Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21531.t1 | XP_003611374.1 | 95 | 240 | 12 | 0 | 1 | 240 | 53 | 292 | 1.50E-102 | 382.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21531.t1 | G7JXH5 | 95.0 | 240 | 12 | 0 | 1 | 240 | 53 | 292 | 1.0e-102 | 382.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053836 | MS.gene21531 | 0.800992 | 1.11E-48 | -1.69E-46 |
| MS.gene054184 | MS.gene21531 | 0.807947 | 3.94E-50 | -1.69E-46 |
| MS.gene054185 | MS.gene21531 | 0.813569 | 2.40E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene21531 | 0.807971 | 3.90E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene21531 | 0.807012 | 6.22E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21531.t1 | MTR_5g013280 | 94.583 | 240 | 13 | 0 | 1 | 240 | 53 | 292 | 1.74e-151 | 423 |
| MS.gene21531.t1 | MTR_5g013280 | 94.118 | 221 | 13 | 0 | 1 | 221 | 6 | 226 | 1.89e-136 | 384 |
| MS.gene21531.t1 | MTR_5g013280 | 94.118 | 221 | 13 | 0 | 1 | 221 | 53 | 273 | 1.11e-135 | 383 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21531.t1 | AT4G17540 | 41.228 | 228 | 103 | 4 | 1 | 224 | 71 | 271 | 2.89e-36 | 130 |
Find 56 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCACAGGCGCAGTCAGTTC+TGG | 0.305051 | 5.3:+6227660 | MS.gene21531:CDS |
| TTCATATAGTTGAGGAAGAT+TGG | 0.320215 | 5.3:+6226747 | MS.gene21531:intron |
| CAAGTTCTTCAATCATTTGC+TGG | 0.323313 | 5.3:-6229377 | None:intergenic |
| CAGTTATCTCAAGGTCTAGT+AGG | 0.335039 | 5.3:+6227717 | MS.gene21531:CDS |
| GTTGGATGTGGAGTTGGTTT+CGG | 0.345001 | 5.3:+6226792 | MS.gene21531:CDS |
| ACAAAGATGATGATGAAGTT+TGG | 0.354809 | 5.3:+6227582 | MS.gene21531:CDS |
| ACCCGGATTAAACGGTAAAC+TGG | 0.357165 | 5.3:-6227613 | None:intergenic |
| AGAACTAGCTTCAAGTTTGC+TGG | 0.358017 | 5.3:-6229454 | None:intergenic |
| TCCCAGTTTACCGTTTAATC+CGG | 0.367717 | 5.3:+6227611 | MS.gene21531:CDS |
| AAACTTGAAGCTAGTTCTTC+AGG | 0.400339 | 5.3:+6229459 | MS.gene21531:CDS |
| TCAACCAATGAACATTGGTT+TGG | 0.414979 | 5.3:+6227743 | MS.gene21531:CDS |
| TCTGCAAAATCCACTGTTGA+AGG | 0.419732 | 5.3:+6227845 | MS.gene21531:CDS |
| AAAGCCAAACCAATGTTCAT+TGG | 0.422194 | 5.3:-6227747 | None:intergenic |
| GTGGGTGTTGGATGTGGAGT+TGG | 0.433318 | 5.3:+6226786 | MS.gene21531:CDS |
| GGCAATGCACCCGGATTAAA+CGG | 0.440473 | 5.3:-6227621 | None:intergenic |
| ATCAAGTTATGAGTGCTACT+AGG | 0.451482 | 5.3:+6226603 | None:intergenic |
| TGCGCCTGTGGCACTTTGTA+AGG | 0.455121 | 5.3:-6227649 | None:intergenic |
| ATGAGAGCTTACTGATTCGC+TGG | 0.460415 | 5.3:-6227883 | None:intergenic |
| TCAAGTTATGAGTGCTACTA+GGG | 0.471040 | 5.3:+6226604 | None:intergenic |
| TGTGGAGTTGGTTTCGGTCA+TGG | 0.472934 | 5.3:+6226798 | MS.gene21531:CDS |
| ACAGGACTTGCTGTGAAACC+TGG | 0.477065 | 5.3:+6227433 | MS.gene21531:intron |
| GTTGGTTTCGGTCATGGTGT+TGG | 0.481887 | 5.3:+6226804 | MS.gene21531:CDS |
| ATTGAAGTGGGTGTTGGATG+TGG | 0.485704 | 5.3:+6226780 | MS.gene21531:CDS |
| TGGAGGAAAATGAGAAGCTT+CGG | 0.486885 | 5.3:+6229400 | MS.gene21531:CDS |
| CCTCCTTCTCCCTTCAACAG+TGG | 0.488432 | 5.3:-6227855 | None:intergenic |
| ACTTCAGCCGACTCTACATA+TGG | 0.500649 | 5.3:+6227792 | MS.gene21531:CDS |
| TTCGGTCATGGTGTTGGAGT+TGG | 0.502955 | 5.3:+6226810 | MS.gene21531:CDS |
| CCCAGTTTACCGTTTAATCC+GGG | 0.504429 | 5.3:+6227612 | MS.gene21531:CDS |
| TGAATTTGATTCAACACCCC+AGG | 0.508485 | 5.3:-6227451 | None:intergenic |
| TCCAGAACTGACTGCGCCTG+TGG | 0.525943 | 5.3:-6227661 | None:intergenic |
| CTGCAAAATCCACTGTTGAA+GGG | 0.528070 | 5.3:+6227846 | MS.gene21531:CDS |
| AAGAATATTGAAGTGGGTGT+TGG | 0.528611 | 5.3:+6226774 | MS.gene21531:CDS |
| GTGGCACTTTGTAAGGATGC+TGG | 0.546253 | 5.3:-6227642 | None:intergenic |
| CCCGGATTAAACGGTAAACT+GGG | 0.556288 | 5.3:-6227612 | None:intergenic |
| GCAAATGATTGAAGAACTTG+TGG | 0.559081 | 5.3:+6229380 | MS.gene21531:CDS |
| AAGGATGCTGGCAATGCACC+CGG | 0.560291 | 5.3:-6227630 | None:intergenic |
| GCATCCTTACAAAGTGCCAC+AGG | 0.560303 | 5.3:+6227645 | MS.gene21531:CDS |
| CAGGACTTGCTGTGAAACCT+GGG | 0.561209 | 5.3:+6227434 | MS.gene21531:intron |
| AGAGAACAAAATACTTCAGA+TGG | 0.561726 | 5.3:+6229205 | MS.gene21531:CDS |
| AGTTATCTCAAGGTCTAGTA+GGG | 0.564091 | 5.3:+6227718 | MS.gene21531:CDS |
| CTAGCTTCAAGTTTGCTGGA+TGG | 0.583563 | 5.3:-6229450 | None:intergenic |
| TGAGAGCTTACTGATTCGCT+GGG | 0.586043 | 5.3:-6227882 | None:intergenic |
| AATCCACTGTTGAAGGGAGA+AGG | 0.589188 | 5.3:+6227852 | MS.gene21531:CDS |
| TCAGCTGATCAGTTATCTCA+AGG | 0.590242 | 5.3:+6227708 | MS.gene21531:CDS |
| ATATGGCAGTCGAACTGAGA+AGG | 0.597072 | 5.3:+6227809 | MS.gene21531:CDS |
| TGGAGCTAAGAATATTGAAG+TGG | 0.597204 | 5.3:+6226767 | MS.gene21531:CDS |
