Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21506.t1 | XP_003611409.1 | 98.2 | 495 | 9 | 0 | 1 | 495 | 48 | 542 | 2.50E-290 | 1007.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21506.t1 | O23553 | 73.4 | 503 | 123 | 5 | 1 | 495 | 48 | 547 | 5.0e-223 | 775.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21506.t1 | G7JYN3 | 98.2 | 495 | 9 | 0 | 1 | 495 | 48 | 542 | 1.8e-290 | 1007.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050642 | MS.gene21506 | 0.800492 | 1.41E-48 | -1.69E-46 |
| MS.gene052077 | MS.gene21506 | 0.829097 | 6.23E-55 | -1.69E-46 |
| MS.gene055946 | MS.gene21506 | 0.818775 | 1.64E-52 | -1.69E-46 |
| MS.gene059511 | MS.gene21506 | 0.813555 | 2.41E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21506.t1 | MTR_5g013640 | 98.182 | 495 | 9 | 0 | 1 | 495 | 48 | 542 | 0.0 | 1019 |
| MS.gene21506.t1 | MTR_5g013620 | 94.343 | 495 | 26 | 1 | 1 | 495 | 50 | 542 | 0.0 | 990 |
| MS.gene21506.t1 | MTR_4g099110 | 77.386 | 482 | 102 | 2 | 14 | 488 | 52 | 533 | 0.0 | 800 |
| MS.gene21506.t1 | MTR_6g477780 | 62.281 | 342 | 117 | 2 | 132 | 461 | 10 | 351 | 3.06e-163 | 467 |
| MS.gene21506.t1 | MTR_4g045667 | 50.115 | 435 | 200 | 4 | 38 | 458 | 11 | 442 | 4.49e-156 | 453 |
| MS.gene21506.t1 | MTR_2g089030 | 50.229 | 436 | 200 | 4 | 37 | 458 | 83 | 515 | 3.57e-150 | 442 |
| MS.gene21506.t1 | MTR_8g099775 | 46.608 | 457 | 225 | 7 | 26 | 465 | 62 | 516 | 5.90e-140 | 414 |
| MS.gene21506.t1 | MTR_7g077410 | 45.815 | 454 | 229 | 6 | 18 | 458 | 243 | 692 | 3.23e-125 | 381 |
| MS.gene21506.t1 | MTR_2g020240 | 39.421 | 449 | 259 | 5 | 27 | 470 | 70 | 510 | 6.90e-108 | 331 |
| MS.gene21506.t1 | MTR_5g026210 | 37.716 | 464 | 269 | 9 | 10 | 461 | 189 | 644 | 2.23e-102 | 320 |
| MS.gene21506.t1 | MTR_2g020240 | 38.845 | 381 | 221 | 4 | 94 | 470 | 3 | 375 | 5.37e-91 | 283 |
| MS.gene21506.t1 | MTR_5g026210 | 40.308 | 325 | 184 | 7 | 10 | 332 | 189 | 505 | 1.73e-79 | 257 |
| MS.gene21506.t1 | MTR_5g026210 | 40.942 | 276 | 157 | 5 | 10 | 283 | 189 | 460 | 1.54e-67 | 224 |
| MS.gene21506.t1 | MTR_6g477770 | 66.667 | 93 | 31 | 0 | 40 | 132 | 106 | 198 | 4.71e-40 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21506.t1 | AT4G17090 | 73.611 | 504 | 122 | 5 | 1 | 496 | 48 | 548 | 0.0 | 782 |
| MS.gene21506.t1 | AT3G23920 | 61.064 | 470 | 165 | 3 | 6 | 461 | 76 | 541 | 0.0 | 606 |
| MS.gene21506.t1 | AT4G15210 | 48.853 | 436 | 205 | 5 | 38 | 458 | 12 | 444 | 7.53e-150 | 437 |
| MS.gene21506.t1 | AT4G15210 | 51.637 | 397 | 187 | 4 | 31 | 425 | 5 | 398 | 1.79e-147 | 429 |
| MS.gene21506.t1 | AT2G32290 | 48.506 | 435 | 208 | 5 | 37 | 458 | 75 | 506 | 1.72e-141 | 419 |
| MS.gene21506.t1 | AT4G00490 | 48.409 | 440 | 210 | 6 | 40 | 466 | 95 | 530 | 3.93e-140 | 414 |
| MS.gene21506.t1 | AT4G15210 | 49.492 | 394 | 182 | 4 | 79 | 458 | 1 | 391 | 1.97e-139 | 409 |
| MS.gene21506.t1 | AT4G15210 | 49.492 | 394 | 182 | 4 | 79 | 458 | 1 | 391 | 1.97e-139 | 409 |
| MS.gene21506.t1 | AT5G55700 | 43.836 | 438 | 229 | 4 | 39 | 459 | 91 | 528 | 5.99e-131 | 390 |
| MS.gene21506.t1 | AT2G45880 | 44.796 | 442 | 227 | 6 | 27 | 455 | 235 | 672 | 2.75e-122 | 373 |
| MS.gene21506.t1 | AT5G45300 | 39.819 | 442 | 248 | 8 | 32 | 461 | 245 | 680 | 9.55e-101 | 317 |
| MS.gene21506.t1 | AT5G45300 | 39.819 | 442 | 248 | 8 | 32 | 461 | 247 | 682 | 1.20e-100 | 317 |
| MS.gene21506.t1 | AT5G45300 | 39.819 | 442 | 248 | 8 | 32 | 461 | 261 | 696 | 1.47e-100 | 317 |
| MS.gene21506.t1 | AT5G55700 | 45.260 | 327 | 166 | 3 | 146 | 459 | 39 | 365 | 1.08e-98 | 302 |
