Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21687.t1 | XP_003610951.1 | 98.4 | 371 | 6 | 0 | 1 | 371 | 1 | 371 | 1.10E-210 | 742.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21687.t1 | Q9T0G0 | 66.8 | 349 | 108 | 4 | 1 | 347 | 2 | 344 | 6.1e-133 | 475.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21687.t1 | G7K984 | 98.4 | 371 | 6 | 0 | 1 | 371 | 1 | 371 | 8.0e-211 | 742.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21687 | MS.gene000539 | PPI |
| MS.gene063266 | MS.gene21687 | PPI |
| MS.gene21687 | MS.gene030460 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21687.t1 | MTR_5g008850 | 98.383 | 371 | 6 | 0 | 1 | 371 | 1 | 371 | 0.0 | 762 |
| MS.gene21687.t1 | MTR_8g096620 | 43.887 | 319 | 162 | 6 | 1 | 311 | 1 | 310 | 1.04e-79 | 248 |
| MS.gene21687.t1 | MTR_8g096580 | 40.323 | 310 | 170 | 4 | 1 | 309 | 1 | 296 | 1.55e-73 | 231 |
| MS.gene21687.t1 | MTR_8g096610 | 31.776 | 214 | 111 | 9 | 103 | 309 | 31 | 216 | 9.30e-16 | 76.3 |
| MS.gene21687.t1 | MTR_1g082760 | 25.210 | 238 | 161 | 6 | 38 | 267 | 33 | 261 | 1.61e-12 | 67.8 |
| MS.gene21687.t1 | MTR_7g113650 | 23.529 | 255 | 178 | 6 | 38 | 284 | 33 | 278 | 5.26e-12 | 66.2 |
| MS.gene21687.t1 | MTR_7g080410 | 27.962 | 211 | 128 | 8 | 43 | 241 | 36 | 234 | 4.89e-11 | 63.5 |
| MS.gene21687.t1 | MTR_7g080410 | 27.962 | 211 | 128 | 8 | 43 | 241 | 36 | 234 | 5.50e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21687.t1 | AT4G10020 | 64.054 | 370 | 112 | 5 | 1 | 355 | 2 | 365 | 4.66e-174 | 490 |
| MS.gene21687.t1 | AT5G50600 | 42.985 | 335 | 173 | 3 | 1 | 332 | 1 | 320 | 1.04e-84 | 261 |
| MS.gene21687.t1 | AT5G50700 | 42.985 | 335 | 173 | 3 | 1 | 332 | 1 | 320 | 1.04e-84 | 261 |
| MS.gene21687.t1 | AT5G50690 | 39.803 | 304 | 171 | 2 | 1 | 304 | 1 | 292 | 4.76e-69 | 219 |
| MS.gene21687.t1 | AT5G50590 | 39.803 | 304 | 171 | 2 | 1 | 304 | 1 | 292 | 4.76e-69 | 219 |
| MS.gene21687.t1 | AT3G47350 | 37.582 | 306 | 176 | 3 | 1 | 306 | 1 | 291 | 9.79e-69 | 219 |
| MS.gene21687.t1 | AT5G50770 | 38.730 | 315 | 185 | 2 | 1 | 312 | 1 | 310 | 3.11e-68 | 218 |
| MS.gene21687.t1 | AT3G47360 | 36.013 | 311 | 185 | 2 | 1 | 311 | 1 | 297 | 2.09e-62 | 202 |
| MS.gene21687.t1 | AT3G47350 | 40.000 | 255 | 147 | 2 | 1 | 255 | 1 | 249 | 8.14e-62 | 201 |
| MS.gene21687.t1 | AT5G50690 | 42.276 | 246 | 137 | 1 | 1 | 246 | 1 | 241 | 2.03e-59 | 192 |
| MS.gene21687.t1 | AT5G50590 | 42.276 | 246 | 137 | 1 | 1 | 246 | 1 | 241 | 2.03e-59 | 192 |
| MS.gene21687.t1 | AT3G47350 | 32.353 | 306 | 148 | 5 | 1 | 306 | 1 | 247 | 8.44e-46 | 158 |
| MS.gene21687.t1 | AT3G05260 | 26.471 | 238 | 157 | 8 | 38 | 267 | 30 | 257 | 9.40e-14 | 71.6 |
| MS.gene21687.t1 | AT3G03330 | 25.758 | 198 | 136 | 6 | 43 | 234 | 39 | 231 | 1.44e-11 | 65.5 |
Find 97 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAGAGTTTCTTCTTATTT+AGG | 0.129280 | 5.2:-2643020 | MS.gene21687:CDS |
| ACCACGACCAAAGACATTTA+TGG | 0.185510 | 5.2:+2644712 | None:intergenic |