| CCACTGTTGAAGGGAGAAGG+AGG | 0.603974 | 5.3:+6227855 | MS.gene21531:CDS |
| GGAGCTAAGAATATTGAAGT+GGG | 0.605534 | 5.3:+6226768 | MS.gene21531:CDS |
| AATGATTGAAGAACTTGTGG+AGG | 0.616671 | 5.3:+6229383 | MS.gene21531:CDS |
| CTGTTGAAGGGAGAAGGAGG+AGG | 0.623525 | 5.3:+6227858 | MS.gene21531:CDS |
| TCGACTGCCATATGTAGAGT+CGG | 0.624499 | 5.3:-6227799 | None:intergenic |
| TGTTTGCAGATCTTTACACC+CGG | 0.625864 | 5.3:+6231145 | MS.gene21531:intron |
| GGGTCTCAACCAATGAACAT+TGG | 0.632984 | 5.3:+6227738 | MS.gene21531:CDS |
| GCTTCGGCAGATACTAGTGA+AGG | 0.640377 | 5.3:+6229416 | MS.gene21531:CDS |
| AGGACTTGCTGTGAAACCTG+GGG | 0.707838 | 5.3:+6227435 | MS.gene21531:intron |
| CAAGTTATGAGTGCTACTAG+GGG | 0.719794 | 5.3:+6226605 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAAACAATTAGA+AGG | + | chr5.3:6230559-6230578 | MS.gene21531:intron | 10.0% |
| !! | AACTAAATATGTATATATAT+TGG | - | chr5.3:6229071-6229090 | None:intergenic | 10.0% |
| !! | AATAAATAAAACAATTAGAA+GGG | + | chr5.3:6230560-6230579 | MS.gene21531:intron | 10.0% |
| !!! | AATTTTACAAAATACTATTT+TGG | - | chr5.3:6228308-6228327 | None:intergenic | 10.0% |
| !!! | ATTATTTCTTAATTTTTCTT+GGG | - | chr5.3:6229809-6229828 | None:intergenic | 10.0% |
| !!! | TATTATTTCTTAATTTTTCT+TGG | - | chr5.3:6229810-6229829 | None:intergenic | 10.0% |
| !!! | TATTGTTATTTTTTTCTAAA+CGG | + | chr5.3:6228471-6228490 | MS.gene21531:intron | 10.0% |
| !! | ATAATATAGTAAAAGATACA+TGG | + | chr5.3:6229824-6229843 | MS.gene21531:intron | 15.0% |
| !! | TAATATAGTAAAAGATACAT+GGG | + | chr5.3:6229825-6229844 | MS.gene21531:intron | 15.0% |
| !!! | CAAATTTTTTTAGATCATTT+AGG | + | chr5.3:6226981-6227000 | MS.gene21531:intron | 15.0% |
| !!! | TGTTTATTTATTTTTTCCTA+TGG | + | chr5.3:6229337-6229356 | MS.gene21531:intron | 15.0% |
| !!! | TTGTTTCTTTATATACTTTT+TGG | + | chr5.3:6228916-6228935 | MS.gene21531:intron | 15.0% |
| !!! | TTTTCTTTTATTATTATGAC+AGG | + | chr5.3:6227415-6227434 | MS.gene21531:intron | 15.0% |
| !!! | TTTTGAATTATTGATCATTT+AGG | + | chr5.3:6226928-6226947 | MS.gene21531:intron | 15.0% |
| !!! | TTTTTTTAGAGATGATATTT+TGG | + | chr5.3:6230529-6230548 | MS.gene21531:intron | 15.0% |
| !! | AAAATTAATCAATCAACGAA+AGG | + | chr5.3:6230966-6230985 | MS.gene21531:intron | 20.0% |
| !! | AAATTAATCAATCAACGAAA+GGG | + | chr5.3:6230967-6230986 | MS.gene21531:intron | 20.0% |
| !! | AATACAAGAAAACATATTAC+TGG | + | chr5.3:6230331-6230350 | MS.gene21531:intron | 20.0% |
| !! | AGAGATTTAAAAATATTGGT+TGG | - | chr5.3:6230107-6230126 | None:intergenic | 20.0% |
| !! | TGATTGTTTAAACACTATTA+GGG | - | chr5.3:6230786-6230805 | None:intergenic | 20.0% |
| !! | TGTAACTTTAAGTGTATTTA+GGG | + | chr5.3:6226902-6226921 | MS.gene21531:intron | 20.0% |
| !! | TTGATTGTTTAAACACTATT+AGG | - | chr5.3:6230787-6230806 | None:intergenic | 20.0% |
| !! | TTGTAACTTTAAGTGTATTT+AGG | + | chr5.3:6226901-6226920 | MS.gene21531:intron | 20.0% |
| !! | TTTCAAATATCACATTTGTT+TGG | + | chr5.3:6228677-6228696 | MS.gene21531:intron | 20.0% |
| !!! | AAGGAAGAGATTTTAATATA+GGG | - | chr5.3:6230148-6230167 | None:intergenic | 20.0% |
| !!! | ATCTATTCATGAGTTTTTTT+TGG | - | chr5.3:6228332-6228351 | None:intergenic | 20.0% |
| !!! | ATGACTTTTATATTCCATTT+TGG | + | chr5.3:6230929-6230948 | MS.gene21531:intron | 20.0% |
| !!! | CATAATATTGAAAATTTTCC+AGG | + | chr5.3:6227013-6227032 | MS.gene21531:intron | 20.0% |
| !!! | TATTTCAAATTTTAGTTGTC+TGG | + | chr5.3:6229925-6229944 | MS.gene21531:intron | 20.0% |
| !!! | TCTATTCATGAGTTTTTTTT+GGG | - | chr5.3:6228331-6228350 | None:intergenic | 20.0% |
| !!! | TGTGATTATAACTTTTACAT+GGG | + | chr5.3:6230837-6230856 | MS.gene21531:intron | 20.0% |
| !!! | TTATTTTTTCCTATGGTTAT+AGG | + | chr5.3:6229344-6229363 | MS.gene21531:intron | 20.0% |
| !!! | TTGTGATTATAACTTTTACA+TGG | + | chr5.3:6230836-6230855 | MS.gene21531:intron | 20.0% |
| !!! | TTTTTTTTAAGAAGCCAAAA+TGG | - | chr5.3:6230946-6230965 | None:intergenic | 20.0% |
| ! | AAACTCATGAATAGATATGT+TGG | + | chr5.3:6228336-6228355 | MS.gene21531:intron | 25.0% |
| ! | AAAGAAAATATGGAAAGGAT+GGG | - | chr5.3:6227305-6227324 | None:intergenic | 25.0% |
| ! | AACAAGACCCAAAAAAATTA+AGG | - | chr5.3:6229634-6229653 | None:intergenic | 25.0% |
| ! | AACTCATGAATAGATATGTT+GGG | + | chr5.3:6228337-6228356 | MS.gene21531:intron | 25.0% |
| ! | AAGAAAACAAAGAAGAAAGT+AGG | + | chr5.3:6229527-6229546 | MS.gene21531:intron | 25.0% |
| ! | ACAAGACCCAAAAAAATTAA+GGG | - | chr5.3:6229633-6229652 | None:intergenic | 25.0% |
| ! | ATCTATGATCTATAATAGAC+AGG | - | chr5.3:6227076-6227095 | None:intergenic | 25.0% |