| MS.gene21506.t1 | AT5G18670 | 38.642 | 427 | 244 | 4 | 40 | 459 | 87 | 502 | 4.34e-91 | 288 |
Find 120 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGATTCACAGATTATT+TGG | 0.131732 | 5.3:-6846895 | MS.gene21506:CDS |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5.3:+6846455 | None:intergenic |
| CTTTATGTTGGACACATTAA+AGG | 0.225336 | 5.3:-6845540 | MS.gene21506:CDS |
| ATGGTCCTATGAAGTATAAT+TGG | 0.246951 | 5.3:-6847393 | MS.gene21506:CDS |
| CTGGTTTACACAGACAAATT+AGG | 0.254676 | 5.3:-6847020 | MS.gene21506:CDS |
| ACAGTATATGAGATCTTCTT+TGG | 0.254734 | 5.3:-6846252 | MS.gene21506:intron |
| ACTTGTTTGAAATATGCTTT+TGG | 0.284260 | 5.3:+6846034 | None:intergenic |
| TGGACACATTAAAGGAATTA+AGG | 0.290030 | 5.3:-6845532 | MS.gene21506:CDS |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5.3:-6846440 | MS.gene21506:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5.3:-6847425 | MS.gene21506:CDS |
| GGAACATGGAACACAGAATA+TGG | 0.310195 | 5.3:-6846122 | MS.gene21506:CDS |
| GGTTGCTTGAGGGTGAAAAT+TGG | 0.313491 | 5.3:-6845644 | MS.gene21506:CDS |
| CTTTCAAAATCTGATTCATA+TGG | 0.321608 | 5.3:-6845570 | MS.gene21506:CDS |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | 5.3:+6846428 | None:intergenic |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5.3:-6846446 | MS.gene21506:CDS |
| GAAGCATCAGCTGCAGCAAT+TGG | 0.348122 | 5.3:-6846230 | MS.gene21506:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5.3:-6846103 | MS.gene21506:CDS |
| CATGGGTGCTTGAAGAAATA+AGG | 0.350399 | 5.3:-6847055 | MS.gene21506:CDS |
| GAAATGTTGGTGACTCTTGC+AGG | 0.358515 | 5.3:-6847288 | MS.gene21506:intron |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.361586 | 5.3:+6845897 | None:intergenic |
| ACAGCCCAACGAGATGTATT+CGG | 0.366361 | 5.3:+6846986 | None:intergenic |
| GATAGATTCACAGATTATTT+GGG | 0.369481 | 5.3:-6846894 | MS.gene21506:CDS |
| ACAAGTGGACCACATGATTC+TGG | 0.376267 | 5.3:-6846191 | MS.gene21506:CDS |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5.3:+6847523 | None:intergenic |
| AATCAATATCCTGAAGATAC+TGG | 0.386987 | 5.3:-6846161 | MS.gene21506:CDS |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5.3:-6845723 | MS.gene21506:CDS |
| TGGTTTACACAGACAAATTA+GGG | 0.392347 | 5.3:-6847019 | MS.gene21506:CDS |
| CAGTTAAGGAAAACAAGAAA+TGG | 0.402206 | 5.3:-6847621 | MS.gene21506:CDS |
| TTGTCTGTGTAAACCAGCTC+AGG | 0.410476 | 5.3:+6847026 | None:intergenic |
| GCTTCCCAATTATACTTCAT+AGG | 0.415265 | 5.3:+6847388 | None:intergenic |
| CAGCCCAACGAGATGTATTC+GGG | 0.415616 | 5.3:+6846987 | None:intergenic |
| AGCTGGAAGAACTCCACTTC+AGG | 0.421399 | 5.3:-6846946 | MS.gene21506:CDS |
| CTAGCATACCTTTACCTCCA+TGG | 0.426539 | 5.3:-6847073 | MS.gene21506:intron |
| ACGGAAGCTTCTCATGTAAT+CGG | 0.432165 | 5.3:+6846917 | None:intergenic |
| AGCAATGAATGCTAGTTTGA+TGG | 0.437255 | 5.3:-6847479 | MS.gene21506:CDS |
| TGAAAATTGGAGGCAATTTG+TGG | 0.443560 | 5.3:-6845631 | MS.gene21506:CDS |
| AAACACCAACTCTACAGTTA+AGG | 0.445155 | 5.3:-6847635 | MS.gene21506:CDS |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5.3:+6846456 | None:intergenic |
| TTTCACATGCATGGAAATGA+AGG | 0.453930 | 5.3:-6845856 | MS.gene21506:CDS |
| TATGGGACTGATCTTTATGT+TGG | 0.456464 | 5.3:-6845552 | MS.gene21506:CDS |
| TAGCATACCTTTACCTCCAT+GGG | 0.456896 | 5.3:-6847072 | MS.gene21506:CDS |
| TTTGTACCTTGTCATAGCAT+TGG | 0.457100 | 5.3:+6846411 | None:intergenic |
| GGAGTTCTTCCAGCTAGAAC+AGG | 0.462089 | 5.3:+6846954 | None:intergenic |
