Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21490.t1 | XP_003611434.1 | 99.3 | 138 | 1 | 0 | 60 | 197 | 1 | 138 | 2.10E-70 | 275.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21490.t1 | Q9AST6 | 67.6 | 136 | 43 | 1 | 60 | 194 | 1 | 136 | 6.1e-47 | 188.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21490.t1 | G7JZT8 | 99.3 | 138 | 1 | 0 | 60 | 197 | 1 | 138 | 1.5e-70 | 275.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049653 | MS.gene21490 | 0.803144 | 4.01E-49 | -1.69E-46 |
| MS.gene051241 | MS.gene21490 | 0.823187 | 1.59E-53 | -1.69E-46 |
| MS.gene057079 | MS.gene21490 | 0.80574 | 1.15E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene21490 | 0.814017 | 1.91E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21490.t1 | MTR_5g013980 | 99.275 | 138 | 1 | 0 | 60 | 197 | 1 | 138 | 3.87e-96 | 275 |
| MS.gene21490.t1 | MTR_7g105200 | 48.913 | 92 | 47 | 0 | 103 | 194 | 1 | 92 | 2.23e-22 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21490.t1 | AT1G32410 | 67.647 | 136 | 43 | 1 | 60 | 194 | 1 | 136 | 1.59e-62 | 191 |
| MS.gene21490.t1 | AT1G32410 | 67.647 | 136 | 43 | 1 | 60 | 194 | 1 | 136 | 1.59e-62 | 191 |
| MS.gene21490.t1 | AT1G32410 | 67.647 | 136 | 43 | 1 | 60 | 194 | 1 | 136 | 1.59e-62 | 191 |
| MS.gene21490.t1 | AT1G32410 | 67.647 | 136 | 43 | 1 | 60 | 194 | 1 | 136 | 1.59e-62 | 191 |
| MS.gene21490.t1 | AT1G32410 | 67.647 | 136 | 43 | 1 | 60 | 194 | 1 | 136 | 1.59e-62 | 191 |
| MS.gene21490.t1 | AT3G11530 | 49.558 | 113 | 57 | 0 | 82 | 194 | 1 | 113 | 7.76e-34 | 117 |
| MS.gene21490.t1 | AT3G11530 | 49.558 | 113 | 57 | 0 | 82 | 194 | 1 | 113 | 7.76e-34 | 117 |
| MS.gene21490.t1 | AT3G11530 | 45.652 | 92 | 50 | 0 | 103 | 194 | 1 | 92 | 5.81e-22 | 85.9 |
Find 49 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAATCGTCTTACAAATTT+TGG | 0.200860 | 5.3:-7141476 | MS.gene21490:intron |
| ATGCCGTTGCTGTTCTTTGC+TGG | 0.234696 | 5.3:-7141155 | MS.gene21490:CDS |
| TCATTTAGCAAAGGAATTAT+TGG | 0.244818 | 5.3:-7143600 | MS.gene21490:CDS |
| GGAATTATTGGATGCTGCTT+GGG | 0.310799 | 5.3:-7143588 | MS.gene21490:CDS |
| CTGTTCTTTGCTGGGTCTGA+TGG | 0.357081 | 5.3:-7141146 | MS.gene21490:CDS |
| TGCCGTTGCTGTTCTTTGCT+GGG | 0.388184 | 5.3:-7141154 | MS.gene21490:CDS |
| ATAGCTCGTGCAAGGATTGC+AGG | 0.395637 | 5.3:-7143628 | MS.gene21490:CDS |
| AATTTCGGCAAGTTCTTAAC+CGG | 0.397297 | 5.3:-7140895 | MS.gene21490:CDS |
| CATCCACAGGAAACACAATA+TGG | 0.410235 | 5.3:+7140762 | None:intergenic |
| CATGTGCTTTGTATAATAAT+TGG | 0.413950 | 5.3:-7141346 | MS.gene21490:CDS |
| AGGAATTATTGGATGCTGCT+TGG | 0.422922 | 5.3:-7143589 | MS.gene21490:CDS |
| TGGTGCAGCTGGGTGAATTT+CGG | 0.434061 | 5.3:-7140910 | MS.gene21490:intron |
