Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21509.t1 | XP_003611408.1 | 98.8 | 494 | 6 | 0 | 1 | 494 | 50 | 543 | 2.80E-294 | 1020.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21509.t1 | O23553 | 74.1 | 486 | 112 | 5 | 19 | 494 | 67 | 548 | 1.7e-218 | 760.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21509.t1 | G7JYN2 | 98.8 | 494 | 6 | 0 | 1 | 494 | 50 | 543 | 2.0e-294 | 1020.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051064 | MS.gene21509 | 0.836621 | 8.41E-57 | -1.69E-46 |
| MS.gene055946 | MS.gene21509 | 0.826601 | 2.48E-54 | -1.69E-46 |
| MS.gene059511 | MS.gene21509 | 0.821256 | 4.45E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21509.t1 | MTR_5g013620 | 98.785 | 494 | 6 | 0 | 1 | 494 | 50 | 543 | 0.0 | 1031 |
| MS.gene21509.t1 | MTR_5g013640 | 93.952 | 496 | 28 | 1 | 1 | 494 | 48 | 543 | 0.0 | 981 |
| MS.gene21509.t1 | MTR_4g099110 | 77.406 | 478 | 101 | 2 | 16 | 486 | 54 | 531 | 0.0 | 795 |
| MS.gene21509.t1 | MTR_6g477780 | 63.158 | 342 | 114 | 2 | 132 | 461 | 10 | 351 | 1.12e-165 | 473 |
| MS.gene21509.t1 | MTR_4g045667 | 50.345 | 435 | 199 | 4 | 38 | 458 | 11 | 442 | 1.72e-157 | 457 |
| MS.gene21509.t1 | MTR_2g089030 | 50.229 | 436 | 200 | 4 | 37 | 458 | 83 | 515 | 3.50e-150 | 441 |
| MS.gene21509.t1 | MTR_8g099775 | 46.039 | 467 | 231 | 7 | 41 | 494 | 80 | 538 | 7.71e-141 | 416 |
| MS.gene21509.t1 | MTR_7g077410 | 46.591 | 440 | 218 | 6 | 40 | 466 | 265 | 700 | 5.24e-124 | 378 |
| MS.gene21509.t1 | MTR_2g020240 | 38.581 | 451 | 267 | 4 | 14 | 459 | 57 | 502 | 1.51e-106 | 328 |
| MS.gene21509.t1 | MTR_5g026210 | 38.013 | 463 | 269 | 8 | 10 | 461 | 189 | 644 | 1.93e-104 | 326 |
| MS.gene21509.t1 | MTR_2g020240 | 39.024 | 369 | 216 | 3 | 94 | 458 | 3 | 366 | 2.12e-90 | 281 |
| MS.gene21509.t1 | MTR_5g026210 | 40.741 | 324 | 184 | 6 | 10 | 332 | 189 | 505 | 7.73e-81 | 260 |
| MS.gene21509.t1 | MTR_5g026210 | 41.455 | 275 | 157 | 4 | 10 | 283 | 189 | 460 | 8.84e-69 | 228 |
| MS.gene21509.t1 | MTR_6g477770 | 66.667 | 93 | 31 | 0 | 40 | 132 | 106 | 198 | 4.76e-40 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21509.t1 | AT4G17090 | 74.074 | 486 | 112 | 5 | 19 | 494 | 67 | 548 | 0.0 | 767 |
| MS.gene21509.t1 | AT3G23920 | 65.367 | 436 | 137 | 2 | 40 | 461 | 106 | 541 | 0.0 | 612 |
| MS.gene21509.t1 | AT4G15210 | 48.853 | 436 | 205 | 5 | 38 | 458 | 12 | 444 | 2.44e-150 | 439 |
| MS.gene21509.t1 | AT4G15210 | 52.308 | 390 | 181 | 4 | 38 | 425 | 12 | 398 | 7.35e-148 | 429 |
| MS.gene21509.t1 | AT2G32290 | 47.640 | 445 | 217 | 5 | 27 | 458 | 65 | 506 | 7.01e-142 | 420 |
| MS.gene21509.t1 | AT4G15210 | 49.492 | 394 | 182 | 4 | 79 | 458 | 1 | 391 | 6.55e-140 | 410 |
| MS.gene21509.t1 | AT4G15210 | 49.492 | 394 | 182 | 4 | 79 | 458 | 1 | 391 | 6.55e-140 | 410 |
| MS.gene21509.t1 | AT4G00490 | 49.074 | 432 | 203 | 6 | 40 | 458 | 95 | 522 | 1.60e-139 | 412 |
| MS.gene21509.t1 | AT5G55700 | 43.836 | 438 | 229 | 4 | 39 | 459 | 91 | 528 | 3.82e-131 | 391 |
| MS.gene21509.t1 | AT2G45880 | 46.154 | 429 | 214 | 6 | 40 | 455 | 248 | 672 | 2.36e-122 | 374 |
| MS.gene21509.t1 | AT5G45300 | 39.954 | 438 | 245 | 8 | 36 | 461 | 249 | 680 | 1.87e-100 | 317 |
| MS.gene21509.t1 | AT5G45300 | 39.954 | 438 | 245 | 8 | 36 | 461 | 251 | 682 | 2.14e-100 | 317 |
| MS.gene21509.t1 | AT5G45300 | 39.954 | 438 | 245 | 8 | 36 | 461 | 265 | 696 | 3.03e-100 | 317 |
| MS.gene21509.t1 | AT5G55700 | 45.260 | 327 | 166 | 3 | 146 | 459 | 39 | 365 | 6.96e-99 | 302 |
| MS.gene21509.t1 | AT5G18670 | 38.173 | 427 | 246 | 4 | 40 | 459 | 87 | 502 | 1.97e-90 | 286 |
Find 117 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGATTTACAGATTATT+TGG | 0.120196 | 5.3:-6795937 | MS.gene21509:CDS |
| CCAATGAATTCCAGCTATTT+TGG | 0.174268 | 5.3:+6794971 | None:intergenic |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5.3:+6795431 | None:intergenic |
| CTAGTTTACACAGACAAATT+AGG | 0.217572 | 5.3:-6796062 | MS.gene21509:CDS |
| ATGGTCCTATGAAGTATAAT+TGG | 0.246951 | 5.3:-6797139 | MS.gene21509:CDS |
| ACAGTATATGAGATCTTCTT+TGG | 0.254734 | 5.3:-6795228 | MS.gene21509:intron |
| ACTTGTTTGGAATATGCTTT+TGG | 0.267147 | 5.3:+6795010 | None:intergenic |