| AAGATGGCAACAAAGATTGC+AGG | 0.463188 | 5.3:-6845777 | MS.gene21506:CDS |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5.3:+6846464 | None:intergenic |
| GATTCAGTGCCTGTTCTAGC+TGG | 0.467117 | 5.3:-6846963 | MS.gene21506:CDS |
| TCAAGCACCCATGGAGGTAA+AGG | 0.469083 | 5.3:+6847065 | None:intergenic |
| ACTTGATTCACCAATCCTTC+CGG | 0.472396 | 5.3:+6845801 | None:intergenic |
| TTGAAGAGTGCTGGAGTTGA+AGG | 0.475342 | 5.3:-6847454 | MS.gene21506:CDS |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5.3:-6847431 | MS.gene21506:CDS |
| TTTCAAAATCTGATTCATAT+GGG | 0.479314 | 5.3:-6845569 | MS.gene21506:CDS |
| TGGTCCTATGAAGTATAATT+GGG | 0.480087 | 5.3:-6847392 | MS.gene21506:CDS |
| ATTGCAGGTGGTGAACTTGC+TGG | 0.483856 | 5.3:-6845762 | MS.gene21506:CDS |
| CTTATTTCTTCAAGCACCCA+TGG | 0.485962 | 5.3:+6847056 | None:intergenic |
| TATACTAAATTTCACATGCA+TGG | 0.487819 | 5.3:-6845865 | MS.gene21506:CDS |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5.3:-6846457 | MS.gene21506:CDS |
| AAGGAAATTCAAGTGGGACT+AGG | 0.494078 | 5.3:-6846509 | MS.gene21506:CDS |
| AGTTAAGGAAAACAAGAAAT+GGG | 0.500489 | 5.3:-6847620 | MS.gene21506:CDS |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5.3:-6847523 | MS.gene21506:CDS |
| AAAAGCATATTTCAAACAAG+TGG | 0.507306 | 5.3:-6846032 | MS.gene21506:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5.3:-6847432 | MS.gene21506:CDS |
| TTGATGGCATTGAAGAGTGC+TGG | 0.508850 | 5.3:-6847463 | MS.gene21506:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5.3:-6847301 | MS.gene21506:CDS |
| TAATTGTTCACCGGAAGGAT+TGG | 0.517053 | 5.3:-6845811 | MS.gene21506:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5.3:-6847365 | MS.gene21506:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5.3:-6847430 | MS.gene21506:CDS |
| AATCCCGAATACATCTCGTT+GGG | 0.532457 | 5.3:-6846990 | MS.gene21506:CDS |
| AAGCATCAGCTGCAGCAATT+GGG | 0.535892 | 5.3:-6846229 | MS.gene21506:CDS |
| ATTGGTGAATCAAGTGAAGA+TGG | 0.538317 | 5.3:-6845793 | MS.gene21506:CDS |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5.3:-6846464 | MS.gene21506:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5.3:-6847524 | MS.gene21506:CDS |
| ATAAACAAGAGGTTGCTTGA+GGG | 0.540389 | 5.3:-6845654 | MS.gene21506:CDS |
| TGCTTGAGGGTGAAAATTGG+AGG | 0.540642 | 5.3:-6845641 | MS.gene21506:CDS |
| CAGCAATTGGGAAGAAAGAG+TGG | 0.543241 | 5.3:-6846217 | MS.gene21506:CDS |
| TAATCGGAGTAGACCTGAAG+TGG | 0.543820 | 5.3:+6846933 | None:intergenic |
| TGCTGGAGTTGAAGGAGTAA+TGG | 0.546595 | 5.3:-6847446 | MS.gene21506:CDS |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5.3:+6846090 | None:intergenic |
| CTTATTTAAGAATAAACAAG+AGG | 0.556225 | 5.3:-6845665 | MS.gene21506:CDS |
| CATGCTAATTGTTCACCGGA+AGG | 0.556485 | 5.3:-6845816 | MS.gene21506:CDS |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5.3:-6845927 | MS.gene21506:CDS |
| CTGCAGGTTACTATAACACA+AGG | 0.561651 | 5.3:-6845938 | MS.gene21506:CDS |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5.3:-6847435 | MS.gene21506:CDS |
| GTTCAGATGGTACAAAAGCA+TGG | 0.567071 | 5.3:-6847352 | MS.gene21506:CDS |
| GAATCCCGAATACATCTCGT+TGG | 0.567655 | 5.3:-6846991 | MS.gene21506:CDS |
| TTGCCATGCTAATTGTTCAC+CGG | 0.569138 | 5.3:-6845820 | MS.gene21506:CDS |
| ACACAGACAAATTAGGGAGG+AGG | 0.571216 | 5.3:-6847013 | MS.gene21506:CDS |
| AATAAACAAGAGGTTGCTTG+AGG | 0.573981 | 5.3:-6845655 | MS.gene21506:CDS |
| AATAAGGAAGAACCCTGAGC+TGG | 0.576300 | 5.3:-6847039 | MS.gene21506:CDS |
| GCACAAATGCTAGCAAAACA+TGG | 0.581514 | 5.3:-6845891 | MS.gene21506:CDS |
