AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21484

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21484.t1 MTR_5g014090 97.456 629 16 0 1 629 1 629 0.0 1267
MS.gene21484.t1 MTR_5g014090 97.053 509 15 0 1 509 1 509 0.0 1018
MS.gene21484.t1 MTR_4g098850 62.162 629 167 11 5 625 282 847 0.0 741
MS.gene21484.t1 MTR_4g098850 80.930 215 40 1 411 625 2 215 1.61e-115 365
MS.gene21484.t1 MTR_6g042240 41.121 642 319 12 1 613 1 612 1.57e-150 449
MS.gene21484.t1 MTR_6g042240 41.232 633 313 12 10 613 23 625 8.25e-149 445
MS.gene21484.t1 MTR_6g042240 44.080 549 266 10 89 613 41 572 1.62e-147 439
MS.gene21484.t1 MTR_1g097690 40.093 646 309 15 2 620 7 601 4.79e-141 424
MS.gene21484.t1 MTR_1g097690 36.567 536 265 13 2 510 7 494 1.79e-91 292
MS.gene21484.t1 MTR_7g095260 50.923 271 130 1 362 629 231 501 2.29e-88 284
MS.gene21484.t1 MTR_7g095260 41.525 118 69 0 78 195 12 129 1.47e-23 105
MS.gene21484.t1 MTR_7g095260 50.923 271 130 1 362 629 283 553 6.07e-88 284
MS.gene21484.t1 MTR_7g095260 35.789 190 105 3 7 195 8 181 2.77e-29 122
MS.gene21484.t1 MTR_1g103330 51.087 276 130 3 354 626 303 576 5.13e-87 283
MS.gene21484.t1 MTR_1g103330 34.021 194 112 5 1 194 1 178 2.11e-26 114
MS.gene21484.t1 MTR_5g006820 49.643 280 136 3 350 626 338 615 2.90e-86 282
MS.gene21484.t1 MTR_5g006820 46.226 106 55 1 89 194 77 180 2.21e-23 105
MS.gene21484.t1 MTR_1g071680 50.376 266 129 1 364 626 285 550 9.21e-84 273
MS.gene21484.t1 MTR_1g071680 38.342 193 91 5 7 193 7 177 4.65e-31 128
MS.gene21484.t1 MTR_8g043480 48.736 277 119 6 330 598 19 280 1.34e-82 262
MS.gene21484.t1 MTR_7g100070 49.808 261 115 2 366 616 171 425 5.75e-82 266
MS.gene21484.t1 MTR_7g100070 34.091 176 98 4 13 185 11 171 2.26e-25 110
MS.gene21484.t1 MTR_7g100070 49.808 261 115 2 366 616 170 424 6.48e-82 266
MS.gene21484.t1 MTR_7g100070 34.091 176 97 5 13 185 11 170 6.26e-25 108
MS.gene21484.t1 MTR_7g100070 49.808 261 115 2 366 616 211 465 3.04e-81 265
MS.gene21484.t1 MTR_7g100070 34.066 182 101 5 7 185 46 211 2.17e-25 110
MS.gene21484.t1 MTR_8g043480 47.059 289 130 6 330 610 149 422 6.85e-81 262
MS.gene21484.t1 MTR_8g043480 50.667 75 37 0 108 182 12 86 1.97e-16 82.4
MS.gene21484.t1 MTR_8g043480 47.059 289 130 6 330 610 214 487 2.02e-80 263
MS.gene21484.t1 MTR_8g043480 50.667 75 37 0 108 182 77 151 2.57e-16 82.4
MS.gene21484.t1 MTR_8g091360 42.395 309 167 4 319 622 272 574 6.60e-77 256
MS.gene21484.t1 MTR_8g091360 55.072 69 31 0 107 175 142 210 2.12e-18 89.4
MS.gene21484.t1 MTR_1g038810 52.586 232 107 1 370 598 180 411 5.31e-75 247
MS.gene21484.t1 MTR_1g038810 30.460 174 81 4 7 179 4 138 6.49e-16 80.9
MS.gene21484.t1 MTR_1g038810 52.586 232 107 1 370 598 176 407 5.59e-75 247
MS.gene21484.t1 MTR_1g038810 43.529 85 47 1 95 178 49 133 2.25e-14 76.3
MS.gene21484.t1 MTR_6g009260 48.235 255 124 6 351 598 148 401 3.49e-74 245
MS.gene21484.t1 MTR_6g009260 44.156 77 41 1 101 175 51 127 2.54e-15 79.3
MS.gene21484.t1 MTR_6g072010 46.087 230 123 1 370 598 155 384 3.81e-71 235
MS.gene21484.t1 MTR_6g072010 32.800 125 81 2 86 209 28 150 6.37e-15 77.4
MS.gene21484.t1 MTR_6g072010 46.087 230 123 1 370 598 166 395 6.60e-71 235
MS.gene21484.t1 MTR_6g072010 32.800 125 81 2 86 209 39 161 6.85e-15 77.4
MS.gene21484.t1 MTR_8g091360 38.265 196 111 3 319 510 272 461 9.82e-38 146
MS.gene21484.t1 MTR_8g091360 55.072 69 31 0 107 175 142 210 1.20e-18 89.7
MS.gene21484.t1 MTR_6g092670 31.206 282 147 9 367 606 643 919 1.22e-31 132
MS.gene21484.t1 MTR_1g078100 32.472 271 142 9 367 600 328 594 1.23e-31 131
MS.gene21484.t1 MTR_1g078100 32.472 271 142 9 367 600 339 605 1.70e-31 131
MS.gene21484.t1 MTR_1g078100 32.472 271 142 9 367 600 608 874 1.81e-31 131
MS.gene21484.t1 MTR_1g021730 28.521 284 175 13 330 598 46 316 1.93e-19 90.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21484.t1 AT4G18010 55.740 662 231 12 1 619 1 643 0.0 676
MS.gene21484.t1 AT4G18010 54.000 600 216 11 1 559 1 581 0.0 585
MS.gene21484.t1 AT1G34120 41.575 546 254 10 84 611 83 581 7.00e-137 412
MS.gene21484.t1 AT1G34120 38.710 620 293 13 10 611 27 577 2.71e-136 411
MS.gene21484.t1 AT1G34120 41.575 546 253 11 84 611 83 580 4.30e-135 408
MS.gene21484.t1 AT2G32010 36.032 630 324 14 17 626 17 587 1.16e-118 365
MS.gene21484.t1 AT2G32010 36.032 630 324 14 17 626 17 587 1.16e-118 365
MS.gene21484.t1 AT2G32010 36.032 630 324 14 17 626 17 587 1.16e-118 365
MS.gene21484.t1 AT2G32010 36.032 630 324 14 17 626 17 587 1.16e-118 365
MS.gene21484.t1 AT1G34120 56.680 247 103 2 367 611 182 426 4.00e-98 307
