AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21743

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21743.t1 MTR_5g007880 97.436 312 8 0 1 312 1 312 0.0 630
MS.gene21743.t1 MTR_5g007880 97.500 280 7 0 1 280 1 280 0.0 565
MS.gene21743.t1 MTR_5g014220 74.359 39 10 0 115 153 43 81 5.47e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21743.t1 AT2G43190 55.128 234 100 2 75 308 62 290 3.41e-86 261
MS.gene21743.t1 AT2G43190 55.128 234 100 2 75 308 62 290 3.41e-86 261
MS.gene21743.t1 AT2G43190 58.333 216 89 1 93 308 75 289 1.42e-85 259
MS.gene21743.t1 AT2G43190 58.333 216 89 1 93 308 75 289 1.42e-85 259
MS.gene21743.t1 AT2G43190 44.444 234 90 2 75 308 62 255 1.01e-58 189

Find 54 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGAAACTGCAGAAGCTTT+TGG 0.202603 5.2:-2118795 MS.gene21743:CDS
TGCCACCAGTTCCAGTAAAA+TGG 0.225932 5.2:+2118826 None:intergenic
GAAAATCTGCTCACAACTAA+TGG 0.271857 5.2:-2120745 MS.gene21743:CDS
TAAATTTGAATTACCTTTGT+TGG 0.343920 5.2:+2121620 None:intergenic
ACTTACTTATGGAACTCTTT+AGG 0.344380 5.2:+2120116 None:intergenic
AAGAAGTTCATGCAATATTT+CGG 0.347349 5.2:+2120337 None:intergenic
AAAATCTGCTCACAACTAAT+GGG 0.354040 5.2:-2120744 MS.gene21743:CDS
TTGTACTACAAGTTGATTGC+TGG 0.357928 5.2:-2117751 MS.gene21743:CDS
ACAGAAAGTTGGGCATATTC+TGG 0.385740 5.2:+2120778 None:intergenic
GAAACGTGCAATGGAGGCTT+TGG 0.387822 5.2:-2121829 MS.gene21743:CDS
TCGGATGATGGACGACATAA+AGG 0.400815 5.2:+2121648 None:intergenic
AAATTTGAATTACCTTTGTT+GGG 0.407924 5.2:+2121621 None:intergenic
CATTTACAGTCACAGAAAGT+TGG 0.409130 5.2:+2120767 None:intergenic
AAACTAGATTCAAGAAAGGT+TGG 0.424013 5.2:-2117707 MS.gene21743:CDS
ATTTACAGTCACAGAAAGTT+GGG 0.425288 5.2:+2120768 None:intergenic
CAGTACAGTACCTTGTGAAA+TGG 0.436121 5.2:+2120945 None:intergenic
TGCTGGAAAGCCACTCTGCT+TGG 0.452437 5.2:-2117734 MS.gene21743:CDS
TTGTTCCAGGAATAATCAAT+TGG 0.458394 5.2:-2119664 MS.gene21743:intron
AAGTTGTTGCTTAAATCCAC+TGG 0.460350 5.2:-2119798 MS.gene21743:CDS
GCCACCAGTTCCAGTAAAAT+GGG 0.464672 5.2:+2118827 None:intergenic
AATTGCAGTTGTTCCGAAGA+AGG 0.466042 5.2:-2117783 MS.gene21743:intron
TATCAATGGCTGCTGAATCA+AGG 0.478212 5.2:-2121851 None:intergenic
TTCTTCATCTTCTCAAACAA+GGG 0.478707 5.2:-2120216 MS.gene21743:CDS
ACAAATACAGAACCCTTCTT+CGG 0.485262 5.2:+2117770 None:intergenic
CAATTGGCTCAATGTCTCCT+AGG 0.493446 5.2:-2119648 MS.gene21743:CDS
ATTACCTTTGTTGGGTGTAT+CGG 0.513719 5.2:+2121629 None:intergenic
TCTTTCCACATGTCATGCAT+TGG 0.514242 5.2:+2119828 None:intergenic
TTGTTGGGTGTATCGGATGA+TGG 0.531290 5.2:+2121636 None:intergenic
ATTGCATGAACTTCTTCAGA+AGG 0.532906 5.2:-2120330 MS.gene21743:CDS
ATTGCAGTTGTTCCGAAGAA+GGG 0.549801 5.2:-2117782 MS.gene21743:intron
CTTGCACAAAATTATCAAGA+AGG 0.550602 5.2:+2120249 None:intergenic
TCATTAGAAGTAGAGGGTGG+TGG 0.559781 5.2:+2121681 None:intergenic
AGATAAACTAGATTCAAGAA+AGG 0.561327 5.2:-2117711 MS.gene21743:CDS
TTTCTTCATCTTCTCAAACA+AGG 0.563095 5.2:-2120217 MS.gene21743:CDS
TTTGGTCGTGCCATTTCACA+AGG 0.566627 5.2:-2120955 MS.gene21743:intron
CTCCTAGGTGCAGATCTACA+TGG 0.569680 5.2:-2119633 MS.gene21743:CDS
GGACGGATCATTAGAAGTAG+AGG 0.570525 5.2:+2121674 None:intergenic
ATCAAGGAAACGTGCAATGG+AGG 0.577785 5.2:-2121835 MS.gene21743:CDS
TAATCTGTAGAGAAAGAAGA+TGG 0.577837 5.2:-2120802 MS.gene21743:intron
TTGCATGAACTTCTTCAGAA+GGG 0.595042 5.2:-2120329 MS.gene21743:CDS
AGTTGTTGCTTAAATCCACT+GGG 0.610453 5.2:-2119797 MS.gene21743:intron