| ACTTGGAAGTTTCCAGGAAT+TGG | 0.297749 | 5.3:-6795416 | MS.gene21509:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5.3:-6797171 | MS.gene21509:CDS |
| TATATTGAATTTCACATGTA+TGG | 0.303816 | 5.3:-6794841 | MS.gene21509:CDS |
| GGTTGCTTGAGGGTGATAAT+TGG | 0.305293 | 5.3:-6794620 | MS.gene21509:CDS |
| GGAACATGGAACACAGAATA+TGG | 0.310195 | 5.3:-6795098 | MS.gene21509:CDS |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5.3:-6795137 | MS.gene21509:CDS |
| TTATGTTGGACACATAATTA+AGG | 0.321924 | 5.3:-6794514 | MS.gene21509:CDS |
| CATCCCAATGAGATGTATTC+AGG | 0.331249 | 5.3:+6796029 | None:intergenic |
| CATTGGAATTCTCCAATTCC+TGG | 0.333977 | 5.3:+6795404 | None:intergenic |
| ATAGTTTCACTCCACTTGTT+TGG | 0.337144 | 5.3:+6794997 | None:intergenic |
| GATGGAACTTGGAAGTTTCC+AGG | 0.338985 | 5.3:-6795422 | MS.gene21509:CDS |
| ACAAGTGGACCCCATGATTC+AGG | 0.347118 | 5.3:-6795167 | MS.gene21509:CDS |
| GAAGCATCAGCTGCAGCAAT+TGG | 0.348122 | 5.3:-6795206 | MS.gene21509:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5.3:-6795079 | MS.gene21509:CDS |
| CTGTAAAGAAAGACAAGAAA+TGG | 0.352936 | 5.3:-6797367 | MS.gene21509:CDS |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.360035 | 5.3:+6794873 | None:intergenic |
| CTTATTTAAGAATAAATAAG+AGG | 0.373002 | 5.3:-6794641 | MS.gene21509:CDS |
| AGCAATGAATGCTAGTTTGA+TGG | 0.376383 | 5.3:-6797225 | MS.gene21509:CDS |
| GACAGATTTACAGATTATTT+GGG | 0.378560 | 5.3:-6795936 | MS.gene21509:CDS |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5.3:+6797269 | None:intergenic |
| TAGTTTACACAGACAAATTA+GGG | 0.386153 | 5.3:-6796061 | MS.gene21509:CDS |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5.3:-6794699 | MS.gene21509:CDS |
| TTGTCTGTGTAAACTAGCTC+AGG | 0.393606 | 5.3:+6796068 | None:intergenic |
| CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | 5.3:-6794971 | MS.gene21509:CDS |
| CTTGCTGAAGCTGATTCATA+TGG | 0.414041 | 5.3:-6794546 | MS.gene21509:CDS |
| GCTTCCCAATTATACTTCAT+AGG | 0.415265 | 5.3:+6797134 | None:intergenic |
| AAATCCTGAATACATCTCAT+TGG | 0.419556 | 5.3:-6796033 | MS.gene21509:CDS |
| CAGGAAATTCAAGTGGGACT+AGG | 0.423979 | 5.3:-6795485 | MS.gene21509:CDS |
| AGCAGGAAGAACTCCACTTC+AGG | 0.426300 | 5.3:-6795988 | MS.gene21509:CDS |
| ACGAAAGCTTCTCATGTAAT+CGG | 0.429869 | 5.3:+6795959 | None:intergenic |
| CTGATTTCTTCTAGCACCCA+TGG | 0.430727 | 5.3:+6796098 | None:intergenic |
| GGAGAATGATGTTATAATAG+AGG | 0.433712 | 5.3:-6794493 | MS.gene21509:CDS |
| CAGCAATTGGGAAGAAAGAA+TGG | 0.447375 | 5.3:-6795193 | MS.gene21509:CDS |
| GGAGTTCTTCCTGCTAGAAC+AGG | 0.447514 | 5.3:+6795996 | None:intergenic |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5.3:+6795432 | None:intergenic |
| TTGAAGAGTGCTGGTGTTGA+AGG | 0.453491 | 5.3:-6797200 | MS.gene21509:CDS |
| CATGGGTGCTAGAAGAAATC+AGG | 0.455689 | 5.3:-6796097 | MS.gene21509:CDS |
| AAACTATCTGCCAAAATAGC+TGG | 0.456022 | 5.3:-6794981 | MS.gene21509:CDS |
| TATGGGACTGATCTTTATGT+TGG | 0.456464 | 5.3:-6794528 | MS.gene21509:CDS |
| TTTGTACCTTGTCATAGCAT+TGG | 0.457100 | 5.3:+6795387 | None:intergenic |
| TTTCACATGTATGGAAATGA+AGG | 0.460068 | 5.3:-6794832 | MS.gene21509:CDS |
| ATAGCATTCCTCTACCTCCA+TGG | 0.463802 | 5.3:-6796115 | MS.gene21509:intron |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5.3:+6795440 | None:intergenic |
| TGATAATTGGAGGAAATTTG+TGG | 0.467073 | 5.3:-6794607 | MS.gene21509:CDS |
| AATCCTGAATACATCTCATT+GGG | 0.468064 | 5.3:-6796032 | MS.gene21509:CDS |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5.3:-6797177 | MS.gene21509:CDS |
| GATTGTATTGACCTGAATCA+TGG | 0.478768 | 5.3:+6795156 | None:intergenic |
| TGGTCCTATGAAGTATAATT+GGG | 0.480087 | 5.3:-6797138 | MS.gene21509:CDS |
| ATGGCAGGTGGTGAACTTGC+TGG | 0.480529 | 5.3:-6794738 | MS.gene21509:CDS |
| TTGATGGCTTTGAAGAGTGC+TGG | 0.481934 | 5.3:-6797209 | MS.gene21509:CDS |
| ACTTGATTAACCAATCCTTC+TGG | 0.487449 | 5.3:+6794777 | None:intergenic |
| ATTGGTTAATCAAGTGAGAA+TGG | 0.490106 | 5.3:-6794769 | MS.gene21509:CDS |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5.3:-6795433 | MS.gene21509:CDS |
| TAATTGTTCACCAGAAGGAT+TGG | 0.500260 | 5.3:-6794787 | MS.gene21509:CDS |
| TAGCATTCCTCTACCTCCAT+GGG | 0.501230 | 5.3:-6796114 | MS.gene21509:CDS |