| ! | ATGAAGTGGTAAAGAAAATA+TGG | - | chr5.3:6227315-6227334 | None:intergenic | 25.0% |
| ! | ATTCCTTAAACAATGTCATT+AGG | + | chr5.3:6230894-6230913 | MS.gene21531:intron | 25.0% |
| ! | CTCAAGAAAATTTAAGTACA+AGG | + | chr5.3:6228723-6228742 | MS.gene21531:intron | 25.0% |
| ! | GAGAGAATATTTCTTTAGTT+TGG | + | chr5.3:6230044-6230063 | MS.gene21531:intron | 25.0% |
| ! | GGTGAGAGATTTAAAAATAT+TGG | - | chr5.3:6230111-6230130 | None:intergenic | 25.0% |
| ! | TAAAAAATCCTCATTCCAAA+TGG | - | chr5.3:6228122-6228141 | None:intergenic | 25.0% |
| ! | TAAAGAAAATATGGAAAGGA+TGG | - | chr5.3:6227306-6227325 | None:intergenic | 25.0% |
| ! | TAAATAATCTGCTTAGTCAA+GGG | + | chr5.3:6230675-6230694 | MS.gene21531:intron | 25.0% |
| ! | TGAATTATTGATCATTTAGG+AGG | + | chr5.3:6226931-6226950 | MS.gene21531:intron | 25.0% |
| ! | TGCAACAAAAAAAAAGTAAG+AGG | - | chr5.3:6230256-6230275 | None:intergenic | 25.0% |
| ! | TTAAACATGAGATACACAAA+AGG | - | chr5.3:6227537-6227556 | None:intergenic | 25.0% |
| ! | TTAAATAATCTGCTTAGTCA+AGG | + | chr5.3:6230674-6230693 | MS.gene21531:intron | 25.0% |
| !! | AATATTGAAAATTTTCCAGG+AGG | + | chr5.3:6227016-6227035 | MS.gene21531:intron | 25.0% |
| !! | ATTTTCTTTACCACTTCATA+TGG | + | chr5.3:6227316-6227335 | MS.gene21531:intron | 25.0% |
| !! | TGATATTTAAGATACATTGC+AGG | + | chr5.3:6229166-6229185 | MS.gene21531:intron | 25.0% |
| !! | TTAAATTTTCTTGAGACAGA+GGG | - | chr5.3:6228718-6228737 | None:intergenic | 25.0% |
| !! | TTTTCTTTACCACTTCATAT+GGG | + | chr5.3:6227317-6227336 | MS.gene21531:intron | 25.0% |
| !!! | ACTTGTTTTTCATATAGTTG+AGG | + | chr5.3:6226739-6226758 | MS.gene21531:intron | 25.0% |
| !!! | AGATCTCCCTTAATTTTTTT+GGG | + | chr5.3:6229624-6229643 | MS.gene21531:intron | 25.0% |
| !!! | AGGAAGAGATTTTAATATAG+GGG | - | chr5.3:6230147-6230166 | None:intergenic | 25.0% |
| !!! | AGTTTTATTTCATCACATTC+TGG | + | chr5.3:6230393-6230412 | MS.gene21531:intron | 25.0% |
| !!! | ATTTGGAATGAGGATTTTTT+AGG | + | chr5.3:6228121-6228140 | MS.gene21531:intron | 25.0% |
| !!! | GAAGGAAGAGATTTTAATAT+AGG | - | chr5.3:6230149-6230168 | None:intergenic | 25.0% |
| !!! | GTTTTTTAATATACAGTTCG+AGG | - | chr5.3:6227114-6227133 | None:intergenic | 25.0% |
| !!! | TTTAGAGATGATATTTTGGA+AGG | + | chr5.3:6230533-6230552 | MS.gene21531:intron | 25.0% |
| !!! | TTTGGAATGAGGATTTTTTA+GGG | + | chr5.3:6228122-6228141 | MS.gene21531:intron | 25.0% |
| AAAAATTAAGGGAGATCTCA+CGG | - | chr5.3:6229622-6229641 | None:intergenic | 30.0% | |
| ACTAATTAGCATTAGATGAC+AGG | + | chr5.3:6229745-6229764 | MS.gene21531:intron | 30.0% | |
| ACTCATGAATAGATATGTTG+GGG | + | chr5.3:6228338-6228357 | MS.gene21531:intron | 30.0% | |
| AGAGAACAAAATACTTCAGA+TGG | + | chr5.3:6229205-6229224 | MS.gene21531:CDS | 30.0% | |
| CAAAACAGTTAACATGATTC+AGG | - | chr5.3:6230452-6230471 | None:intergenic | 30.0% | |
| CACTTTATGCTTCACATAAA+TGG | + | chr5.3:6228023-6228042 | MS.gene21531:intron | 30.0% | |
| CATCCTAATGACATTGTTTA+AGG | - | chr5.3:6230900-6230919 | None:intergenic | 30.0% | |
| CATTCTTCTACAATGTTACA+AGG | + | chr5.3:6230278-6230297 | MS.gene21531:intron | 30.0% | |
| CCAATTACAGGATATAGTAT+AGG | + | chr5.3:6229686-6229705 | MS.gene21531:intron | 30.0% | |
| CCTATACTATATCCTGTAAT+TGG | - | chr5.3:6229689-6229708 | None:intergenic | 30.0% | |
| GTGGTAAAGAAAATATGGAA+AGG | - | chr5.3:6227310-6227329 | None:intergenic | 30.0% | |
| GTTTCAAAACCTATAACCAT+AGG | - | chr5.3:6229356-6229375 | None:intergenic | 30.0% | |
| TGAAGAATGTTCACAAAACA+TGG | - | chr5.3:6227380-6227399 | None:intergenic | 30.0% | |
| TTCATATAGTTGAGGAAGAT+TGG | + | chr5.3:6226747-6226766 | MS.gene21531:intron | 30.0% | |
| TTGTTGAGACTGGAAAAATA+TGG | + | chr5.3:6228775-6228794 | MS.gene21531:intron | 30.0% | |
| ! | ACAAAGATGATGATGAAGTT+TGG | + | chr5.3:6227582-6227601 | MS.gene21531:CDS | 30.0% |
| ! | CTGAATCATGTTAACTGTTT+TGG | + | chr5.3:6230450-6230469 | MS.gene21531:intron | 30.0% |
| ! | CTTAAATTTTCTTGAGACAG+AGG | - | chr5.3:6228719-6228738 | None:intergenic | 30.0% |
| ! | GCAAGAATCAAATTTTTCCT+AGG | - | chr5.3:6228259-6228278 | None:intergenic | 30.0% |
| ! | TAAATTTTCTTGAGACAGAG+GGG | - | chr5.3:6228717-6228736 | None:intergenic | 30.0% |
| ! | TTTGGAAAACCAAACACTTT+TGG | - | chr5.3:6228290-6228309 | None:intergenic | 30.0% |
| !! | ACAAGGGAAGAGATTTTAAT+GGG | - | chr5.3:6230080-6230099 | None:intergenic | 30.0% |
| !! | AGAGATTTTAATATAGGGGA+AGG | - | chr5.3:6230143-6230162 | None:intergenic | 30.0% |
| !! | GAGATTTTAATATAGGGGAA+GGG | - | chr5.3:6230142-6230161 | None:intergenic | 30.0% |
| !! | TACTTTTTGGTGATTAACTG+TGG | + | chr5.3:6228929-6228948 | MS.gene21531:intron | 30.0% |