TCAAGCCAATGCATGACATG+TGG 0.623887 5.2:-2119833 MS.gene21743:CDS
GGACGACATAAAGGCAAGGA+CGG 0.625054 5.2:+2121657 None:intergenic
ACTGAAGATAATAAATTCCG+AGG 0.626423 5.2:-2118765 MS.gene21743:intron
GACGGATCATTAGAAGTAGA+GGG 0.632740 5.2:+2121675 None:intergenic
GCAGCACAAAAGTACATGCA+AGG 0.640542 5.2:-2120302 MS.gene21743:CDS
TCTGCTCACAACTAATGGGG+AGG 0.647144 5.2:-2120740 MS.gene21743:intron
TGAATCAAGGAAACGTGCAA+TGG 0.657298 5.2:-2121838 MS.gene21743:CDS
AAATCTGCTCACAACTAATG+GGG 0.672764 5.2:-2120743 MS.gene21743:CDS
TAGTTTATCTCCAAGCAGAG+TGG 0.678445 5.2:+2117724 None:intergenic
TGATGGACGACATAAAGGCA+AGG 0.683011 5.2:+2121653 None:intergenic
TCATCCGATACACCCAACAA+AGG 0.686196 5.2:-2121633 MS.gene21743:intron
CACCATGTAGATCTGCACCT+AGG 0.706017 5.2:+2119631 None:intergenic
GGATCATTAGAAGTAGAGGG+TGG 0.734876 5.2:+2121678 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATAATTAATGAATAATA+AGG - chr5.2:2120945-2120964 MS.gene21743:intron 10.0%
!!! TTTTTTATTTCATTTTCTTA+GGG - chr5.2:2118556-2118575 MS.gene21743:intron 10.0%
!! AAAAAGTTAATACATTTATG+TGG - chr5.2:2118244-2118263 MS.gene21743:intron 15.0%
!! AAAAGAAAAGAAAAACAAAA+GGG - chr5.2:2117768-2117787 MS.gene21743:CDS 15.0%
!! TAAAAGAAAAGAAAAACAAA+AGG - chr5.2:2117767-2117786 MS.gene21743:CDS 15.0%
!!! AATTAACAAATCAAAGTATT+TGG + chr5.2:2121747-2121766 None:intergenic 15.0%
!!! ATTGAATCACTTTTTATTTA+GGG - chr5.2:2121453-2121472 MS.gene21743:intron 15.0%
!!! ATTTCATTTTCTTAGTAAAA+GGG + chr5.2:2121537-2121556 None:intergenic 15.0%
!!! CTATTTTTGTTTTTTGTTTT+TGG - chr5.2:2119963-2119982 MS.gene21743:intron 15.0%
!!! CTTTTTTATTTCATTTTCTT+AGG - chr5.2:2118555-2118574 MS.gene21743:intron 15.0%
!!! TAATGATTTTCTTTTCTTTT+AGG + chr5.2:2117813-2117832 None:intergenic 15.0%
!!! TATTTCATTTTCTTAGTAAA+AGG + chr5.2:2121538-2121557 None:intergenic 15.0%
!!! TTTGCTTATGATTATTTTTA+AGG - chr5.2:2118284-2118303 MS.gene21743:intron 15.0%
!! AAAAAAAAAATCCAAGTGTA+AGG + chr5.2:2120398-2120417 None:intergenic 20.0%
!! AAATTTGAATTACCTTTGTT+GGG + chr5.2:2117928-2117947 None:intergenic 20.0%
!! AAGAATTAAGAAAGAGAAAA+TGG + chr5.2:2121513-2121532 None:intergenic 20.0%
!! AGAATTAAGAAAGAGAAAAT+GGG + chr5.2:2121512-2121531 None:intergenic 20.0%
!! AGTCATTCTTATAAACAATA+TGG - chr5.2:2121232-2121251 MS.gene21743:intron 20.0%
!! ATGAAACAACATAAAAAACA+TGG - chr5.2:2119394-2119413 MS.gene21743:intron 20.0%
!! ATTTGTAACTTCAATTTATG+TGG - chr5.2:2118700-2118719 MS.gene21743:intron 20.0%
!! TAAATTTGAATTACCTTTGT+TGG + chr5.2:2117929-2117948 None:intergenic 20.0%
!! TTTGTAACTTCAATTTATGT+GGG - chr5.2:2118701-2118720 MS.gene21743:intron 20.0%
!!! ATGTTTTTTATGTTGTTTCA+TGG + chr5.2:2119395-2119414 None:intergenic 20.0%
!!! ATTTGCTACATATAATTGTA+CGG - chr5.2:2121343-2121362 MS.gene21743:intron 20.0%
!!! GATTGAATCACTTTTTATTT+AGG - chr5.2:2121452-2121471 MS.gene21743:intron 20.0%
!!! TTCTATTTTTAAGTAGTGAA+AGG + chr5.2:2120811-2120830 None:intergenic 20.0%
!!! TTTCATTTTCTTAGTAAAAG+GGG + chr5.2:2121536-2121555 None:intergenic 20.0%
!!! TTTTGATCTAACTAAAACTT+TGG + chr5.2:2121488-2121507 None:intergenic 20.0%
! AAAACTTCAACTTAAGCAAA+CGG + chr5.2:2121665-2121684 None:intergenic 25.0%
! AAAGCTCAAGATAAATGAAA+TGG + chr5.2:2120024-2120043 None:intergenic 25.0%
! AAGAAGTTCATGCAATATTT+CGG + chr5.2:2119212-2119231 None:intergenic 25.0%
! AAGTCAAATTAGAACAATCA+GGG + chr5.2:2119150-2119169 None:intergenic 25.0%