| CGGTTGGGCAGCCTTTGCAT+TGG | 0.450746 | 5.3:-7140815 | MS.gene21490:CDS |
| TAGGACATATGAAGTCCAAC+AGG | 0.463545 | 5.3:-7143669 | MS.gene21490:CDS |
| CCAGCATGTATTAATATGCT+TGG | 0.485609 | 5.3:+7140844 | None:intergenic |
| AATTGGTGGCCGATGCTTAG+TGG | 0.489280 | 5.3:-7141329 | MS.gene21490:intron |
| TACATGCTGGTGTGATCGGT+TGG | 0.512206 | 5.3:-7140831 | MS.gene21490:CDS |
| GCCTCCGAGAGTTGAGGCTC+CGG | 0.515791 | 5.3:+7140876 | None:intergenic |
| GCAAAGAACAGCAACGGCAT+TGG | 0.515874 | 5.3:+7141158 | None:intergenic |
| TGGAAGATGGATGACATACC+AGG | 0.532972 | 5.3:-7141559 | MS.gene21490:CDS |
| AAACAGTAACGTACATATCC+TGG | 0.534955 | 5.3:+7141541 | None:intergenic |
| TCATGTTCATTATCACAGAT+AGG | 0.536319 | 5.3:-7143688 | MS.gene21490:CDS |
| GTTTCTCCGAGGAGGATAGC+TGG | 0.545907 | 5.3:+7143720 | None:intergenic |
| AGAAGAGAGTTCCAATGCAA+AGG | 0.555565 | 5.3:+7140804 | None:intergenic |
| CCAAGCATATTAATACATGC+TGG | 0.560109 | 5.3:-7140844 | MS.gene21490:CDS |
| TACGTTACTGTTTCAACACA+GGG | 0.563039 | 5.3:-7141531 | MS.gene21490:CDS |
| ACATGCTGGTGTGATCGGTT+GGG | 0.569252 | 5.3:-7140830 | MS.gene21490:CDS |
| TTAACCGGAGCCTCAACTCT+CGG | 0.570335 | 5.3:-7140880 | MS.gene21490:CDS |
| GAATTATTGGATGCTGCTTG+GGG | 0.577846 | 5.3:-7143587 | MS.gene21490:intron |
| TTAATACATGCTGGTGTGAT+CGG | 0.586015 | 5.3:-7140835 | MS.gene21490:CDS |
| TATCTTCATCACTCATCCAC+AGG | 0.587041 | 5.3:+7140749 | None:intergenic |
| AACATGAGGTGACTGGAAGA+TGG | 0.587821 | 5.3:-7141572 | MS.gene21490:intron |
| TTTATCTTACCACTAAGCAT+CGG | 0.589779 | 5.3:+7141320 | None:intergenic |
| CAGGATGCATCATTTAGCAA+AGG | 0.590508 | 5.3:-7143609 | MS.gene21490:CDS |
| GAATATCCAGCTATCCTCCT+CGG | 0.595450 | 5.3:-7143726 | MS.gene21490:CDS |
| TAGCCATATTGTGTTTCCTG+TGG | 0.596306 | 5.3:-7140765 | MS.gene21490:CDS |
| GTGCTTTGTATAATAATTGG+TGG | 0.599825 | 5.3:-7141343 | MS.gene21490:CDS |
| GTACGTTACTGTTTCAACAC+AGG | 0.600532 | 5.3:-7141532 | MS.gene21490:CDS |
| GATTCATGATAGCTCGTGCA+AGG | 0.603497 | 5.3:-7143636 | MS.gene21490:CDS |
| TGCAATGCCTCCGAGAGTTG+AGG | 0.609649 | 5.3:+7140870 | None:intergenic |
| GACCCAGCAAAGAACAGCAA+CGG | 0.621058 | 5.3:+7141152 | None:intergenic |
| ACCTTGGCGTTTCTCCGAGG+AGG | 0.623643 | 5.3:+7143712 | None:intergenic |
| TCCTCCTCGGAGAAACGCCA+AGG | 0.628878 | 5.3:-7143713 | MS.gene21490:CDS |
| GAATCATAGAGACACCCTGT+TGG | 0.629831 | 5.3:+7143654 | None:intergenic |
| TGATAATGAACATGAGACCT+TGG | 0.642687 | 5.3:+7143696 | None:intergenic |
| GAGACCTTGGCGTTTCTCCG+AGG | 0.668157 | 5.3:+7143709 | None:intergenic |
| TCTCTGTAACATGAGGTGAC+TGG | 0.685080 | 5.3:-7141579 | MS.gene21490:intron |
| ACCGGAGCCTCAACTCTCGG+AGG | 0.710836 | 5.3:-7140877 | MS.gene21490:CDS |