| GGAGAGTTTCTTCTTATTTA+GGG | 0.241156 | 5.2:-2643019 | MS.gene21687:CDS |
| TGGCTCTTTAACTATAATTA+TGG | 0.280186 | 5.2:-2645048 | MS.gene21687:CDS |
| CCTTGTGAATACAGTAAGTT+TGG | 0.283041 | 5.2:-2644312 | MS.gene21687:CDS |
| TTGTCCCTTGTGGGGAAATA+AGG | 0.286930 | 5.2:+2643042 | None:intergenic |
| ATGTTCTCAATTGGGCATTT+AGG | 0.291988 | 5.2:-2643067 | MS.gene21687:CDS |
| AATGAAACCATAAATGTCTT+TGG | 0.311625 | 5.2:-2644719 | MS.gene21687:CDS |
| CGAAGAGAGCATAGGCTAAT+AGG | 0.322565 | 5.2:-2644833 | MS.gene21687:CDS |
| TTGCTCCAAATGTTCTCAAT+TGG | 0.334210 | 5.2:-2643076 | MS.gene21687:CDS |
| CTATAATTATGGTGAAGATA+TGG | 0.336256 | 5.2:-2645037 | MS.gene21687:CDS |
| AGCAAGACATGTTATGATTA+TGG | 0.339422 | 5.2:-2644783 | MS.gene21687:CDS |
| TGATGTATTCTTGCTGTATA+GGG | 0.342416 | 5.2:-2643102 | MS.gene21687:CDS |
| ATGATGTATTCTTGCTGTAT+AGG | 0.353634 | 5.2:-2643103 | MS.gene21687:CDS |
| GCCAATGTGATCAAACTTGC+TGG | 0.376064 | 5.2:+2645111 | None:intergenic |
| TGACACTGTCACTGGTGGTA+TGG | 0.385040 | 5.2:-2642982 | MS.gene21687:CDS |
| AATGCCCAATTGAGAACATT+TGG | 0.386127 | 5.2:+2643071 | None:intergenic |
| ATGGTTCCACTTACATTCTC+TGG | 0.400159 | 5.2:-2642915 | MS.gene21687:CDS |
| GTTGCATCTGGTGACTCAAT+TGG | 0.403327 | 5.2:+2642892 | None:intergenic |
| TGCTCCAAATGTTCTCAATT+GGG | 0.404590 | 5.2:-2643075 | MS.gene21687:CDS |
| TAATAACACGACCGTTGCTT+TGG | 0.410977 | 5.2:+2644054 | None:intergenic |
| TTGCATATGAGTATGCAATA+AGG | 0.412653 | 5.2:-2644880 | MS.gene21687:CDS |
| TTGCCAAGGATGAGTTTGTT+TGG | 0.413187 | 5.2:-2644002 | MS.gene21687:CDS |
| GACACTGTCACTGGTGGTAT+GGG | 0.429885 | 5.2:-2642981 | MS.gene21687:CDS |
| CATATGTGAAGTTTCCTAGT+TGG | 0.432557 | 5.2:-2643127 | MS.gene21687:CDS |
| GGAGAAGTTCCCTCCAACAT+AGG | 0.445854 | 5.2:+2642954 | None:intergenic |
| AAACTCTCCTTGTCCCTTGT+GGG | 0.451143 | 5.2:+2643033 | None:intergenic |
| GAAATTCTCACCAAGAGAAC+AGG | 0.452904 | 5.2:+2644245 | None:intergenic |
| GCTGAGAATGCAAGGCGAAT+CGG | 0.483692 | 5.2:-2644806 | MS.gene21687:CDS |
| GTTTCTTCTTATTTAGGGAC+AGG | 0.486130 | 5.2:-2643014 | MS.gene21687:CDS |
| CTTGTGAATACAGTAAGTTT+GGG | 0.492775 | 5.2:-2644311 | MS.gene21687:CDS |
| TTTGCAAGGTTGATTGTAAG+TGG | 0.495388 | 5.2:-2643167 | MS.gene21687:CDS |
| AGTAAAGTTGTCATCATCAC+TGG | 0.495753 | 5.2:-2645012 | MS.gene21687:CDS |
| ACTGGAGCATCTTCTGCCAT+TGG | 0.496925 | 5.2:-2644994 | MS.gene21687:CDS |
| ACCATAAATGTCTTTGGTCG+TGG | 0.504643 | 5.2:-2644713 | MS.gene21687:intron |
| GAGAGCAAATTTAATGTTGG+TGG | 0.506436 | 5.2:-2644858 | MS.gene21687:CDS |
| CCGTTGCTTTGGTGAAGGTA+AGG | 0.507356 | 5.2:+2644065 | None:intergenic |
| AAGGAGAGCAAATTTAATGT+TGG | 0.513576 | 5.2:-2644861 | MS.gene21687:CDS |
| TGATCACATTGGCTTTCTCA+TGG | 0.514950 | 5.2:-2645101 | MS.gene21687:CDS |
| ATAGCAACACATGGTTGGAT+TGG | 0.526999 | 5.2:-2643772 | MS.gene21687:CDS |
| ACACCAAACAAACTCATCCT+TGG | 0.527782 | 5.2:+2643999 | None:intergenic |
| TCAATGCATCAGTTGAGAGT+TGG | 0.528271 | 5.2:-2644031 | MS.gene21687:CDS |
| AGATCCCTTGACACTGTCAC+TGG | 0.528905 | 5.2:-2642990 | MS.gene21687:CDS |