| TGCTTGAGGGTGATAATTGG+AGG | 0.503043 | 5.3:-6794617 | MS.gene21509:CDS |
| TCTAGCACCCATGGAGGTAG+AGG | 0.503923 | 5.3:+6796107 | None:intergenic |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5.3:-6797269 | MS.gene21509:CDS |
| ATAAATAAGAGGTTGCTTGA+GGG | 0.505894 | 5.3:-6794630 | MS.gene21509:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5.3:-6797178 | MS.gene21509:CDS |
| GAAATGTTGGTGACTCCTGC+AGG | 0.512870 | 5.3:-6797034 | MS.gene21509:intron |
| TGTAAAGAAAGACAAGAAAT+GGG | 0.514719 | 5.3:-6797366 | MS.gene21509:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5.3:-6797047 | MS.gene21509:CDS |
| AATAAATAAGAGGTTGCTTG+AGG | 0.517623 | 5.3:-6794631 | MS.gene21509:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5.3:-6797111 | MS.gene21509:CDS |
| AGCAATTGGGAAGAAAGAAT+GGG | 0.525174 | 5.3:-6795192 | MS.gene21509:CDS |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.525311 | 5.3:-6794582 | MS.gene21509:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5.3:-6797176 | MS.gene21509:CDS |
| GATTCAGTGCCTGTTCTAGC+AGG | 0.529878 | 5.3:-6796005 | MS.gene21509:CDS |
| AGTGAGAATGGCAACAAAGA+TGG | 0.533714 | 5.3:-6794757 | MS.gene21509:CDS |
| AAGCATCAGCTGCAGCAATT+GGG | 0.535892 | 5.3:-6795205 | MS.gene21509:CDS |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5.3:-6795440 | MS.gene21509:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5.3:-6797270 | MS.gene21509:CDS |
| TGTCTGATGGTGGTAAACTA+AGG | 0.542826 | 5.3:-6794569 | MS.gene21509:CDS |
| TAATCGGAGTAGACCTGAAG+TGG | 0.543820 | 5.3:+6795975 | None:intergenic |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5.3:+6795066 | None:intergenic |
| AAAAGCATATTCCAAACAAG+TGG | 0.558992 | 5.3:-6795008 | MS.gene21509:CDS |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5.3:-6794903 | MS.gene21509:CDS |
| CTGCAGGTTACTATAACACA+AGG | 0.561651 | 5.3:-6794914 | MS.gene21509:CDS |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5.3:-6797181 | MS.gene21509:CDS |
| ATTGTATTGACCTGAATCAT+GGG | 0.566012 | 5.3:+6795157 | None:intergenic |
| GATGCTAATTGTTCACCAGA+AGG | 0.566913 | 5.3:-6794792 | MS.gene21509:CDS |
| GTTGTGAGTATGTCTGATGG+TGG | 0.571037 | 5.3:-6794579 | MS.gene21509:CDS |
| TTGCTGAAGCTGATTCATAT+GGG | 0.575219 | 5.3:-6794545 | MS.gene21509:CDS |
| TGCTGGTGTTGAAGGAGTAA+TGG | 0.577099 | 5.3:-6797192 | MS.gene21509:CDS |
| AGAATGGCAACAAAGATGGC+AGG | 0.578781 | 5.3:-6794753 | MS.gene21509:CDS |
| CATGCAACTGAATTAACTGC+AGG | 0.589620 | 5.3:-6794930 | MS.gene21509:CDS |
| AAGAAAGAATGGGGAACAAG+TGG | 0.590370 | 5.3:-6795182 | MS.gene21509:CDS |
| TGTCTGTGTAAACTAGCTCA+GGG | 0.595938 | 5.3:+6796069 | None:intergenic |
| GGATATCTCAACTCCCCACA+TGG | 0.597220 | 5.3:+6795461 | None:intergenic |
| AAGTGGGACTAGGTCCATGT+GGG | 0.602013 | 5.3:-6795475 | MS.gene21509:CDS |
| ACATTTGCAGGAAATTCAAG+TGG | 0.608489 | 5.3:-6795492 | MS.gene21509:intron |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5.3:-6795053 | MS.gene21509:CDS |
| TGGTGATTCGAATAGAGTAC+CGG | 0.636351 | 5.3:-6797306 | MS.gene21509:CDS |
| CAAGTGGGACTAGGTCCATG+TGG | 0.641124 | 5.3:-6795476 | MS.gene21509:CDS |
| GGTGAACAATTAGCATCACA+AGG | 0.655544 | 5.3:+6794798 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5.3:+6797287 | None:intergenic |
| CATTTGCAGGAAATTCAAGT+GGG | 0.665537 | 5.3:-6795491 | MS.gene21509:intron |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5.3:-6797266 | MS.gene21509:CDS |
| GCACAAATGCTAGCAAAACA+CGG | 0.667922 | 5.3:-6794867 | MS.gene21509:CDS |
| ATGGCAACAAAGATGGCAGG+TGG | 0.674756 | 5.3:-6794750 | MS.gene21509:CDS |
| TCAATACAATCAATTTCCTG+AGG | 0.679778 | 5.3:-6795144 | MS.gene21509:CDS |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5.3:-6795393 | MS.gene21509:intron |
| GCAATTGGGAAGAAAGAATG+GGG | 0.692825 | 5.3:-6795191 | MS.gene21509:CDS |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5.3:-6797279 | MS.gene21509:CDS |
| AGTGGGACTAGGTCCATGTG+GGG | 0.709601 | 5.3:-6795474 | MS.gene21509:CDS |
| CTCTATTCGAATCACCATCG+TGG | 0.716638 | 5.3:+6797312 | None:intergenic |
| TTGTATTGACCTGAATCATG+GGG | 0.724619 | 5.3:+6795158 | None:intergenic |
| ATTTCTTCTAGCACCCATGG+AGG | 0.727464 | 5.3:+6796101 | None:intergenic |