MS.gene21484.t1 AT1G71710 41.644 365 164 5 253 613 333 652 4.72e-88 288
MS.gene21484.t1 AT1G71710 40.465 215 97 3 1 193 10 215 1.36e-39 154
MS.gene21484.t1 AT1G71710 41.644 365 164 5 253 613 324 643 5.36e-88 287
MS.gene21484.t1 AT1G71710 40.465 215 97 3 1 193 1 206 1.40e-39 154
MS.gene21484.t1 AT1G05470 48.188 276 139 2 354 626 336 610 8.66e-86 280
MS.gene21484.t1 AT1G05470 32.990 194 116 2 1 194 1 180 7.02e-30 125
MS.gene21484.t1 AT1G05470 48.188 276 139 2 354 626 336 610 8.66e-86 280
MS.gene21484.t1 AT1G05470 32.990 194 116 2 1 194 1 180 7.02e-30 125
MS.gene21484.t1 AT3G63240 51.493 268 127 2 362 626 273 540 7.78e-85 276
MS.gene21484.t1 AT3G63240 35.945 217 99 5 7 214 7 192 7.28e-29 121
MS.gene21484.t1 AT3G63240 51.493 268 127 2 362 626 273 540 7.78e-85 276
MS.gene21484.t1 AT3G63240 35.945 217 99 5 7 214 7 192 7.28e-29 121
MS.gene21484.t1 AT1G34120 34.118 510 251 12 10 501 27 469 9.14e-84 271
MS.gene21484.t1 AT2G37440 51.301 269 126 3 331 598 79 343 2.65e-83 267
MS.gene21484.t1 AT2G37440 39.815 108 39 2 110 191 3 110 6.07e-17 84.0
MS.gene21484.t1 AT2G37440 54.065 246 111 2 354 598 180 424 3.51e-82 267
MS.gene21484.t1 AT2G37440 32.418 182 100 4 8 188 6 165 3.76e-24 106
MS.gene21484.t1 AT2G37440 54.065 246 111 2 354 598 180 424 3.51e-82 267
MS.gene21484.t1 AT2G37440 32.418 182 100 4 8 188 6 165 3.76e-24 106
MS.gene21484.t1 AT5G04980 48.193 249 125 2 358 602 148 396 1.38e-79 258
MS.gene21484.t1 AT5G65090 51.406 249 116 2 355 598 185 433 2.50e-79 259
MS.gene21484.t1 AT5G65090 51.316 76 37 0 104 179 8 83 2.18e-19 92.0
MS.gene21484.t1 AT5G04980 48.583 247 123 2 358 600 183 429 6.28e-79 257
MS.gene21484.t1 AT5G04980 46.269 67 36 0 104 170 7 73 1.22e-13 73.9
MS.gene21484.t1 AT5G04980 48.583 247 123 2 358 600 183 429 6.28e-79 257
MS.gene21484.t1 AT5G04980 46.269 67 36 0 104 170 7 73 1.22e-13 73.9
MS.gene21484.t1 AT2G01900 45.141 319 164 4 304 612 81 398 7.18e-79 256
MS.gene21484.t1 AT2G01900 46.667 75 39 1 107 180 59 133 1.45e-14 76.6
MS.gene21484.t1 AT5G04980 48.583 247 123 2 358 600 212 458 9.34e-79 258
MS.gene21484.t1 AT5G04980 46.269 67 36 0 104 170 36 102 1.15e-13 74.3
MS.gene21484.t1 AT2G01900 45.141 319 164 4 304 612 89 406 1.01e-78 256
MS.gene21484.t1 AT2G01900 46.667 75 39 1 107 180 67 141 1.35e-14 76.6
MS.gene21484.t1 AT5G65090 51.406 249 116 2 355 598 248 496 1.02e-78 259
MS.gene21484.t1 AT5G65090 51.316 76 37 0 104 179 71 146 3.13e-19 92.0
MS.gene21484.t1 AT5G65090 51.406 249 116 2 355 598 248 496 1.02e-78 259
MS.gene21484.t1 AT5G65090 51.316 76 37 0 104 179 71 146 3.13e-19 92.0
MS.gene21484.t1 AT2G01900 44.201 319 158 5 304 612 81 389 1.42e-74 244
MS.gene21484.t1 AT2G01900 46.667 75 39 1 107 180 59 133 1.50e-14 76.6
MS.gene21484.t1 AT1G05630 32.394 284 146 8 367 608 652 931 5.74e-35 142
MS.gene21484.t1 AT1G05630 35.398 226 115 5 367 565 652 873 1.35e-34 140
MS.gene21484.t1 AT2G43900 30.986 284 149 8 365 606 656 934 2.20e-33 137
MS.gene21484.t1 AT2G43900 30.986 284 149 8 365 606 656 934 2.36e-33 137
MS.gene21484.t1 AT2G31830 32.117 274 146 8 367 609 661 925 2.88e-33 137
MS.gene21484.t1 AT2G31830 32.117 274 146 8 367 609 661 925 3.41e-33 137
MS.gene21484.t1 AT1G65580 30.035 283 150 7 367 606 619 896 4.79e-33 136
MS.gene21484.t1 AT1G65580 30.035 283 150 7 367 606 353 630 4.83e-33 135
MS.gene21484.t1 AT2G31830 34.071 226 118 5 367 565 661 882 2.06e-32 134
MS.gene21484.t1 AT1G05630 28.931 318 146 8 367 608 652 965 1.42e-30 129
MS.gene21484.t1 AT1G47510 31.633 196 110 8 403 590 84 263 1.65e-18 86.7
MS.gene21484.t1 AT1G47510 31.633 196 110 8 403 590 146 325 6.64e-18 85.9
MS.gene21484.t1 AT1G47510 36.134 119 64 4 479 590 149 262 1.05e-12 69.3

Find 110 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGATTGCTTCCCATTTC+TGG 0.077647 5.3:-7304979 None:intergenic
TCATCACTAATTTGCATTCT+TGG 0.178641 5.3:-7304075 None:intergenic
CCTGTTGGAGTTGGTCTTAT+GGG 0.192645 5.3:+7305685 MS.gene21484:CDS
ACCTGTTGGAGTTGGTCTTA+TGG 0.206704 5.3:+7305684 MS.gene21484:CDS
GTTTGTTCTCATCTGACTTC+TGG 0.253654 5.3:+7306023 MS.gene21484:CDS
AACGAGAATGCTTTCATATA+TGG 0.255304 5.3:+7305358 MS.gene21484:CDS
TGAGTCCCTTGTGTTCTAAA+TGG 0.278238 5.3:-7304102 None:intergenic
AGATTCGGAGGTTCGGAAAT+TGG 0.279202 5.3:+7306307 MS.gene21484:CDS
GCATCATAGTTCCGGAGATT+TGG 0.281629 5.3:+7305411 MS.gene21484:CDS
CATCATAGTTCCGGAGATTT+GGG 0.307084 5.3:+7305412 MS.gene21484:CDS
TTGCATGTGAGGAAAGTTTA+TGG 0.308983 5.3:+7305223 MS.gene21484:CDS
TCTTGTGCCTCACAGTTTCC+AGG 0.330792 5.3:+7304901 MS.gene21484:intron