| !! | TATTCTCTCTTTTTGAAGAC+CGG | - | chr5.3:6231167-6231186 | None:intergenic | 30.0% |
| !! | TCAGTTCTGATACATTTTCA+CGG | + | chr5.3:6230477-6230496 | MS.gene21531:intron | 30.0% |
| !! | TCTACTAGCCTAAATTTTGT+GGG | + | chr5.3:6230223-6230242 | MS.gene21531:intron | 30.0% |
| !!! | AGGATTTTTTAGGGCTATAA+GGG | + | chr5.3:6228131-6228150 | MS.gene21531:intron | 30.0% |
| !!! | CATACTTTTCCAAAAGTGTT+TGG | + | chr5.3:6228278-6228297 | MS.gene21531:intron | 30.0% |
| !!! | GAGATCTCCCTTAATTTTTT+TGG | + | chr5.3:6229623-6229642 | MS.gene21531:intron | 30.0% |
| !!! | TTGTTGATTTTTTTTTGCGC+TGG | + | chr5.3:6229291-6229310 | MS.gene21531:intron | 30.0% |
| !!! | TTTTGGCGATAATGGAATTT+GGG | + | chr5.3:6228361-6228380 | MS.gene21531:intron | 30.0% |
| !!! | TTTTTTCTAAACGGTATCCT+GGG | + | chr5.3:6228480-6228499 | MS.gene21531:intron | 30.0% |
| !!! | TTTTTTTCTAAACGGTATCC+TGG | + | chr5.3:6228479-6228498 | MS.gene21531:intron | 30.0% |
| AAAGCCAAACCAATGTTCAT+TGG | - | chr5.3:6227750-6227769 | None:intergenic | 35.0% | |
| AAATATGGAAAGGATGGGAT+AGG | - | chr5.3:6227300-6227319 | None:intergenic | 35.0% | |
| AAATATGGTTATCTGCTGAG+AGG | + | chr5.3:6228790-6228809 | MS.gene21531:intron | 35.0% | |
| AAGAATATTGAAGTGGGTGT+TGG | + | chr5.3:6226774-6226793 | MS.gene21531:CDS | 35.0% | |
| AATGATTGAAGAACTTGTGG+AGG | + | chr5.3:6229383-6229402 | MS.gene21531:CDS | 35.0% | |
| AGATGACAGGTATTTAGGAA+TGG | + | chr5.3:6229758-6229777 | MS.gene21531:intron | 35.0% | |
| AGTAAAAGATACATGGGCAA+GGG | + | chr5.3:6229831-6229850 | MS.gene21531:intron | 35.0% | |
| AGTTATCTCAAGGTCTAGTA+GGG | + | chr5.3:6227718-6227737 | MS.gene21531:CDS | 35.0% | |
| CAAGTTCTTCAATCATTTGC+TGG | - | chr5.3:6229380-6229399 | None:intergenic | 35.0% | |
| CACTCAAAACAATCAGTACA+TGG | - | chr5.3:6229504-6229523 | None:intergenic | 35.0% | |
| CAGAAAAAACTCACGAAAGA+GGG | - | chr5.3:6229120-6229139 | None:intergenic | 35.0% | |
| CATCTTTGTCATTGTCATCT+AGG | - | chr5.3:6227571-6227590 | None:intergenic | 35.0% | |
| CTTCTCTACGTTAAACCAAA+CGG | + | chr5.3:6230165-6230184 | MS.gene21531:intron | 35.0% | |
| GCAAATGATTGAAGAACTTG+TGG | + | chr5.3:6229380-6229399 | MS.gene21531:CDS | 35.0% | |
| GCATTAGATGACAGGTATTT+AGG | + | chr5.3:6229753-6229772 | MS.gene21531:intron | 35.0% | |
| GCTGTTTAAATTGTTGAGAC+TGG | + | chr5.3:6228765-6228784 | MS.gene21531:intron | 35.0% | |
| GCTTCAATGATCAGAAGAAA+AGG | - | chr5.3:6227945-6227964 | None:intergenic | 35.0% | |
| GGAGCTAAGAATATTGAAGT+GGG | + | chr5.3:6226768-6226787 | MS.gene21531:CDS | 35.0% | |
| GGTGATTAACTGTGGTATTT+GGG | + | chr5.3:6228937-6228956 | MS.gene21531:intron | 35.0% | |
| TAGTAAAAGATACATGGGCA+AGG | + | chr5.3:6229830-6229849 | MS.gene21531:intron | 35.0% | |
| TCAGAAAAAACTCACGAAAG+AGG | - | chr5.3:6229121-6229140 | None:intergenic | 35.0% | |
| TCCATGTATTAATACCGAAG+AGG | - | chr5.3:6230751-6230770 | None:intergenic | 35.0% | |
| TCCTCATTCCAAATGGAAAA+TGG | - | chr5.3:6228115-6228134 | None:intergenic | 35.0% | |
| TCCTCTTCGGTATTAATACA+TGG | + | chr5.3:6230747-6230766 | MS.gene21531:intron | 35.0% | |
| TGAAGCAGAAGATGTTGTTA+GGG | + | chr5.3:6227187-6227206 | MS.gene21531:intron | 35.0% | |
| TGGAGCTAAGAATATTGAAG+TGG | + | chr5.3:6226767-6226786 | MS.gene21531:CDS | 35.0% | |
| TGGTGATTAACTGTGGTATT+TGG | + | chr5.3:6228936-6228955 | MS.gene21531:intron | 35.0% | |
| TTCTCTACGTTAAACCAAAC+GGG | + | chr5.3:6230166-6230185 | MS.gene21531:intron | 35.0% | |
| TTGAAGCAGAAGATGTTGTT+AGG | + | chr5.3:6227186-6227205 | MS.gene21531:intron | 35.0% | |
| TTTAAATGATGCTCCCACAT+AGG | - | chr5.3:6230659-6230678 | None:intergenic | 35.0% | |
| ! | AAACTTGAAGCTAGTTCTTC+AGG | + | chr5.3:6229459-6229478 | MS.gene21531:CDS | 35.0% |
| ! | AATGTTCGCGTATTGTTTTC+AGG | - | chr5.3:6228616-6228635 | None:intergenic | 35.0% |
| ! | AGGGCATGTTTAGTTCAAAA+TGG | + | chr5.3:6230579-6230598 | MS.gene21531:intron | 35.0% |
| ! | ATGGGTTACTTACCAATTAC+AGG | + | chr5.3:6229674-6229693 | MS.gene21531:intron | 35.0% |
| ! | ATTTAAGATACATTGCAGGC+TGG | + | chr5.3:6229170-6229189 | MS.gene21531:intron | 35.0% |
| ! | CTGTGTGACAATTTTAAACG+AGG | + | chr5.3:6228881-6228900 | MS.gene21531:intron | 35.0% |
| ! | GAATAGATATGTTGGGGTTT+TGG | + | chr5.3:6228344-6228363 | MS.gene21531:intron | 35.0% |
| ! | GACAAGGGAAGAGATTTTAA+TGG | - | chr5.3:6230081-6230100 | None:intergenic | 35.0% |
| ! | TCAACCAATGAACATTGGTT+TGG | + | chr5.3:6227743-6227762 | MS.gene21531:CDS | 35.0% |
| ! | TTCAGAATACCTTGAGTTGT+TGG | - | chr5.3:6231087-6231106 | None:intergenic | 35.0% |
| ! | TTGAAAATTTTCCAGGAGGT+AGG | + | chr5.3:6227020-6227039 | MS.gene21531:intron | 35.0% |