! AAGTGATTCAATCGTAAATT+AGG + chr5.2:2121445-2121464 None:intergenic 25.0%
! AATATTTCATATGCATCGAA+AGG - chr5.2:2120124-2120143 MS.gene21743:CDS 25.0%
! ACAATTATATGTAGCAAATC+TGG + chr5.2:2121342-2121361 None:intergenic 25.0%
! ACATAAAAAACATGGATCAA+TGG - chr5.2:2119402-2119421 MS.gene21743:intron 25.0%
! ACTATGCTAAAGTTTCAAAA+CGG + chr5.2:2120982-2121001 None:intergenic 25.0%
! ACTTATTCAATATGACACTT+AGG - chr5.2:2117978-2117997 MS.gene21743:intron 25.0%
! AGACGAGTAAAAAAATCAAT+AGG + chr5.2:2121410-2121429 None:intergenic 25.0%
! AGATAAACTAGATTCAAGAA+AGG - chr5.2:2121835-2121854 MS.gene21743:CDS 25.0%
! AGGAAATGTAATATGTTATG+AGG + chr5.2:2119004-2119023 None:intergenic 25.0%
! ATGTGACACTTACAATATTA+TGG - chr5.2:2121592-2121611 MS.gene21743:intron 25.0%
! CAAAAAACAAAAATAGAGTG+TGG + chr5.2:2119959-2119978 None:intergenic 25.0%
! CATTAATACTTGAGAAATAC+AGG + chr5.2:2120863-2120882 None:intergenic 25.0%
! GCTTATATGTTTGAATGTAA+AGG - chr5.2:2121109-2121128 MS.gene21743:intron 25.0%
! GGAAATGTAATATGTTATGA+GGG + chr5.2:2119003-2119022 None:intergenic 25.0%
! TAAGTCAAATTAGAACAATC+AGG + chr5.2:2119151-2119170 None:intergenic 25.0%
! TTACAATATTATGGCTGAAT+TGG - chr5.2:2121601-2121620 MS.gene21743:intron 25.0%
! TTATAATCTTAGAGTGTGTT+TGG + chr5.2:2119124-2119143 None:intergenic 25.0%
!! AACTTATGTTGAATGCTTTT+AGG - chr5.2:2120434-2120453 MS.gene21743:intron 25.0%
!! AATTAATCTAAGAGTGTGTT+TGG - chr5.2:2118911-2118930 MS.gene21743:intron 25.0%
!! ATAAACCCAAATGCATTTTT+CGG - chr5.2:2118488-2118507 MS.gene21743:intron 25.0%
!! TTCATTTATCTTGAGCTTTT+TGG - chr5.2:2120025-2120044 MS.gene21743:intron 25.0%
!! TTCATTTTCTTAGGGAATTT+CGG - chr5.2:2118564-2118583 MS.gene21743:intron 25.0%
!! TTTTCATTTCGTCTTTCATT+GGG - chr5.2:2119550-2119569 MS.gene21743:intron 25.0%
!! TTTTTCATTTCGTCTTTCAT+TGG - chr5.2:2119549-2119568 MS.gene21743:intron 25.0%
!!! CTTATGATTATTTTTAAGGC+TGG - chr5.2:2118288-2118307 MS.gene21743:intron 25.0%
!!! GATTGAACATATTGACTTTT+TGG + chr5.2:2118865-2118884 None:intergenic 25.0%
!!! TGGCTTATTTTTTTAGCTTA+TGG - chr5.2:2118013-2118032 MS.gene21743:intron 25.0%
!!! TTCTTCATTTTGATTTCTGA+AGG - chr5.2:2118660-2118679 MS.gene21743:intron 25.0%
AAAATCTGCTCACAACTAAT+GGG - chr5.2:2118802-2118821 MS.gene21743:CDS 30.0%
AAACTAGATTCAAGAAAGGT+TGG - chr5.2:2121839-2121858 MS.gene21743:CDS 30.0%
ACTGAAGATAATAAATTCCG+AGG - chr5.2:2120781-2120800 MS.gene21743:CDS 30.0%
ACTTACTTATGGAACTCTTT+AGG + chr5.2:2119433-2119452 None:intergenic 30.0%
ATATGGCTGAGATTCTTATT+TGG - chr5.2:2121249-2121268 MS.gene21743:intron 30.0%
ATTCAAATGAGAAACATTCC+CGG + chr5.2:2120330-2120349 None:intergenic 30.0%
ATTTACAGTCACAGAAAGTT+GGG + chr5.2:2118781-2118800 None:intergenic 30.0%
CTTGCACAAAATTATCAAGA+AGG + chr5.2:2119300-2119319 None:intergenic 30.0%
GAAGGAATGTAATGTTATGA+GGG + chr5.2:2119086-2119105 None:intergenic 30.0%
TAAATACTTGCATGACTGTT+TGG + chr5.2:2118459-2118478 None:intergenic 30.0%
TAACTAGCAGACAACTATTT+AGG + chr5.2:2120648-2120667 None:intergenic 30.0%
TAATCTGTAGAGAAAGAAGA+TGG - chr5.2:2118744-2118763 MS.gene21743:intron 30.0%
TACTTGAGATATAACCTGAT+AGG + chr5.2:2121304-2121323 None:intergenic 30.0%
TGAAGGAATGTAATGTTATG+AGG + chr5.2:2119087-2119106 None:intergenic 30.0%
TGGATGTTAATTATTTCCCA+CGG - chr5.2:2120080-2120099 MS.gene21743:intron 30.0%
TTATATGTAGCAAATCTGGT+TGG + chr5.2:2121338-2121357 None:intergenic 30.0%
TTATTCCTGGAACAATAAAC+AGG + chr5.2:2119877-2119896 None:intergenic 30.0%