GTAAATATCACTTGGTTCTT+CGG 0.331532 5.3:-7304537 None:intergenic
CATTCAGTGGAACTACTTCC+TGG 0.351079 5.3:-7304919 None:intergenic
TCTAACGAATCAACTACTTT+AGG 0.360222 5.3:-7305463 None:intergenic
CTAAGTAGTTCAGCTAGAAT+TGG 0.365345 5.3:+7305325 MS.gene21484:CDS
TTTATGGTATTGATCTTGAT+TGG 0.371531 5.3:+7305239 MS.gene21484:CDS
ATATTCTCAACTCAAATATC+AGG 0.376314 5.3:+7304129 MS.gene21484:CDS
TGGGAATCTATGTATCTGTT+TGG 0.377949 5.3:+7305617 MS.gene21484:CDS
GAAAGTAACATAATTAGTAT+AGG 0.383320 5.3:+7305193 MS.gene21484:CDS
ACCAAGAAAATTGAACTAAC+TGG 0.385102 5.3:-7307129 None:intergenic
TTCATATATGGTGGTGGTGG+TGG 0.386916 5.3:+7305370 MS.gene21484:CDS
ATTTGCATTCTTGGTTGCTT+AGG 0.387840 5.3:-7304066 None:intergenic
TCAGGGTAGCAATTGGATCT+TGG 0.401753 5.3:+7304459 MS.gene21484:intron
CATTGCGTCTAACGGACGTT+CGG 0.403871 5.3:-7305263 None:intergenic
AAACGTTCGCATCATAGTTC+CGG 0.406803 5.3:+7305403 MS.gene21484:CDS
CCATCATCATCTTGGTTCTC+AGG 0.407822 5.3:-7305538 None:intergenic
ATAATACACCTATCCAGAAA+TGG 0.408581 5.3:+7304966 MS.gene21484:CDS
AAAGTAACATAATTAGTATA+GGG 0.408748 5.3:+7305194 MS.gene21484:CDS
CGTGTTGGGCATGTATTTGA+TGG 0.413909 5.3:+7306838 MS.gene21484:CDS
CGCTTAATCCATCATCATCT+TGG 0.418248 5.3:-7305546 None:intergenic
ATTGGATCTTGGAATGTTGC+TGG 0.427032 5.3:+7304470 MS.gene21484:CDS
TTAATTTCATATTTGTAAGT+TGG 0.431471 5.3:-7306889 None:intergenic
TCACTAAAATCATTCACCTT+AGG 0.436230 5.3:-7303898 None:intergenic
CCCATAAGACCAACTCCAAC+AGG 0.442442 5.3:-7305685 None:intergenic
AGTTGGTCTTATGGGCTACA+TGG 0.444671 5.3:+7305693 MS.gene21484:CDS
TTATTCTTCAGGGTAGCAAT+TGG 0.448880 5.3:+7304452 MS.gene21484:intron
CGAATATTGTGGCTAGGAAA+AGG 0.450823 5.3:+7307054 MS.gene21484:CDS
ATTAATTCAGATAGATATGT+TGG 0.451212 5.3:+7306907 MS.gene21484:CDS
GGGAATCTATGTATCTGTTT+GGG 0.451736 5.3:+7305618 MS.gene21484:CDS
CTGAATGCTGGAAATGTACT+AGG 0.452408 5.3:+7304935 MS.gene21484:CDS
TAAGCAATGAATTGCGTGTT+GGG 0.453778 5.3:+7306824 MS.gene21484:CDS
TCGAATCAGTATGTTAGATT+CGG 0.454114 5.3:+7306292 MS.gene21484:CDS
GTATTTGATGGATGGAAAGA+AGG 0.466341 5.3:+7306850 MS.gene21484:CDS
ATTGCTTCCCATTTCTGGAT+AGG 0.468019 5.3:-7304974 None:intergenic
CCACAGCGCGCCACCTTCGC+CGG 0.468038 5.3:+7305048 MS.gene21484:CDS
TCATCTGACTTCTGGTACAA+AGG 0.470086 5.3:+7306031 MS.gene21484:CDS
GTATGTTAGATTCGGAGGTT+CGG 0.473895 5.3:+7306300 MS.gene21484:CDS
AAAGTTTCACCTGTTGGAGT+TGG 0.475998 5.3:+7305676 MS.gene21484:CDS
ATTGCGTCTAACGGACGTTC+GGG 0.477422 5.3:-7305262 None:intergenic
TCGAATTATCAGCAAGCAAA+TGG 0.488062 5.3:+7305594 MS.gene21484:CDS
AATTTGAAAGTTTCACCTGT+TGG 0.489228 5.3:+7305670 MS.gene21484:CDS
TAATACACCTATCCAGAAAT+GGG 0.489685 5.3:+7304967 MS.gene21484:CDS
TGAACTAATGAATTATGATC+AGG 0.491564 5.3:+7306349 MS.gene21484:CDS
GAGAACAAACAAAGCACATA+CGG 0.492200 5.3:-7306010 None:intergenic
ATTGCAATTAATTACCATGC+AGG 0.498674 5.3:-7306964 None:intergenic
TTGGTGAGATTCCAAAAGAA+GGG 0.500872 5.3:+7306926 MS.gene21484:CDS
TATTCTTAATGATGAGCTCA+TGG 0.503474 5.3:+7305135 MS.gene21484:CDS
CAATAACGAGCCCAAATCTC+CGG 0.506916 5.3:-7305422 None:intergenic
CTGACTTCTGGTACAAAGGA+TGG 0.510046 5.3:+7306035 MS.gene21484:CDS
TGCTCAGTATATAAATACTA+AGG 0.510156 5.3:+7304321 MS.gene21484:CDS
GAAGTAGTTCCACTGAATGC+TGG 0.510491 5.3:+7304923 MS.gene21484:CDS
TCATCATTAAGAATATCAAT+TGG 0.511222 5.3:-7305127 None:intergenic
CCGGCGAAGGTGGCGCGCTG+TGG 0.516401 5.3:-7305048 None:intergenic
ATGGCTTAATATTAAGCCTA+AGG 0.517224 5.3:+7303882 MS.gene21484:CDS
CCTGAGAACCAAGATGATGA+TGG 0.520345 5.3:+7305538 MS.gene21484:CDS
GTTGGTGAGATTCCAAAAGA+AGG 0.521146 5.3:+7306925 MS.gene21484:CDS
ATTTGCGACATTGCGTCTAA+CGG 0.523722 5.3:-7305271 None:intergenic
CTAAGCAATGAATTGCGTGT+TGG 0.528172 5.3:+7306823 MS.gene21484:CDS
AGGATCTTGATATTGATGAC+TGG 0.535310 5.3:+7304507 MS.gene21484:CDS
AATAAAGCTCACTCGTGCGA+TGG 0.543502 5.3:-7306149 None:intergenic
ATAAAGCTCACTCGTGCGAT+GGG 0.545204 5.3:-7306148 None:intergenic
GTTCTCAACACCGGCGAAGG+TGG 0.554746 5.3:-7305058 None:intergenic
ATGTATCTGTTTGGGTGCAG+AGG 0.559123 5.3:+7305626 MS.gene21484:CDS
CTTAGTACTCTCCGCAACTT+CGG 0.560287 5.3:-7305307 None:intergenic
GCTTTCATATATGGTGGTGG+TGG 0.560950 5.3:+7305367 MS.gene21484:CDS
TTTGTGTTTGCTATCAGGCT+CGG 0.563076 5.3:-7305023 None:intergenic
TTGGGCATGTATTTGATGGA+TGG 0.569025 5.3:+7306842 MS.gene21484:CDS
AATCAGTATGTTAGATTCGG+AGG 0.570836 5.3:+7306295 MS.gene21484:CDS
TTGATTCAAATCCGAAGTTG+CGG 0.571082 5.3:+7305296 MS.gene21484:CDS
GAAGTTCTCAACACCGGCGA+AGG 0.576277 5.3:-7305061 None:intergenic
GAAACAATGAAGGGAAGAAG+AGG 0.580298 5.3:+7303741 None:intergenic