| TCTGTCACTCATAACCACGA+TGG | 0.739469 | 5.3:-6797326 | MS.gene21509:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAAATTAACATCAATT+TGG | + | chr5.3:6796170-6796189 | None:intergenic | 10.0% |
| !! | TTATTATCTATTACTATATT+AGG | + | chr5.3:6795478-6795497 | None:intergenic | 10.0% |
| !!! | AAATATAAAAAATTTGGTTT+TGG | - | chr5.3:6795175-6795194 | MS.gene21509:CDS | 10.0% |
| !!! | AACCAAAAAAATATTTTTAT+AGG | - | chr5.3:6795402-6795421 | MS.gene21509:CDS | 10.0% |
| !!! | ACCAAAAAAATATTTTTATA+GGG | - | chr5.3:6795403-6795422 | MS.gene21509:CDS | 10.0% |
| !! | AAATCATTTCATATTGAAAT+TGG | + | chr5.3:6795320-6795339 | None:intergenic | 15.0% |
| !! | CTTATTTAAGAATAAATAAG+AGG | - | chr5.3:6797245-6797264 | MS.gene21509:CDS | 15.0% |
| !! | TAAAAATAAAATTCTAGTGT+AGG | + | chr5.3:6795052-6795071 | None:intergenic | 15.0% |
| !!! | AAATATAGAATATTTGGTTT+TGG | + | chr5.3:6795371-6795390 | None:intergenic | 15.0% |
| !!! | AACCAAAAAAATATTTTTAC+AGG | + | chr5.3:6795144-6795163 | None:intergenic | 15.0% |
| !!! | ACATTTGTTCAAAATTTTAA+CGG | - | chr5.3:6796075-6796094 | MS.gene21509:CDS | 15.0% |
| !!! | ACCAAAAAAATATTTTTACA+GGG | + | chr5.3:6795143-6795162 | None:intergenic | 15.0% |
| !!! | AGTCTTAGATTTTTTATTTT+TGG | + | chr5.3:6795729-6795748 | None:intergenic | 15.0% |
| !!! | TAAAAAATCTAAGACTAATT+TGG | - | chr5.3:6795733-6795752 | MS.gene21509:intron | 15.0% |
| !!! | TACACTAGAATTTTATTTTT+AGG | - | chr5.3:6795051-6795070 | MS.gene21509:CDS | 15.0% |
| !!! | TCCCTATAAAAATATTTTTT+TGG | + | chr5.3:6795407-6795426 | None:intergenic | 15.0% |
| !! | AGGACTAAAATGAATATTAT+AGG | - | chr5.3:6795292-6795311 | MS.gene21509:intron | 20.0% |
| !! | ATTAGGCTTAAATATGAAAA+TGG | + | chr5.3:6795461-6795480 | None:intergenic | 20.0% |
| !! | CAAATATTCTACATATTACA+AGG | + | chr5.3:6795253-6795272 | None:intergenic | 20.0% |
| !! | GGACTAAAATGAATATTATA+GGG | - | chr5.3:6795293-6795312 | MS.gene21509:intron | 20.0% |
| !! | TATATTGAATTTCACATGTA+TGG | - | chr5.3:6797045-6797064 | MS.gene21509:CDS | 20.0% |
| !! | TTTAGGTAGTAATAATATAG+TGG | - | chr5.3:6795068-6795087 | MS.gene21509:CDS | 20.0% |
| !!! | AAATTGATTCATATTGGATT+TGG | - | chr5.3:6795226-6795245 | MS.gene21509:CDS | 20.0% |
| !!! | ACCAAATTTTTTATATTTGC+AGG | + | chr5.3:6795173-6795192 | None:intergenic | 20.0% |
| !!! | ATCTAAGACTTATATATATG+TGG | - | chr5.3:6795645-6795664 | MS.gene21509:intron | 20.0% |
| !!! | ATTTGTTCAAAATTTTAACG+GGG | - | chr5.3:6796077-6796096 | MS.gene21509:CDS | 20.0% |
| !!! | CAATATGAAATGATTTTACA+AGG | - | chr5.3:6795324-6795343 | MS.gene21509:intron | 20.0% |
| !!! | CAATATGAATCAATTTTACA+AGG | + | chr5.3:6795222-6795241 | None:intergenic | 20.0% |
| !!! | CATTTGTTCAAAATTTTAAC+GGG | - | chr5.3:6796076-6796095 | MS.gene21509:CDS | 20.0% |
| !!! | CCAAATTTTTTATATTTGCA+GGG | + | chr5.3:6795172-6795191 | None:intergenic | 20.0% |
| !!! | CTTGTAAAATTGATTCATAT+TGG | - | chr5.3:6795220-6795239 | MS.gene21509:CDS | 20.0% |
| !!! | TAAAATTTTGAACAAATGTG+TGG | + | chr5.3:6796074-6796093 | None:intergenic | 20.0% |
| !!! | TAGTTGAAATTTTGATCAAA+TGG | - | chr5.3:6795498-6795517 | MS.gene21509:intron | 20.0% |
| !!! | TCCCTGTAAAAATATTTTTT+TGG | - | chr5.3:6795139-6795158 | MS.gene21509:CDS | 20.0% |
| !!! | TGTTTGAAAATAAGTCATTT+TGG | + | chr5.3:6796641-6796660 | None:intergenic | 20.0% |
| ! | AAATATTCAACCACCAATTT+AGG | - | chr5.3:6794901-6794920 | MS.gene21509:CDS | 25.0% |
| ! | ACCAAAGTTATAATGATACT+TGG | - | chr5.3:6796012-6796031 | MS.gene21509:CDS | 25.0% |
| ! | ACCAAATATTCTATATTTGC+AGG | - | chr5.3:6795373-6795392 | MS.gene21509:intron | 25.0% |
| ! | ACTAACTATCTTGCTTAATA+TGG | + | chr5.3:6796241-6796260 | None:intergenic | 25.0% |
| ! | AGGATTAAAACAAAATACCA+AGG | - | chr5.3:6795344-6795363 | MS.gene21509:intron | 25.0% |
| ! | CCAAATATTCTATATTTGCA+GGG | - | chr5.3:6795374-6795393 | MS.gene21509:intron | 25.0% |
| ! | CCCTGCAAATATAAAAAATT+TGG | - | chr5.3:6795169-6795188 | MS.gene21509:CDS | 25.0% |
| ! | GAATGTAACAACTATAAACT+TGG | + | chr5.3:6794936-6794955 | None:intergenic | 25.0% |
| ! | GACAGATTTACAGATTATTT+GGG | - | chr5.3:6795950-6795969 | MS.gene21509:CDS | 25.0% |
| ! | GTGGTGAATTTATATATATG+AGG | - | chr5.3:6795664-6795683 | MS.gene21509:intron | 25.0% |