TTCTTCATCTTCTCAAACAA+GGG - chr5.2:2119330-2119349 MS.gene21743:intron 30.0%
TTGTTCCAGGAATAATCAAT+TGG - chr5.2:2119882-2119901 MS.gene21743:intron 30.0%
TTTCATTTCGTCTTTCATTG+GGG - chr5.2:2119551-2119570 MS.gene21743:intron 30.0%
TTTCTTCATCTTCTCAAACA+AGG - chr5.2:2119329-2119348 MS.gene21743:intron 30.0%
! ATGAACAGTGATTACTGATT+AGG + chr5.2:2119671-2119690 None:intergenic 30.0%
! GAGAAGATGTATTTTATGAC+AGG - chr5.2:2121155-2121174 MS.gene21743:intron 30.0%
! GAGCTTTTTGGATAATTACA+AGG - chr5.2:2120037-2120056 MS.gene21743:intron 30.0%
! TAAACCCAAATGCATTTTTC+GGG - chr5.2:2118489-2118508 MS.gene21743:intron 30.0%
! TACACTTTATGGAAGTATGT+TGG - chr5.2:2119468-2119487 MS.gene21743:intron 30.0%
! TACTTATATTTAAGGCCTGA+TGG + chr5.2:2118220-2118239 None:intergenic 30.0%
! TGTAAACTAACCCATTTTAC+TGG - chr5.2:2120709-2120728 MS.gene21743:intron 30.0%
! TTATGTTGAATGCTTTTAGG+TGG - chr5.2:2120437-2120456 MS.gene21743:intron 30.0%
! TTTCTAAGAACACCAAAAGT+AGG + chr5.2:2120192-2120211 None:intergenic 30.0%
!! AAGGACAGTTATTTTGTCAT+TGG - chr5.2:2120056-2120075 MS.gene21743:intron 30.0%
!! ACAGTTATTTTGTCATTGGT+TGG - chr5.2:2120060-2120079 MS.gene21743:intron 30.0%
!! CTTCTTGATAATTTTGTGCA+AGG - chr5.2:2119298-2119317 MS.gene21743:intron 30.0%
!! GAAGTATTTTACGCAATCAT+TGG - chr5.2:2120223-2120242 MS.gene21743:CDS 30.0%
!!! ATGATTATTTTTAAGGCTGG+AGG - chr5.2:2118291-2118310 MS.gene21743:intron 30.0%
!!! CTACATGGTGCTATTATTTT+AGG - chr5.2:2119928-2119947 MS.gene21743:intron 30.0%
!!! GTGTTCAGTTGCTTTTAAAA+TGG - chr5.2:2121062-2121081 MS.gene21743:intron 30.0%
!!! TGATTATTTTTAAGGCTGGA+GGG - chr5.2:2118292-2118311 MS.gene21743:intron 30.0%
!!! TTTTAGAGTTCAGACTTCAA+AGG + chr5.2:2118889-2118908 None:intergenic 30.0%
AAATACAGGAATAACAGCTC+TGG + chr5.2:2120849-2120868 None:intergenic 35.0%
AAATCTGCTCACAACTAATG+GGG - chr5.2:2118803-2118822 MS.gene21743:CDS 35.0%
AAGTAGTGAAAGGATTACCT+CGG + chr5.2:2120801-2120820 None:intergenic 35.0%
AATCTTAGAGTGTGTTTGGA+TGG + chr5.2:2119120-2119139 None:intergenic 35.0%
ACAAACCTGTTTATTGTTCC+AGG - chr5.2:2119869-2119888 MS.gene21743:intron 35.0%
ACAAATACAGAACCCTTCTT+CGG + chr5.2:2121779-2121798 None:intergenic 35.0%
AGAGACCTTGAACTTACTTA+TGG + chr5.2:2119444-2119463 None:intergenic 35.0%
ATCTTAGAGTGTGTTTGGAT+GGG + chr5.2:2119119-2119138 None:intergenic 35.0%
ATTACCTTTGTTGGGTGTAT+CGG + chr5.2:2117920-2117939 None:intergenic 35.0%
ATTCACAGGTTTCATTACAG+CGG + chr5.2:2120168-2120187 None:intergenic 35.0%
ATTGCATGAACTTCTTCAGA+AGG - chr5.2:2119216-2119235 MS.gene21743:intron 35.0%
CAAAAATAAGCCAATCCAAG+CGG - chr5.2:2118180-2118199 MS.gene21743:intron 35.0%
CAAATTTGTACAGCAAACAC+TGG + chr5.2:2120928-2120947 None:intergenic 35.0%
CACTATTAGATTGTCCTATC+AGG - chr5.2:2121287-2121306 MS.gene21743:intron 35.0%
CATTTACAGTCACAGAAAGT+TGG + chr5.2:2118782-2118801 None:intergenic 35.0%
CTGATAGGACAATCTAATAG+TGG + chr5.2:2121289-2121308 None:intergenic 35.0%
GAAAATCTGCTCACAACTAA+TGG - chr5.2:2118801-2118820 MS.gene21743:CDS 35.0%
GAGGGAATTCAAATACTTTG+AGG + chr5.2:2118985-2119004 None:intergenic 35.0%
GAGTTCCATAAGTAAGTTCA+AGG - chr5.2:2119436-2119455 MS.gene21743:intron 35.0%
GATTTAATAACAGTACCCAG+TGG + chr5.2:2119767-2119786 None:intergenic 35.0%
GGAATTCTTAGATTCATGCT+AGG - chr5.2:2119572-2119591 MS.gene21743:intron 35.0%
GGGAATGTAATGTAATGTTG+AGG + chr5.2:2119024-2119043 None:intergenic 35.0%
