAAATAAATAAT+TGG + chr1.3:60502839-60502858 None:intergenic 20.0%
!!! ACAATTTGAACTTGTTTTAT+TGG - chr1.3:60503864-60503883 MS.gene20958:intron 20.0%
!!! AGTTTGAAATATGTTACTAT+AGG - chr1.3:60501108-60501127 MS.gene20958:CDS 20.0%
!!! CAAGTACCAATTATTTATTT+TGG - chr1.3:60502830-60502849 MS.gene20958:CDS 20.0%
!!! GGTTATTTATTTATTTTGAG+AGG - chr1.3:60502962-60502981 MS.gene20958:intron 20.0%
!!! GTTTGAAATATGTTACTATA+GGG - chr1.3:60501109-60501128 MS.gene20958:CDS 20.0%
!!! TATCACTTTTTCTTATGTTT+TGG + chr1.3:60502693-60502712 None:intergenic 20.0%
!!! TATTTTATGTAATTGGAACA+TGG + chr1.3:60501599-60501618 None:intergenic 20.0%
!!! TCTTTTCAATATGCTATATT+TGG - chr1.3:60503629-60503648 MS.gene20958:intron 20.0%
!!! TGAGTGATTTTTCTAATAAA+TGG + chr1.3:60503461-60503480 None:intergenic 20.0%
!!! TGTAACAAAACATATTGATT+TGG - chr1.3:60501268-60501287 MS.gene20958:CDS 20.0%
!!! TTTTAATCATTGTATTGTGT+AGG - chr1.3:60501775-60501794 MS.gene20958:intron 20.0%
!!! TTTTGTTTGGTACAAAATTA+CGG - chr1.3:60501688-60501707 MS.gene20958:CDS 20.0%
! AAAACATGATGATAAAGCTA+AGG - chr1.3:60504033-60504052 MS.gene20958:CDS 25.0%
! AACAAGAATGTTACCTATAT+TGG - chr1.3:60503262-60503281 MS.gene20958:CDS 25.0%
! AACACTTTGACAAATTTCAT+GGG - chr1.3:60501415-60501434 MS.gene20958:intron 25.0%
! AATGTGCATAAGAAAATTAG+TGG + chr1.3:60503410-60503429 None:intergenic 25.0%
! AATTCAATGGAAGAAACAAA+AGG - chr1.3:60501165-60501184 MS.gene20958:CDS 25.0%
! AGATAGTAACAATTCAATGA+TGG - chr1.3:60503961-60503980 MS.gene20958:intron 25.0%
! AGCTTAGTACTATACTTTAT+TGG - chr1.3:60501361-60501380 MS.gene20958:intron 25.0%
! ATATAGGTAACATTCTTGTT+AGG + chr1.3:60503262-60503281 None:intergenic 25.0%
! ATGTGCATAAGAAAATTAGT+GGG + chr1.3:60503409-60503428 None:intergenic 25.0%
! ATTAAGTAATGCCAAGAATT+TGG - chr1.3:60502575-60502594 MS.gene20958:intron 25.0%
! ATTCAATGGAAGAAACAAAA+GGG - chr1.3:60501166-60501185 MS.gene20958:CDS 25.0%
! CATGCATTTATTTGTGTAAA+GGG + chr1.3:60503106-60503125 None:intergenic 25.0%
! CTATGTTATCTACAAAGTAA+AGG + chr1.3:60502799-60502818 None:intergenic 25.0%
! GATAACCAAAATAAGCTTAT+TGG + chr1.3:60503611-60503630 None:intergenic 25.0%
! GCATTTATACTCAAATGTTA+TGG - chr1.3:60503125-60503144 MS.gene20958:CDS 25.0%
! TAAAGTTGTTCATTAGATTC+TGG + chr1.3:60502345-60502364 None:intergenic 25.0%
! TAACCTGCATAAAACAATAA+TGG + chr1.3:60502287-60502306 None:intergenic 25.0%
! TGTTTCTTCCATTGAATTAT+GGG + chr1.3:60501163-60501182 None:intergenic 25.0%
! TTAAGTAATGCCAAGAATTT+GGG - chr1.3:60502576-60502595 MS.gene20958:intron 25.0%