| !! | AAATATTGGTTGGTTCGACA+AGG | - | chr5.3:6230097-6230116 | None:intergenic | 35.0% |
| !! | AACTCAAGGTATTCTGAAGT+TGG | + | chr5.3:6231089-6231108 | MS.gene21531:intron | 35.0% |
| !! | AATATTGGTTGGTTCGACAA+GGG | - | chr5.3:6230096-6230115 | None:intergenic | 35.0% |
| !! | ACCATTTTCCATTTGGAATG+AGG | + | chr5.3:6228111-6228130 | MS.gene21531:intron | 35.0% |
| !! | ATTCTCTCTTTTTGAAGACC+GGG | - | chr5.3:6231166-6231185 | None:intergenic | 35.0% |
| !! | CAGTTCTGATACATTTTCAC+GGG | + | chr5.3:6230478-6230497 | MS.gene21531:intron | 35.0% |
| !! | GGTATTCTGAAGTTGGAATA+TGG | + | chr5.3:6231096-6231115 | MS.gene21531:intron | 35.0% |
| !! | GTCTACTAGCCTAAATTTTG+TGG | + | chr5.3:6230222-6230241 | MS.gene21531:intron | 35.0% |
| !! | TACAAGGATATCGACTGTTT+TGG | + | chr5.3:6230294-6230313 | MS.gene21531:intron | 35.0% |
| !!! | ATACCGAAGAGGACATTTTT+TGG | - | chr5.3:6230740-6230759 | None:intergenic | 35.0% |
| !!! | ATTTTTTAGGGCTATAAGGG+AGG | + | chr5.3:6228134-6228153 | MS.gene21531:intron | 35.0% |
| !!! | GAGGATTTTTTAGGGCTATA+AGG | + | chr5.3:6228130-6228149 | MS.gene21531:intron | 35.0% |
| !!! | GTTTTGGCGATAATGGAATT+TGG | + | chr5.3:6228360-6228379 | MS.gene21531:intron | 35.0% |
| !!! | TACCGAAGAGGACATTTTTT+GGG | - | chr5.3:6230739-6230758 | None:intergenic | 35.0% |
| AAAAACTCACGAAAGAGGGA+AGG | - | chr5.3:6229116-6229135 | None:intergenic | 40.0% | |
| ACCCCAAAAAATGTCCTCTT+CGG | + | chr5.3:6230734-6230753 | MS.gene21531:intron | 40.0% | |
| CAGTTATCTCAAGGTCTAGT+AGG | + | chr5.3:6227717-6227736 | MS.gene21531:CDS | 40.0% | |
| CATAATCCACCCATATGAAG+TGG | - | chr5.3:6227329-6227348 | None:intergenic | 40.0% | |
| CTGCAAAATCCACTGTTGAA+GGG | + | chr5.3:6227846-6227865 | MS.gene21531:CDS | 40.0% | |
| CTTGCACGTTATCGCTTAAA+GGG | + | chr5.3:6229585-6229604 | MS.gene21531:intron | 40.0% | |
| GAGAAGGTAGGCTAAAATTC+AGG | + | chr5.3:6228185-6228204 | MS.gene21531:intron | 40.0% | |
| GTAGAAAGGATGGATCATGT+TGG | + | chr5.3:6228440-6228459 | MS.gene21531:intron | 40.0% | |
| TCAGCTGATCAGTTATCTCA+AGG | + | chr5.3:6227708-6227727 | MS.gene21531:CDS | 40.0% | |
| TCCCAGTTTACCGTTTAATC+CGG | + | chr5.3:6227611-6227630 | MS.gene21531:CDS | 40.0% | |
| TCTGCAAAATCCACTGTTGA+AGG | + | chr5.3:6227845-6227864 | MS.gene21531:CDS | 40.0% | |
| TCTGCAGTATCCAGAGATTT+AGG | - | chr5.3:6227231-6227250 | None:intergenic | 40.0% | |
| TCTTTACCACTTCATATGGG+TGG | + | chr5.3:6227320-6227339 | MS.gene21531:intron | 40.0% | |
| TGAATTTGATTCAACACCCC+AGG | - | chr5.3:6227454-6227473 | None:intergenic | 40.0% | |
| TGGAGGAAAATGAGAAGCTT+CGG | + | chr5.3:6229400-6229419 | MS.gene21531:CDS | 40.0% | |
| TGGTAAGTAACCCATTAGCA+GGG | - | chr5.3:6229669-6229688 | None:intergenic | 40.0% | |
| TGTTGGATGGCAACACAATT+AGG | - | chr5.3:6231070-6231089 | None:intergenic | 40.0% | |
| TGTTTGCAGATCTTTACACC+CGG | + | chr5.3:6231145-6231164 | MS.gene21531:intron | 40.0% | |
| TTCCAAGTCTATCAGTGTTG+AGG | - | chr5.3:6229247-6229266 | None:intergenic | 40.0% | |
| TTGCACGTTATCGCTTAAAG+GGG | + | chr5.3:6229586-6229605 | MS.gene21531:intron | 40.0% | |
| TTGGAGAGGAGTAAAATGGA+GGG | + | chr5.3:6229863-6229882 | MS.gene21531:intron | 40.0% | |
| TTGGTAAGTAACCCATTAGC+AGG | - | chr5.3:6229670-6229689 | None:intergenic | 40.0% | |
| TTGGTTGGAGAGGAGTAAAA+TGG | + | chr5.3:6229859-6229878 | MS.gene21531:intron | 40.0% | |
| TTTAATATAGGGGAAGGGAG+AGG | - | chr5.3:6230137-6230156 | None:intergenic | 40.0% | |
| ! | AGAACTAGCTTCAAGTTTGC+TGG | - | chr5.3:6229457-6229476 | None:intergenic | 40.0% |
| ! | CGTTTGGTTTAACGTAGAGA+AGG | - | chr5.3:6230167-6230186 | None:intergenic | 40.0% |
| ! | GAATACCTTGAGTTGTTGGA+TGG | - | chr5.3:6231083-6231102 | None:intergenic | 40.0% |
| ! | TCTGATACATTTTCACGGGT+TGG | + | chr5.3:6230482-6230501 | MS.gene21531:intron | 40.0% |
| ! | TGCTGAGACCATTTTCCATT+TGG | + | chr5.3:6228104-6228123 | MS.gene21531:intron | 40.0% |
| !! | AGTTGTCTGGTTCGATGTTT+TGG | + | chr5.3:6229938-6229957 | MS.gene21531:intron | 40.0% |
| !! | ATGCATTTTCTGGTGTTAGC+AGG | + | chr5.3:6226636-6226655 | MS.gene21531:CDS | 40.0% |
| !! | GAAGAGCACCCACAAAATTT+AGG | - | chr5.3:6230234-6230253 | None:intergenic | 40.0% |
| !!! | ACCGAAGAGGACATTTTTTG+GGG | - | chr5.3:6230738-6230757 | None:intergenic | 40.0% |
| !!! | CTTGGTTTTTGGCCAAAACA+GGG | + | chr5.3:6228534-6228553 | MS.gene21531:intron | 40.0% |
| !!! | TTGGTTTTTGGCCAAAACAG+GGG | + | chr5.3:6228535-6228554 | MS.gene21531:intron | 40.0% |
| AAAGGATGGATCATGTTGGC+TGG | + | chr5.3:6228444-6228463 | MS.gene21531:intron | 45.0% | |
| AAGGGAGATCTCACGGTTTA+GGG | - | chr5.3:6229615-6229634 | None:intergenic | 45.0% | |