GGTCTCTAAACTACACTTTA+TGG - chr5.2:2119457-2119476 MS.gene21743:intron 35.0%
TAGTAAGATGAGCTTCTGAT+TGG - chr5.2:2120278-2120297 MS.gene21743:CDS 35.0%
TGTGCAATTCATCAATAGCA+AGG + chr5.2:2119789-2119808 None:intergenic 35.0%
TGTGTTTGGATGAGGTAATT+TGG - chr5.2:2118925-2118944 MS.gene21743:intron 35.0%
TTGAGCCAATTGATTATTCC+TGG + chr5.2:2119890-2119909 None:intergenic 35.0%
TTGCATGAACTTCTTCAGAA+GGG - chr5.2:2119217-2119236 MS.gene21743:intron 35.0%
! AAGTTGTTGCTTAAATCCAC+TGG - chr5.2:2119748-2119767 MS.gene21743:intron 35.0%
! AGTGTAAGGAGCATGAAAAA+AGG + chr5.2:2120384-2120403 None:intergenic 35.0%
! AGTTGTTGCTTAAATCCACT+GGG - chr5.2:2119749-2119768 MS.gene21743:intron 35.0%
! GATGTATTTTATGACAGGCA+TGG - chr5.2:2121160-2121179 MS.gene21743:intron 35.0%
! GGTTTAGCATTTTCTGTTGT+AGG + chr5.2:2120003-2120022 None:intergenic 35.0%
! GTGTAAGGAGCATGAAAAAA+GGG + chr5.2:2120383-2120402 None:intergenic 35.0%
! TCAGCACTTTTATTCTCTCA+CGG - chr5.2:2119829-2119848 MS.gene21743:CDS 35.0%
! TTAGGGAATTTCGGTCTTTT+TGG - chr5.2:2118573-2118592 MS.gene21743:intron 35.0%
! TTGACTCGAAAGTCGTTAAT+AGG - chr5.2:2121564-2121583 MS.gene21743:intron 35.0%
! TTGGTGTTCTTAGAAAGAGT+TGG - chr5.2:2120196-2120215 MS.gene21743:CDS 35.0%
! TTTTTCATGCTCCTTACACT+TGG - chr5.2:2120384-2120403 MS.gene21743:intron 35.0%
!! AGCTGTTTCTACATTTCAAG+AGG - chr5.2:2118345-2118364 MS.gene21743:intron 35.0%
!! GCTGTTTCTACATTTCAAGA+GGG - chr5.2:2118346-2118365 MS.gene21743:intron 35.0%
!! TTGTACTACAAGTTGATTGC+TGG - chr5.2:2121795-2121814 MS.gene21743:CDS 35.0%
!!! CACTTAGGATCTGTTTTGAT+TGG - chr5.2:2117993-2118012 MS.gene21743:intron 35.0%
AATTGCAGTTGTTCCGAAGA+AGG - chr5.2:2121763-2121782 MS.gene21743:CDS 40.0%
ACACAGAATTGTGATGCTCA+AGG + chr5.2:2121641-2121660 None:intergenic 40.0%
ACAGAAAGTTGGGCATATTC+TGG + chr5.2:2118771-2118790 None:intergenic 40.0%
ACATTCCCTCATCCAAACAA+TGG - chr5.2:2119036-2119055 MS.gene21743:intron 40.0%
ATAAAGACATGAGCATCCGT+GGG + chr5.2:2120099-2120118 None:intergenic 40.0%
ATACACTACCACAAACTGCA+GGG + chr5.2:2119515-2119534 None:intergenic 40.0%
ATCCACATGTTATGCAGTTG+TGG - chr5.2:2120684-2120703 MS.gene21743:intron 40.0%
ATTGCAGTTGTTCCGAAGAA+GGG - chr5.2:2121764-2121783 MS.gene21743:CDS 40.0%
CAATGCATGTTGAGTCATCT+AGG + chr5.2:2120553-2120572 None:intergenic 40.0%
CAGTACAGTACCTTGTGAAA+TGG + chr5.2:2118604-2118623 None:intergenic 40.0%
CTAGCAGACAACTATTTAGG+AGG + chr5.2:2120645-2120664 None:intergenic 40.0%
CTAGCCCGAAAAATGCATTT+GGG + chr5.2:2118496-2118515 None:intergenic 40.0%
GACAACTATTTAGGAGGTAG+AGG + chr5.2:2120639-2120658 None:intergenic 40.0%
GACGGATCATTAGAAGTAGA+GGG + chr5.2:2117874-2117893 None:intergenic 40.0%
GCATTCCATTGTTTGGATGA+GGG + chr5.2:2119044-2119063 None:intergenic 40.0%
TAGTTTATCTCCAAGCAGAG+TGG + chr5.2:2121825-2121844 None:intergenic 40.0%
TATACACTACCACAAACTGC+AGG + chr5.2:2119516-2119535 None:intergenic 40.0%
TCAAGAGGGAATAAGCAATG+TGG - chr5.2:2118360-2118379 MS.gene21743:intron 40.0%
TCTAGCCCGAAAAATGCATT+TGG + chr5.2:2118497-2118516 None:intergenic 40.0%
TCTTAGAGTGTGTTTGGATG+GGG + chr5.2:2119118-2119137 None:intergenic 40.0%
TCTTTCCACATGTCATGCAT+TGG + chr5.2:2119721-2119740 None:intergenic 40.0%
TGAATCAAGGAAACGTGCAA+TGG - chr5.2:2117708-2117727 MS.gene21743:CDS 40.0%
TGCATTCCATTGTTTGGATG+AGG + chr5.2:2119045-2119064 None:intergenic 40.0%
TTGAGGTGCATTCCATTGTT+TGG + chr5.2:2119051-2119070 None:intergenic 40.0%