| AGGACATATGAAGTCCAACA+GGG | 0.736901 | 5.3:-7143668 | MS.gene21490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGTTAAAAAAAATGAA+TGG | - | chr5.3:7141651-7141670 | MS.gene21490:intron | 10.0% |
| !! | TAATAATATCTTGAATTTGA+AGG | - | chr5.3:7141311-7141330 | MS.gene21490:intron | 15.0% |
| !! | TTTATTATTTAAGTATCCAT+TGG | - | chr5.3:7141500-7141519 | MS.gene21490:CDS | 15.0% |
| !!! | GACTTTTAAAAATGATTTTT+TGG | - | chr5.3:7141580-7141599 | MS.gene21490:intron | 15.0% |
| !!! | TTTTGATATCATTGATTTAT+TGG | - | chr5.3:7142330-7142349 | MS.gene21490:intron | 15.0% |
| !!! | TTTTTTTTTTTTGTTACCAA+TGG | + | chr5.3:7141550-7141569 | None:intergenic | 15.0% |
| !! | ATAGAGAACTTATGAAAATA+AGG | + | chr5.3:7142572-7142591 | None:intergenic | 20.0% |
| !! | ATTAAAAGCAATATGATCTT+AGG | + | chr5.3:7142270-7142289 | None:intergenic | 20.0% |
| !! | CATTCAATACTTAATGTATT+TGG | - | chr5.3:7141117-7141136 | MS.gene21490:CDS | 20.0% |
| !! | TAAAGTTACTTATATAACAC+AGG | + | chr5.3:7142650-7142669 | None:intergenic | 20.0% |
| !! | TATGATTTGAATGTGATATA+GGG | - | chr5.3:7142439-7142458 | MS.gene21490:intron | 20.0% |
| !! | TATTTACTGACATAATCATT+TGG | - | chr5.3:7142488-7142507 | MS.gene21490:intron | 20.0% |
| !! | TCTCTTTATGAATAAAATCA+TGG | + | chr5.3:7143029-7143048 | None:intergenic | 20.0% |
| !!! | ATTCTTTTGCTTTTCATTTT+AGG | - | chr5.3:7141936-7141955 | MS.gene21490:intron | 20.0% |
| !!! | GAAAAAAGTTGATAACTATT+TGG | - | chr5.3:7143047-7143066 | MS.gene21490:intron | 20.0% |
| !!! | TAAGATCATATTGCTTTTAA+TGG | - | chr5.3:7142269-7142288 | MS.gene21490:intron | 20.0% |
| !!! | TAAGCAAAAATGTACTTTTT+AGG | + | chr5.3:7141180-7141199 | None:intergenic | 20.0% |
| !!! | TTTTCTTTCTTTCAAAGTTA+TGG | + | chr5.3:7141631-7141650 | None:intergenic | 20.0% |
| ! | AAAAATGAATGGAGAAAGTA+AGG | - | chr5.3:7141662-7141681 | MS.gene21490:intron | 25.0% |
| ! | ACAATGAAAAACTTTGAACA+TGG | - | chr5.3:7142720-7142739 | MS.gene21490:intron | 25.0% |
| ! | ATTAAATCAGAAGCAAATAC+TGG | + | chr5.3:7142810-7142829 | None:intergenic | 25.0% |
| ! | CAAGATATTATTACCAATGA+CGG | + | chr5.3:7141304-7141323 | None:intergenic | 25.0% |
| ! | CATGTGCTTTGTATAATAAT+TGG | - | chr5.3:7143117-7143136 | MS.gene21490:intron | 25.0% |
| ! | CATTGAATACACAATGTATT+TGG | + | chr5.3:7141155-7141174 | None:intergenic | 25.0% |
| ! | CTTCTTTAAACAACGTTTAT+AGG | + | chr5.3:7141413-7141432 | None:intergenic | 25.0% |
| ! | GAAAGATCAAATCGATAATA+AGG | + | chr5.3:7141845-7141864 | None:intergenic | 25.0% |
| ! | GTATGATTTGAATGTGATAT+AGG | - | chr5.3:7142438-7142457 | MS.gene21490:intron | 25.0% |
| ! | GTATTAATTATTGCCCTATT+TGG | + | chr5.3:7142702-7142721 | None:intergenic | 25.0% |
| ! | GTTCAGAGTAAATATATCTA+TGG | + | chr5.3:7140994-7141013 | None:intergenic | 25.0% |