| AATAATCTGTGAATCTATCA+CGG | 0.584013 | 5.3:+6846898 | None:intergenic |
| CATGCAACTGAATTAACTGC+AGG | 0.589620 | 5.3:-6845954 | MS.gene21506:CDS |
| AAGAAAGAGTGGGGAACAAG+TGG | 0.590788 | 5.3:-6846206 | MS.gene21506:CDS |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5.3:+6846485 | None:intergenic |
| TGCTGATTCGAATAGAGTAC+CGG | 0.599220 | 5.3:-6847560 | MS.gene21506:CDS |
| AAGTGGGACTAGGTCCATGT+GGG | 0.602013 | 5.3:-6846499 | MS.gene21506:CDS |
| TCATTTGAAGGAAATTCAAG+TGG | 0.603082 | 5.3:-6846516 | MS.gene21506:intron |
| GGTGAACAATTAGCATGGCA+AGG | 0.606783 | 5.3:+6845822 | None:intergenic |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.609724 | 5.3:-6845606 | MS.gene21506:CDS |
| ACTTGCTGGTGAGAATGCAT+TGG | 0.612219 | 5.3:-6845748 | MS.gene21506:CDS |
| AGCAATTGGGAAGAAAGAGT+GGG | 0.613841 | 5.3:-6846216 | MS.gene21506:CDS |
| CATTTGAAGGAAATTCAAGT+GGG | 0.615578 | 5.3:-6846515 | MS.gene21506:intron |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5.3:-6846077 | MS.gene21506:CDS |
| GTTGTGAGTATGTCTGATGG+TGG | 0.636973 | 5.3:-6845603 | MS.gene21506:CDS |
| TGTCTGTGTAAACCAGCTCA+GGG | 0.638501 | 5.3:+6847027 | None:intergenic |
| CAAGTGGGACTAGGTCCATG+TGG | 0.641124 | 5.3:-6846500 | MS.gene21506:CDS |
| CTTCCGGTGAACAATTAGCA+TGG | 0.643708 | 5.3:+6845817 | None:intergenic |
| TCGTGGTTATGAGCAATCGA+TGG | 0.660833 | 5.3:+6847583 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5.3:+6847541 | None:intergenic |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5.3:-6847520 | MS.gene21506:CDS |
| GCAAGAAACACATTTCACAA+AGG | 0.674864 | 5.3:-6847659 | MS.gene21506:CDS |
| ATGGCAACAAAGATTGCAGG+TGG | 0.675921 | 5.3:-6845774 | MS.gene21506:CDS |
| CTCTATTCGAATCAGCATCG+TGG | 0.679739 | 5.3:+6847566 | None:intergenic |
| ATTTCTTCAAGCACCCATGG+AGG | 0.686996 | 5.3:+6847059 | None:intergenic |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5.3:-6846417 | MS.gene21506:intron |
| TGTCTGATGGTGGTAAACCA+AGG | 0.696376 | 5.3:-6845593 | MS.gene21506:CDS |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5.3:-6847533 | MS.gene21506:CDS |
| GCAATTGGGAAGAAAGAGTG+GGG | 0.706843 | 5.3:-6846215 | MS.gene21506:CDS |
| AGTGGGACTAGGTCCATGTG+GGG | 0.709601 | 5.3:-6846498 | MS.gene21506:CDS |
| TTGTATTGACCAGAATCATG+TGG | 0.728140 | 5.3:+6846182 | None:intergenic |
| TTTACACAGACAAATTAGGG+AGG | 0.734523 | 5.3:-6847016 | MS.gene21506:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAGAATTTAATATACT+TGG | - | chr5.3:6846337-6846356 | MS.gene21506:intron | 10.0% |
| !!! | AGTATCATATTTTTTATTTT+TGG | + | chr5.3:6846037-6846056 | None:intergenic | 10.0% |
| !! | ACATTCAATTTGTCATATTA+AGG | - | chr5.3:6846512-6846531 | MS.gene21506:intron | 20.0% |
| !! | CTTATTTAAGAATAAACAAG+AGG | - | chr5.3:6847487-6847506 | MS.gene21506:CDS | 20.0% |
| !! | TTAAAACCAAATTCATTTGA+AGG | - | chr5.3:6846624-6846643 | MS.gene21506:intron | 20.0% |
| !! | TTTCAAAATCTGATTCATAT+GGG | - | chr5.3:6847583-6847602 | MS.gene21506:CDS | 20.0% |
| ! | AATAATCTGTGAATCTATCA+CGG | + | chr5.3:6846257-6846276 | None:intergenic | 25.0% |
| ! | AGTTAAGGAAAACAAGAAAT+GGG | - | chr5.3:6845532-6845551 | MS.gene21506:CDS | 25.0% |
| ! | CTTTCAAAATCTGATTCATA+TGG | - | chr5.3:6847582-6847601 | MS.gene21506:CDS | 25.0% |
| ! | GAATTTCCTTCAAATGAATT+TGG | + | chr5.3:6846633-6846652 | None:intergenic | 25.0% |
| ! | GATAGATTCACAGATTATTT+GGG | - | chr5.3:6846258-6846277 | MS.gene21506:intron | 25.0% |
| ! | TAATATTCAACCACCAATTT+AGG | - | chr5.3:6845914-6845933 | MS.gene21506:CDS | 25.0% |