| ! | TAGTTTACACAGACAAATTA+GGG | - | chr5.3:6795825-6795844 | MS.gene21509:intron | 25.0% |
| ! | TGACAGATTTACAGATTATT+TGG | - | chr5.3:6795949-6795968 | MS.gene21509:CDS | 25.0% |
| ! | TGTAAAGAAAGACAAGAAAT+GGG | - | chr5.3:6794520-6794539 | MS.gene21509:CDS | 25.0% |
| ! | TTATGTTGGACACATAATTA+AGG | - | chr5.3:6797372-6797391 | MS.gene21509:CDS | 25.0% |
| !! | GTCTAACATCAATATGATTT+TGG | + | chr5.3:6796561-6796580 | None:intergenic | 25.0% |
| !! | TAAGTACTTCATCAATTTTG+TGG | - | chr5.3:6795987-6796006 | MS.gene21509:CDS | 25.0% |
| !! | TTATCTAAGACATTACGTTA+AGG | + | chr5.3:6796144-6796163 | None:intergenic | 25.0% |
| !!! | TTTGTTCAAAATTTTAACGG+GGG | - | chr5.3:6796078-6796097 | MS.gene21509:CDS | 25.0% |
| AAATCCTGAATACATCTCAT+TGG | - | chr5.3:6795853-6795872 | MS.gene21509:intron | 30.0% | |
| AATAAATAAGAGGTTGCTTG+AGG | - | chr5.3:6797255-6797274 | MS.gene21509:CDS | 30.0% | |
| AATCCTGAATACATCTCATT+GGG | - | chr5.3:6795854-6795873 | MS.gene21509:intron | 30.0% | |
| ACAGTATATGAGATCTTCTT+TGG | - | chr5.3:6796658-6796677 | MS.gene21509:intron | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | - | chr5.3:6797187-6797206 | MS.gene21509:CDS | 30.0% | |
| AGGACTAAAACAAAATACCA+AGG | + | chr5.3:6795202-6795221 | None:intergenic | 30.0% | |
| ATAAATAAGAGGTTGCTTGA+GGG | - | chr5.3:6797256-6797275 | MS.gene21509:CDS | 30.0% | |
| ATGGTCCTATGAAGTATAAT+TGG | - | chr5.3:6794747-6794766 | MS.gene21509:CDS | 30.0% | |
| ATTGGTTAATCAAGTGAGAA+TGG | - | chr5.3:6797117-6797136 | MS.gene21509:CDS | 30.0% | |
| CAAAATGTCAGATATTTGCA+GGG | + | chr5.3:6795112-6795131 | None:intergenic | 30.0% | |
| CCCTGCAAATATAGAATATT+TGG | + | chr5.3:6795377-6795396 | None:intergenic | 30.0% | |
| CTAGTTTACACAGACAAATT+AGG | - | chr5.3:6795824-6795843 | MS.gene21509:intron | 30.0% | |
| CTGTAAAGAAAGACAAGAAA+TGG | - | chr5.3:6794519-6794538 | MS.gene21509:CDS | 30.0% | |
| GAATTTCCTGCAAATGTATT+TGG | + | chr5.3:6796391-6796410 | None:intergenic | 30.0% | |
| GCAAGATAGTTAGTTATAAG+AGG | - | chr5.3:6796247-6796266 | MS.gene21509:intron | 30.0% | |
| GCCAAGTATCATTATAACTT+TGG | + | chr5.3:6796016-6796035 | None:intergenic | 30.0% | |
| GGAGAATGATGTTATAATAG+AGG | - | chr5.3:6797393-6797412 | MS.gene21509:CDS | 30.0% | |
| TATAACACAAGGTTTCATGA+TGG | - | chr5.3:6796983-6797002 | MS.gene21509:intron | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | - | chr5.3:6796742-6796761 | MS.gene21509:intron | 30.0% | |
| TGATAATTGGAGGAAATTTG+TGG | - | chr5.3:6797279-6797298 | MS.gene21509:CDS | 30.0% | |
| TGGTCCTATGAAGTATAATT+GGG | - | chr5.3:6794748-6794767 | MS.gene21509:CDS | 30.0% | |
| TTTCACATGTATGGAAATGA+AGG | - | chr5.3:6797054-6797073 | MS.gene21509:CDS | 30.0% | |
| ! | AAAAGCATATTCCAAACAAG+TGG | - | chr5.3:6796878-6796897 | MS.gene21509:intron | 30.0% |
| ! | ATTGTATTGACCTGAATCAT+GGG | + | chr5.3:6796732-6796751 | None:intergenic | 30.0% |
| !! | ACTTGTTTGGAATATGCTTT+TGG | + | chr5.3:6796879-6796898 | None:intergenic | 30.0% |
| !! | AGGATACTGGATTTTTCAAA+AGG | - | chr5.3:6796762-6796781 | MS.gene21509:intron | 30.0% |
| !! | CATTTTAGTCCTCATTTTGA+GGG | + | chr5.3:6795284-6795303 | None:intergenic | 30.0% |
| !! | GATCCAGAAATTTTGAAAAG+TGG | + | chr5.3:6795695-6795714 | None:intergenic | 30.0% |
| !! | GATTTTAATCCCTCAAAATG+AGG | - | chr5.3:6795272-6795291 | MS.gene21509:intron | 30.0% |
| !! | GGATACTGGATTTTTCAAAA+GGG | - | chr5.3:6796763-6796782 | MS.gene21509:intron | 30.0% |
| !! | TCATTTTAGTCCTCATTTTG+AGG | + | chr5.3:6795285-6795304 | None:intergenic | 30.0% |
| !!! | AAAAATTTGGTTTTGGTCCT+TGG | - | chr5.3:6795182-6795201 | MS.gene21509:CDS | 30.0% |
| AAACCAAAACGCCAGATATT+TGG | - | chr5.3:6795430-6795449 | MS.gene21509:CDS | 35.0% | |
| AAACTATCTGCCAAAATAGC+TGG | - | chr5.3:6796905-6796924 | MS.gene21509:intron | 35.0% | |
| AATCAATTTCCTGAGGATAC+TGG | - | chr5.3:6796749-6796768 | MS.gene21509:intron | 35.0% | |
| ACATTTGCAGGAAATTCAAG+TGG | - | chr5.3:6796394-6796413 | MS.gene21509:intron | 35.0% | |
| ACGAAAGCTTCTCATGTAAT+CGG | + | chr5.3:6795930-6795949 | None:intergenic | 35.0% | |
| ACTTGATTAACCAATCCTTC+TGG | + | chr5.3:6797112-6797131 | None:intergenic | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | - | chr5.3:6796493-6796512 | MS.gene21509:intron | 35.0% | |