| ! | TCATTTAGCAAAGGAATTAT+TGG | - | chr5.3:7140863-7140882 | MS.gene21490:CDS | 25.0% |
| !! | ATATATCTATGGTGTCAATT+AGG | + | chr5.3:7140983-7141002 | None:intergenic | 25.0% |
| !! | CATCGTTTTATCCAATTATT+AGG | - | chr5.3:7141864-7141883 | MS.gene21490:intron | 25.0% |
| !! | TAATAGGTAAGCTTTTATTG+TGG | - | chr5.3:7143364-7143383 | MS.gene21490:intron | 25.0% |
| !! | TGTTTTCTGAATCTGATAAT+AGG | - | chr5.3:7143348-7143367 | MS.gene21490:intron | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | - | chr5.3:7141190-7141209 | MS.gene21490:intron | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | + | chr5.3:7141209-7141190 | None:intergenic | 25.0% |
| !!! | AAAATTCGTTTTGAGTTTTC+AGG | - | chr5.3:7141797-7141816 | MS.gene21490:intron | 25.0% |
| !!! | AAACAGTATTTTGGAAATCA+TGG | + | chr5.3:7141049-7141068 | None:intergenic | 25.0% |
| !!! | AGGTGGTAAATTTTGAAAAT+TGG | + | chr5.3:7141825-7141844 | None:intergenic | 25.0% |
| AAAAATAAGCCAATCCAAAC+AGG | + | chr5.3:7142465-7142484 | None:intergenic | 30.0% | |
| AACAAGTTGCTTATCCAAAT+AGG | - | chr5.3:7142685-7142704 | MS.gene21490:intron | 30.0% | |
| ACAAGTTGCTTATCCAAATA+GGG | - | chr5.3:7142686-7142705 | MS.gene21490:intron | 30.0% | |
| ACATACAGCAACCTAATAAT+TGG | + | chr5.3:7141878-7141897 | None:intergenic | 30.0% | |
| AGATCAAATCGATAATAAGG+TGG | + | chr5.3:7141842-7141861 | None:intergenic | 30.0% | |
| AGATGAAGTCAAAACAAAAG+CGG | + | chr5.3:7142750-7142769 | None:intergenic | 30.0% | |
| AGCATAACAAATGTTACCAA+TGG | + | chr5.3:7141519-7141538 | None:intergenic | 30.0% | |
| AGGTAAAATTTGCATATAGC+TGG | + | chr5.3:7140963-7140982 | None:intergenic | 30.0% | |
| ATATGATCTTAGGCTCTATT+TGG | + | chr5.3:7142260-7142279 | None:intergenic | 30.0% | |
| GAATTGATTGAATCGTGATT+TGG | + | chr5.3:7142025-7142044 | None:intergenic | 30.0% | |
| GATGAGTGATTAATCATTTC+TGG | - | chr5.3:7143505-7143524 | MS.gene21490:intron | 30.0% | |
| GTGCTTTGTATAATAATTGG+TGG | - | chr5.3:7143120-7143139 | MS.gene21490:intron | 30.0% | |
| GTTATGCTATAAGTATCCAT+TGG | - | chr5.3:7141531-7141550 | MS.gene21490:CDS | 30.0% | |
| TAATCACTCATCTCAAGATA+TGG | + | chr5.3:7143497-7143516 | None:intergenic | 30.0% | |
| TACAAGATAAACGAGATTGA+AGG | + | chr5.3:7142000-7142019 | None:intergenic | 30.0% | |
| TACTAATCCCAAGAAACTTT+GGG | - | chr5.3:7140910-7140929 | MS.gene21490:intron | 30.0% | |
| TCATGTTCATTATCACAGAT+AGG | - | chr5.3:7140775-7140794 | MS.gene21490:CDS | 30.0% | |
| TTACTAATCCCAAGAAACTT+TGG | - | chr5.3:7140909-7140928 | MS.gene21490:intron | 30.0% | |
| TTTATCTTACCACTAAGCAT+CGG | + | chr5.3:7143146-7143165 | None:intergenic | 30.0% | |
| ! | AACTTATGTTTTGTGTTGTC+AGG | - | chr5.3:7143094-7143113 | MS.gene21490:intron | 30.0% |