| TGGTATGGGGAGACCTATGT+TGG | 0.530458 | 5.2:-2642967 | MS.gene21687:CDS |
| TTTGAATTGAAAGACGAGGT+TGG | 0.530727 | 5.2:-2643802 | MS.gene21687:CDS |
| GAAACTCTCCTTGTCCCTTG+TGG | 0.532546 | 5.2:+2643032 | None:intergenic |
| CAAGTTCATGCTAGAGGAGG+GGG | 0.534060 | 5.2:-2643731 | MS.gene21687:CDS |
| GAGTCACCAGATGCAACAAA+AGG | 0.544526 | 5.2:-2642886 | MS.gene21687:CDS |
| TTGGCAACTTGCCTCTCCAA+TGG | 0.547635 | 5.2:+2644978 | None:intergenic |
| TGCAAGGTTGATTGTAAGTG+GGG | 0.547799 | 5.2:-2643165 | MS.gene21687:CDS |
| TTGCAAGGTTGATTGTAAGT+GGG | 0.549501 | 5.2:-2643166 | MS.gene21687:CDS |
| GTTTCCTCAATGCTTGTGAG+TGG | 0.554913 | 5.2:-2645068 | MS.gene21687:CDS |
| TCCAGCAAGTTTGATCACAT+TGG | 0.555899 | 5.2:-2645112 | MS.gene21687:CDS |
| ATTGTAAGTGGGGCATGTAG+AGG | 0.556954 | 5.2:-2643155 | MS.gene21687:CDS |
| AGAGTTGGCTACCTTTGCCA+AGG | 0.557855 | 5.2:-2644016 | MS.gene21687:CDS |
| TTATTTCCCCACAAGGGACA+AGG | 0.559249 | 5.2:-2643040 | MS.gene21687:CDS |
| GGCAAGTTCATGCTAGAGGA+GGG | 0.566062 | 5.2:-2643733 | MS.gene21687:CDS |
| TCACCAGATGCAACAAAAGG+TGG | 0.571602 | 5.2:-2642883 | MS.gene21687:CDS |
| TAGGAATTGCTGAGAATGCA+AGG | 0.574860 | 5.2:-2644814 | MS.gene21687:CDS |
| TAACGATAGCAACACATGGT+TGG | 0.576646 | 5.2:-2643777 | MS.gene21687:CDS |
| AATTGGCCAGAGAATGTAAG+TGG | 0.578070 | 5.2:+2642909 | None:intergenic |
| AACTCTCCTTGTCCCTTGTG+GGG | 0.578247 | 5.2:+2643034 | None:intergenic |
| CACGACCGTTGCTTTGGTGA+AGG | 0.579262 | 5.2:+2644060 | None:intergenic |
| GGGGAATGTTTATCCAACGT+TGG | 0.581313 | 5.2:-2644096 | MS.gene21687:CDS |
| TACCACCAGTGACAGTGTCA+AGG | 0.582504 | 5.2:+2642985 | None:intergenic |
| GCATTGAGGAAACAAAGTGC+TGG | 0.583396 | 5.2:+2645078 | None:intergenic |
| GCAAGTTCATGCTAGAGGAG+GGG | 0.593135 | 5.2:-2643732 | MS.gene21687:CDS |
| GAATGTTTATCCAACGTTGG+TGG | 0.596275 | 5.2:-2644093 | MS.gene21687:CDS |
| AGGCAAGTTCATGCTAGAGG+AGG | 0.598499 | 5.2:-2643734 | MS.gene21687:CDS |
| GGCTCCTTATTTCCCCACAA+GGG | 0.606717 | 5.2:-2643046 | MS.gene21687:CDS |
| AGAGCCACTCACAAGCATTG+AGG | 0.607148 | 5.2:+2645064 | None:intergenic |
| TCCTAGTCATCACACAGGCA+TGG | 0.607181 | 5.2:-2642934 | MS.gene21687:CDS |
| AGGCTCCTTATTTCCCCACA+AGG | 0.610610 | 5.2:-2643047 | MS.gene21687:CDS |
| ACCACCAGTGACAGTGTCAA+GGG | 0.610662 | 5.2:+2642986 | None:intergenic |
| CATGTAATGTAAGGCTGCAA+AGG | 0.613357 | 5.2:-2643857 | MS.gene21687:intron |
| TAAGGAAGAGCCACCAACGT+TGG | 0.613929 | 5.2:+2644083 | None:intergenic |
| AGCATCTTCTGCCATTGGAG+AGG | 0.616348 | 5.2:-2644989 | MS.gene21687:CDS |
| AACAAACTCATCCTTGGCAA+AGG | 0.620180 | 5.2:+2644005 | None:intergenic |
| TATGGCAGCAGATGTTGTCA+AGG | 0.628152 | 5.2:-2644765 | MS.gene21687:CDS |
| AAGAATACATCATACCAACT+AGG | 0.632930 | 5.2:+2643113 | None:intergenic |
| AAGCAGTAGAAGAATTTGCA+AGG | 0.634067 | 5.2:-2643181 | MS.gene21687:CDS |
| CCTTACCTTCACCAAAGCAA+CGG | 0.636544 | 5.2:-2644065 | MS.gene21687:CDS |
| TATGGGGAGACCTATGTTGG+AGG | 0.640356 | 5.2:-2642964 | MS.gene21687:CDS |