! TTGTGTAAAGGGAAATAAAT+GGG + chr1.3:60503095-60503114 None:intergenic 25.0%
! TTTGTGTAAAGGGAAATAAA+TGG + chr1.3:60503096-60503115 None:intergenic 25.0%
!! AAAAAACATTTGGTTTAGAG+AGG - chr1.3:60501624-60501643 MS.gene20958:intron 25.0%
!! ATTTCTTTAACTTCCTCTAT+TGG - chr1.3:60503912-60503931 MS.gene20958:intron 25.0%
!! CAAAACCAATAAGCTTATTT+TGG - chr1.3:60503603-60503622 MS.gene20958:intron 25.0%
!! CTTTTACTTAGTTCAACTTT+AGG - chr1.3:60502025-60502044 MS.gene20958:intron 25.0%
!! TTGTTTCTTCCATTGAATTA+TGG + chr1.3:60501164-60501183 None:intergenic 25.0%
!! TTTCTTTAACTTCCTCTATT+GGG - chr1.3:60503913-60503932 MS.gene20958:intron 25.0%
!!! AACATTTTGTGATAATGTGT+TGG - chr1.3:60502455-60502474 MS.gene20958:intron 25.0%
!!! AATAAGCTTATTGGTTTTGA+AGG + chr1.3:60503602-60503621 None:intergenic 25.0%
!!! ATAAGCTTATTGGTTTTGAA+GGG + chr1.3:60503601-60503620 None:intergenic 25.0%
!!! TAACCATTATTGTTTTATGC+AGG - chr1.3:60502281-60502300 MS.gene20958:intron 25.0%
!!! TTATTTATTTTGAGAGGGTA+GGG - chr1.3:60502968-60502987 MS.gene20958:intron 25.0%
!!! TTTATTTATTTTGAGAGGGT+AGG - chr1.3:60502967-60502986 MS.gene20958:intron 25.0%
AAACATTCTCAGTACAACAA+GGG - chr1.3:60503324-60503343 MS.gene20958:CDS 30.0%
AAAGAATCTTAACAATGTGC+TGG + chr1.3:60502538-60502557 None:intergenic 30.0%
AACTCAAACCCATAATTCAA+TGG - chr1.3:60501152-60501171 MS.gene20958:CDS 30.0%
AAGAAAATTAGTGGGATAAC+AGG + chr1.3:60503401-60503420 None:intergenic 30.0%
AATGCAATGAACCTTAAACT+TGG - chr1.3:60503347-60503366 MS.gene20958:CDS 30.0%
AATTGCTAAGGTGAAATTGA+AGG - chr1.3:60502998-60503017 MS.gene20958:CDS 30.0%
ACAATTGTACTTGCCAATAT+AGG + chr1.3:60503278-60503297 None:intergenic 30.0%
ACCTGAATAATCCTCAAAAT+AGG + chr1.3:60502202-60502221 None:intergenic 30.0%
AGAAGAAGAATAACCTCATT+TGG + chr1.3:60502413-60502432 None:intergenic 30.0%
ATAACAGTAGCTTCTTCAAT+TGG - chr1.3:60502118-60502137 MS.gene20958:intron 30.0%
ATAATGTGTTGGACTAACTT+AGG - chr1.3:60502466-60502485 MS.gene20958:intron 30.0%
ATCATTGTGTTTGTATGCTT+TGG - chr1.3:60501901-60501920 MS.gene20958:intron 30.0%
ATGGAGAATACAAAGGAATT+AGG - chr1.3:60503980-60503999 MS.gene20958:CDS 30.0%
CAAACTGTTACAAAAGAGAA+GGG + chr1.3:60501094-60501113 None:intergenic 30.0%
CAACACTTTGACAAATTTCA+TGG - chr1.3:60501414-60501433 MS.gene20958:intron 30.0%
CATGAAATTTGTCAAAGTGT+TGG + chr1.3:60501416-60501435 None:intergenic 30.0%
GATGACAAAGATATTGTTTG+TGG - chr1.3:60503045-60503064 MS.gene20958:CDS 30.0%
GCATGCATTTATTTGTGTAA+AGG + chr1.3:60503107-60503126 None:intergenic 30.0%
GTTAACTAAAAAGCAAAGAG+AGG + chr1.3:60502669-60502688 None:intergenic 30.0%