| ! | AAGTTTCTTGGGATTAGTAA+TGG | + | chr5.3:7140909-7140928 | None:intergenic | 30.0% |
| ! | AGGAATCGTCTTACAAATTT+TGG | - | chr5.3:7142987-7143006 | MS.gene21490:intron | 30.0% |
| ! | GAAATCATGGCTTGTATATT+GGG | + | chr5.3:7141036-7141055 | None:intergenic | 30.0% |
| !! | AAGATCTGAATGCTTTAGAA+AGG | - | chr5.3:7143457-7143476 | MS.gene21490:intron | 30.0% |
| !! | ATCGTCTTACAAATTTTGGT+CGG | - | chr5.3:7142991-7143010 | MS.gene21490:intron | 30.0% |
| !! | GTTTTCTTTGAGCATTGTTA+CGG | - | chr5.3:7143206-7143225 | MS.gene21490:intron | 30.0% |
| !! | TTTTCTTTGAGCATTGTTAC+GGG | - | chr5.3:7143207-7143226 | MS.gene21490:intron | 30.0% |
| !!! | AAGTGAAACGTTTTTTGTGA+GGG | + | chr5.3:7141767-7141786 | None:intergenic | 30.0% |
| !!! | TTGTTTTGTGATTTGCTGAA+TGG | - | chr5.3:7143530-7143549 | MS.gene21490:intron | 30.0% |
| AAACAGTAACGTACATATCC+TGG | + | chr5.3:7142925-7142944 | None:intergenic | 35.0% | |
| AATTTCGGCAAGTTCTTAAC+CGG | - | chr5.3:7143568-7143587 | MS.gene21490:intron | 35.0% | |
| ACTCTTACCCAAAGTTTCTT+GGG | + | chr5.3:7140920-7140939 | None:intergenic | 35.0% | |
| ATGTAATAACCACCAACCAA+AGG | + | chr5.3:7143243-7143262 | None:intergenic | 35.0% | |
| CCAAGCATATTAATACATGC+TGG | - | chr5.3:7143619-7143638 | MS.gene21490:CDS | 35.0% | |
| CCAGCATGTATTAATATGCT+TGG | + | chr5.3:7143622-7143641 | None:intergenic | 35.0% | |
| TACGTTACTGTTTCAACACA+GGG | - | chr5.3:7142932-7142951 | MS.gene21490:intron | 35.0% | |
| TATTACCAATGACGGTGATA+GGG | + | chr5.3:7141296-7141315 | None:intergenic | 35.0% | |
| TGTAATAACCACCAACCAAA+GGG | + | chr5.3:7143242-7143261 | None:intergenic | 35.0% | |
| TTAATACATGCTGGTGTGAT+CGG | - | chr5.3:7143628-7143647 | MS.gene21490:CDS | 35.0% | |
| TTATTACCAATGACGGTGAT+AGG | + | chr5.3:7141297-7141316 | None:intergenic | 35.0% | |
| ! | AATCATTTGGAACACTGTCT+AGG | - | chr5.3:7142501-7142520 | MS.gene21490:intron | 35.0% |
| ! | GAAGTAAGATCGTTCAGTTT+TGG | - | chr5.3:7143396-7143415 | MS.gene21490:intron | 35.0% |
| ! | GGAAATCATGGCTTGTATAT+TGG | + | chr5.3:7141037-7141056 | None:intergenic | 35.0% |
| ! | TGATAATGAACATGAGACCT+TGG | + | chr5.3:7140770-7140789 | None:intergenic | 35.0% |
| ! | TTTCTTTGAGCATTGTTACG+GGG | - | chr5.3:7143208-7143227 | MS.gene21490:intron | 35.0% |
| ! | TTTTTGTGAGGGTTACTTCT+TGG | + | chr5.3:7141756-7141775 | None:intergenic | 35.0% |
| !! | GGGAGTATGAAACAGTATTT+TGG | + | chr5.3:7141058-7141077 | None:intergenic | 35.0% |
| !! | TGGTTGGTGGTTATTACATT+CGG | - | chr5.3:7143244-7143263 | MS.gene21490:intron | 35.0% |
| !!! | GAAGTGAAACGTTTTTTGTG+AGG | + | chr5.3:7141768-7141787 | None:intergenic | 35.0% |
| !!! | TTTTGTGATTTGCTGAATGG+TGG | - | chr5.3:7143533-7143552 | MS.gene21490:intron | 35.0% |