| ! | TATACTAAATTTCACATGCA+TGG | - | chr5.3:6847287-6847306 | MS.gene21506:intron | 25.0% |
| ! | TGATAGATTCACAGATTATT+TGG | - | chr5.3:6846257-6846276 | MS.gene21506:intron | 25.0% |
| !! | AAAAGCATATTTCAAACAAG+TGG | - | chr5.3:6847120-6847139 | MS.gene21506:intron | 25.0% |
| !! | GTCTAACATCAATATGATTT+TGG | + | chr5.3:6846803-6846822 | None:intergenic | 25.0% |
| !! | TGTTTGAAAGTAAGTCATTT+TGG | + | chr5.3:6846883-6846902 | None:intergenic | 25.0% |
| !!! | AAGATACTGGATTTTTCAAA+AGG | - | chr5.3:6847004-6847023 | MS.gene21506:CDS | 25.0% |
| !!! | ACTTGTTTGAAATATGCTTT+TGG | + | chr5.3:6847121-6847140 | None:intergenic | 25.0% |
| !!! | AGATACTGGATTTTTCAAAA+GGG | - | chr5.3:6847005-6847024 | MS.gene21506:CDS | 25.0% |
| AAACTATCAGCAAAAATAGC+TGG | - | chr5.3:6847147-6847166 | MS.gene21506:intron | 30.0% | |
| AATCAATATCCTGAAGATAC+TGG | - | chr5.3:6846991-6847010 | MS.gene21506:CDS | 30.0% | |
| ACACTAAATAGAGCCTAAAT+TGG | + | chr5.3:6845930-6845949 | None:intergenic | 30.0% | |
| ACAGTATATGAGATCTTCTT+TGG | - | chr5.3:6846900-6846919 | MS.gene21506:CDS | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | - | chr5.3:6847429-6847448 | MS.gene21506:CDS | 30.0% | |
| ATATTAAGGATAGTTGCAAG+AGG | - | chr5.3:6846526-6846545 | MS.gene21506:intron | 30.0% | |
| ATGGTCCTATGAAGTATAAT+TGG | - | chr5.3:6845759-6845778 | MS.gene21506:CDS | 30.0% | |
| CAAAAATAGCTGGAATTCAT+TGG | - | chr5.3:6847157-6847176 | MS.gene21506:intron | 30.0% | |
| CAGTTAAGGAAAACAAGAAA+TGG | - | chr5.3:6845531-6845550 | MS.gene21506:CDS | 30.0% | |
| CATTTGAAGGAAATTCAAGT+GGG | - | chr5.3:6846637-6846656 | MS.gene21506:intron | 30.0% | |
| CTTTATGTTGGACACATTAA+AGG | - | chr5.3:6847612-6847631 | MS.gene21506:CDS | 30.0% | |
| TATAACACAAGGTTTCATGA+TGG | - | chr5.3:6847225-6847244 | MS.gene21506:intron | 30.0% | |
| TCATTTGAAGGAAATTCAAG+TGG | - | chr5.3:6846636-6846655 | MS.gene21506:intron | 30.0% | |
| TGGACACATTAAAGGAATTA+AGG | - | chr5.3:6847620-6847639 | MS.gene21506:CDS | 30.0% | |
| TGGTCCTATGAAGTATAATT+GGG | - | chr5.3:6845760-6845779 | MS.gene21506:CDS | 30.0% | |
| TGGTTTACACAGACAAATTA+GGG | - | chr5.3:6846133-6846152 | MS.gene21506:CDS | 30.0% | |
| TTGAAAAATCCAGTATCTTC+AGG | + | chr5.3:6847003-6847022 | None:intergenic | 30.0% | |
| ! | ATTTTCAACGAATCAATGTG+TGG | + | chr5.3:6846418-6846437 | None:intergenic | 30.0% |
| ! | GTTATGTCTTTTCATCAATG+TGG | - | chr5.3:6845839-6845858 | MS.gene21506:CDS | 30.0% |
| !! | TGCAAGAGGAATACTTTTTA+GGG | - | chr5.3:6846540-6846559 | MS.gene21506:intron | 30.0% |
| !! | TTGCAAGAGGAATACTTTTT+AGG | - | chr5.3:6846539-6846558 | MS.gene21506:intron | 30.0% |
| AAACACCAACTCTACAGTTA+AGG | - | chr5.3:6845517-6845536 | MS.gene21506:CDS | 35.0% | |
| AATAAACAAGAGGTTGCTTG+AGG | - | chr5.3:6847497-6847516 | MS.gene21506:CDS | 35.0% | |
| ACTAAGACTTGATGCACATT+TGG | - | chr5.3:6846583-6846602 | MS.gene21506:intron | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | - | chr5.3:6846735-6846754 | MS.gene21506:intron | 35.0% | |
| ATAAACAAGAGGTTGCTTGA+GGG | - | chr5.3:6847498-6847517 | MS.gene21506:CDS | 35.0% | |
| ATGGAGATTTCTTCCTTGAT+TGG | - | chr5.3:6847049-6847068 | MS.gene21506:CDS | 35.0% | |
| ATTGGTGAATCAAGTGAAGA+TGG | - | chr5.3:6847359-6847378 | MS.gene21506:CDS | 35.0% | |
| CATAGTAAGTTTCACCAACT+TGG | - | chr5.3:6846290-6846309 | MS.gene21506:intron | 35.0% | |
| CTAAATAGAGCCTAAATTGG+TGG | + | chr5.3:6845927-6845946 | None:intergenic | 35.0% | |
| CTGGTTTACACAGACAAATT+AGG | - | chr5.3:6846132-6846151 | MS.gene21506:CDS | 35.0% | |