TATCTGTTTGGGTGCAGAGG+AGG 0.583884 5.3:+7305629 MS.gene21484:CDS
AATTATCAGCAAGCAAATGG+TGG 0.587320 5.3:+7305597 MS.gene21484:CDS
CTTTGACTTGAAACAATGAA+GGG 0.589740 5.3:+7303732 None:intergenic
AGTACATTTCCAGCATTCAG+TGG 0.590823 5.3:-7304932 None:intergenic
GTTGGTCTTATGGGCTACAT+GGG 0.595449 5.3:+7305694 MS.gene21484:CDS
AGAACAAACAAAGCACATAC+GGG 0.598184 5.3:-7306009 None:intergenic
TATTTGATGGATGGAAAGAA+GGG 0.598578 5.3:+7306851 MS.gene21484:CDS
ATCTGAGATGTTATCTGATG+AGG 0.598698 5.3:+7305492 MS.gene21484:CDS
TGTGATCGAATATTGTGGCT+AGG 0.603815 5.3:+7307048 MS.gene21484:CDS
TAGGGAATGATTTGCATGTG+AGG 0.611783 5.3:+7305212 MS.gene21484:CDS
ATTATCAGCAAGCAAATGGT+GGG 0.612348 5.3:+7305598 MS.gene21484:CDS
TACAAAACAAGACACAGAAG+AGG 0.617623 5.3:+7304280 MS.gene21484:CDS
TATGGGCTACATGGGAAACA+AGG 0.618111 5.3:+7305702 MS.gene21484:CDS
TCTGAGATGTTATCTGATGA+GGG 0.618464 5.3:+7305493 MS.gene21484:CDS
GAGAATGCTTTCATATATGG+TGG 0.620832 5.3:+7305361 MS.gene21484:CDS
TTCGGAGGTTCGGAAATTGG+TGG 0.621782 5.3:+7306310 MS.gene21484:CDS
TCAATATCAAGATCCTCAGA+TGG 0.622649 5.3:-7304500 None:intergenic
TGGAAATGTACTAGGAGCAG+AGG 0.643675 5.3:+7304943 MS.gene21484:CDS
AATGCTTTCATATATGGTGG+TGG 0.651242 5.3:+7305364 MS.gene21484:CDS
GCAGAAGAAGTTCTCAACAC+CGG 0.655380 5.3:-7305067 None:intergenic
TGGTGAGATTCCAAAAGAAG+GGG 0.655564 5.3:+7306927 MS.gene21484:CDS
GATAGTCCATTTAGAACACA+AGG 0.664992 5.3:+7304096 MS.gene21484:CDS
GAAACTGAGAGTGAAGATGA+TGG 0.668913 5.3:+7303937 MS.gene21484:CDS
TGCTGGAAGACATCCATCTG+AGG 0.669046 5.3:+7304487 MS.gene21484:CDS
ATATAAATACTAAGGAAGTG+AGG 0.671109 5.3:+7304329 MS.gene21484:CDS
GCGCGACGAAATCACATGCG+AGG 0.683866 5.3:+7305566 MS.gene21484:CDS
GCAGGTGTGATCGAATATTG+TGG 0.699199 5.3:+7307043 MS.gene21484:intron
ATAGTCCATTTAGAACACAA+GGG 0.775380 5.3:+7304097 MS.gene21484:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATTAATTATATAATCT+AGG - chr5.3:7306781-7306800 None:intergenic 10.0%
!! AAAGTAACATAATTAGTATA+GGG + chr5.3:7305194-7305213 MS.gene21484:CDS 15.0%
!! ATAATGATAAATCATAACTT+TGG + chr5.3:7304429-7304448 MS.gene21484:intron 15.0%
!! TTAATTTCATATTTGTAAGT+TGG - chr5.3:7306892-7306911 None:intergenic 15.0%
!! TTATTTCATAAAATTTGCAA+GGG - chr5.3:7306191-7306210 None:intergenic 15.0%
!!! AAATTGTAAATTCTTTTGTT+CGG + chr5.3:7304582-7304601 MS.gene21484:intron 15.0%
!!! CTTTTATTTACATATATGAT+TGG + chr5.3:7305922-7305941 MS.gene21484:intron 15.0%
!! AAGTTATTTACAGAAAACTT+TGG - chr5.3:7304869-7304888 None:intergenic 20.0%
!! ACTAATTCTTAAAACAACTT+CGG - chr5.3:7304817-7304836 None:intergenic 20.0%
!! ATAAAATTATATATGCATGC+AGG + chr5.3:7307025-7307044 MS.gene21484:intron 20.0%
!! ATGATCATTCAAAATAATCA+TGG - chr5.3:7303807-7303826 None:intergenic 20.0%
!! ATTAATTCAGATAGATATGT+TGG + chr5.3:7306907-7306926 MS.gene21484:CDS 20.0%
!! CCTAAACTTGAATAATAAAA+TGG + chr5.3:7304687-7304706 MS.gene21484:intron 20.0%
!! CTTATTTCATAAAATTTGCA+AGG - chr5.3:7306192-7306211 None:intergenic 20.0%
!! GAAAGTAACATAATTAGTAT+AGG + chr5.3:7305193-7305212 MS.gene21484:CDS 20.0%
!! TAGATAACAAATTATAGATG+TGG - chr5.3:7306689-7306708 None:intergenic 20.0%
!! TCAAATTTACATAGTAAGAA+AGG - chr5.3:7306604-7306623 None:intergenic 20.0%
!! TCAAGTAAAATAAAAGGTTT+GGG - chr5.3:7306484-7306503 None:intergenic 20.0%
!! TCATCATTAAGAATATCAAT+TGG - chr5.3:7305130-7305149 None:intergenic 20.0%
!! TTCAAGTAAAATAAAAGGTT+TGG - chr5.3:7306485-7306504 None:intergenic 20.0%
!!! AACCTTTTATTTTACTTGAA+TGG + chr5.3:7306485-7306504 MS.gene21484:intron 20.0%
!!! ACAACCTTTTATCTTATTAT+AGG - chr5.3:7306555-7306574 None:intergenic 20.0%
!!! ACCTTTTATTTTACTTGAAT+GGG + chr5.3:7306486-7306505 MS.gene21484:intron 20.0%
!!! AGACCAAGTTTAAAATATTA+AGG - chr5.3:7306427-7306446 None:intergenic 20.0%
!!! CAAGTGATATTTACATTTTT+GGG + chr5.3:7304546-7304565 MS.gene21484:CDS 20.0%
!!! CCATTTTATTATTCAAGTTT+AGG - chr5.3:7304690-7304709 None:intergenic 20.0%
!!! CTTTTATCTTATTATAGGTA+GGG - chr5.3:7306550-7306569 None:intergenic 20.0%
!!! GACCAAGTTTAAAATATTAA+GGG - chr5.3:7306426-7306445 None:intergenic 20.0%
!!! GACTATGAATATTAATTTGT+TGG + chr5.3:7306995-7307014 MS.gene21484:intron 20.0%
!!! TCAAATCACAATTCTAAAAA+TGG - chr5.3:7304215-7304234 None:intergenic 20.0%
!!! TCAGATGAATCTTTTAAAAA+GGG + chr5.3:7304256-7304275 MS.gene21484:intron 20.0%
!!! TTCAGATGAATCTTTTAAAA+AGG + chr5.3:7304255-7304274 MS.gene21484:intron 20.0%
!!! TTCCCTTAATATTTTAAACT+TGG + chr5.3:7306421-7306440 MS.gene21484:intron 20.0%
!!! TTCTTTCTTTTTCATTGAAA+TGG - chr5.3:7304167-7304186 None:intergenic 20.0%