TCAAACTGTTACAAAAGAGA+AGG + chr1.3:60501095-60501114 None:intergenic 30.0%
TCATTGTGTTTGTATGCTTT+GGG - chr1.3:60501902-60501921 MS.gene20958:intron 30.0%
TGAAGTAGAAAGTGATTTCA+TGG + chr1.3:60503717-60503736 None:intergenic 30.0%
TGCTAACCAATTTGATGAAA+AGG - chr1.3:60501961-60501980 MS.gene20958:intron 30.0%
! ACTCAAATGTTATGGTTTGT+TGG - chr1.3:60503133-60503152 MS.gene20958:CDS 30.0%
! TTCAATGATGGAGAATACAA+AGG - chr1.3:60503973-60503992 MS.gene20958:intron 30.0%
! TTGGATCCTTTTCATCAAAT+TGG + chr1.3:60501970-60501989 None:intergenic 30.0%
! TTTTATGCAGGTTATTGTTG+TGG - chr1.3:60502293-60502312 MS.gene20958:intron 30.0%
!! TCAACTTTAGGATCAGTTAT+TGG - chr1.3:60502037-60502056 MS.gene20958:intron 30.0%
!! TCCTATTTTGAGGATTATTC+AGG - chr1.3:60502198-60502217 MS.gene20958:intron 30.0%
!!! CACTTGCAACTTTTTTCAAT+TGG - chr1.3:60502002-60502021 MS.gene20958:intron 30.0%
!!! TATTTATTTTGAGAGGGTAG+GGG - chr1.3:60502969-60502988 MS.gene20958:intron 30.0%
AATTAGTGGGATAACAGGAA+TGG + chr1.3:60503396-60503415 None:intergenic 35.0%
AATTTACATCCTAAAGCGTG+TGG - chr1.3:60501833-60501852 MS.gene20958:intron 35.0%
ACCAGCTATTGTCATTGAAA+TGG + chr1.3:60503540-60503559 None:intergenic 35.0%
AGACTTACAGAGAATGATCA+TGG - chr1.3:60502634-60502653 MS.gene20958:intron 35.0%
AGAGGTTCATTAACAGCATT+TGG - chr1.3:60501938-60501957 MS.gene20958:intron 35.0%
ATCTGTTTCATCAGAAGAAG+AGG + chr1.3:60504101-60504120 None:intergenic 35.0%
ATGTAATTGGAACATGGCAT+TGG + chr1.3:60501593-60501612 None:intergenic 35.0%
CAAACATTCTCAGTACAACA+AGG - chr1.3:60503323-60503342 MS.gene20958:CDS 35.0%
CCAAATACCACAGAAAAAGA+GGG + chr1.3:60502767-60502786 None:intergenic 35.0%
CGATTAGGTCATACTTTCTA+TGG + chr1.3:60502858-60502877 None:intergenic 35.0%
CTGATTTCACAACGAAATCA+GGG - chr1.3:60502890-60502909 MS.gene20958:intron 35.0%
CTGATTTCGTTGTGAAATCA+GGG + chr1.3:60502891-60502910 None:intergenic 35.0%
CTGTGAAAGAACCAAGTTTA+AGG + chr1.3:60503361-60503380 None:intergenic 35.0%
GAAAGTGATTTCATGGTTGA+AGG + chr1.3:60503710-60503729 None:intergenic 35.0%
GAAGTTAAAAGAAGAGACCA+AGG - chr1.3:60503566-60503585 MS.gene20958:intron 35.0%
GTACTTACCAAAGATGAACA+TGG + chr1.3:60501206-60501225 None:intergenic 35.0%
TACACAAAAAGCTTGGCATT+GGG - chr1.3:60502084-60502103 MS.gene20958:intron 35.0%
TCATTGTATTGTGTAGGCTT+TGG - chr1.3:60501781-60501800 MS.gene20958:intron 35.0%
TCTGTTTCATCAGAAGAAGA+GGG + chr1.3:60504100-60504119 None:intergenic 35.0%
TCTTCTGATGAAACAGATGA+TGG - chr1.3:60504103-60504122 MS.gene20958:intron 35.0%