| GCAAGAAACACATTTCACAA+AGG | - | chr5.3:6845493-6845512 | MS.gene21506:CDS | 35.0% | |
| GCTTCCCAATTATACTTCAT+AGG | + | chr5.3:6845767-6845786 | None:intergenic | 35.0% | |
| TATGGGACTGATCTTTATGT+TGG | - | chr5.3:6847600-6847619 | MS.gene21506:CDS | 35.0% | |
| TGAAAATTGGAGGCAATTTG+TGG | - | chr5.3:6847521-6847540 | MS.gene21506:CDS | 35.0% | |
| TTTACACAGACAAATTAGGG+AGG | - | chr5.3:6846136-6846155 | MS.gene21506:CDS | 35.0% | |
| TTTCACATGCATGGAAATGA+AGG | - | chr5.3:6847296-6847315 | MS.gene21506:CDS | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | + | chr5.3:6847258-6847277 | None:intergenic | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | + | chr5.3:6846744-6846763 | None:intergenic | 35.0% | |
| ! | AGCAATGAATGCTAGTTTGA+TGG | - | chr5.3:6845673-6845692 | MS.gene21506:CDS | 35.0% |
| ! | ATGTCTTTTCATCAATGTGG+TGG | - | chr5.3:6845842-6845861 | MS.gene21506:CDS | 35.0% |
| ! | GTTTTCCTTAACTGTAGAGT+TGG | + | chr5.3:6845525-6845544 | None:intergenic | 35.0% |
| ! | TTGTATTGACCAGAATCATG+TGG | + | chr5.3:6846973-6846992 | None:intergenic | 35.0% |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | - | chr5.3:6847546-6847565 | MS.gene21506:CDS | 35.0% |
| ! | TTTTCAAAAGGGAAGGAACA+TGG | - | chr5.3:6847016-6847035 | MS.gene21506:CDS | 35.0% |
| !! | ACCAACTTGGTCTTCAATTT+TGG | - | chr5.3:6846303-6846322 | MS.gene21506:intron | 35.0% |
| !! | ACTGGATTTTTCAAAAGGGA+AGG | - | chr5.3:6847009-6847028 | MS.gene21506:CDS | 35.0% |
| !! | ATATGCTTTTGGCTGATACA+AGG | + | chr5.3:6847110-6847129 | None:intergenic | 35.0% |
| !! | CAACTTGGTCTTCAATTTTG+GGG | - | chr5.3:6846305-6846324 | MS.gene21506:intron | 35.0% |
| !! | CCAACTTGGTCTTCAATTTT+GGG | - | chr5.3:6846304-6846323 | MS.gene21506:intron | 35.0% |
| !! | GAATCAGATTTTGAAAGCCT+TGG | + | chr5.3:6847579-6847598 | None:intergenic | 35.0% |
| !! | TCAAGCAAACTTGTTGAACA+TGG | - | chr5.3:6847075-6847094 | MS.gene21506:intron | 35.0% |
| !!! | TCTTCAATTTTGGGGTTACT+TGG | - | chr5.3:6846313-6846332 | MS.gene21506:intron | 35.0% |
| AAGATGGCAACAAAGATTGC+AGG | - | chr5.3:6847375-6847394 | MS.gene21506:CDS | 40.0% | |
| AAGGAAATTCAAGTGGGACT+AGG | - | chr5.3:6846643-6846662 | MS.gene21506:intron | 40.0% | |
| AATCCCGAATACATCTCGTT+GGG | - | chr5.3:6846162-6846181 | MS.gene21506:CDS | 40.0% | |
| AATGGCAACATCACAAACAC+CGG | + | chr5.3:6845614-6845633 | None:intergenic | 40.0% | |
| ACGGAAGCTTCTCATGTAAT+CGG | + | chr5.3:6846238-6846257 | None:intergenic | 40.0% | |
| ACTTGATTCACCAATCCTTC+CGG | + | chr5.3:6847354-6847373 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | - | chr5.3:6846712-6846731 | MS.gene21506:intron | 40.0% | |
| AGCAATTGGGAAGAAAGAGT+GGG | - | chr5.3:6846936-6846955 | MS.gene21506:CDS | 40.0% | |
| CATGCAACTGAATTAACTGC+AGG | - | chr5.3:6847198-6847217 | MS.gene21506:intron | 40.0% | |
| CATGGGTGCTTGAAGAAATA+AGG | - | chr5.3:6846097-6846116 | MS.gene21506:CDS | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | + | chr5.3:6846727-6846746 | None:intergenic | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | - | chr5.3:6845629-6845648 | MS.gene21506:CDS | 40.0% | |
| CCCAAAATTGAAGACCAAGT+TGG | + | chr5.3:6846307-6846326 | None:intergenic | 40.0% | |
| CTGCAGGTTACTATAACACA+AGG | - | chr5.3:6847214-6847233 | MS.gene21506:intron | 40.0% | |
| GCACAAATGCTAGCAAAACA+TGG | - | chr5.3:6847261-6847280 | MS.gene21506:intron | 40.0% | |
| GGAACATGGAACACAGAATA+TGG | - | chr5.3:6847030-6847049 | MS.gene21506:CDS | 40.0% | |
| GTTCAGATGGTACAAAAGCA+TGG | - | chr5.3:6845800-6845819 | MS.gene21506:CDS | 40.0% | |