| AATCCACTGTTGAAGGGAGA+AGG | + | chr5.3:6227852-6227871 | MS.gene21531:CDS | 45.0% | |
| ACCCGGATTAAACGGTAAAC+TGG | - | chr5.3:6227616-6227635 | None:intergenic | 45.0% | |
| ATATGGCAGTCGAACTGAGA+AGG | + | chr5.3:6227809-6227828 | MS.gene21531:CDS | 45.0% | |
| CCCAGTTTACCGTTTAATCC+GGG | + | chr5.3:6227612-6227631 | MS.gene21531:CDS | 45.0% | |
| CCCGGATTAAACGGTAAACT+GGG | - | chr5.3:6227615-6227634 | None:intergenic | 45.0% | |
| CCTCTAAATCCTCCACTTTC+CGG | - | chr5.3:6230023-6230042 | None:intergenic | 45.0% | |
| CGGAAAGTGGAGGATTTAGA+GGG | + | chr5.3:6230021-6230040 | MS.gene21531:intron | 45.0% | |
| CTCTAAATCCTCCACTTTCC+GGG | - | chr5.3:6230022-6230041 | None:intergenic | 45.0% | |
| CTTAGTCAAGGGCAGAAAAC+TGG | + | chr5.3:6230686-6230705 | MS.gene21531:intron | 45.0% | |
| GCTTGCACGTTATCGCTTAA+AGG | + | chr5.3:6229584-6229603 | MS.gene21531:intron | 45.0% | |
| GGAAAGTGGAGGATTTAGAG+GGG | + | chr5.3:6230022-6230041 | MS.gene21531:intron | 45.0% | |
| GGCCAAAAACCAAGCTCATT+GGG | - | chr5.3:6228528-6228547 | None:intergenic | 45.0% | |
| GGGTCTCAACCAATGAACAT+TGG | + | chr5.3:6227738-6227757 | MS.gene21531:CDS | 45.0% | |
| GGTAAGTAACCCATTAGCAG+GGG | - | chr5.3:6229668-6229687 | None:intergenic | 45.0% | |
| GTCCTCAACACTGATAGACT+TGG | + | chr5.3:6229242-6229261 | MS.gene21531:intron | 45.0% | |
| GTTAAACCAAACGGGTCTTG+AGG | + | chr5.3:6230174-6230193 | MS.gene21531:intron | 45.0% | |
| GTTGGAGAGGAGTAAAATGG+AGG | + | chr5.3:6229862-6229881 | MS.gene21531:intron | 45.0% | |
| TAACAACAGACGATGCCTAC+AGG | - | chr5.3:6228859-6228878 | None:intergenic | 45.0% | |
| TAAGGGAGATCTCACGGTTT+AGG | - | chr5.3:6229616-6229635 | None:intergenic | 45.0% | |
| TACAAGTTGCCCCTGCTAAT+GGG | + | chr5.3:6229656-6229675 | MS.gene21531:intron | 45.0% | |
| TAGCTGAGAGCAACCTATGT+GGG | + | chr5.3:6230643-6230662 | MS.gene21531:intron | 45.0% | |
| TAGTGTGGAGATGAGAAGGT+AGG | + | chr5.3:6228173-6228192 | MS.gene21531:intron | 45.0% | |
| TCAAATGGCACAAAGCCCTT+TGG | - | chr5.3:6228222-6228241 | None:intergenic | 45.0% | |
| TCGACTGCCATATGTAGAGT+CGG | - | chr5.3:6227802-6227821 | None:intergenic | 45.0% | |
| TCTAAATCCTCCACTTTCCG+GGG | - | chr5.3:6230021-6230040 | None:intergenic | 45.0% | |
| TCTTGAGGCTTAAGGTCCAA+GGG | + | chr5.3:6230189-6230208 | MS.gene21531:intron | 45.0% | |
| TGGAGAGGAGTAAAATGGAG+GGG | + | chr5.3:6229864-6229883 | MS.gene21531:intron | 45.0% | |
| TGGCCAAAAACCAAGCTCAT+TGG | - | chr5.3:6228529-6228548 | None:intergenic | 45.0% | |
| TGTTGCCATCCAACAACTCA+AGG | + | chr5.3:6231075-6231094 | MS.gene21531:intron | 45.0% | |
| TTAGCTGAGAGCAACCTATG+TGG | + | chr5.3:6230642-6230661 | MS.gene21531:intron | 45.0% | |
| TTCCACAAAAACCTACCTCC+TGG | - | chr5.3:6227034-6227053 | None:intergenic | 45.0% | |
| ! | AAGGATGGATCATGTTGGCT+GGG | + | chr5.3:6228445-6228464 | MS.gene21531:intron | 45.0% |
| ! | ACTTCAGCCGACTCTACATA+TGG | + | chr5.3:6227792-6227811 | MS.gene21531:CDS | 45.0% |
| ! | GATGCAACATTCCCCTGTTT+TGG | - | chr5.3:6228549-6228568 | None:intergenic | 45.0% |
| ! | GGTGCAACTGATGCATTTTC+TGG | + | chr5.3:6226626-6226645 | MS.gene21531:CDS | 45.0% |
| ! | GTTGGATGTGGAGTTGGTTT+CGG | + | chr5.3:6226792-6226811 | MS.gene21531:CDS | 45.0% |
| ! | TGGGGTTTTCTTTAACACCC+AGG | - | chr5.3:6228500-6228519 | None:intergenic | 45.0% |
| ! | TTCCAGGAGGTAGGTTTTTG+TGG | + | chr5.3:6227029-6227048 | MS.gene21531:intron | 45.0% |
| !! | ATGAGAGCTTACTGATTCGC+TGG | - | chr5.3:6227886-6227905 | None:intergenic | 45.0% |
| !! | ATTGAAGTGGGTGTTGGATG+TGG | + | chr5.3:6226780-6226799 | MS.gene21531:CDS | 45.0% |
| !! | CTAGCTTCAAGTTTGCTGGA+TGG | - | chr5.3:6229453-6229472 | None:intergenic | 45.0% |
| !! | CTCCCAATGAGCTTGGTTTT+TGG | + | chr5.3:6228523-6228542 | MS.gene21531:intron | 45.0% |
| !! | GTCGGCTGAAGTGTCTTTTA+TGG | - | chr5.3:6227784-6227803 | None:intergenic | 45.0% |
| !! | GTCTGGTTCGATGTTTTGGA+GGG | + | chr5.3:6229942-6229961 | MS.gene21531:intron | 45.0% |
| !! | GTGCCATTTGACCTGTATCA+CGG | + | chr5.3:6228231-6228250 | MS.gene21531:intron | 45.0% |
| !! | TACTGGTATGGTGGGTAGAA+AGG | + | chr5.3:6228426-6228445 | MS.gene21531:intron | 45.0% |
| !! | TGAGAGCTTACTGATTCGCT+GGG | - | chr5.3:6227885-6227904 | None:intergenic | 45.0% |
| !! | TGTCTGGTTCGATGTTTTGG+AGG | + | chr5.3:6229941-6229960 | MS.gene21531:intron | 45.0% |
| !! | TGTTGGGGTTTTGGCGATAA+TGG | + | chr5.3:6228353-6228372 | MS.gene21531:intron | 45.0% |
| !!! | ATGTTTTGGAGGGAAGAGCA+GGG | + | chr5.3:6229952-6229971 | MS.gene21531:intron | 45.0% |
| !!! | GCTTGGTTTTTGGCCAAAAC+AGG | + | chr5.3:6228533-6228552 | MS.gene21531:intron | 45.0% |