TGATTCAAAACACACGCTAA+GGG - chr1.3:60502941-60502960 MS.gene20958:intron 35.0%
TGTAATTGGAACATGGCATT+GGG + chr1.3:60501592-60501611 None:intergenic 35.0%
! AGTAAACAAGGTTGGTTACA+AGG - chr1.3:60503824-60503843 MS.gene20958:CDS 35.0%
! TAGAAAGTATGACCTAATCG+CGG - chr1.3:60502858-60502877 MS.gene20958:CDS 35.0%
! TGTAACCAACCTTGTTTACT+TGG + chr1.3:60503824-60503843 None:intergenic 35.0%
! TGTTTTGTACTTGTACCAAG+AGG + chr1.3:60503939-60503958 None:intergenic 35.0%
! TTGTCAGCATTGGATAACAT+GGG - chr1.3:60501319-60501338 MS.gene20958:intron 35.0%
! TTTGTCAGCATTGGATAACA+TGG - chr1.3:60501318-60501337 MS.gene20958:intron 35.0%
! TTTTACCGTATCAAAACACC+TGG - chr1.3:60502169-60502188 MS.gene20958:intron 35.0%
!! ATGGTTTGTTGGATTGAATC+AGG - chr1.3:60503144-60503163 MS.gene20958:CDS 35.0%
!! TGGTGTTACTGGTATTGTTT+GGG - chr1.3:60502057-60502076 MS.gene20958:intron 35.0%
!! TGTTTGTATGCTTTGGGAAT+GGG - chr1.3:60501908-60501927 MS.gene20958:intron 35.0%
!! TTGGTGTTACTGGTATTGTT+TGG - chr1.3:60502056-60502075 MS.gene20958:intron 35.0%
!! TTTTTCAGTGAGTTTGTGTC+AGG + chr1.3:60502727-60502746 None:intergenic 35.0%
!!! CTTTTTTCCCTCTTTTTCTG+TGG - chr1.3:60502757-60502776 MS.gene20958:intron 35.0%
!!! GGTGTTTTGATACGGTAAAA+AGG + chr1.3:60502169-60502188 None:intergenic 35.0%
!!! GGTTTTGTAACACTTGCTAT+TGG - chr1.3:60502139-60502158 MS.gene20958:intron 35.0%
!!! TTTCACCAGGTGTTTTGATA+CGG + chr1.3:60502177-60502196 None:intergenic 35.0%
ACACAAAAAGCTTGGCATTG+GGG - chr1.3:60502085-60502104 MS.gene20958:intron 40.0%
AGAGCTTCCATGTTCATCTT+TGG - chr1.3:60501196-60501215 MS.gene20958:CDS 40.0%
AGGATCACACCAAGTAAACA+AGG - chr1.3:60503812-60503831 MS.gene20958:CDS 40.0%
AGGTGAAACACCTCTCTTAA+TGG - chr1.3:60504000-60504019 MS.gene20958:CDS 40.0%
ATAACAGGAATGGATGATGC+AGG + chr1.3:60503386-60503405 None:intergenic 40.0%
ATCACTCACTTCTACACGTT+CGG - chr1.3:60502605-60502624 MS.gene20958:intron 40.0%
ATTCTGAACCTCAACAACCA+TGG - chr1.3:60503198-60503217 MS.gene20958:CDS 40.0%
ATTTCGTTGTGAAATCAGGG+TGG + chr1.3:60502888-60502907 None:intergenic 40.0%
CAAGAAGTAACCAAGTGACA+TGG + chr1.3:60503753-60503772 None:intergenic 40.0%
CAATGGAAGAAACAAAAGGG+TGG - chr1.3:60501169-60501188 MS.gene20958:CDS 40.0%
CCTGATTTCACAACGAAATC+AGG - chr1.3:60502889-60502908 MS.gene20958:intron 40.0%
CCTGATTTCGTTGTGAAATC+AGG + chr1.3:60502892-60502911 None:intergenic 40.0%
CGATGAGTTTGACAGAATCA+CGG - chr1.3:60501657-60501676 MS.gene20958:CDS 40.0%
CGTGATTCTGTCAAACTCAT+CGG + chr1.3:60501659-60501678 None:intergenic 40.0%
CTCAAAATAGGACTTTCACC+AGG + chr1.3:60502190-60502209 None:intergenic 40.0%