| AATGTGATATAGGGCCTGTT+TGG | - | chr5.3:7142448-7142467 | MS.gene21490:intron | 40.0% | |
| AGAAGAGAGTTCCAATGCAA+AGG | + | chr5.3:7143662-7143681 | None:intergenic | 40.0% | |
| AGATACATCAACCAACGTAG+CGG | + | chr5.3:7141722-7141741 | None:intergenic | 40.0% | |
| AGGAATTATTGGATGCTGCT+TGG | - | chr5.3:7140874-7140893 | MS.gene21490:CDS | 40.0% | |
| AGGACATATGAAGTCCAACA+GGG | - | chr5.3:7140795-7140814 | MS.gene21490:CDS | 40.0% | |
| ATACTGTTTCATACTCCCTC+CGG | - | chr5.3:7141060-7141079 | MS.gene21490:intron | 40.0% | |
| ATTACCAATGACGGTGATAG+GGG | + | chr5.3:7141295-7141314 | None:intergenic | 40.0% | |
| CACTCTTACCCAAAGTTTCT+TGG | + | chr5.3:7140921-7140940 | None:intergenic | 40.0% | |
| CAGGATGCATCATTTAGCAA+AGG | - | chr5.3:7140854-7140873 | MS.gene21490:CDS | 40.0% | |
| CATCCACAGGAAACACAATA+TGG | + | chr5.3:7143704-7143723 | None:intergenic | 40.0% | |
| CATTTAAACTTGCGCTGTAC+TGG | + | chr5.3:7143187-7143206 | None:intergenic | 40.0% | |
| GTAATAACCACCAACCAAAG+GGG | + | chr5.3:7143241-7143260 | None:intergenic | 40.0% | |
| GTACGTTACTGTTTCAACAC+AGG | - | chr5.3:7142931-7142950 | MS.gene21490:intron | 40.0% | |
| GTTCGTGATCTTAAGCTACT+AGG | - | chr5.3:7142364-7142383 | MS.gene21490:intron | 40.0% | |
| TAGCCATATTGTGTTTCCTG+TGG | - | chr5.3:7143698-7143717 | MS.gene21490:CDS | 40.0% | |
| TAGGACATATGAAGTCCAAC+AGG | - | chr5.3:7140794-7140813 | MS.gene21490:CDS | 40.0% | |
| TATCTTCATCACTCATCCAC+AGG | + | chr5.3:7143717-7143736 | None:intergenic | 40.0% | |
| TGAATGGAGAAAGTAAGGTG+AGG | - | chr5.3:7141667-7141686 | MS.gene21490:intron | 40.0% | |
| TGATTCACGACGATACAACA+TGG | - | chr5.3:7142295-7142314 | MS.gene21490:intron | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | - | chr5.3:7141194-7141213 | MS.gene21490:intron | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | + | chr5.3:7141213-7141194 | None:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | - | chr5.3:7141193-7141212 | MS.gene21490:intron | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | + | chr5.3:7141212-7141193 | None:intergenic | 40.0% | |
| ! | AGCTACTAGGTTTGCTTTCT+TGG | - | chr5.3:7142377-7142396 | MS.gene21490:intron | 40.0% |
| ! | GAATTATTGGATGCTGCTTG+GGG | - | chr5.3:7140876-7140895 | MS.gene21490:CDS | 40.0% |
| ! | GGAATTATTGGATGCTGCTT+GGG | - | chr5.3:7140875-7140894 | MS.gene21490:CDS | 40.0% |
| !! | GCTTCTCTTTTTGGCACTTT+TGG | - | chr5.3:7142957-7142976 | MS.gene21490:intron | 40.0% |
| !! | TTTTTGGCACTTTTGGTCTC+AGG | - | chr5.3:7142964-7142983 | MS.gene21490:intron | 40.0% |
| AACATGAGGTGACTGGAAGA+TGG | - | chr5.3:7142891-7142910 | MS.gene21490:intron | 45.0% | |
| AGAAAATCCCCTTTGGTTGG+TGG | - | chr5.3:7143231-7143250 | MS.gene21490:intron | 45.0% | |