| TCCCTTGACACTGTCACTGG+TGG | 0.643537 | 5.2:-2642987 | MS.gene21687:CDS |
| TGGTGGCACGAAGAGAGCAT+AGG | 0.647406 | 5.2:-2644841 | MS.gene21687:CDS |
| GCGATTTGAATTGAAAGACG+AGG | 0.653464 | 5.2:-2643806 | MS.gene21687:CDS |
| GAGAGGCAAGTTCATGCTAG+AGG | 0.654649 | 5.2:-2643737 | MS.gene21687:CDS |
| ATGTGATCAAACTTGCTGGA+GGG | 0.657173 | 5.2:+2645115 | None:intergenic |
| ACCATGCCTGTGTGATGACT+AGG | 0.657821 | 5.2:+2642933 | None:intergenic |
| ACACTGTCACTGGTGGTATG+GGG | 0.658826 | 5.2:-2642980 | MS.gene21687:CDS |
| CCAAACTTACTGTATTCACA+AGG | 0.664927 | 5.2:+2644312 | None:intergenic |
| ATGGGGAGACCTATGTTGGA+GGG | 0.664995 | 5.2:-2642963 | MS.gene21687:CDS |
| TGAATTTAGATGCATGTGAG+TGG | 0.689132 | 5.2:-2643206 | MS.gene21687:intron |
| AATGTGATCAAACTTGCTGG+AGG | 0.689941 | 5.2:+2645114 | None:intergenic |
| ATTGGAAGTGAAATGACGAG+AGG | 0.705490 | 5.2:-2643754 | MS.gene21687:CDS |
| GGAGTAACGATAGCAACACA+TGG | 0.734647 | 5.2:-2643781 | MS.gene21687:CDS |
| ACTTCTCCTAGTCATCACAC+AGG | 0.770032 | 5.2:-2642939 | MS.gene21687:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAATAGCTTATATAT+AGG | - | chr5.2:2643468-2643487 | MS.gene21687:intron | 10.0% |
| !!! | TTTTTAGGATATTAATTTTT+GGG | - | chr5.2:2643911-2643930 | MS.gene21687:intron | 10.0% |
| !! | ATATACCATATATGTAATTA+TGG | - | chr5.2:2644638-2644657 | MS.gene21687:intron | 15.0% |
| !! | TAACAATTAACATTTAATGT+TGG | - | chr5.2:2644515-2644534 | MS.gene21687:intron | 15.0% |
| !! | TTTATCCATAATTACATATA+TGG | + | chr5.2:2644646-2644665 | None:intergenic | 15.0% |
| !!! | AAACTTTAATACAAACATTT+TGG | + | chr5.2:2643072-2643091 | None:intergenic | 15.0% |
| !!! | CTTTTTAGGATATTAATTTT+TGG | - | chr5.2:2643910-2643929 | MS.gene21687:intron | 15.0% |
| !!! | TTTTAGGATATTAATTTTTG+GGG | - | chr5.2:2643912-2643931 | MS.gene21687:intron | 15.0% |
| !! | ATTGCACATTAATTAACTAA+TGG | - | chr5.2:2643582-2643601 | MS.gene21687:intron | 20.0% |
| !! | CATATTAATATGAGATAATG+TGG | - | chr5.2:2643886-2643905 | MS.gene21687:intron | 20.0% |
| !! | CTTATTAATTTAAAGAGTCA+TGG | + | chr5.2:2643665-2643684 | None:intergenic | 20.0% |
| !!! | TTTAGGATATTAATTTTTGG+GGG | - | chr5.2:2643913-2643932 | MS.gene21687:intron | 20.0% |
| ! | AATGAAACCATAAATGTCTT+TGG | - | chr5.2:2643309-2643328 | MS.gene21687:intron | 25.0% |
| ! | AATGTGTAAAAAAAGTCCAA+CGG | + | chr5.2:2643442-2643461 | None:intergenic | 25.0% |
| ! | ACACTATTGTTATAGTCAAT+TGG | - | chr5.2:2644383-2644402 | MS.gene21687:intron | 25.0% |
| ! | CAAATTAGTATGTACTACTT+CGG | + | chr5.2:2644783-2644802 | None:intergenic | 25.0% |
| ! | CAATATGAATGATATGTGAA+AGG | + | chr5.2:2643566-2643585 | None:intergenic | 25.0% |
| ! | CTATAATTATGGTGAAGATA+TGG | - | chr5.2:2642991-2643010 | MS.gene21687:CDS | 25.0% |
| ! | TGGCTCTTTAACTATAATTA+TGG | - | chr5.2:2642980-2642999 | MS.gene21687:CDS | 25.0% |
| !! | ATGCTGTTTATTCAAACATT+AGG | - | chr5.2:2643510-2643529 | MS.gene21687:intron | 25.0% |
| !! | TAAACACTTGTGATAATGTT+CGG | - | chr5.2:2643380-2643399 | MS.gene21687:intron | 25.0% |