!!! TTGATATTTTATTCCTCATA+AGG + chr5.3:7306620-7306639 MS.gene21484:intron 20.0%
! ACCCATTCAAGTAAAATAAA+AGG - chr5.3:7306490-7306509 None:intergenic 25.0%
! ACTCATAGTTTACTGATAAA+TGG + chr5.3:7304609-7304628 MS.gene21484:intron 25.0%
! ATAACTTTGGTTATTCTTCA+GGG + chr5.3:7304442-7304461 MS.gene21484:intron 25.0%
! ATAAGTTAACACAAGTTGTT+AGG - chr5.3:7306222-7306241 None:intergenic 25.0%
! ATATAAATACTAAGGAAGTG+AGG + chr5.3:7304329-7304348 MS.gene21484:CDS 25.0%
! ATATTCTCAACTCAAATATC+AGG + chr5.3:7304129-7304148 MS.gene21484:CDS 25.0%
! ATGCTATACTATACATAACT+AGG - chr5.3:7304367-7304386 None:intergenic 25.0%
! CCAAAAATGTAAATATCACT+TGG - chr5.3:7304548-7304567 None:intergenic 25.0%
! CCTACCTATAATAAGATAAA+AGG + chr5.3:7306548-7306567 MS.gene21484:intron 25.0%
! CTCATAGTTTACTGATAAAT+GGG + chr5.3:7304610-7304629 MS.gene21484:intron 25.0%
! CTGTAAATAACTTTCAATTG+TGG + chr5.3:7304876-7304895 MS.gene21484:intron 25.0%
! GAGAAAATGATATTTGATCA+CGG - chr5.3:7304761-7304780 None:intergenic 25.0%
! GAGATGTTTCACATTAAATT+AGG + chr5.3:7305728-7305747 MS.gene21484:intron 25.0%
! TGAACTAATGAATTATGATC+AGG + chr5.3:7306349-7306368 MS.gene21484:CDS 25.0%
! TGCTCAGTATATAAATACTA+AGG + chr5.3:7304321-7304340 MS.gene21484:CDS 25.0%
! TTCCACATTAATTGTTAACT+AGG + chr5.3:7305759-7305778 MS.gene21484:intron 25.0%
!! AAAGTTATGCATATTTTGCA+AGG - chr5.3:7306396-7306415 None:intergenic 25.0%
!! CCAAGTGATATTTACATTTT+TGG + chr5.3:7304545-7304564 MS.gene21484:CDS 25.0%
!! CCTTTTATCTTATTATAGGT+AGG - chr5.3:7306551-7306570 None:intergenic 25.0%
!! TCAAGGGTAATTTTGTAAAT+TGG + chr5.3:7304642-7304661 MS.gene21484:intron 25.0%
!! TGATTTTATTGTAGGCTTTT+TGG + chr5.3:7303839-7303858 MS.gene21484:intron 25.0%
!!! TGCTGATTTGATTTTATTGT+AGG + chr5.3:7303831-7303850 MS.gene21484:intron 25.0%
!!! TTTATGGTATTGATCTTGAT+TGG + chr5.3:7305239-7305258 MS.gene21484:CDS 25.0%
AAAAATTGACCATCTTCATC+AGG - chr5.3:7307237-7307256 None:intergenic 30.0%
AACGAGAATGCTTTCATATA+TGG + chr5.3:7305358-7305377 MS.gene21484:CDS 30.0%
AATAGCAATAGTTCCTTATG+AGG - chr5.3:7306636-7306655 None:intergenic 30.0%
AATTTGAAAGTTTCACCTGT+TGG + chr5.3:7305670-7305689 MS.gene21484:CDS 30.0%
ACCAAGAAAATTGAACTAAC+TGG - chr5.3:7307132-7307151 None:intergenic 30.0%
AGCCTAGTTAACAATTAATG+TGG - chr5.3:7305764-7305783 None:intergenic 30.0%
AGTAAAATAAAAGGTTTGGG+TGG - chr5.3:7306481-7306500 None:intergenic 30.0%
ATAATACACCTATCCAGAAA+TGG + chr5.3:7304966-7304985 MS.gene21484:CDS 30.0%
ATGGCTTAATATTAAGCCTA+AGG + chr5.3:7303882-7303901 MS.gene21484:CDS 30.0%
ATTGCAATTAATTACCATGC+AGG - chr5.3:7306967-7306986 None:intergenic 30.0%
CATAACTTTGGTTATTCTTC+AGG + chr5.3:7304441-7304460 MS.gene21484:intron 30.0%
CTTCCATTGTGATGAAAAAA+TGG + chr5.3:7303863-7303882 MS.gene21484:CDS 30.0%
TAATACACCTATCCAGAAAT+GGG + chr5.3:7304967-7304986 MS.gene21484:CDS 30.0%
TATTCTTAATGATGAGCTCA+TGG + chr5.3:7305135-7305154 MS.gene21484:CDS 30.0%
TCACTAAAATCATTCACCTT+AGG - chr5.3:7303901-7303920 None:intergenic 30.0%
TCGAATCAGTATGTTAGATT+CGG + chr5.3:7306292-7306311 MS.gene21484:CDS 30.0%
TCTAACGAATCAACTACTTT+AGG - chr5.3:7305466-7305485 None:intergenic 30.0%
! ACCAGTTAGTTCAATTTTCT+TGG + chr5.3:7307128-7307147 MS.gene21484:CDS 30.0%
! ATAGTCCATTTAGAACACAA+GGG + chr5.3:7304097-7304116 MS.gene21484:CDS 30.0%
! GTAAATATCACTTGGTTCTT+CGG - chr5.3:7304540-7304559 None:intergenic 30.0%
! TATTTGATGGATGGAAAGAA+GGG + chr5.3:7306851-7306870 MS.gene21484:CDS 30.0%
! TCATCACTAATTTGCATTCT+TGG - chr5.3:7304078-7304097 None:intergenic 30.0%
! TTGTTAACAGTCAGATTTTC+TGG + chr5.3:7306252-7306271 MS.gene21484:intron 30.0%
!!! AAGCCATTTTTTCATCACAA+TGG - chr5.3:7303869-7303888 None:intergenic 30.0%
!!! CATTTTTTCATCACAATGGA+AGG - chr5.3:7303865-7303884 None:intergenic 30.0%
!!! TATAGGTAGGGTTTTTTATG+TGG - chr5.3:7306538-7306557 None:intergenic 30.0%
AAGAAGAGGAAAAAGATCAG+AGG + chr5.3:7303755-7303774 MS.gene21484:CDS 35.0%
AATACTAAGGAAGTGAGGTA+TGG + chr5.3:7304334-7304353 MS.gene21484:intron 35.0%
AATCAGTATGTTAGATTCGG+AGG + chr5.3:7306295-7306314 MS.gene21484:CDS 35.0%
AATGCTTTCATATATGGTGG+TGG + chr5.3:7305364-7305383 MS.gene21484:CDS 35.0%
AATTATCAGCAAGCAAATGG+TGG + chr5.3:7305597-7305616 MS.gene21484:CDS 35.0%
ACACATTTCTCAATGATGCA+GGG + chr5.3:7305954-7305973 MS.gene21484:intron 35.0%
AGAACAAACAAAGCACATAC+GGG - chr5.3:7306012-7306031 None:intergenic 35.0%
ATTATCAGCAAGCAAATGGT+GGG + chr5.3:7305598-7305617 MS.gene21484:CDS 35.0%
ATTTGCATTCTTGGTTGCTT+AGG - chr5.3:7304069-7304088 None:intergenic 35.0%