| AACTCACGAAAGAGGGAAGG+TGG | - | chr5.3:6229113-6229132 | None:intergenic | 50.0% | |
| AAGGGTCTGTTTGGTTGGAG+AGG | + | chr5.3:6229849-6229868 | MS.gene21531:intron | 50.0% | |
| AATGGCACAAAGCCCTTTGG+AGG | - | chr5.3:6228219-6228238 | None:intergenic | 50.0% | |
| ACCAAGCTCATTGGGAGAGA+TGG | - | chr5.3:6228520-6228539 | None:intergenic | 50.0% | |
| ACTCACGAAAGAGGGAAGGT+GGG | - | chr5.3:6229112-6229131 | None:intergenic | 50.0% | |
| AGAGGAGTAAAATGGAGGGG+AGG | + | chr5.3:6229867-6229886 | MS.gene21531:intron | 50.0% | |
| AGGAGTAAAATGGAGGGGAG+GGG | + | chr5.3:6229869-6229888 | MS.gene21531:intron | 50.0% | |
| AGGGAGATCTCACGGTTTAG+GGG | - | chr5.3:6229614-6229633 | None:intergenic | 50.0% | |
| CAAACGGGTCTTGAGGCTTA+AGG | + | chr5.3:6230181-6230200 | MS.gene21531:intron | 50.0% | |
| CAAGCTCATTGGGAGAGATG+GGG | - | chr5.3:6228518-6228537 | None:intergenic | 50.0% | |
| CACCACAATAGCAGCCATTG+CGG | - | chr5.3:6228402-6228421 | None:intergenic | 50.0% | |
| CAGGCAAAGTAGCCTCCAAA+GGG | + | chr5.3:6228204-6228223 | MS.gene21531:intron | 50.0% | |
| CATTAGCAGGGGCAACTTGT+AGG | - | chr5.3:6229657-6229676 | None:intergenic | 50.0% | |
| CCAAGCTCATTGGGAGAGAT+GGG | - | chr5.3:6228519-6228538 | None:intergenic | 50.0% | |
| CCAAGTTCCAACTCGTAGTG+TGG | + | chr5.3:6228158-6228177 | MS.gene21531:intron | 50.0% | |
| CCGGAAAGTGGAGGATTTAG+AGG | + | chr5.3:6230020-6230039 | MS.gene21531:intron | 50.0% | |
| CTACAAGTTGCCCCTGCTAA+TGG | + | chr5.3:6229655-6229674 | MS.gene21531:intron | 50.0% | |
| CTCATCTCCACACTACGAGT+TGG | - | chr5.3:6228168-6228187 | None:intergenic | 50.0% | |
| CTCGTAGTGTGGAGATGAGA+AGG | + | chr5.3:6228169-6228188 | MS.gene21531:intron | 50.0% | |
| CTGAAGAGCCAACCAACAGA+AGG | - | chr5.3:6230619-6230638 | None:intergenic | 50.0% | |
| CTTAAGCCTCAAGACCCGTT+TGG | - | chr5.3:6230183-6230202 | None:intergenic | 50.0% | |
| CTTGAGGCTTAAGGTCCAAG+GGG | + | chr5.3:6230190-6230209 | MS.gene21531:intron | 50.0% | |
| GAGCCGTGATACAGGTCAAA+TGG | - | chr5.3:6228237-6228256 | None:intergenic | 50.0% | |
| GAGGAGTAAAATGGAGGGGA+GGG | + | chr5.3:6229868-6229887 | MS.gene21531:intron | 50.0% | |
| GCTTCGGCAGATACTAGTGA+AGG | + | chr5.3:6229416-6229435 | MS.gene21531:CDS | 50.0% | |
| GGCAATGCACCCGGATTAAA+CGG | - | chr5.3:6227624-6227643 | None:intergenic | 50.0% | |
| GTAGACTCAGCAAATCCCCT+TGG | - | chr5.3:6230208-6230227 | None:intergenic | 50.0% | |
| GTCTTGAGGCTTAAGGTCCA+AGG | + | chr5.3:6230188-6230207 | MS.gene21531:intron | 50.0% | |
| GTGGCACTTTGTAAGGATGC+TGG | - | chr5.3:6227645-6227664 | None:intergenic | 50.0% | |
| TACATGGGCAAGGGTCTGTT+TGG | + | chr5.3:6229840-6229859 | MS.gene21531:intron | 50.0% | |
| TCAGGCAAAGTAGCCTCCAA+AGG | + | chr5.3:6228203-6228222 | MS.gene21531:intron | 50.0% | |
| TGCACATGTCCTCTTCCTGT+AGG | + | chr5.3:6228841-6228860 | MS.gene21531:intron | 50.0% | |
| TTTCCTAGGAGCCGTGATAC+AGG | - | chr5.3:6228245-6228264 | None:intergenic | 50.0% | |
| ! | CCACACTACGAGTTGGAACT+TGG | - | chr5.3:6228161-6228180 | None:intergenic | 50.0% |
| ! | CTTCTGTTGGTTGGCTCTTC+AGG | + | chr5.3:6230617-6230636 | MS.gene21531:intron | 50.0% |
| ! | GCATCCTTACAAAGTGCCAC+AGG | + | chr5.3:6227645-6227664 | MS.gene21531:CDS | 50.0% |
| ! | GTTGGTTTCGGTCATGGTGT+TGG | + | chr5.3:6226804-6226823 | MS.gene21531:CDS | 50.0% |
| ! | TGTGGAGTTGGTTTCGGTCA+TGG | + | chr5.3:6226798-6226817 | MS.gene21531:CDS | 50.0% |
| ! | TTCGGTCATGGTGTTGGAGT+TGG | + | chr5.3:6226810-6226829 | MS.gene21531:CDS | 50.0% |
| !! | ACAGGACTTGCTGTGAAACC+TGG | + | chr5.3:6227433-6227452 | MS.gene21531:intron | 50.0% |
| !! | AGGACTTGCTGTGAAACCTG+GGG | + | chr5.3:6227435-6227454 | MS.gene21531:intron | 50.0% |
| !! | CAGGACTTGCTGTGAAACCT+GGG | + | chr5.3:6227434-6227453 | MS.gene21531:intron | 50.0% |
| !! | GGTATGGTGGGTAGAAAGGA+TGG | + | chr5.3:6228430-6228449 | MS.gene21531:intron | 50.0% |
| !! | TGCTATTGTGGTGGTGCTAC+TGG | + | chr5.3:6228409-6228428 | MS.gene21531:intron | 50.0% |
| !! | TTGTGGTGGTGCTACTGGTA+TGG | + | chr5.3:6228414-6228433 | MS.gene21531:intron | 50.0% |
| !!! | GATGTTTTGGAGGGAAGAGC+AGG | + | chr5.3:6229951-6229970 | MS.gene21531:intron | 50.0% |
| !!! | TGTTTTGGAGGGAAGAGCAG+GGG | + | chr5.3:6229953-6229972 | MS.gene21531:intron | 50.0% |
| AAGGATGCTGGCAATGCACC+CGG | - | chr5.3:6227633-6227652 | None:intergenic | 55.0% | |
| ACAGCAATCGCAAGCCGCAA+TGG | + | chr5.3:6228385-6228404 | MS.gene21531:intron | 55.0% | |
| AGCCGCAATGGCTGCTATTG+TGG | + | chr5.3:6228397-6228416 | MS.gene21531:intron | 55.0% | |
| AGTAAAATGGAGGGGAGGGG+AGG | + | chr5.3:6229872-6229891 | MS.gene21531:intron | 55.0% | |