CTTGATTTACCACACGCTTT+AGG + chr1.3:60501845-60501864 None:intergenic 40.0%
GAAACACCTCTCTTAATGGT+TGG - chr1.3:60504004-60504023 MS.gene20958:CDS 40.0%
GCCAAATACCACAGAAAAAG+AGG + chr1.3:60502768-60502787 None:intergenic 40.0%
GCCATTTCAATGACAATAGC+TGG - chr1.3:60503536-60503555 MS.gene20958:intron 40.0%
GTACACAAAAAGCTTGGCAT+TGG - chr1.3:60502083-60502102 MS.gene20958:intron 40.0%
GTGATTCAAAACACACGCTA+AGG - chr1.3:60502940-60502959 MS.gene20958:intron 40.0%
GTGTAGAAGTGAGTGATAGT+AGG + chr1.3:60502602-60502621 None:intergenic 40.0%
GTTACACAGCTTCAAAGAGT+TGG - chr1.3:60503494-60503513 MS.gene20958:intron 40.0%
TCACACCAAGTAAACAAGGT+TGG - chr1.3:60503816-60503835 MS.gene20958:CDS 40.0%
TGATAGTAGGCCCAAATTCT+TGG + chr1.3:60502589-60502608 None:intergenic 40.0%
TGATCCAAAAACCAGACATG+TGG + chr1.3:60501503-60501522 None:intergenic 40.0%
TGTTCATTAGATTCTGGCAG+TGG + chr1.3:60502339-60502358 None:intergenic 40.0%
TTGCACACACTAACCAAATG+AGG - chr1.3:60502397-60502416 MS.gene20958:intron 40.0%
! AAATCAAGTTGTGTGGAAGG+AGG - chr1.3:60501857-60501876 MS.gene20958:intron 40.0%
! ACGTTTTTGTCCATGTCACT+TGG - chr1.3:60503740-60503759 MS.gene20958:CDS 40.0%
! CCCTCTTTTTCTGTGGTATT+TGG - chr1.3:60502764-60502783 MS.gene20958:intron 40.0%
! CTGGTGAAAGTCCTATTTTG+AGG - chr1.3:60502188-60502207 MS.gene20958:intron 40.0%
! GAGGTAAGTATCTGAGATGA+AGG + chr1.3:60501470-60501489 None:intergenic 40.0%
! GCAAGTGCTTTTGCTTCATT+TGG + chr1.3:60501989-60502008 None:intergenic 40.0%
! GGGTTAGTACACAAAAAGCT+TGG - chr1.3:60502077-60502096 MS.gene20958:intron 40.0%
! GGTAAATCAAGTTGTGTGGA+AGG - chr1.3:60501854-60501873 MS.gene20958:intron 40.0%
! GTGTGGTAAATCAAGTTGTG+TGG - chr1.3:60501850-60501869 MS.gene20958:intron 40.0%
! TGGCATTGGGATTTGGAATT+TGG + chr1.3:60501579-60501598 None:intergenic 40.0%
! TTGAAGGGTCTTTTCTTCCT+TGG + chr1.3:60503586-60503605 None:intergenic 40.0%
!! CATGGGTTTTGTGACAAACA+TGG - chr1.3:60501336-60501355 MS.gene20958:intron 40.0%
!! GGATCAGTTATTGGTGTTAC+TGG - chr1.3:60502046-60502065 MS.gene20958:intron 40.0%
!! GTGTTTGTATGCTTTGGGAA+TGG - chr1.3:60501907-60501926 MS.gene20958:intron 40.0%
!! TGATGCAGTTTTGTCAGCAT+TGG - chr1.3:60501309-60501328 MS.gene20958:intron 40.0%
!!! CACGGTTAGTCACTTTTGTT+TGG - chr1.3:60501675-60501694 MS.gene20958:CDS 40.0%
!!! TTCACCACATGTCTGGTTTT+TGG - chr1.3:60501496-60501515 MS.gene20958:CDS 40.0%
AAAATCACTCACCACCCTTC+AGG - chr1.3:60503470-60503489 MS.gene20958:intron 45.0%
AACTAGTGAAGCCAATACCG+AGG - chr1.3:60504072-60504091 MS.gene20958:intron 45.0%