| AGCAATTGGGAAGAAAGAAT+GGG | - | chr5.3:6796694-6796713 | MS.gene21509:intron | 35.0% | |
| ATAGTTTCACTCCACTTGTT+TGG | + | chr5.3:6796892-6796911 | None:intergenic | 35.0% | |
| ATGGAGATTTCTTCCTTGAT+TGG | - | chr5.3:6796807-6796826 | MS.gene21509:intron | 35.0% | |
| CATTTGCAGGAAATTCAAGT+GGG | - | chr5.3:6796395-6796414 | MS.gene21509:intron | 35.0% | |
| CCAAAATAGCTGGAATTCAT+TGG | - | chr5.3:6796915-6796934 | MS.gene21509:intron | 35.0% | |
| CCAAAATGTCAGATATTTGC+AGG | + | chr5.3:6795113-6795132 | None:intergenic | 35.0% | |
| GCTTCCCAATTATACTTCAT+AGG | + | chr5.3:6794755-6794774 | None:intergenic | 35.0% | |
| GTTCAGATGGTACAAAAACA+TGG | - | chr5.3:6794788-6794807 | MS.gene21509:CDS | 35.0% | |
| TAATTGTTCACCAGAAGGAT+TGG | - | chr5.3:6797099-6797118 | MS.gene21509:CDS | 35.0% | |
| TATGGGACTGATCTTTATGT+TGG | - | chr5.3:6797358-6797377 | MS.gene21509:CDS | 35.0% | |
| TCAAGACCAAATACATTTGC+AGG | - | chr5.3:6796382-6796401 | MS.gene21509:intron | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | + | chr5.3:6796761-6796780 | None:intergenic | 35.0% | |
| TTGGCAAATAGAGCCTAAAT+TGG | + | chr5.3:6794917-6794936 | None:intergenic | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | + | chr5.3:6797016-6797035 | None:intergenic | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | + | chr5.3:6796502-6796521 | None:intergenic | 35.0% | |
| ! | AAAGTTGTGTTGTTGTGTCA+AGG | + | chr5.3:6795574-6795593 | None:intergenic | 35.0% |
| ! | AGCAATGAATGCTAGTTTGA+TGG | - | chr5.3:6794661-6794680 | MS.gene21509:CDS | 35.0% |
| ! | ATCTACCTACAAAGGTATGT+AGG | - | chr5.3:6795020-6795039 | MS.gene21509:CDS | 35.0% |
| ! | ATGTCTTTTCATCAATGTGG+TGG | - | chr5.3:6794830-6794849 | MS.gene21509:CDS | 35.0% |
| ! | CCAATGAATTCCAGCTATTT+TGG | + | chr5.3:6796918-6796937 | None:intergenic | 35.0% |
| ! | CCTGCAAATATCTGACATTT+TGG | - | chr5.3:6795110-6795129 | MS.gene21509:CDS | 35.0% |
| ! | GATTGTATTGACCTGAATCA+TGG | + | chr5.3:6796733-6796752 | None:intergenic | 35.0% |
| ! | GTCATGTCTTTTCATCAATG+TGG | - | chr5.3:6794827-6794846 | MS.gene21509:CDS | 35.0% |
| ! | TTGCTGAAGCTGATTCATAT+GGG | - | chr5.3:6797341-6797360 | MS.gene21509:CDS | 35.0% |
| ! | TTGTATTGACCTGAATCATG+GGG | + | chr5.3:6796731-6796750 | None:intergenic | 35.0% |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | - | chr5.3:6797304-6797323 | MS.gene21509:CDS | 35.0% |
| ! | TTTTCAAAAGGGAAGGAACA+TGG | - | chr5.3:6796774-6796793 | MS.gene21509:intron | 35.0% |
| !! | ACTGGATTTTTCAAAAGGGA+AGG | - | chr5.3:6796767-6796786 | MS.gene21509:intron | 35.0% |
| !! | ATATGCTTTTGGCTGATACA+AGG | + | chr5.3:6796868-6796887 | None:intergenic | 35.0% |
| !! | CCAGAAATTTTGAAAAGTGG+AGG | + | chr5.3:6795692-6795711 | None:intergenic | 35.0% |
| !! | CCTCCACTTTTCAAAATTTC+TGG | - | chr5.3:6795689-6795708 | MS.gene21509:intron | 35.0% |
| !! | TCAAGCAAACTTGTTGAACA+TGG | - | chr5.3:6796833-6796852 | MS.gene21509:intron | 35.0% |
| !!! | GAATATTTGGTTTTGGTCCT+TGG | + | chr5.3:6795364-6795383 | None:intergenic | 35.0% |
| !!! | TTTATTTTTGGTCTCAGCGA+CGG | + | chr5.3:6795717-6795736 | None:intergenic | 35.0% |
| AAATGGTCCCTCCAAATATC+TGG | + | chr5.3:6795444-6795463 | None:intergenic | 40.0% | |
| AAGAAAGAATGGGGAACAAG+TGG | - | chr5.3:6796704-6796723 | MS.gene21509:intron | 40.0% | |
| AATGGCAACATCACAAACAC+CGG | + | chr5.3:6794602-6794621 | None:intergenic | 40.0% | |
| ACAAGCCTACATACCTTTGT+AGG | + | chr5.3:6795028-6795047 | None:intergenic | 40.0% | |
| ACTTGGAAGTTTCCAGGAAT+TGG | - | chr5.3:6796470-6796489 | MS.gene21509:intron | 40.0% | |
| AGTGAGAATGGCAACAAAGA+TGG | - | chr5.3:6797129-6797148 | MS.gene21509:CDS | 40.0% | |
| CAAAACGCCAGATATTTGGA+GGG | - | chr5.3:6795434-6795453 | MS.gene21509:CDS | 40.0% | |
| CAAGGTGTGTGTATATGTGT+GGG | + | chr5.3:6795556-6795575 | None:intergenic | 40.0% | |
| CAGCAATTGGGAAGAAAGAA+TGG | - | chr5.3:6796693-6796712 | MS.gene21509:intron | 40.0% | |
| CATCCCAATGAGATGTATTC+AGG | + | chr5.3:6795860-6795879 | None:intergenic | 40.0% | |
| CATGCAACTGAATTAACTGC+AGG | - | chr5.3:6796956-6796975 | MS.gene21509:intron | 40.0% | |