| ATTTAGGCATGCCGCGGTTG+TGG | - | chr5.3:6227215-6227234 | None:intergenic | 55.0% | |
| CAGACGATGCCTACAGGAAG+AGG | - | chr5.3:6228853-6228872 | None:intergenic | 55.0% | |
| CCACTGTTGAAGGGAGAAGG+AGG | + | chr5.3:6227855-6227874 | MS.gene21531:CDS | 55.0% | |
| CCAGAGATTTAGGCATGCCG+CGG | - | chr5.3:6227221-6227240 | None:intergenic | 55.0% | |
| CCCATCTCTCCCAATGAGCT+TGG | + | chr5.3:6228516-6228535 | MS.gene21531:intron | 55.0% | |
| CCTCCTTCTCCCTTCAACAG+TGG | - | chr5.3:6227858-6227877 | None:intergenic | 55.0% | |
| CGCAATGGCTGCTATTGTGG+TGG | + | chr5.3:6228400-6228419 | MS.gene21531:intron | 55.0% | |
| CTCACGAAAGAGGGAAGGTG+GGG | - | chr5.3:6229111-6229130 | None:intergenic | 55.0% | |
| CTGTTGAAGGGAGAAGGAGG+AGG | + | chr5.3:6227858-6227877 | MS.gene21531:CDS | 55.0% | |
| GTAAAATGGAGGGGAGGGGA+GGG | + | chr5.3:6229873-6229892 | MS.gene21531:intron | 55.0% | |
| TAAAATGGAGGGGAGGGGAG+GGG | + | chr5.3:6229874-6229893 | MS.gene21531:intron | 55.0% | |
| TATAGGGGAAGGGAGAGGAG+AGG | - | chr5.3:6230132-6230151 | None:intergenic | 55.0% | |
| TGACCTGTATCACGGCTCCT+AGG | + | chr5.3:6228239-6228258 | MS.gene21531:intron | 55.0% | |
| TGCGCCTGTGGCACTTTGTA+AGG | - | chr5.3:6227652-6227671 | None:intergenic | 55.0% | |
| TGGGCAAGGGTCTGTTTGGT+TGG | + | chr5.3:6229844-6229863 | MS.gene21531:intron | 55.0% | |
| ! | AACTTGCTCTCCCCGGAAAG+TGG | + | chr5.3:6230008-6230027 | MS.gene21531:intron | 55.0% |
| ! | TTGTTAGGGTGCCACAACCG+CGG | + | chr5.3:6227201-6227220 | MS.gene21531:intron | 55.0% |
| !! | CGTGAGTAACTTGCTCTCCC+CGG | + | chr5.3:6230001-6230020 | MS.gene21531:intron | 55.0% |
| !! | GGTGGTGCTACTGGTATGGT+GGG | + | chr5.3:6228418-6228437 | MS.gene21531:intron | 55.0% |
| !! | GTGGGTGTTGGATGTGGAGT+TGG | + | chr5.3:6226786-6226805 | MS.gene21531:CDS | 55.0% |
| !! | TGGTGGTGCTACTGGTATGG+TGG | + | chr5.3:6228417-6228436 | MS.gene21531:intron | 55.0% |
| CCGCGGCATGCCTAAATCTC+TGG | + | chr5.3:6227218-6227237 | MS.gene21531:intron | 60.0% | |
| TCCAGAACTGACTGCGCCTG+TGG | - | chr5.3:6227664-6227683 | None:intergenic | 60.0% | |
| TGGAGGGAAGAGCAGGGGAT+GGG | + | chr5.3:6229958-6229977 | MS.gene21531:intron | 60.0% | |
| TTGCTCTCCCCGGAAAGTGG+AGG | + | chr5.3:6230011-6230030 | MS.gene21531:intron | 60.0% | |
| TTGGAGGGAAGAGCAGGGGA+TGG | + | chr5.3:6229957-6229976 | MS.gene21531:intron | 60.0% | |
| GCCACAGGCGCAGTCAGTTC+TGG | + | chr5.3:6227660-6227679 | MS.gene21531:CDS | 65.0% | |
| AATGGAGGGGAGGGGAGGGG+AGG | + | chr5.3:6229877-6229896 | MS.gene21531:intron | 70.0% | |
| ATGGAGGGGAGGGGAGGGGA+GGG | + | chr5.3:6229878-6229897 | MS.gene21531:intron | 70.0% | |
| GGGAGGGGAGGGGAGAAGAG+AGG | + | chr5.3:6229899-6229918 | MS.gene21531:intron | 70.0% | |
| TGGAGGGGAGGGGAGGGGAG+GGG | + | chr5.3:6229879-6229898 | MS.gene21531:intron | 75.0% | |
| ! | AGGGGAGGGGAGGGGAGGGG+AGG | + | chr5.3:6229882-6229901 | MS.gene21531:intron | 80.0% |
| ! | GGGAGGGGAGGGGAGGGGAG+GGG | + | chr5.3:6229884-6229903 | MS.gene21531:intron | 80.0% |
| ! | GGGGAGGGGAGGGGAGGGGA+GGG | + | chr5.3:6229883-6229902 | MS.gene21531:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 6226611 | 6231212 | 6226611 | ID=MS.gene21531 |
| chr5.3 | mRNA | 6226611 | 6231212 | 6226611 | ID=MS.gene21531.t1;Parent=MS.gene21531 |
| chr5.3 | exon | 6226611 | 6226673 | 6226611 | ID=MS.gene21531.t1.exon1;Parent=MS.gene21531.t1 |
| chr5.3 | CDS | 6226611 | 6226673 | 6226611 | ID=cds.MS.gene21531.t1;Parent=MS.gene21531.t1 |
| chr5.3 | exon | 6226756 | 6226831 | 6226756 | ID=MS.gene21531.t1.exon2;Parent=MS.gene21531.t1 |
| chr5.3 | CDS | 6226756 | 6226831 | 6226756 | ID=cds.MS.gene21531.t1;Parent=MS.gene21531.t1 |
| chr5.3 | exon | 6227437 | 6227486 | 6227437 | ID=MS.gene21531.t1.exon3;Parent=MS.gene21531.t1 |
| chr5.3 | CDS | 6227437 | 6227486 | 6227437 | ID=cds.MS.gene21531.t1;Parent=MS.gene21531.t1 |
| chr5.3 | exon | 6227573 | 6227893 | 6227573 | ID=MS.gene21531.t1.exon4;Parent=MS.gene21531.t1 |
| chr5.3 | CDS | 6227573 | 6227893 | 6227573 | ID=cds.MS.gene21531.t1;Parent=MS.gene21531.t1 |
| chr5.3 | exon | 6229188 | 6229226 | 6229188 | ID=MS.gene21531.t1.exon5;Parent=MS.gene21531.t1 |
| chr5.3 | CDS | 6229188 | 6229226 | 6229188 | ID=cds.MS.gene21531.t1;Parent=MS.gene21531.t1 |
| chr5.3 | exon | 6229366 | 6229480 | 6229366 | ID=MS.gene21531.t1.exon6;Parent=MS.gene21531.t1 |
| chr5.3 | CDS | 6229366 | 6229480 | 6229366 | ID=cds.MS.gene21531.t1;Parent=MS.gene21531.t1 |
| chr5.3 | exon | 6231154 | 6231212 | 6231154 | ID=MS.gene21531.t1.exon7;Parent=MS.gene21531.t1 |
| chr5.3 | CDS | 6231154 | 6231212 | 6231154 | ID=cds.MS.gene21531.t1;Parent=MS.gene21531.t1 |
| Gene Sequence |
| Protein sequence |