| CTCACGAGTGATTATGTGAG+TGG | + | chr5.3:7142055-7142074 | None:intergenic | 45.0% | |
| CTCGTAAGCACTATGCTATG+AGG | + | chr5.3:7142835-7142854 | None:intergenic | 45.0% | |
| GAATATCCAGCTATCCTCCT+CGG | - | chr5.3:7140737-7140756 | MS.gene21490:CDS | 45.0% | |
| GAATCATAGAGACACCCTGT+TGG | + | chr5.3:7140812-7140831 | None:intergenic | 45.0% | |
| GATATAGGGCCTGTTTGGAT+TGG | - | chr5.3:7142453-7142472 | MS.gene21490:intron | 45.0% | |
| GATTCATGATAGCTCGTGCA+AGG | - | chr5.3:7140827-7140846 | MS.gene21490:CDS | 45.0% | |
| TCTCTGTAACATGAGGTGAC+TGG | - | chr5.3:7142884-7142903 | MS.gene21490:intron | 45.0% | |
| TGCTTGCTCTCTGTAACATG+AGG | - | chr5.3:7142877-7142896 | MS.gene21490:intron | 45.0% | |
| TGGAAGATGGATGACATACC+AGG | - | chr5.3:7142904-7142923 | MS.gene21490:intron | 45.0% | |
| TTACCAATGACGGTGATAGG+GGG | + | chr5.3:7141294-7141313 | None:intergenic | 45.0% | |
| ! | ACAGAGTATCCTTCCAAGGT+TGG | - | chr5.3:7141695-7141714 | MS.gene21490:intron | 45.0% |
| ! | CACAGGGAAGCTTCTCTTTT+TGG | - | chr5.3:7142948-7142967 | MS.gene21490:intron | 45.0% |
| ! | TGCTTTCTTGGTGCATAGAC+AGG | - | chr5.3:7142389-7142408 | MS.gene21490:intron | 45.0% |
| ACATGCTGGTGTGATCGGTT+GGG | - | chr5.3:7143633-7143652 | MS.gene21490:CDS | 50.0% | |
| ATAGCTCGTGCAAGGATTGC+AGG | - | chr5.3:7140835-7140854 | MS.gene21490:CDS | 50.0% | |
| CCCAAAAGATGTACTCCCTC+CGG | + | chr5.3:7141212-7141231 | None:intergenic | 50.0% | |
| CTGTTCTTTGCTGGGTCTGA+TGG | - | chr5.3:7143317-7143336 | MS.gene21490:intron | 50.0% | |
| GACCCAGCAAAGAACAGCAA+CGG | + | chr5.3:7143314-7143333 | None:intergenic | 50.0% | |
| GCAAAGAACAGCAACGGCAT+TGG | + | chr5.3:7143308-7143327 | None:intergenic | 50.0% | |
| GGAGAAAGTAAGGTGAGGTG+AGG | - | chr5.3:7141672-7141691 | MS.gene21490:intron | 50.0% | |
| GGGAGAAAATCCCCTTTGGT+TGG | - | chr5.3:7143228-7143247 | MS.gene21490:intron | 50.0% | |
| TACATGCTGGTGTGATCGGT+TGG | - | chr5.3:7143632-7143651 | MS.gene21490:CDS | 50.0% | |
| TACGGGGAGAAAATCCCCTT+TGG | - | chr5.3:7143224-7143243 | MS.gene21490:intron | 50.0% | |
| TGGTGCAGCTGGGTGAATTT+CGG | - | chr5.3:7143553-7143572 | MS.gene21490:intron | 50.0% | |
| TTAACCGGAGCCTCAACTCT+CGG | - | chr5.3:7143583-7143602 | MS.gene21490:intron | 50.0% | |
| TTACCCCCTATCACCGTCAT+TGG | - | chr5.3:7141288-7141307 | MS.gene21490:intron | 50.0% | |
| ! | AATTGGTGGCCGATGCTTAG+TGG | - | chr5.3:7143134-7143153 | MS.gene21490:intron | 50.0% |
| ! | ATGCCGTTGCTGTTCTTTGC+TGG | - | chr5.3:7143308-7143327 | MS.gene21490:intron | 50.0% |
| ! | GAGGACAGAGTATCCTTCCA+AGG | - | chr5.3:7141691-7141710 | MS.gene21490:intron | 50.0% |
| ! | TGCCGTTGCTGTTCTTTGCT+GGG | - | chr5.3:7143309-7143328 | MS.gene21490:intron | 50.0% |