| !!! | GTTTTTTCATGTGTATGATT+TGG | - | chr5.2:2643112-2643131 | MS.gene21687:CDS | 25.0% |
| !!! | TTTAATTTTGCTGTTCTGTT+TGG | - | chr5.2:2644132-2644151 | MS.gene21687:intron | 25.0% |
| AAGAATACATCATACCAACT+AGG | + | chr5.2:2644918-2644937 | None:intergenic | 30.0% | |
| AAGGAGAGCAAATTTAATGT+TGG | - | chr5.2:2643167-2643186 | MS.gene21687:CDS | 30.0% | |
| ACATTAGGCTTATTGCATTA+AGG | - | chr5.2:2643525-2643544 | MS.gene21687:intron | 30.0% | |
| AGCAAGACATGTTATGATTA+TGG | - | chr5.2:2643245-2643264 | MS.gene21687:intron | 30.0% | |
| CTTGTGAATACAGTAAGTTT+GGG | - | chr5.2:2643717-2643736 | MS.gene21687:CDS | 30.0% | |
| TATGAATGATATGTGAAAGG+TGG | + | chr5.2:2643563-2643582 | None:intergenic | 30.0% | |
| TGGATCCTTCAAAATTTGAA+AGG | - | chr5.2:2644535-2644554 | MS.gene21687:intron | 30.0% | |
| TTGCATATGAGTATGCAATA+AGG | - | chr5.2:2643148-2643167 | MS.gene21687:CDS | 30.0% | |
| ! | AGCAAAAAAGTACATGTATG+TGG | - | chr5.2:2644707-2644726 | MS.gene21687:intron | 30.0% |
| ! | AGGAGAGTTTCTTCTTATTT+AGG | - | chr5.2:2645008-2645027 | MS.gene21687:CDS | 30.0% |
| ! | ATGATGTATTCTTGCTGTAT+AGG | - | chr5.2:2644925-2644944 | MS.gene21687:intron | 30.0% |
| ! | GGAGAGTTTCTTCTTATTTA+GGG | - | chr5.2:2645009-2645028 | MS.gene21687:CDS | 30.0% |
| ! | TAGCACCTTTCAAATTTTGA+AGG | + | chr5.2:2644543-2644562 | None:intergenic | 30.0% |
| ! | TGAGATAATGTGGTCTTTTT+AGG | - | chr5.2:2643896-2643915 | MS.gene21687:intron | 30.0% |
| ! | TGATGTATTCTTGCTGTATA+GGG | - | chr5.2:2644926-2644945 | MS.gene21687:intron | 30.0% |
| AAGCAGTAGAAGAATTTGCA+AGG | - | chr5.2:2644847-2644866 | MS.gene21687:CDS | 35.0% | |
| AATGCCCAATTGAGAACATT+TGG | + | chr5.2:2644960-2644979 | None:intergenic | 35.0% | |
| AGTAAAGTTGTCATCATCAC+TGG | - | chr5.2:2643016-2643035 | MS.gene21687:CDS | 35.0% | |
| ATGTTCTCAATTGGGCATTT+AGG | - | chr5.2:2644961-2644980 | MS.gene21687:intron | 35.0% | |
| CATATGTGAAGTTTCCTAGT+TGG | - | chr5.2:2644901-2644920 | MS.gene21687:intron | 35.0% | |
| CCAAACTTACTGTATTCACA+AGG | + | chr5.2:2643719-2643738 | None:intergenic | 35.0% | |
| CCTTGTGAATACAGTAAGTT+TGG | - | chr5.2:2643716-2643735 | MS.gene21687:CDS | 35.0% | |
| GAGAGCAAATTTAATGTTGG+TGG | - | chr5.2:2643170-2643189 | MS.gene21687:CDS | 35.0% | |
| TATAGTCAATTGGACACGAT+TGG | - | chr5.2:2644393-2644412 | MS.gene21687:intron | 35.0% | |
| TGAAAATGCAACTTGTAGCA+AGG | + | chr5.2:2644358-2644377 | None:intergenic | 35.0% | |
| TGAATTTAGATGCATGTGAG+TGG | - | chr5.2:2644822-2644841 | MS.gene21687:CDS | 35.0% | |
| TGCTCCAAATGTTCTCAATT+GGG | - | chr5.2:2644953-2644972 | MS.gene21687:intron | 35.0% | |
| TGTCATGTGCATGTAATGTA+AGG | - | chr5.2:2644162-2644181 | MS.gene21687:intron | 35.0% | |
| TTGCTCCAAATGTTCTCAAT+TGG | - | chr5.2:2644952-2644971 | MS.gene21687:intron | 35.0% | |
| TTTGAATTGAAAGACGAGGT+TGG | - | chr5.2:2644226-2644245 | MS.gene21687:intron | 35.0% | |
| ! | GTTTCTTCTTATTTAGGGAC+AGG | - | chr5.2:2645014-2645033 | MS.gene21687:CDS | 35.0% |