! AACCTGTGAATGCCTACTTT+TGG - chr5.2:2120177-2120196 MS.gene21743:CDS 40.0%
! ATGAGCTTCTGATTGGTTCA+AGG - chr5.2:2120285-2120304 MS.gene21743:CDS 40.0%
! CTAACCCATTTTACTGGAAC+TGG - chr5.2:2120715-2120734 MS.gene21743:intron 40.0%
! CTGCTTGTTACTCAAGAAAG+CGG + chr5.2:2121205-2121224 None:intergenic 40.0%
! GTGAAACTGCAGAAGCTTTT+GGG - chr5.2:2120752-2120771 MS.gene21743:CDS 40.0%
! GTTGAGTCATCTAGGAGTTT+TGG + chr5.2:2120545-2120564 None:intergenic 40.0%
! TCTAAGAGTGTGTTTGGATG+AGG - chr5.2:2118917-2118936 MS.gene21743:intron 40.0%
! TTTAAGGCCTGATGGAACAA+TGG + chr5.2:2118212-2118231 None:intergenic 40.0%
!! CAGTTTTCTTCTGAAAGAGG+AGG - chr5.2:2119178-2119197 MS.gene21743:intron 40.0%
!! CTGCAGTTTTCTTCTGAAAG+AGG - chr5.2:2119175-2119194 MS.gene21743:intron 40.0%
AGAGGGAATAAGCAATGTGG+AGG - chr5.2:2118363-2118382 MS.gene21743:intron 45.0%
ATACCTAGGTCTTCTTCTCC+GGG - chr5.2:2120309-2120328 MS.gene21743:CDS 45.0%
ATCAAGGAAACGTGCAATGG+AGG - chr5.2:2117711-2117730 MS.gene21743:CDS 45.0%
CACCAAAAGTAGGCATTCAC+AGG + chr5.2:2120182-2120201 None:intergenic 45.0%
CATAAAGACATGAGCATCCG+TGG + chr5.2:2120100-2120119 None:intergenic 45.0%
CATACCTAGGTCTTCTTCTC+CGG - chr5.2:2120308-2120327 MS.gene21743:CDS 45.0%
CTCCACAACTGCATAACATG+TGG + chr5.2:2120689-2120708 None:intergenic 45.0%
CTTAGAGTGTGTTTGGATGG+GGG + chr5.2:2119117-2119136 None:intergenic 45.0%
GACCATACCATTGTTCCATC+AGG - chr5.2:2118202-2118221 MS.gene21743:intron 45.0%
GCCACCAGTTCCAGTAAAAT+GGG + chr5.2:2120722-2120741 None:intergenic 45.0%
GGACGGATCATTAGAAGTAG+AGG + chr5.2:2117875-2117894 None:intergenic 45.0%
GGATCATTAGAAGTAGAGGG+TGG + chr5.2:2117871-2117890 None:intergenic 45.0%
GGGCTGTAGTAGTAATGACA+AGG + chr5.2:2119495-2119514 None:intergenic 45.0%
TCAAGCCAATGCATGACATG+TGG - chr5.2:2119713-2119732 MS.gene21743:intron 45.0%
TCATCCGATACACCCAACAA+AGG - chr5.2:2117913-2117932 MS.gene21743:intron 45.0%
TCATTAGAAGTAGAGGGTGG+TGG + chr5.2:2117868-2117887 None:intergenic 45.0%
TGCCACCAGTTCCAGTAAAA+TGG + chr5.2:2120723-2120742 None:intergenic 45.0%
TTGTTGGGTGTATCGGATGA+TGG + chr5.2:2117913-2117932 None:intergenic 45.0%
! ACCCATTTTACTGGAACTGG+TGG - chr5.2:2120718-2120737 MS.gene21743:intron 45.0%
! CAATTGGCTCAATGTCTCCT+AGG - chr5.2:2119898-2119917 MS.gene21743:intron 45.0%
! CGTGAAACTGCAGAAGCTTT+TGG - chr5.2:2120751-2120770 MS.gene21743:CDS 45.0%
! GATTGGTTCAAGGCATACCT+AGG - chr5.2:2120295-2120314 MS.gene21743:CDS 45.0%
! GCAGCACAAAAGTACATGCA+AGG - chr5.2:2119244-2119263 MS.gene21743:intron 45.0%
! TGATGGACGACATAAAGGCA+AGG + chr5.2:2117896-2117915 None:intergenic 45.0%
!! TCGGATGATGGACGACATAA+AGG + chr5.2:2117901-2117920 None:intergenic 45.0%
!! TGGATGGGGGAATGTTTTGA+AGG + chr5.2:2119104-2119123 None:intergenic 45.0%
!! TTTGGTCGTGCCATTTCACA+AGG - chr5.2:2118591-2118610 MS.gene21743:intron 45.0%
!!! TTTTTTTTTACTTATATTTA+AGG + chr5.2:2118228-2118247 None:intergenic 5.0%
ATGGTATGGTCCGCTTGGAT+TGG + chr5.2:2118193-2118212 None:intergenic 50.0%
ATTCCCGGAGAAGAAGACCT+AGG + chr5.2:2120315-2120334 None:intergenic 50.0%
CACCATGTAGATCTGCACCT+AGG + chr5.2:2119918-2119937 None:intergenic 50.0%
CTCCTAGGTGCAGATCTACA+TGG - chr5.2:2119913-2119932 MS.gene21743:intron 50.0%
GAAACGTGCAATGGAGGCTT+TGG - chr5.2:2117717-2117736 MS.gene21743:CDS 50.0%
GAACAATGGTATGGTCCGCT+TGG + chr5.2:2118198-2118217 None:intergenic 50.0%
GGACGACATAAAGGCAAGGA+CGG + chr5.2:2117892-2117911 None:intergenic 50.0%
GGCCTGATGGAACAATGGTA+TGG + chr5.2:2118207-2118226 None:intergenic 50.0%