CTAAGTAGTTCAGCTAGAAT+TGG + chr5.3:7305325-7305344 MS.gene21484:CDS 35.0%
GAGAACAAACAAAGCACATA+CGG - chr5.3:7306013-7306032 None:intergenic 35.0%
GAGAATGCTTTCATATATGG+TGG + chr5.3:7305361-7305380 MS.gene21484:CDS 35.0%
GGGAATCTATGTATCTGTTT+GGG + chr5.3:7305618-7305637 MS.gene21484:CDS 35.0%
TAAGCAATGAATTGCGTGTT+GGG + chr5.3:7306824-7306843 MS.gene21484:CDS 35.0%
TAATGATTGCTTCCCATTTC+TGG - chr5.3:7304982-7305001 None:intergenic 35.0%
TACAAAACAAGACACAGAAG+AGG + chr5.3:7304280-7304299 MS.gene21484:CDS 35.0%
TCAATATCAAGATCCTCAGA+TGG - chr5.3:7304503-7304522 None:intergenic 35.0%
TCGAATTATCAGCAAGCAAA+TGG + chr5.3:7305594-7305613 MS.gene21484:CDS 35.0%
TCTTCATCAGGAAAAATCTC+AGG - chr5.3:7307225-7307244 None:intergenic 35.0%
TGGGAATCTATGTATCTGTT+TGG + chr5.3:7305617-7305636 MS.gene21484:CDS 35.0%
TTACTGATAAATGGGCAGTA+CGG + chr5.3:7304618-7304637 MS.gene21484:intron 35.0%
TTATTCTTCAGGGTAGCAAT+TGG + chr5.3:7304452-7304471 MS.gene21484:intron 35.0%
TTGATTCAAATCCGAAGTTG+CGG + chr5.3:7305296-7305315 MS.gene21484:CDS 35.0%
TTGCATGTGAGGAAAGTTTA+TGG + chr5.3:7305223-7305242 MS.gene21484:CDS 35.0%
TTGGTGAGATTCCAAAAGAA+GGG + chr5.3:7306926-7306945 MS.gene21484:CDS 35.0%
! AATTGGTGGCTCAAAAAAAG+TGG + chr5.3:7306324-7306343 MS.gene21484:CDS 35.0%
! AGGATCTTGATATTGATGAC+TGG + chr5.3:7304507-7304526 MS.gene21484:CDS 35.0%
! ATCTGAGATGTTATCTGATG+AGG + chr5.3:7305492-7305511 MS.gene21484:CDS 35.0%
! GAGATTTTTCCTGATGAAGA+TGG + chr5.3:7307225-7307244 MS.gene21484:CDS 35.0%
! GATAGTCCATTTAGAACACA+AGG + chr5.3:7304096-7304115 MS.gene21484:CDS 35.0%
! GTATTTGATGGATGGAAAGA+AGG + chr5.3:7306850-7306869 MS.gene21484:CDS 35.0%
! TCTGAGATGTTATCTGATGA+GGG + chr5.3:7305493-7305512 MS.gene21484:CDS 35.0%
! TGCATATTTTGCAAGGTTTG+TGG - chr5.3:7306389-7306408 None:intergenic 35.0%
!!! AACAGTCAGATTTTCTGGTT+CGG + chr5.3:7306257-7306276 MS.gene21484:intron 35.0%
!!! CTTTTTTTCTCCCCTTCTTT+TGG - chr5.3:7306940-7306959 None:intergenic 35.0%
AAACGTTCGCATCATAGTTC+CGG + chr5.3:7305403-7305422 MS.gene21484:CDS 40.0%
AAAGTTTCACCTGTTGGAGT+TGG + chr5.3:7305676-7305695 MS.gene21484:CDS 40.0%
AGAAAAAAAGAGCTCCTGCA+TGG + chr5.3:7306950-7306969 MS.gene21484:CDS 40.0%
AGTACATTTCCAGCATTCAG+TGG - chr5.3:7304935-7304954 None:intergenic 40.0%
ATATCACTAGTGCACGAGTT+TGG - chr5.3:7305894-7305913 None:intergenic 40.0%
ATTGGATCTTGGAATGTTGC+TGG + chr5.3:7304470-7304489 MS.gene21484:CDS 40.0%
ATTTGCGACATTGCGTCTAA+CGG - chr5.3:7305274-7305293 None:intergenic 40.0%
CATCATAGTTCCGGAGATTT+GGG + chr5.3:7305412-7305431 MS.gene21484:CDS 40.0%
CGAATATTGTGGCTAGGAAA+AGG + chr5.3:7307054-7307073 MS.gene21484:CDS 40.0%
CGCTTAATCCATCATCATCT+TGG - chr5.3:7305549-7305568 None:intergenic 40.0%
CTAAGCAATGAATTGCGTGT+TGG + chr5.3:7306823-7306842 MS.gene21484:CDS 40.0%
CTCAACTCAAATATCAGGCA+AGG + chr5.3:7304134-7304153 MS.gene21484:intron 40.0%
CTGAATGCTGGAAATGTACT+AGG + chr5.3:7304935-7304954 MS.gene21484:CDS 40.0%
GAAACTGAGAGTGAAGATGA+TGG + chr5.3:7303937-7303956 MS.gene21484:CDS 40.0%
GACACATTTCTCAATGATGC+AGG + chr5.3:7305953-7305972 MS.gene21484:intron 40.0%
GTATGTTAGATTCGGAGGTT+CGG + chr5.3:7306300-7306319 MS.gene21484:CDS 40.0%
GTTTGTTCTCATCTGACTTC+TGG + chr5.3:7306023-7306042 MS.gene21484:CDS 40.0%
TCATCTGACTTCTGGTACAA+AGG + chr5.3:7306031-7306050 MS.gene21484:CDS 40.0%
TGGTGAGATTCCAAAAGAAG+GGG + chr5.3:7306927-7306946 MS.gene21484:CDS 40.0%
TGTGATCGAATATTGTGGCT+AGG + chr5.3:7307048-7307067 MS.gene21484:CDS 40.0%
TTGGGCATGTATTTGATGGA+TGG + chr5.3:7306842-7306861 MS.gene21484:CDS 40.0%
! ATTGCTTCCCATTTCTGGAT+AGG - chr5.3:7304977-7304996 None:intergenic 40.0%
! GTTGGTGAGATTCCAAAAGA+AGG + chr5.3:7306925-7306944 MS.gene21484:CDS 40.0%
! TAGGGAATGATTTGCATGTG+AGG + chr5.3:7305212-7305231 MS.gene21484:CDS 40.0%
! TGAGTCCCTTGTGTTCTAAA+TGG - chr5.3:7304105-7304124 None:intergenic 40.0%
!! TTCTGAAGTCGTTCTGTAGT+CGG + chr5.3:7304710-7304729 MS.gene21484:intron 40.0%
!! TTTGTGTTTGCTATCAGGCT+CGG - chr5.3:7305026-7305045 None:intergenic 40.0%
!!! TGGCTTTTGTGTTTGCTATC+AGG - chr5.3:7305031-7305050 None:intergenic 40.0%
AAATGGGCAGTACGGTTCAA+GGG + chr5.3:7304626-7304645 MS.gene21484:intron 45.0%
AATAAAGCTCACTCGTGCGA+TGG - chr5.3:7306152-7306171 None:intergenic 45.0%
ACTACTTCCTGGAAACTGTG+AGG - chr5.3:7304911-7304930 None:intergenic 45.0%
AGATTCGGAGGTTCGGAAAT+TGG + chr5.3:7306307-7306326 MS.gene21484:CDS 45.0%
ATAAAGCTCACTCGTGCGAT+GGG - chr5.3:7306151-7306170 None:intergenic 45.0%
ATGTATCTGTTTGGGTGCAG+AGG + chr5.3:7305626-7305645 MS.gene21484:CDS 45.0%