| ! | TTGCAAGGTTGATTGTAAGT+GGG | - | chr5.2:2644862-2644881 | MS.gene21687:CDS | 35.0% |
| ! | TTTGCAAGGTTGATTGTAAG+TGG | - | chr5.2:2644861-2644880 | MS.gene21687:CDS | 35.0% |
| !!! | GTGGTCTATATTTTTAGACC+TGG | - | chr5.2:2644726-2644745 | MS.gene21687:CDS | 35.0% |
| AAAGTCCAACGGCTTCATAT+AGG | + | chr5.2:2643431-2643450 | None:intergenic | 40.0% | |
| AACAAACTCATCCTTGGCAA+AGG | + | chr5.2:2644026-2644045 | None:intergenic | 40.0% | |
| AATTGGCCAGAGAATGTAAG+TGG | + | chr5.2:2645122-2645141 | None:intergenic | 40.0% | |
| ACACCAAACAAACTCATCCT+TGG | + | chr5.2:2644032-2644051 | None:intergenic | 40.0% | |
| ACCACGACCAAAGACATTTA+TGG | + | chr5.2:2643319-2643338 | None:intergenic | 40.0% | |
| ACCATAAATGTCTTTGGTCG+TGG | - | chr5.2:2643315-2643334 | MS.gene21687:intron | 40.0% | |
| ATAGCAACACATGGTTGGAT+TGG | - | chr5.2:2644256-2644275 | MS.gene21687:CDS | 40.0% | |
| ATGGTTCCACTTACATTCTC+TGG | - | chr5.2:2645113-2645132 | MS.gene21687:CDS | 40.0% | |
| ATTGGAAGTGAAATGACGAG+AGG | - | chr5.2:2644274-2644293 | MS.gene21687:CDS | 40.0% | |
| CAAGAGAACAGGAAAAACTG+AGG | + | chr5.2:2643775-2643794 | None:intergenic | 40.0% | |
| CAATTGGACACGATTGGTAT+TGG | - | chr5.2:2644399-2644418 | MS.gene21687:intron | 40.0% | |
| CATGTAATGTAAGGCTGCAA+AGG | - | chr5.2:2644171-2644190 | MS.gene21687:intron | 40.0% | |
| GAAATTCTCACCAAGAGAAC+AGG | + | chr5.2:2643786-2643805 | None:intergenic | 40.0% | |
| GAATGTTTATCCAACGTTGG+TGG | - | chr5.2:2643935-2643954 | MS.gene21687:intron | 40.0% | |
| GCGATTTGAATTGAAAGACG+AGG | - | chr5.2:2644222-2644241 | MS.gene21687:intron | 40.0% | |
| TAACGATAGCAACACATGGT+TGG | - | chr5.2:2644251-2644270 | MS.gene21687:intron | 40.0% | |
| TAATAACACGACCGTTGCTT+TGG | + | chr5.2:2643977-2643996 | None:intergenic | 40.0% | |
| TAGGAATTGCTGAGAATGCA+AGG | - | chr5.2:2643214-2643233 | MS.gene21687:intron | 40.0% | |
| TATAGCCTATATGAAGCCGT+TGG | - | chr5.2:2643423-2643442 | MS.gene21687:intron | 40.0% | |
| TCAATGCATCAGTTGAGAGT+TGG | - | chr5.2:2643997-2644016 | MS.gene21687:intron | 40.0% | |
| TCCAGCAAGTTTGATCACAT+TGG | - | chr5.2:2642916-2642935 | MS.gene21687:CDS | 40.0% | |
| TTGGTCGTGGTATGTTTCTT+TGG | - | chr5.2:2643328-2643347 | MS.gene21687:intron | 40.0% | |
| ! | AATCCACCTTTTGTTGCATC+TGG | + | chr5.2:2645151-2645170 | None:intergenic | 40.0% |
| ! | CAAAAAAGTACATGCACACC+AGG | + | chr5.2:2644747-2644766 | None:intergenic | 40.0% |
| ! | CTCAGTTTTTCCTGTTCTCT+TGG | - | chr5.2:2643773-2643792 | MS.gene21687:CDS | 40.0% |
| ! | TGCAAGGTTGATTGTAAGTG+GGG | - | chr5.2:2644863-2644882 | MS.gene21687:CDS | 40.0% |
| ! | TTGCCAAGGATGAGTTTGTT+TGG | - | chr5.2:2644026-2644045 | MS.gene21687:CDS | 40.0% |
| !! | AATGTGATCAAACTTGCTGG+AGG | + | chr5.2:2642917-2642936 | None:intergenic | 40.0% |
| !! | ATGTGATCAAACTTGCTGGA+GGG | + | chr5.2:2642916-2642935 | None:intergenic | 40.0% |
| !! | TGATCACATTGGCTTTCTCA+TGG | - | chr5.2:2642927-2642946 | MS.gene21687:CDS | 40.0% |
| AAACTCTCCTTGTCCCTTGT+GGG | + | chr5.2:2644998-2645017 | None:intergenic | 45.0% | |