TACTACAGCCCTGCAGTTTG+TGG - chr5.2:2119504-2119523 MS.gene21743:intron 50.0%
TCTGCTCACAACTAATGGGG+AGG - chr5.2:2118806-2118825 MS.gene21743:CDS 50.0%
! AAAAAGGGTATGCGTGCCAC+TGG + chr5.2:2120368-2120387 None:intergenic 50.0%
! AAAAGGGTATGCGTGCCACT+GGG + chr5.2:2120367-2120386 None:intergenic 50.0%
! CGTGCCACTGGGAATGAAAA+GGG + chr5.2:2120356-2120375 None:intergenic 50.0%
! TCCTCCCTTTTCATTCCCAG+TGG - chr5.2:2120349-2120368 MS.gene21743:CDS 50.0%
GCCACTGGGAATGAAAAGGG+AGG + chr5.2:2120353-2120372 None:intergenic 55.0%
TGCTGGAAAGCCACTCTGCT+TGG - chr5.2:2121812-2121831 MS.gene21743:CDS 55.0%
! GCGTGCCACTGGGAATGAAA+AGG + chr5.2:2120357-2120376 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 2117700 2121868 2117700 ID=MS.gene21743
chr5.2 mRNA 2117700 2121868 2117700 ID=MS.gene21743.t1;Parent=MS.gene21743
chr5.2 exon 2121634 2121868 2121634 ID=MS.gene21743.t1.exon1;Parent=MS.gene21743.t1
chr5.2 CDS 2121634 2121868 2121634 ID=cds.MS.gene21743.t1;Parent=MS.gene21743.t1
chr5.2 exon 2120956 2120991 2120956 ID=MS.gene21743.t1.exon2;Parent=MS.gene21743.t1
chr5.2 CDS 2120956 2120991 2120956 ID=cds.MS.gene21743.t1;Parent=MS.gene21743.t1
chr5.2 exon 2120741 2120814 2120741 ID=MS.gene21743.t1.exon3;Parent=MS.gene21743.t1
chr5.2 CDS 2120741 2120814 2120741 ID=cds.MS.gene21743.t1;Parent=MS.gene21743.t1
chr5.2 exon 2120122 2120387 2120122 ID=MS.gene21743.t1.exon4;Parent=MS.gene21743.t1
chr5.2 CDS 2120122 2120387 2120122 ID=cds.MS.gene21743.t1;Parent=MS.gene21743.t1
chr5.2 exon 2119798 2119866 2119798 ID=MS.gene21743.t1.exon5;Parent=MS.gene21743.t1
chr5.2 CDS 2119798 2119866 2119798 ID=cds.MS.gene21743.t1;Parent=MS.gene21743.t1
chr5.2 exon 2119619 2119677 2119619 ID=MS.gene21743.t1.exon6;Parent=MS.gene21743.t1
chr5.2 CDS 2119619 2119677 2119619 ID=cds.MS.gene21743.t1;Parent=MS.gene21743.t1
chr5.2 exon 2118766 2118867 2118766 ID=MS.gene21743.t1.exon7;Parent=MS.gene21743.t1
chr5.2 CDS 2118766 2118867 2118766 ID=cds.MS.gene21743.t1;Parent=MS.gene21743.t1
chr5.2 exon 2117700 2117797 2117700 ID=MS.gene21743.t1.exon8;Parent=MS.gene21743.t1
chr5.2 CDS 2117700 2117797 2117700 ID=cds.MS.gene21743.t1;Parent=MS.gene21743.t1
Gene Sequence

>MS.gene21743

ATGGCTGCTGAATCAAGGAAACGTGCAATGGAGGCTTTGGAGAGAAGAATTCAAACTGAACATAAACTAAAAGAAAAGAAAAACAAAAGGGATATAAATCATCAACATATCCTAAAAGAAAAGAAAATCATTAAGTCTATAAACGAAGATGTAAAATCATCTATTCCACCACCCTCTACTTCTAATGATCCGTCCTTGCCTTTATGTCGTCCATCATCCGATACACCCAACAAAGGTAATTCAAATTTATCTTGTTTTATTAAGATATACTATTAAGCACTTATTCAATATGACACTTAGGATCTGTTTTGATTGGCTTATTTTTTTAGCTTATGGAAATAAATACGCTTTTATGTTAATTCTTATGTTCTCACTAACGAAAATTGTATCTTCATAAGCTGTTTTTTCATAAACTACATTGACAAGCTTATGAAAATACATAAAAGTTTATTTATTTGCTTAAGCTGTTTTGCATAAGCTCAAAAATAAGCCAATCCAAGCGGACCATACCATTGTTCCATCAGGCCTTAAATATAAGTAAAAAAAAAAGTTAATACATTTATGTGGTTCAAATACATGTACTTTTTGCTTATGATTATTTTTAAGGCTGGAGGGAGTATCATATCATACTAGAGCTTATGCATAAGCTGTTTCTACATTTCAAGAGGGAATAAGCAATGTGGAGGAACTTATGAACATAAGCTGAAAACAGTTCATAATCATATCATAATTCATAAACTATTTTCTTAAGCTCTTCCAAACAGTCATGCAAGTATTTATGTCATAAGATAAACCCAAATGCATTTTTCGGGCTAGAATATAAGATTTTATTCTTGTTTATTGTTAAAGCTGATACTTTTTTATTTCATTTTCTTAGGGAATTTCGGTCTTTTTGGTCGTGCCATTTCACAAGGTACTGTACTGTCGATATAACAGCAAGACTAAGATTCTTTCTTAAGTTTCTTCATTTTGATTTCTGAAGGTTTTGTAATTATATTTAATTTGTAACTTCAATTTATGTGGGAAACTGAAGTAACTAGCTATTAATCTGTAGAGAAAGAAGATGGTCCAGAATATGCCCAACTTTCTGTGACTGTAAATGAAAATCTGCTCACAACTAATGGGGAGGTATTTAATTCAGATCAACTTCTCTTTTATAATTCCAAAAAGTCAATATGTTCAATCTCCTTTGAAGTCTGAACTCTAAAAAGAATTAATCTAAGAGTGTGTTTGGATGAGGTAATTTGGAAATTTTAAAGAATTTAAAATTCTAGACAATATACCTCAAAGTATTTGAATTCCCTCATAACATATTACATTTCCTCAACATTACATTACATTCCCTCATCCAAACAATGGAATGCACCTCAAAGTATTTGAATTCCCTCATAACATTACATTCCTTCAAAACATTCCCCCATCCAAACACACTCTAAGATTATAACTTCCCTGATTGTTCTAATTTGACTTATATTCTGCAGTTTTCTTCTGAAAGAGGAGGTTCAGTTTCCGAAATATTGCATGAACTTCTTCAGAAGGGAGATGCAGCACAAAAGTACATGCAAGGATCTAGAAGCATGAAAATCGACAGCTATATCCTTCTTGATAATTTTGTGCAAGGACGCGCACTTTCTTCATCTTCTCAAACAAGGGCTTTGCAACTTCATTCAAAACGTTCTAAGAAGCACATGTCCATGAAACAACATAAAAAACATGGATCAATGGATCTTCCTAAAGAGTTCCATAAGTAAGTTCAAGGTCTCTAAACTACACTTTATGGAAGTATGTTGGTCCTTGTCATTACTACTACAGCCCTGCAGTTTGTGGTAGTGTATACTGTTGTGAGAAATTTTTCATTTCGTCTTTCATTGGGGAATTCTTAGATTCATGCTAGGAACAAATAAAGTGCTATTCATTTTGCTTTATTCTAATTGCTTAAATTTGTCTACAATGATATTCTTTTGATTACCTAATCAGTAATCACTGTTCATTTTGATTACAGATTTGACATTTTCAAGCCAATGCATGACATGTGGAAAGACTATATAAAGTTGTTGCTTAAATCCACTGGGTACTGTTATTAAATCCTTGCTATTGATGAATTGCACAGATTCTTATCTTCAAGTTTTTCAGCACTTTTATTCTCTCACGGCTTTTGTAATTATGACAACAAACCTGTTTATTGTTCCAGGAATAATCAATTGGCTCAATGTCTCCTAGGTGCAGATCTACATGGTGCTATTATTTTAGGTTTGACCACACTCTATTTTTGTTTTTTGTTTTTGGATGATTTGTGAACACCTACAACAGAAAATGCTAAACCATTTCATTTATCTTGAGCTTTTTGGATAATTACAAGGACAGTTATTTTGTCATTGGTTGGATGTTAATTATTTCCCACGGATGCTCATGTCTTTATGTGTAAATATTTCATATGCATCGAAAGGTGTGTTAAAATTGTTGCGCCGCTGTAATGAAACCTGTGAATGCCTACTTTTGGTGTTCTTAGAAAGAGTTGGAGTAGAAGTATTTTACGCAATCATTGGTATTTTATTGTTGCAACTTGCAATAAGTTCAATAGTAAGATGAGCTTCTGATTGGTTCAAGGCATACCTAGGTCTTCTTCTCCGGGAATGTTTCTCATTTGAATCCTCCCTTTTCATTCCCAGTGGCACGCATACCCTTTTTTCATGCTCCTTACACTTGGATTTTTTTTTTTTTTTAAAGTTGCTAGAACTTATGTTGAATGCTTTTAGGTGGTTATTCGAATCAATTATTTTAAAATGCATTTCTATGAGTGTTGTTTTTAGTTTAATGTTATCATGTTGATAATTTTCTATATCCAAAACTCCTAGATGACTCAACATGCATTGTTTTTCAATTTAGAAAAGAGTTGTGCTTTTGAGACTGCTTCAAAACAAATACAAATTTTTTAGCCTCTACCTCCTAAATAGTTGTCTGCTAGTTATCACTGACTGCACTATATCCACATGTTATGCAGTTGTGGAGTGTAAACTAACCCATTTTACTGGAACTGGTGGCATCATGATTCGTGAAACTGCAGAAGCTTTTGGGATAATCACTGAAGATAATAAATTCCGAGGTAATCCTTTCACTACTTAAAAATAGAATCTGTTCTAGCATTGCCAGAGCTGTTATTCCTGTATTTCTCAAGTATTAATGCTTATTGAATATACACAGTCGTGTGTGTATGCTTTTCTTATACCAGTGTTTGCTGTACAAATTTGATAATTAATGAATAATAAGGAGTTTGCACTTCCGTTTTGAAACTTTAGCATAGTTTAAACAGTAATTGTTTTTGAATTTTTATATAAATTAAAGACTAATGACAAATAATCAATGTGTTCAGTTGCTTTTAAAATGGAGCTTGTGAACATAGAAAAGTACAGCTTATATGTTTGAATGTAAAGGAAAATTTCTGTTTTGTTTAACTTGAGAAGATGTATTTTATGACAGGCATGGAATTTTCTGTTTCATGTTTCCGCTTTCTTGAGTAACAAGCAGATATGATAGTCATTCTTATAAACAATATGGCTGAGATTCTTATTTGGCACTATTAGATTGTCCACTATTAGATTGTCCTATCAGGTTATATCTCAAGTATTCTGCAGAAACCAACCAGATTTGCTACATATAATTGTACGGAGATCTGAAGCTGTTTTAACTTTTAATGTGATCGTATATTTCCTATTGATTTTTTTACTCGTCTGTTTCTAATTTACCTAATTTACGATTGAATCACTTTTTATTTAGGGTAGAATGCTCCAAAGTTTTAGTTAGATCAAAAACCCATTTTCTCTTTCTTAATTCTTCCCCTTTTACTAAGAAAATGAAATATATACTTTGACTCGAAAGTCGTTAATAGGTTCATATGTGACACTTACAATATTATGGCTGAATTGGTTAAGAATTAGTGACCTTGAGCATCACAATTCTGTGTTCCGTTTGCTTAAGTTGAAGTTTTAATGACTTATCAGTTCTGGTATCTATTTTTTCTCTAATATCTTTTCAAACATGTGTTCACCAAATACTTTGATTTGTTAATTGCAGTTGTTCCGAAGAAGGGTTCTGTATTTGTACTACAAGTTGATTGCTGGAAAGCCACTCTGCTTGGAGATAAACTAGATTCAAGAAAGGTTGGATTATGA
Protein sequence

>MS.gene21743.t1

MAAESRKRAMEALERRIQTEHKLKEKKNKRDINHQHILKEKKIIKSINEDVKSSIPPPSTSNDPSLPLCRPSSDTPNKGNFGLFGRAISQEKEDGPEYAQLSVTVNENLLTTNGEFSSERGGSVSEILHELLQKGDAAQKYMQGSRSMKIDSYILLDNFVQGRALSSSSQTRALQLHSKRSKKHMSMKQHKKHGSMDLPKEFHKFDIFKPMHDMWKDYIKLLLKSTGNNQLAQCLLGADLHGAIILVVECKLTHFTGTGGIMIRETAEAFGIITEDNKFRVVPKKGSVFVLQVDCWKATLLGDKLDSRKVGL