| CATTGGAATTCTCCAATTCC+TGG | + | chr5.3:6796485-6796504 | None:intergenic | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | - | chr5.3:6794617-6794636 | MS.gene21509:CDS | 40.0% | |
| CTGCAGGTTACTATAACACA+AGG | - | chr5.3:6796972-6796991 | MS.gene21509:intron | 40.0% | |
| GATGCTAATTGTTCACCAGA+AGG | - | chr5.3:6797094-6797113 | MS.gene21509:CDS | 40.0% | |
| GCAAATAGAGCCTAAATTGG+TGG | + | chr5.3:6794914-6794933 | None:intergenic | 40.0% | |
| GCAATTGGGAAGAAAGAATG+GGG | - | chr5.3:6796695-6796714 | MS.gene21509:intron | 40.0% | |
| GCACAAATGCTAGCAAAACA+CGG | - | chr5.3:6797019-6797038 | MS.gene21509:intron | 40.0% | |
| GGAACATGGAACACAGAATA+TGG | - | chr5.3:6796788-6796807 | MS.gene21509:intron | 40.0% | |
| GGTGAACAATTAGCATCACA+AGG | + | chr5.3:6797091-6797110 | None:intergenic | 40.0% | |
| GTTTGCTTGAGTACCAATCA+AGG | + | chr5.3:6796823-6796842 | None:intergenic | 40.0% | |
| TCAAGGTGTGTGTATATGTG+TGG | + | chr5.3:6795557-6795576 | None:intergenic | 40.0% | |
| TCCAAGTTCCATCAGTTTCA+GGG | + | chr5.3:6796457-6796476 | None:intergenic | 40.0% | |
| TGGTGATTCGAATAGAGTAC+CGG | - | chr5.3:6794580-6794599 | MS.gene21509:CDS | 40.0% | |
| TGTCTGTGTAAACTAGCTCA+GGG | + | chr5.3:6795820-6795839 | None:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | - | chr5.3:6794607-6794626 | MS.gene21509:CDS | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | + | chr5.3:6796458-6796477 | None:intergenic | 40.0% | |
| TTGTCTGTGTAAACTAGCTC+AGG | + | chr5.3:6795821-6795840 | None:intergenic | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | - | chr5.3:6794705-6794724 | MS.gene21509:CDS | 40.0% |
| ! | AAGTGTTGTGTGGTTTGTGT+GGG | + | chr5.3:6795524-6795543 | None:intergenic | 40.0% |
| ! | ACCACACAACACTTTTCTCT+TGG | - | chr5.3:6795530-6795549 | MS.gene21509:intron | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | - | chr5.3:6794709-6794728 | MS.gene21509:CDS | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | - | chr5.3:6794839-6794858 | MS.gene21509:CDS | 40.0% |
| ! | CTTGCTGAAGCTGATTCATA+TGG | - | chr5.3:6797340-6797359 | MS.gene21509:CDS | 40.0% |
| ! | TAGTCTTGCAAGACCAAACA+GGG | - | chr5.3:6794993-6795012 | MS.gene21509:CDS | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | - | chr5.3:6794728-6794747 | MS.gene21509:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | - | chr5.3:6794775-6794794 | MS.gene21509:CDS | 40.0% |
| !! | AAAGTGTTGTGTGGTTTGTG+TGG | + | chr5.3:6795525-6795544 | None:intergenic | 40.0% |
| !! | AGTGTTATTTGCATACCTGC+AGG | + | chr5.3:6794870-6794889 | None:intergenic | 40.0% |
| !! | GGTCAAGTTTTGTCAACAAG+TGG | - | chr5.3:6797208-6797227 | MS.gene21509:CDS | 40.0% |
| !! | TGTCTGATGGTGGTAAACTA+AGG | - | chr5.3:6797317-6797336 | MS.gene21509:CDS | 40.0% |
| AAGCATCAGCTGCAGCAATT+GGG | - | chr5.3:6796681-6796700 | MS.gene21509:intron | 45.0% | |
| AATCAGATGCGAGATCGCAT+GGG | - | chr5.3:6795600-6795619 | MS.gene21509:intron | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | - | chr5.3:6796453-6796472 | MS.gene21509:intron | 45.0% | |
| AGAATGGCAACAAAGATGGC+AGG | - | chr5.3:6797133-6797152 | MS.gene21509:CDS | 45.0% | |
| ATAGCATTCCTCTACCTCCA+TGG | - | chr5.3:6795771-6795790 | MS.gene21509:intron | 45.0% | |
| ATTTCTTCTAGCACCCATGG+AGG | + | chr5.3:6795788-6795807 | None:intergenic | 45.0% | |
| CAGGAAATTCAAGTGGGACT+AGG | - | chr5.3:6796401-6796420 | MS.gene21509:intron | 45.0% | |
| CATGGGTGCTAGAAGAAATC+AGG | - | chr5.3:6795789-6795808 | MS.gene21509:intron | 45.0% | |
| CCAAAACGCCAGATATTTGG+AGG | - | chr5.3:6795433-6795452 | MS.gene21509:CDS | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | + | chr5.3:6796449-6796468 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | - | chr5.3:6796446-6796465 | MS.gene21509:intron | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | + | chr5.3:6794620-6794639 | None:intergenic | 45.0% | |
| CTCTATTCGAATCACCATCG+TGG | + | chr5.3:6794577-6794596 | None:intergenic | 45.0% | |
| CTGATTTCTTCTAGCACCCA+TGG | + | chr5.3:6795791-6795810 | None:intergenic | 45.0% | |
| GATGGAACTTGGAAGTTTCC+AGG | - | chr5.3:6796464-6796483 | MS.gene21509:intron | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | - | chr5.3:6794616-6794635 | MS.gene21509:CDS | 45.0% | |