| ACTTCTCCTAGTCATCACAC+AGG | - | chr5.2:2645089-2645108 | MS.gene21687:CDS | 45.0% | |
| ATTGTAAGTGGGGCATGTAG+AGG | - | chr5.2:2644873-2644892 | MS.gene21687:CDS | 45.0% | |
| CCTTACCTTCACCAAAGCAA+CGG | - | chr5.2:2643963-2643982 | MS.gene21687:intron | 45.0% | |
| GAGTCACCAGATGCAACAAA+AGG | - | chr5.2:2645142-2645161 | MS.gene21687:CDS | 45.0% | |
| GCATTGAGGAAACAAAGTGC+TGG | + | chr5.2:2642953-2642972 | None:intergenic | 45.0% | |
| GCCAATGTGATCAAACTTGC+TGG | + | chr5.2:2642920-2642939 | None:intergenic | 45.0% | |
| GGAGTAACGATAGCAACACA+TGG | - | chr5.2:2644247-2644266 | MS.gene21687:intron | 45.0% | |
| GGGGAATGTTTATCCAACGT+TGG | - | chr5.2:2643932-2643951 | MS.gene21687:intron | 45.0% | |
| GTTGCATCTGGTGACTCAAT+TGG | + | chr5.2:2645139-2645158 | None:intergenic | 45.0% | |
| GTTTCCTCAATGCTTGTGAG+TGG | - | chr5.2:2642960-2642979 | MS.gene21687:CDS | 45.0% | |
| TATGGCAGCAGATGTTGTCA+AGG | - | chr5.2:2643263-2643282 | MS.gene21687:intron | 45.0% | |
| TCACCAGATGCAACAAAAGG+TGG | - | chr5.2:2645145-2645164 | MS.gene21687:CDS | 45.0% | |
| TTATTTCCCCACAAGGGACA+AGG | - | chr5.2:2644988-2645007 | MS.gene21687:CDS | 45.0% | |
| TTGTCCCTTGTGGGGAAATA+AGG | + | chr5.2:2644989-2645008 | None:intergenic | 45.0% | |
| ! | CGAAGAGAGCATAGGCTAAT+AGG | - | chr5.2:2643195-2643214 | MS.gene21687:CDS | 45.0% |
| !! | TTTAAATTAATAAGAAAATT+TGG | - | chr5.2:2643671-2643690 | MS.gene21687:intron | 5.0% |
| !!! | ATATTAATTTTAAATGAATT+AGG | + | chr5.2:2643844-2643863 | None:intergenic | 5.0% |
| !!! | TATTAATTTTAAATGAATTA+GGG | + | chr5.2:2643843-2643862 | None:intergenic | 5.0% |
| AACTCTCCTTGTCCCTTGTG+GGG | + | chr5.2:2644997-2645016 | None:intergenic | 50.0% | |
| ACACTGTCACTGGTGGTATG+GGG | - | chr5.2:2645048-2645067 | MS.gene21687:CDS | 50.0% | |
| ACCACCAGTGACAGTGTCAA+GGG | + | chr5.2:2645045-2645064 | None:intergenic | 50.0% | |
| ACCATGCCTGTGTGATGACT+AGG | + | chr5.2:2645098-2645117 | None:intergenic | 50.0% | |
| AGAGTTGGCTACCTTTGCCA+AGG | - | chr5.2:2644012-2644031 | MS.gene21687:CDS | 50.0% | |
| AGATCCCTTGACACTGTCAC+TGG | - | chr5.2:2645038-2645057 | MS.gene21687:CDS | 50.0% | |
| AGCATCTTCTGCCATTGGAG+AGG | - | chr5.2:2643039-2643058 | MS.gene21687:CDS | 50.0% | |
| AGGCAAGTTCATGCTAGAGG+AGG | - | chr5.2:2644294-2644313 | MS.gene21687:CDS | 50.0% | |
| ATGGGGAGACCTATGTTGGA+GGG | - | chr5.2:2645065-2645084 | MS.gene21687:CDS | 50.0% | |
| CAAGTTCATGCTAGAGGAGG+GGG | - | chr5.2:2644297-2644316 | MS.gene21687:CDS | 50.0% | |
| GAAACTCTCCTTGTCCCTTG+TGG | + | chr5.2:2644999-2645018 | None:intergenic | 50.0% | |
| GACACTGTCACTGGTGGTAT+GGG | - | chr5.2:2645047-2645066 | MS.gene21687:CDS | 50.0% | |
| GAGAGGCAAGTTCATGCTAG+AGG | - | chr5.2:2644291-2644310 | MS.gene21687:CDS | 50.0% | |
| GCAAGTTCATGCTAGAGGAG+GGG | - | chr5.2:2644296-2644315 | MS.gene21687:CDS | 50.0% | |
| GCTGAGAATGCAAGGCGAAT+CGG | - | chr5.2:2643222-2643241 | MS.gene21687:intron | 50.0% | |
| GGAGAAGTTCCCTCCAACAT+AGG | + | chr5.2:2645077-2645096 | None:intergenic | 50.0% | |