| GTTTGCTTGAGTACCAATCA+AGG | + | chr5.3:6847065-6847084 | None:intergenic | 40.0% | |
| TAATTGTTCACCGGAAGGAT+TGG | - | chr5.3:6847341-6847360 | MS.gene21506:CDS | 40.0% | |
| TAGCATACCTTTACCTCCAT+GGG | - | chr5.3:6846080-6846099 | MS.gene21506:CDS | 40.0% | |
| TCCAAGTTCCATCAGTTTCA+GGG | + | chr5.3:6846699-6846718 | None:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | - | chr5.3:6845619-6845638 | MS.gene21506:CDS | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | + | chr5.3:6846700-6846719 | None:intergenic | 40.0% | |
| TTGCCATGCTAATTGTTCAC+CGG | - | chr5.3:6847332-6847351 | MS.gene21506:CDS | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | - | chr5.3:6845717-6845736 | MS.gene21506:CDS | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | - | chr5.3:6845721-6845740 | MS.gene21506:CDS | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | - | chr5.3:6845851-6845870 | MS.gene21506:CDS | 40.0% |
| ! | CTTATTTCTTCAAGCACCCA+TGG | + | chr5.3:6846099-6846118 | None:intergenic | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | - | chr5.3:6845740-6845759 | MS.gene21506:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | - | chr5.3:6845787-6845806 | MS.gene21506:CDS | 40.0% |
| !! | GGTCAAGTTTTGTCAACAAG+TGG | - | chr5.3:6847450-6847469 | MS.gene21506:CDS | 40.0% |
| !! | TGCTGATTCGAATAGAGTAC+CGG | - | chr5.3:6845592-6845611 | MS.gene21506:CDS | 40.0% |
| AAGAAAGAGTGGGGAACAAG+TGG | - | chr5.3:6846946-6846965 | MS.gene21506:CDS | 45.0% | |
| AAGCATCAGCTGCAGCAATT+GGG | - | chr5.3:6846923-6846942 | MS.gene21506:CDS | 45.0% | |
| AATAAGGAAGAACCCTGAGC+TGG | - | chr5.3:6846113-6846132 | MS.gene21506:CDS | 45.0% | |
| ACAAGTGGACCACATGATTC+TGG | - | chr5.3:6846961-6846980 | MS.gene21506:CDS | 45.0% | |
| ACACAGACAAATTAGGGAGG+AGG | - | chr5.3:6846139-6846158 | MS.gene21506:CDS | 45.0% | |
| ACAGCCCAACGAGATGTATT+CGG | + | chr5.3:6846169-6846188 | None:intergenic | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | - | chr5.3:6846695-6846714 | MS.gene21506:intron | 45.0% | |
| ATGGCAACAAAGATTGCAGG+TGG | - | chr5.3:6847378-6847397 | MS.gene21506:CDS | 45.0% | |
| ATTTCTTCAAGCACCCATGG+AGG | + | chr5.3:6846096-6846115 | None:intergenic | 45.0% | |
| CAGCAATTGGGAAGAAAGAG+TGG | - | chr5.3:6846935-6846954 | MS.gene21506:CDS | 45.0% | |
| CATGCTAATTGTTCACCGGA+AGG | - | chr5.3:6847336-6847355 | MS.gene21506:CDS | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | + | chr5.3:6846691-6846710 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | - | chr5.3:6846688-6846707 | MS.gene21506:intron | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | + | chr5.3:6845632-6845651 | None:intergenic | 45.0% | |
| CTAGCATACCTTTACCTCCA+TGG | - | chr5.3:6846079-6846098 | MS.gene21506:CDS | 45.0% | |
| CTCTATTCGAATCAGCATCG+TGG | + | chr5.3:6845589-6845608 | None:intergenic | 45.0% | |
| CTTCCGGTGAACAATTAGCA+TGG | + | chr5.3:6847338-6847357 | None:intergenic | 45.0% | |
| GAATCCCGAATACATCTCGT+TGG | - | chr5.3:6846161-6846180 | MS.gene21506:CDS | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | - | chr5.3:6846706-6846725 | MS.gene21506:intron | 45.0% | |
| GCAATTGGGAAGAAAGAGTG+GGG | - | chr5.3:6846937-6846956 | MS.gene21506:CDS | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | - | chr5.3:6845628-6845647 | MS.gene21506:CDS | 45.0% | |
| GGTGAACAATTAGCATGGCA+AGG | + | chr5.3:6847333-6847352 | None:intergenic | 45.0% | |
| GGTTGCTTGAGGGTGAAAAT+TGG | - | chr5.3:6847508-6847527 | MS.gene21506:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | - | chr5.3:6847549-6847568 | MS.gene21506:CDS | 45.0% | |