| ! | TTGGCACTTTTGGTCTCAGG+AGG | - | chr5.3:7142967-7142986 | MS.gene21490:intron | 50.0% |
| !! | ACCGGAGGGAGTACATCTTT+TGG | - | chr5.3:7141208-7141227 | MS.gene21490:intron | 50.0% |
| !! | CCGGAGGGAGTACATCTTTT+GGG | - | chr5.3:7141209-7141228 | MS.gene21490:intron | 50.0% |
| !! | CGGAGGGAGTACATCTTTTG+GGG | - | chr5.3:7141210-7141229 | MS.gene21490:intron | 50.0% |
| GTTTCTCCGAGGAGGATAGC+TGG | + | chr5.3:7140746-7140765 | None:intergenic | 55.0% | |
| TGCAATGCCTCCGAGAGTTG+AGG | + | chr5.3:7143596-7143615 | None:intergenic | 55.0% | |
| ! | TGCTGAATGGTGGTGCAGCT+GGG | - | chr5.3:7143543-7143562 | MS.gene21490:intron | 55.0% |
| ! | TTGCTGAATGGTGGTGCAGC+TGG | - | chr5.3:7143542-7143561 | MS.gene21490:intron | 55.0% |
| ACCTTGGCGTTTCTCCGAGG+AGG | + | chr5.3:7140754-7140773 | None:intergenic | 60.0% | |
| CCAACGTAGCGGTCCAACCT+TGG | + | chr5.3:7141711-7141730 | None:intergenic | 60.0% | |
| CCAAGGTTGGACCGCTACGT+TGG | - | chr5.3:7141708-7141727 | MS.gene21490:intron | 60.0% | |
| CGGTTGGGCAGCCTTTGCAT+TGG | - | chr5.3:7143648-7143667 | MS.gene21490:CDS | 60.0% | |
| CGTAGCGGTCCAACCTTGGA+AGG | + | chr5.3:7141707-7141726 | None:intergenic | 60.0% | |
| GAGACCTTGGCGTTTCTCCG+AGG | + | chr5.3:7140757-7140776 | None:intergenic | 60.0% | |
| TCCTCCTCGGAGAAACGCCA+AGG | - | chr5.3:7140750-7140769 | MS.gene21490:CDS | 60.0% | |
| ACCGGAGCCTCAACTCTCGG+AGG | - | chr5.3:7143586-7143605 | MS.gene21490:intron | 65.0% | |
| GCCTCCGAGAGTTGAGGCTC+CGG | + | chr5.3:7143590-7143609 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 7140732 | 7143753 | 7140732 | ID=MS.gene21490 |
| chr5.3 | mRNA | 7140732 | 7143753 | 7140732 | ID=MS.gene21490.t1;Parent=MS.gene21490 |
| chr5.3 | exon | 7143588 | 7143753 | 7143588 | ID=MS.gene21490.t1.exon1;Parent=MS.gene21490.t1 |
| chr5.3 | CDS | 7143588 | 7143753 | 7143588 | ID=cds.MS.gene21490.t1;Parent=MS.gene21490.t1 |
| chr5.3 | exon | 7141477 | 7141586 | 7141477 | ID=MS.gene21490.t1.exon2;Parent=MS.gene21490.t1 |
| chr5.3 | CDS | 7141477 | 7141586 | 7141477 | ID=cds.MS.gene21490.t1;Parent=MS.gene21490.t1 |
| chr5.3 | exon | 7141330 | 7141369 | 7141330 | ID=MS.gene21490.t1.exon3;Parent=MS.gene21490.t1 |
| chr5.3 | CDS | 7141330 | 7141369 | 7141330 | ID=cds.MS.gene21490.t1;Parent=MS.gene21490.t1 |
| chr5.3 | exon | 7141116 | 7141200 | 7141116 | ID=MS.gene21490.t1.exon4;Parent=MS.gene21490.t1 |
| chr5.3 | CDS | 7141116 | 7141200 | 7141116 | ID=cds.MS.gene21490.t1;Parent=MS.gene21490.t1 |
| chr5.3 | exon | 7140732 | 7140924 | 7140732 | ID=MS.gene21490.t1.exon5;Parent=MS.gene21490.t1 |
| chr5.3 | CDS | 7140732 | 7140924 | 7140732 | ID=cds.MS.gene21490.t1;Parent=MS.gene21490.t1 |
| Gene Sequence |
| Protein sequence |