ACACCTCTCTTAATGGTTGG+TGG - chr1.3:60504007-60504026 MS.gene20958:CDS 45.0%
ACTAGTGAAGCCAATACCGA+GGG - chr1.3:60504073-60504092 MS.gene20958:intron 45.0%
ACTTTCTTGCTCTCCCTTGT+TGG - chr1.3:60501442-60501461 MS.gene20958:CDS 45.0%
CAAACCTTCCATGGTTGTTG+AGG + chr1.3:60503209-60503228 None:intergenic 45.0%
CAACAGATTCACCACATGTC+TGG - chr1.3:60501489-60501508 MS.gene20958:CDS 45.0%
CTTCCACCAACCATTAAGAG+AGG + chr1.3:60504013-60504032 None:intergenic 45.0%
GAAGCTGTGTAACACCTGAA+GGG + chr1.3:60503487-60503506 None:intergenic 45.0%
GACATGTGGTGAATCTGTTG+AGG + chr1.3:60501489-60501508 None:intergenic 45.0%
GCAGACATGTTCACTCTTGT+TGG - chr1.3:60503656-60503675 MS.gene20958:intron 45.0%
TCACTCACTTCTACACGTTC+GGG - chr1.3:60502606-60502625 MS.gene20958:intron 45.0%
TGAACCTCAACAACCATGGA+AGG - chr1.3:60503202-60503221 MS.gene20958:CDS 45.0%
TGAAGCTGTGTAACACCTGA+AGG + chr1.3:60503488-60503507 None:intergenic 45.0%
TTCTGTCAAACTCATCGGTG+AGG + chr1.3:60501654-60501673 None:intergenic 45.0%
! TGGAACATGGCATTGGGATT+TGG + chr1.3:60501586-60501605 None:intergenic 45.0%
!! CAGCTTCAAAGAGTTGGTGT+TGG - chr1.3:60503500-60503519 MS.gene20958:intron 45.0%
!! CGGTATTGGCTTCACTAGTT+TGG + chr1.3:60504072-60504091 None:intergenic 45.0%
!! TGAGATGAAGGCACCAACAA+GGG + chr1.3:60501458-60501477 None:intergenic 45.0%
!! TTGTATGCTTTGGGAATGGG+TGG - chr1.3:60501911-60501930 MS.gene20958:intron 45.0%
!!! TTATTTTGAGAGGGTAGGGG+AGG - chr1.3:60502972-60502991 MS.gene20958:intron 45.0%
ACTTCCTCTATTGGGCCTCT+TGG - chr1.3:60503921-60503940 MS.gene20958:intron 50.0%
ATCAGAAGAAGAGGGTCCCT+CGG + chr1.3:60504092-60504111 None:intergenic 50.0%
CACTCACTTCTACACGTTCG+GGG - chr1.3:60502607-60502626 MS.gene20958:intron 50.0%
GTCACTGTGCAAACCTTCCA+TGG + chr1.3:60503218-60503237 None:intergenic 50.0%
TAGGGGAGGTGGAATTGCTA+AGG - chr1.3:60502986-60503005 MS.gene20958:CDS 50.0%
TGTACCAAGAGGCCCAATAG+AGG + chr1.3:60503928-60503947 None:intergenic 50.0%
TTGGGAATGGGTGGAGTAAG+AGG - chr1.3:60501920-60501939 MS.gene20958:intron 50.0%
!! CTGAGATGAAGGCACCAACA+AGG + chr1.3:60501459-60501478 None:intergenic 50.0%
AGAAGAGGGTCCCTCGGTAT+TGG + chr1.3:60504086-60504105 None:intergenic 55.0%
GCTGTGTAACACCTGAAGGG+TGG + chr1.3:60503484-60503503 None:intergenic 55.0%
!! TTTTGAGAGGGTAGGGGAGG+TGG - chr1.3:60502975-60502994 MS.gene20958:CDS 55.0%
CAGGGTGGCTCACCGCGATT+AGG + chr1.3:60502873-60502892 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 60501044 60504150 60501044 ID=MS.gene20958
chr1.3 mRNA 60501044 60504150 60501044 ID=MS.gene20958.t1;Parent=MS.gene20958