| TAATCGGAGTAGACCTGAAG+TGG | + | chr5.3:6846222-6846241 | None:intergenic | 45.0% | |
| TCGTGGTTATGAGCAATCGA+TGG | + | chr5.3:6845572-6845591 | None:intergenic | 45.0% | |
| TGCTGGAGTTGAAGGAGTAA+TGG | - | chr5.3:6845706-6845725 | MS.gene21506:CDS | 45.0% | |
| TGCTTGAGGGTGAAAATTGG+AGG | - | chr5.3:6847511-6847530 | MS.gene21506:CDS | 45.0% | |
| TGTCTGTGTAAACCAGCTCA+GGG | + | chr5.3:6846128-6846147 | None:intergenic | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | - | chr5.3:6845632-6845651 | MS.gene21506:CDS | 45.0% | |
| TTGTCTGTGTAAACCAGCTC+AGG | + | chr5.3:6846129-6846148 | None:intergenic | 45.0% | |
| ! | ACTTGCTGGTGAGAATGCAT+TGG | - | chr5.3:6847404-6847423 | MS.gene21506:CDS | 45.0% |
| ! | GAGTAATGGTTGATGCTTGG+TGG | - | chr5.3:6845720-6845739 | MS.gene21506:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | - | chr5.3:6845722-6845741 | MS.gene21506:CDS | 45.0% |
| ! | TTGATGGCATTGAAGAGTGC+TGG | - | chr5.3:6845689-6845708 | MS.gene21506:CDS | 45.0% |
| !! | GAAATGTTGGTGACTCTTGC+AGG | - | chr5.3:6845864-6845883 | MS.gene21506:CDS | 45.0% |
| !! | TGTCTGATGGTGGTAAACCA+AGG | - | chr5.3:6847559-6847578 | MS.gene21506:CDS | 45.0% |
| !! | TTGAAGAGTGCTGGAGTTGA+AGG | - | chr5.3:6845698-6845717 | MS.gene21506:CDS | 45.0% |
| AAGTGGGACTAGGTCCATGT+GGG | - | chr5.3:6846653-6846672 | MS.gene21506:intron | 50.0% | |
| AGCTGGAAGAACTCCACTTC+AGG | - | chr5.3:6846206-6846225 | MS.gene21506:CDS | 50.0% | |
| ATTGCAGGTGGTGAACTTGC+TGG | - | chr5.3:6847390-6847409 | MS.gene21506:CDS | 50.0% | |
| CAGCCCAACGAGATGTATTC+GGG | + | chr5.3:6846168-6846187 | None:intergenic | 50.0% | |
| GATTCAGTGCCTGTTCTAGC+TGG | - | chr5.3:6846189-6846208 | MS.gene21506:CDS | 50.0% | |
| GGAGTTCTTCCAGCTAGAAC+AGG | + | chr5.3:6846201-6846220 | None:intergenic | 50.0% | |
| GGATATCTCAACTCCCCACA+TGG | + | chr5.3:6846670-6846689 | None:intergenic | 50.0% | |
| TCAAGCACCCATGGAGGTAA+AGG | + | chr5.3:6846090-6846109 | None:intergenic | 50.0% | |
| ! | GAAGCATCAGCTGCAGCAAT+TGG | - | chr5.3:6846922-6846941 | MS.gene21506:CDS | 50.0% |
| !! | GTTGGTGACTCTTGCAGGTA+TGG | - | chr5.3:6845869-6845888 | MS.gene21506:CDS | 50.0% |
| AGTGGGACTAGGTCCATGTG+GGG | - | chr5.3:6846654-6846673 | MS.gene21506:intron | 55.0% | |
| CAAGTGGGACTAGGTCCATG+TGG | - | chr5.3:6846652-6846671 | MS.gene21506:intron | 55.0% | |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | - | chr5.3:6845727-6845746 | MS.gene21506:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6845491 | 6847683 | 6845491 | ID=MS.gene21506 |
| chr5.3 | mRNA | 6845491 | 6847683 | 6845491 | ID=MS.gene21506.t1;Parent=MS.gene21506 |
| chr5.3 | exon | 6847289 | 6847683 | 6847289 | ID=MS.gene21506.t1.exon1;Parent=MS.gene21506.t1 |
| chr5.3 | CDS | 6847289 | 6847683 | 6847289 | ID=cds.MS.gene21506.t1;Parent=MS.gene21506.t1 |
| chr5.3 | exon | 6846881 | 6847091 | 6846881 | ID=MS.gene21506.t1.exon2;Parent=MS.gene21506.t1 |
| chr5.3 | CDS | 6846881 | 6847091 | 6846881 | ID=cds.MS.gene21506.t1;Parent=MS.gene21506.t1 |
| chr5.3 | exon | 6846418 | 6846528 | 6846418 | ID=MS.gene21506.t1.exon3;Parent=MS.gene21506.t1 |
| chr5.3 | CDS | 6846418 | 6846528 | 6846418 | ID=cds.MS.gene21506.t1;Parent=MS.gene21506.t1 |
| chr5.3 | exon | 6845491 | 6846270 | 6845491 | ID=MS.gene21506.t1.exon4;Parent=MS.gene21506.t1 |
| chr5.3 | CDS | 6845491 | 6846270 | 6845491 | ID=cds.MS.gene21506.t1;Parent=MS.gene21506.t1 |
| Gene Sequence |
| Protein sequence |