| GGTTGCTTGAGGGTGATAAT+TGG | - | chr5.3:6797266-6797285 | MS.gene21509:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | - | chr5.3:6797307-6797326 | MS.gene21509:CDS | 45.0% | |
| TAACGGGGGCTATATATCGT+CGG | - | chr5.3:6796092-6796111 | MS.gene21509:CDS | 45.0% | |
| TAATCGGAGTAGACCTGAAG+TGG | + | chr5.3:6795914-6795933 | None:intergenic | 45.0% | |
| TAGCATTCCTCTACCTCCAT+GGG | - | chr5.3:6795772-6795791 | MS.gene21509:intron | 45.0% | |
| TCTGTCACTCATAACCACGA+TGG | - | chr5.3:6794560-6794579 | MS.gene21509:CDS | 45.0% | |
| TGCTTGAGGGTGATAATTGG+AGG | - | chr5.3:6797269-6797288 | MS.gene21509:CDS | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | - | chr5.3:6794620-6794639 | MS.gene21509:CDS | 45.0% | |
| ! | CCTCCAAATATCTGGCGTTT+TGG | + | chr5.3:6795436-6795455 | None:intergenic | 45.0% |
| ! | GAGTAATGGTTGATGCTTGG+TGG | - | chr5.3:6794708-6794727 | MS.gene21509:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | - | chr5.3:6794710-6794729 | MS.gene21509:CDS | 45.0% |
| ! | TGCTGGTGTTGAAGGAGTAA+TGG | - | chr5.3:6794694-6794713 | MS.gene21509:CDS | 45.0% |
| !! | CTAGTCTTGCAAGACCAAAC+AGG | - | chr5.3:6794992-6795011 | MS.gene21509:CDS | 45.0% |
| !! | GCCAAGAGAAAAGTGTTGTG+TGG | + | chr5.3:6795534-6795553 | None:intergenic | 45.0% |
| !! | TTGAAGAGTGCTGGTGTTGA+AGG | - | chr5.3:6794686-6794705 | MS.gene21509:CDS | 45.0% |
| !! | TTGATGGCTTTGAAGAGTGC+TGG | - | chr5.3:6794677-6794696 | MS.gene21509:CDS | 45.0% |
| AAGTGGGACTAGGTCCATGT+GGG | - | chr5.3:6796411-6796430 | MS.gene21509:intron | 50.0% | |
| ACAAGTGGACCCCATGATTC+AGG | - | chr5.3:6796719-6796738 | MS.gene21509:intron | 50.0% | |
| AGCAGGAAGAACTCCACTTC+AGG | - | chr5.3:6795898-6795917 | MS.gene21509:intron | 50.0% | |
| AGGGACGGATCTACCTACAA+AGG | - | chr5.3:6795012-6795031 | MS.gene21509:CDS | 50.0% | |
| ATGGCAACAAAGATGGCAGG+TGG | - | chr5.3:6797136-6797155 | MS.gene21509:CDS | 50.0% | |
| CTTGCAAGACCAAACAGGGA+CGG | - | chr5.3:6794997-6795016 | MS.gene21509:CDS | 50.0% | |
| GAATCAGATGCGAGATCGCA+TGG | - | chr5.3:6795599-6795618 | MS.gene21509:intron | 50.0% | |
| GAGATCGCATGGGAGATGAA+TGG | - | chr5.3:6795610-6795629 | MS.gene21509:intron | 50.0% | |
| GATTCAGTGCCTGTTCTAGC+AGG | - | chr5.3:6795881-6795900 | MS.gene21509:intron | 50.0% | |
| GGAGTTCTTCCTGCTAGAAC+AGG | + | chr5.3:6795893-6795912 | None:intergenic | 50.0% | |
| GGATATCTCAACTCCCCACA+TGG | + | chr5.3:6796428-6796447 | None:intergenic | 50.0% | |
| TAGGTAGATCCGTCCCTGTT+TGG | + | chr5.3:6795009-6795028 | None:intergenic | 50.0% | |
| ! | GAAGCATCAGCTGCAGCAAT+TGG | - | chr5.3:6796680-6796699 | MS.gene21509:intron | 50.0% |
| !! | GAAATGTTGGTGACTCCTGC+AGG | - | chr5.3:6794852-6794871 | MS.gene21509:CDS | 50.0% |
| AGTGGGACTAGGTCCATGTG+GGG | - | chr5.3:6796412-6796431 | MS.gene21509:intron | 55.0% | |
| ATGGCAGGTGGTGAACTTGC+TGG | - | chr5.3:6797148-6797167 | MS.gene21509:CDS | 55.0% | |
| CAAGTGGGACTAGGTCCATG+TGG | - | chr5.3:6796410-6796429 | MS.gene21509:intron | 55.0% | |
| TCTAGCACCCATGGAGGTAG+AGG | + | chr5.3:6795782-6795801 | None:intergenic | 55.0% | |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | - | chr5.3:6794715-6794734 | MS.gene21509:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6794479 | 6797429 | 6794479 | ID=MS.gene21509 |
| chr5.3 | mRNA | 6794479 | 6797429 | 6794479 | ID=MS.gene21509.t1;Parent=MS.gene21509 |
| chr5.3 | exon | 6797035 | 6797429 | 6797035 | ID=MS.gene21509.t1.exon1;Parent=MS.gene21509.t1 |
| chr5.3 | CDS | 6797035 | 6797429 | 6797035 | ID=cds.MS.gene21509.t1;Parent=MS.gene21509.t1 |
| chr5.3 | exon | 6795923 | 6796133 | 6795923 | ID=MS.gene21509.t1.exon2;Parent=MS.gene21509.t1 |
| chr5.3 | CDS | 6795923 | 6796133 | 6795923 | ID=cds.MS.gene21509.t1;Parent=MS.gene21509.t1 |
| chr5.3 | exon | 6795394 | 6795504 | 6795394 | ID=MS.gene21509.t1.exon3;Parent=MS.gene21509.t1 |
| chr5.3 | CDS | 6795394 | 6795504 | 6795394 | ID=cds.MS.gene21509.t1;Parent=MS.gene21509.t1 |
| chr5.3 | exon | 6794479 | 6795246 | 6794479 | ID=MS.gene21509.t1.exon4;Parent=MS.gene21509.t1 |
| chr5.3 | CDS | 6794479 | 6795246 | 6794479 | ID=cds.MS.gene21509.t1;Parent=MS.gene21509.t1 |
| Gene Sequence |
| Protein sequence |