chr1.3 exon 60504148 60504150 60504148 ID=MS.gene20958.t1.exon1;Parent=MS.gene20958.t1
chr1.3 CDS 60504148 60504150 60504148 ID=cds.MS.gene20958.t1;Parent=MS.gene20958.t1
chr1.3 exon 60503977 60504064 60503977 ID=MS.gene20958.t1.exon2;Parent=MS.gene20958.t1
chr1.3 CDS 60503977 60504064 60503977 ID=cds.MS.gene20958.t1;Parent=MS.gene20958.t1
chr1.3 exon 60503660 60503877 60503660 ID=MS.gene20958.t1.exon3;Parent=MS.gene20958.t1
chr1.3 CDS 60503660 60503877 60503660 ID=cds.MS.gene20958.t1;Parent=MS.gene20958.t1
chr1.3 exon 60502975 60503397 60502975 ID=MS.gene20958.t1.exon4;Parent=MS.gene20958.t1
chr1.3 CDS 60502975 60503397 60502975 ID=cds.MS.gene20958.t1;Parent=MS.gene20958.t1
chr1.3 exon 60502776 60502891 60502776 ID=MS.gene20958.t1.exon5;Parent=MS.gene20958.t1
chr1.3 CDS 60502776 60502891 60502776 ID=cds.MS.gene20958.t1;Parent=MS.gene20958.t1
chr1.3 exon 60501637 60501725 60501637 ID=MS.gene20958.t1.exon6;Parent=MS.gene20958.t1
chr1.3 CDS 60501637 60501725 60501637 ID=cds.MS.gene20958.t1;Parent=MS.gene20958.t1
chr1.3 exon 60501433 60501534 60501433 ID=MS.gene20958.t1.exon7;Parent=MS.gene20958.t1
chr1.3 CDS 60501433 60501534 60501433 ID=cds.MS.gene20958.t1;Parent=MS.gene20958.t1
chr1.3 exon 60501044 60501300 60501044 ID=MS.gene20958.t1.exon8;Parent=MS.gene20958.t1
chr1.3 CDS 60501044 60501300 60501044 ID=cds.MS.gene20958.t1;Parent=MS.gene20958.t1
Gene Sequence

>MS.gene20958

ATGGTAAGCTAGCTAAACAATTCAATGCATTATTCACAATTTTTTTTCCCTTCTCTTTTGTAACAGTTTGAAATATGTTACTATAGGGAGACAAAGAAGTAAAAGAAGAACTCAAACCCATAATTCAATGGAAGAAACAAAAGGGTGGATTTAGAGCTTCCATGTTCATCTTTGGTAAGTACAAGTTTTTCACCAAATTAACACTATTTGTTTTTATGAGCTTATGTAACAAAACATATTGATTTGGTAACATTTTGTTCATTGTTGATGCAGTTTTGTCAGCATTGGATAACATGGGTTTTGTGACAAACATGGTGAGCTTAGTACTATACTTTATTGGAGTGATGCACTTTGATCTTTCAAGCTCTGCCAACACTTTGACAAATTTCATGGGCTCAACTTTCTTGCTCTCCCTTGTTGGTGCCTTCATCTCAGATACTTACCTCAACAGATTCACCACATGTCTGGTTTTTGGATCACTCGAAGTTATTGTAAGTATTTACTTACTAATCATTATTATATTTCAAACACTCCAAATTCCAAATCCCAATGCCATGTTCCAATTACATAAAATAAAGAAAAAAAACATTTGGTTTAGAGAGGTTAACCTCACCGATGAGTTTGACAGAATCACGGTTAGTCACTTTTGTTTGGTACAAAATTACGGTGACACTGTAATTTTGTCATTTTGCGAAAACATGTACTATGTTTGTTTATGATTTTAATTTTAATTTTAATCATTGTATTGTGTAGGCTTTGGTAATGATCACAATTCAAGCTGCATTAGATAATTTACATCCTAAAGCGTGTGGTAAATCAAGTTGTGTGGAAGGAGGCATAGCAGTGATGTTTTACTCATCATTGTGTTTGTATGCTTTGGGAATGGGTGGAGTAAGAGGTTCATTAACAGCATTTGGTGCTAACCAATTTGATGAAAAGGATCCAAATGAAGCAAAAGCACTTGCAACTTTTTTCAATTGGCTTTTACTTAGTTCAACTTTAGGATCAGTTATTGGTGTTACTGGTATTGTTTGGGTTAGTACACAAAAAGCTTGGCATTGGGGATTTTTCATCATAACAGTAGCTTCTTCAATTGGTTTTGTAACACTTGCTATTGGTAAACCTTTTTACCGTATCAAAACACCTGGTGAAAGTCCTATTTTGAGGATTATTCAGGTCTGTAATTAATTATTCTCTAATCATTTTAACTAGTTCATTGATTCATTCATGAGTTTATTAACCATTATTGTTTTATGCAGGTTATTGTTGTGGCTTTTAAGAATAGAAAGCTACCACTGCCAGAATCTAATGAACAACTTTATGAAGTGTATAAAGATGCTACTCTAGAGAAGATTGCACACACTAACCAAATGAGGTTATTCTTCTTCTACATATTCATCATGCCTTAATTAACATTTTGTGATAATGTGTTGGACTAACTTAGGCTAATAATGTTGATATGCATGATGACAATTATGAATTACATTGTGTCCAGCACATTGTTAAGATTCTTTTTCTTCAAGTACGACTAATTAAGTAATGCCAAGAATTTGGGCCTACTATCACTCACTTCTACACGTTCGGGGTAGCAGACTTACAGAGAATGATCATGGAAAATATGTCCTCTCTTTGCTTTTTAGTTAACACCAAAACATAAGAAAAAGTGATAATAATAAATTTCCTGACACAAACTCACTGAAAAAGTTTTTCACACTTTTTTCCCTCTTTTTCTGTGGTATTTGGCTTAGTACACCTTTACTTTGTAGATAACATAGAAAGTGAAAATCAAGTACCAATTATTTATTTTGGAACCATAGAAAGTATGACCTAATCGCGGTGAGCCACCCTGATTTCACAACGAAATCAGGGTGCTGCTACGATTTTGTCAAACTCGTTGTGATTCAAAACACACGCTAAGGGTTATTTATTTATTTTGAGAGGGTAGGGGAGGTGGAATTGCTAAGGTGAAATTGAAGGACAAACTTCACATGCACAATAATTGATGACAAAGATATTGTTTGTGGTTGTGAAAACTGAAAACATTTATTCCCATTTATTTCCCTTTACACAAATAAATGCATGCATTTATACTCAAATGTTATGGTTTGTTGGATTGAATCAGGTTTCTAGATAAAGCAGCAATTCTTCAAGAAAATTCTGAACCTCAACAACCATGGAAGGTTTGCACAGTGACACAAGTTGAAGAAGTAAAAATCCTAACAAGAATGTTACCTATATTGGCAAGTACAATTGTAATGAACACATGTTTAGCACAACTTCAAACATTCTCAGTACAACAAGGGAATGCAATGAACCTTAAACTTGGTTCTTTCACAGTACCTGCATCATCCATTCCTGTTATCCCACTAATTTTCTTATGCACATTGATTCCAATTTATGAACTTTTCTTTGTACCATTTATTAGAAAAATCACTCACCACCCTTCAGGTGTTACACAGCTTCAAAGAGTTGGTGTTGGACTAGTACTCTCAGCCATTTCAATGACAATAGCTGGTTTTATAGAAGTTAAAAGAAGAGACCAAGGAAGAAAAGACCCTTCAAAACCAATAAGCTTATTTTGGTTATCTTTTCAATATGCTATATTTGGTATTGCAGACATGTTCACTCTTGTTGGACTATTAGAATTCTTCTACAGAGAAGCACCTTCAACCATGAAATCACTTTCTACTTCATTCACGTTTTTGTCCATGTCACTTGGTTACTTCTTGAGTACTGTTTTTGTTAATGTTATTAATACTGTTACTAAAAGGATCACACCAAGTAAACAAGGTTGGTTACAAGGTTTTGATTTAAATCAAAACAATTTGAACTTGTTTTATTGGTTCTTAGCTATCTTAAGCTGTCTTAATTTCTTTAACTTCCTCTATTGGGCCTCTTGGTACAAGTACAAAACAGAAGATAGTAACAATTCAATGATGGAGAATACAAAGGAATTAGGTGAAACACCTCTCTTAATGGTTGGTGGAAGAAAACATGATGATAAAGCTAAGGCAAAAGAAAGTAGCCAAACTAGTGAAGCCAATACCGAGGGACCCTCTTCTTCTGATGAAACAGATGATGGCAAAGAGAAAGAAAGACATAGATGA

Protein sequence

>MS.gene20958.t1

MGDKEVKEELKPIIQWKKQKGGFRASMFIFVLSALDNMGFVTNMVSLVLYFIGVMHFDLSSSANTLTNFMGSTFLLSLVGAFISDTYLNRFTTCLVFGSLEVIALVMITIQAALDNLHPKACGKSSCVEGGIAVMFYSSLCLYALGMGGVRGSLTAFGANQFDEKDPNEAKALATFFNWLLLSSTLGSVIGVTGIVWVSTQKAWHWGFFIITVASSIGFVTLAIGKPFYRIKTPGESPILRIIQVIVVAFKNRKLPLPESNEQLYEVYKDATLEKIAHTNQMRKITHHPSGVTQLQRVGVGLVLSAISMTIADMFTLVGLLEFFYREAPSTMKSLSTSFTFLSMSLAILSCLNFFNFLYWASWYKYKTEDSNNSMMENTKELGETPLLMVGGRKHDDKAKAKESSQTSEANTEGPSSSDETDDGKEKERHR