| GGCAAGTTCATGCTAGAGGA+GGG | - | chr5.2:2644295-2644314 | MS.gene21687:CDS | 50.0% | |
| TAAGGAAGAGCCACCAACGT+TGG | + | chr5.2:2643948-2643967 | None:intergenic | 50.0% | |
| TACCACCAGTGACAGTGTCA+AGG | + | chr5.2:2645046-2645065 | None:intergenic | 50.0% | |
| TATGGGGAGACCTATGTTGG+AGG | - | chr5.2:2645064-2645083 | MS.gene21687:CDS | 50.0% | |
| TCCTAGTCATCACACAGGCA+TGG | - | chr5.2:2645094-2645113 | MS.gene21687:CDS | 50.0% | |
| TGACACTGTCACTGGTGGTA+TGG | - | chr5.2:2645046-2645065 | MS.gene21687:CDS | 50.0% | |
| TGGTATGGGGAGACCTATGT+TGG | - | chr5.2:2645061-2645080 | MS.gene21687:CDS | 50.0% | |
| TTGGCAACTTGCCTCTCCAA+TGG | + | chr5.2:2643053-2643072 | None:intergenic | 50.0% | |
| ! | ACTGGAGCATCTTCTGCCAT+TGG | - | chr5.2:2643034-2643053 | MS.gene21687:CDS | 50.0% |
| ! | AGAGCCACTCACAAGCATTG+AGG | + | chr5.2:2642967-2642986 | None:intergenic | 50.0% |
| ! | AGGCTCCTTATTTCCCCACA+AGG | - | chr5.2:2644981-2645000 | MS.gene21687:CDS | 50.0% |
| ! | CCGTTGCTTTGGTGAAGGTA+AGG | + | chr5.2:2643966-2643985 | None:intergenic | 50.0% |
| ! | GGCTCCTTATTTCCCCACAA+GGG | - | chr5.2:2644982-2645001 | MS.gene21687:CDS | 50.0% |
| TCCCTTGACACTGTCACTGG+TGG | - | chr5.2:2645041-2645060 | MS.gene21687:CDS | 55.0% | |
| ! | CACGACCGTTGCTTTGGTGA+AGG | + | chr5.2:2643971-2643990 | None:intergenic | 55.0% |
| ! | TGGTGGCACGAAGAGAGCAT+AGG | - | chr5.2:2643187-2643206 | MS.gene21687:CDS | 55.0% |
| AGGAGGGGGCTGACATGCAG+TGG | - | chr5.2:2644311-2644330 | MS.gene21687:CDS | 65.0% | |
| GGGGGCTGACATGCAGTGGA+AGG | - | chr5.2:2644315-2644334 | MS.gene21687:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 2642878 | 2645172 | 2642878 | ID=MS.gene21687 |
| chr5.2 | mRNA | 2642878 | 2645172 | 2642878 | ID=MS.gene21687.t1;Parent=MS.gene21687 |
| chr5.2 | exon | 2644975 | 2645172 | 2644975 | ID=MS.gene21687.t1.exon1;Parent=MS.gene21687.t1 |
| chr5.2 | CDS | 2644975 | 2645172 | 2644975 | ID=cds.MS.gene21687.t1;Parent=MS.gene21687.t1 |
| chr5.2 | exon | 2644714 | 2644906 | 2644714 | ID=MS.gene21687.t1.exon2;Parent=MS.gene21687.t1 |
| chr5.2 | CDS | 2644714 | 2644906 | 2644714 | ID=cds.MS.gene21687.t1;Parent=MS.gene21687.t1 |
| chr5.2 | exon | 2644256 | 2644341 | 2644256 | ID=MS.gene21687.t1.exon3;Parent=MS.gene21687.t1 |
| chr5.2 | CDS | 2644256 | 2644341 | 2644256 | ID=cds.MS.gene21687.t1;Parent=MS.gene21687.t1 |
| chr5.2 | exon | 2644001 | 2644132 | 2644001 | ID=MS.gene21687.t1.exon4;Parent=MS.gene21687.t1 |
| chr5.2 | CDS | 2644001 | 2644132 | 2644001 | ID=cds.MS.gene21687.t1;Parent=MS.gene21687.t1 |
| chr5.2 | exon | 2643702 | 2643866 | 2643702 | ID=MS.gene21687.t1.exon5;Parent=MS.gene21687.t1 |
| chr5.2 | CDS | 2643702 | 2643866 | 2643702 | ID=cds.MS.gene21687.t1;Parent=MS.gene21687.t1 |
| chr5.2 | exon | 2642878 | 2643219 | 2642878 | ID=MS.gene21687.t1.exon6;Parent=MS.gene21687.t1 |
| chr5.2 | CDS | 2642878 | 2643219 | 2642878 | ID=cds.MS.gene21687.t1;Parent=MS.gene21687.t1 |
| Gene Sequence |
| Protein sequence |