CAATAACGAGCCCAAATCTC+CGG - chr5.3:7305425-7305444 None:intergenic 45.0%
CATTCAGTGGAACTACTTCC+TGG - chr5.3:7304922-7304941 None:intergenic 45.0%
CCTGAGAACCAAGATGATGA+TGG + chr5.3:7305538-7305557 MS.gene21484:CDS 45.0%
CGTGTTGGGCATGTATTTGA+TGG + chr5.3:7306838-7306857 MS.gene21484:CDS 45.0%
CTGACTTCTGGTACAAAGGA+TGG + chr5.3:7306035-7306054 MS.gene21484:CDS 45.0%
CTTAGTACTCTCCGCAACTT+CGG - chr5.3:7305310-7305329 None:intergenic 45.0%
GAAGTAGTTCCACTGAATGC+TGG + chr5.3:7304923-7304942 MS.gene21484:CDS 45.0%
GCAGAAGAAGTTCTCAACAC+CGG - chr5.3:7305070-7305089 None:intergenic 45.0%
GCAGGTGTGATCGAATATTG+TGG + chr5.3:7307043-7307062 MS.gene21484:intron 45.0%
GCATCATAGTTCCGGAGATT+TGG + chr5.3:7305411-7305430 MS.gene21484:CDS 45.0%
TAAATGGGCAGTACGGTTCA+AGG + chr5.3:7304625-7304644 MS.gene21484:intron 45.0%
TCAGGGTAGCAATTGGATCT+TGG + chr5.3:7304459-7304478 MS.gene21484:intron 45.0%
TGGAAATGTACTAGGAGCAG+AGG + chr5.3:7304943-7304962 MS.gene21484:CDS 45.0%
! CCATCATCATCTTGGTTCTC+AGG - chr5.3:7305541-7305560 None:intergenic 45.0%
! TATGGGCTACATGGGAAACA+AGG + chr5.3:7305702-7305721 MS.gene21484:CDS 45.0%
!! ACCTGTTGGAGTTGGTCTTA+TGG + chr5.3:7305684-7305703 MS.gene21484:CDS 45.0%
!! AGTTGGTCTTATGGGCTACA+TGG + chr5.3:7305693-7305712 MS.gene21484:CDS 45.0%
!! CCTGTTGGAGTTGGTCTTAT+GGG + chr5.3:7305685-7305704 MS.gene21484:CDS 45.0%
!! GCTTTCATATATGGTGGTGG+TGG + chr5.3:7305367-7305386 MS.gene21484:CDS 45.0%
!! GTTGGTCTTATGGGCTACAT+GGG + chr5.3:7305694-7305713 MS.gene21484:CDS 45.0%
!! TTCATATATGGTGGTGGTGG+TGG + chr5.3:7305370-7305389 MS.gene21484:CDS 45.0%
CCCATAAGACCAACTCCAAC+AGG - chr5.3:7305688-7305707 None:intergenic 50.0%
CTCTTTAGCCTCGCTGACAA+AGG - chr5.3:7305868-7305887 None:intergenic 50.0%
CTTTGTCAGCGAGGCTAAAG+AGG + chr5.3:7305866-7305885 MS.gene21484:intron 50.0%
TATCTGTTTGGGTGCAGAGG+AGG + chr5.3:7305629-7305648 MS.gene21484:CDS 50.0%
TCTACTGACCTTTGTCAGCG+AGG + chr5.3:7305857-7305876 MS.gene21484:intron 50.0%
TCTTGTGCCTCACAGTTTCC+AGG + chr5.3:7304901-7304920 MS.gene21484:intron 50.0%
TGCTGGAAGACATCCATCTG+AGG + chr5.3:7304487-7304506 MS.gene21484:CDS 50.0%
TTCGGAGGTTCGGAAATTGG+TGG + chr5.3:7306310-7306329 MS.gene21484:CDS 50.0%
! ATTGCGTCTAACGGACGTTC+GGG - chr5.3:7305265-7305284 None:intergenic 50.0%
! CATTGCGTCTAACGGACGTT+CGG - chr5.3:7305266-7305285 None:intergenic 50.0%
!! ATATATGGTGGTGGTGGTGG+AGG + chr5.3:7305373-7305392 MS.gene21484:CDS 50.0%
CGTTCTGTAGTCGGAGACGT+AGG + chr5.3:7304719-7304738 MS.gene21484:intron 55.0%
GAAGTTCTCAACACCGGCGA+AGG - chr5.3:7305064-7305083 None:intergenic 55.0%
GCGCGACGAAATCACATGCG+AGG + chr5.3:7305566-7305585 MS.gene21484:CDS 60.0%
GTTCTCAACACCGGCGAAGG+TGG - chr5.3:7305061-7305080 None:intergenic 60.0%
!! TATGGTGGTGGTGGTGGAGG+TGG + chr5.3:7305376-7305395 MS.gene21484:CDS 60.0%
CCACAGCGCGCCACCTTCGC+CGG + chr5.3:7305048-7305067 MS.gene21484:CDS 75.0%
! CCGGCGAAGGTGGCGCGCTG+TGG - chr5.3:7305051-7305070 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 7303747 7307260 7303747 ID=MS.gene21484
chr5.3 mRNA 7303747 7307260 7303747 ID=MS.gene21484.t1;Parent=MS.gene21484
chr5.3 exon 7303747 7303776 7303747 ID=MS.gene21484.t1.exon1;Parent=MS.gene21484.t1
chr5.3 CDS 7303747 7303776 7303747 ID=cds.MS.gene21484.t1;Parent=MS.gene21484.t1
chr5.3 exon 7303853 7303958 7303853 ID=MS.gene21484.t1.exon2;Parent=MS.gene21484.t1
chr5.3 CDS 7303853 7303958 7303853 ID=cds.MS.gene21484.t1;Parent=MS.gene21484.t1
chr5.3 exon 7304058 7304150 7304058 ID=MS.gene21484.t1.exon3;Parent=MS.gene21484.t1
chr5.3 CDS 7304058 7304150 7304058 ID=cds.MS.gene21484.t1;Parent=MS.gene21484.t1
chr5.3 exon 7304260 7304350 7304260 ID=MS.gene21484.t1.exon4;Parent=MS.gene21484.t1
chr5.3 CDS 7304260 7304350 7304260 ID=cds.MS.gene21484.t1;Parent=MS.gene21484.t1
chr5.3 exon 7304463 7304567 7304463 ID=MS.gene21484.t1.exon5;Parent=MS.gene21484.t1
chr5.3 CDS 7304463 7304567 7304463 ID=cds.MS.gene21484.t1;Parent=MS.gene21484.t1
chr5.3 exon 7304916 7305723 7304916 ID=MS.gene21484.t1.exon6;Parent=MS.gene21484.t1
chr5.3 CDS 7304916 7305723 7304916 ID=cds.MS.gene21484.t1;Parent=MS.gene21484.t1
chr5.3 exon 7305975 7306159 7305975 ID=MS.gene21484.t1.exon7;Parent=MS.gene21484.t1
chr5.3 CDS 7305975 7306159 7305975 ID=cds.MS.gene21484.t1;Parent=MS.gene21484.t1
chr5.3 exon 7306262 7306370 7306262 ID=MS.gene21484.t1.exon8;Parent=MS.gene21484.t1
chr5.3 CDS 7306262 7306370 7306262 ID=cds.MS.gene21484.t1;Parent=MS.gene21484.t1
chr5.3 exon 7306823 7306971 7306823 ID=MS.gene21484.t1.exon9;Parent=MS.gene21484.t1
chr5.3 CDS 7306823 7306971 7306823 ID=cds.MS.gene21484.t1;Parent=MS.gene21484.t1
chr5.3 exon 7307047 7307260 7307047 ID=MS.gene21484.t1.exon10;Parent=MS.gene21484.t1
chr5.3 CDS 7307047 7307260 7307047 ID=cds.MS.gene21484.t1;Parent=MS.gene21484.t1
Gene Sequence

>MS.gene21484

ATGAAGGGAAGAAGAGGAAAAAGATCAGAGGTAAACTTTATAACATTCTTTGAAGAACCATGATTATTTTGAATGATCATAAGTTGCTGATTTGATTTTATTGTAGGCTTTTTGGCCTTCCATTGTGATGAAAAAATGGCTTAATATTAAGCCTAAGGTGAATGATTTTAGTGAAGATGAAGTTGATACTGAAACTGAGAGTGAAGATGATGGTATATTACTATGCAAATGATTATTCTATTGTATTTGTATACTTCTTCTTTTTTTTTTCTTTCTTTTTTCAGTTTTTGATTCTTATAATTATGATACAGTTTGTTCTCCTAAGCAACCAAGAATGCAAATTAGTGATGATAGTCCATTTAGAACACAAGGGACTCAATCTATATTCTCAACTCAAATATCAGGCAAGGATTCATTCCATTTCAATGAAAAAGAAAGAAAAAAAAAAGTTAATTTTGATAAATTCCATTTTTAGAATTGTGATTTGATGATTTCATATTTGTAATTATTCAGATGAATCTTTTAAAAAGGGATACAAAACAAGACACAGAAGAGGAAAATCAGAAACTCTGCGTGCTCAGTATATAAATACTAAGGAAGTGAGGTATGGTTTGCAACCTAGTTATGTATAGTATAGCATATCATAGTGTTAATTAGTAATTAATTTAATGATAGCAATGAAATAATGATAAATCATAACTTTGGTTATTCTTCAGGGTAGCAATTGGATCTTGGAATGTTGCTGGAAGACATCCATCTGAGGATCTTGATATTGATGACTGGATTTGTGCCGAAGAACCAAGTGATATTTACATTTTTGGGTGAGTAGTTCATGAAATTGTAAATTCTTTTGTTCGGTATAACTCATAGTTTACTGATAAATGGGCAGTACGGTTCAAGGGTAATTTTGTAAATTGGACTGTAGTATGTACTCTATGATCCTAAACTTGAATAATAAAATGGTTCTGAAGTCGTTCTGTAGTCGGAGACGTAGGCATAATTGATCGAACTCCGTGATCAAATATCATTTTCTCTTTTTTTATGTTTTCGTATCTTTTTATTTTGAGCCGAAGTTGTTTTAAGAATTAGTATTTCTAGTCAGTCTTTATGTTATGTTTACCAAAGTTTTCTGTAAATAACTTTCAATTGTGGTGTCTTGTGCCTCACAGTTTCCAGGAAGTAGTTCCACTGAATGCTGGAAATGTACTAGGAGCAGAGGATAATACACCTATCCAGAAATGGGAAGCAATCATTAGAAGATCTTTAAACAAATCTTCCGAGCCTGATAGCAAACACAAAAGCCACAGCGCGCCACCTTCGCCGGTGTTGAGAACTTCTTCTGCTGCTGATGTTCTAGCTGATAATATAGATGCTGCTAATCCAATTGATATTCTTAATGATGAGCTCATGGAAAATGTTGACAAATATGATCTGCAACAGCTCGAAGAAAGTAACATAATTAGTATAGGGAATGATTTGCATGTGAGGAAAGTTTATGGTATTGATCTTGATTGGCCCGAACGTCCGTTAGACGCAATGTCGCAAATTGTTGATTCAAATCCGAAGTTGCGGAGAGTACTAAGTAGTTCAGCTAGAATTGGCTTTGACTTGAACGAGAATGCTTTCATATATGGTGGTGGTGGTGGAGGTGGATTGAAACGTTCGCATCATAGTTCCGGAGATTTGGGCTCGTTATTGAAAGAGCAACAAGTTATACCTAAAGTAGTTGATTCGTTAGATGATGTATCTGAGATGTTATCTGATGAGGGTGATGATGCTTTTATTGAATTACCTGAGAACCAAGATGATGATGGATTAAGCGCGACGAAATCACATGCGAGGTATGTTCGAATTATCAGCAAGCAAATGGTGGGAATCTATGTATCTGTTTGGGTGCAGAGGAGGCTGAGAAGACACATTAATAATTTGAAAGTTTCACCTGTTGGAGTTGGTCTTATGGGCTACATGGGAAACAAGGTATGAGATGTTTCACATTAAATTAGGCTTCATAATTCCACATTAATTGTTAACTAGGCTTCATAAACTTTTCAGCATTCATTTACAGTATAATAAATATGTGCTTCATGCATTTTATGATCAGTTCAATTCATCTACTGACCTTTGTCAGCGAGGCTAAAGAGGATCCAAACTCGTGCACTAGTGATATAAAATTTTCTTTTATTTACATATATGATTGGTTCTGATAGACACATTTCTCAATGATGCAGGGTTCTGTTTCGATAAGCATGTCACTCTTTCAGTCCCGTATGTGCTTTGTTTGTTCTCATCTGACTTCTGGTACAAAGGATGGAGCTGAACAAAGACGAAACTCAGATGTTAATGAAATTCTACGACGCACTTGTTTCTCGTCTGTCTTTGCTACAGATCAAGCGCTAACAATCCCATCGCACGAGTGAGCTTTATTATATCGTCAAAATTTTCCCTTGCAAATTTTATGAAATAAGTATTTTTCCTAACAACTTGTGTTAACTTATGTTTTGTTTATTGTTAACAGTCAGATTTTCTGGTTCGGAGATTTGAATTATCGAATCAGTATGTTAGATTCGGAGGTTCGGAAATTGGTGGCTCAAAAAAAGTGGAATGAACTAATGAATTATGATCAGGTAAGACTTGTGAATCCACAAACCTTGCAAAATATGCATAACTTTAATCTTTCCCTTAATATTTTAAACTTGGTCTCATAAAAAACTTTATCTTATCTACTAACTCTCCACCCAAACCTTTTATTTTACTTGAATGGGTATGTAAAGTATGTCAAAATAGTACACCACATAAAAAACCCTACCTATAATAAGATAAAAGGTTGTTGATATTTTATTTTTCATATACTTATCCTTTCTTACTATGTAAATTTGATATTTTATTCCTCATAAGGAACTATTGCTATTATTTTTTTGACAATACAAGTAACAATTTTACCACATCTATAATTTGTTATCTATGTGCATATAGTATCAACTATTATAATTGTAACATACAAGTGTACTTATTTATTTATGTTCTGTGTTGTCCTAGATTATATAATTAATTTCTAATTAGTCATTACTTTATGCAGCTAAGCAATGAATTGCGTGTTGGGCATGTATTTGATGGATGGAAAGAAGGGTTGATAAACTTTGCACCAACTTACAAATATGAAATTAATTCAGATAGATATGTTGGTGAGATTCCAAAAGAAGGGGAGAAAAAAAGAGCTCCTGCATGGTAATTAATTGCAATATTTATTAGACTATGAATATTAATTTGTTGGTTTTATAATAAAATTATATATGCATGCAGGTGTGATCGAATATTGTGGCTAGGAAAAGGAATAAAACAACTAAAATATGAACGTGCAGAAATTAAGCTCTCAGATCATAGACCAGTTAGTTCAATTTTCTTGGTTGAAGTTGAAGTATTTGATCATCGCAAATTAAGAAGAGCACTAAATTTCACTAATACTGCTGCAGTACATCCTGAGATTTTTCCTGATGAAGATGGTCAATTTTTCTAA
Protein sequence

>MS.gene21484.t1

MKGRRGKRSEAFWPSIVMKKWLNIKPKVNDFSEDEVDTETESEDDVCSPKQPRMQISDDSPFRTQGTQSIFSTQISDESFKKGYKTRHRRGKSETLRAQYINTKEVRVAIGSWNVAGRHPSEDLDIDDWICAEEPSDIYIFGFQEVVPLNAGNVLGAEDNTPIQKWEAIIRRSLNKSSEPDSKHKSHSAPPSPVLRTSSAADVLADNIDAANPIDILNDELMENVDKYDLQQLEESNIISIGNDLHVRKVYGIDLDWPERPLDAMSQIVDSNPKLRRVLSSSARIGFDLNENAFIYGGGGGGGLKRSHHSSGDLGSLLKEQQVIPKVVDSLDDVSEMLSDEGDDAFIELPENQDDDGLSATKSHARYVRIISKQMVGIYVSVWVQRRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRMCFVCSHLTSGTKDGAEQRRNSDVNEILRRTCFSSVFATDQALTIPSHDQIFWFGDLNYRISMLDSEVRKLVAQKKWNELMNYDQLSNELRVGHVFDGWKEGLINFAPTYKYEINSDRYVGEIPKEGEKKRAPAWCDRILWLGKGIKQLKYERAEIKLSDHRPVSSIFLVEVEVFDHRKLRRALNFTNTAAVHPEIFPDEDGQFF