Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21941.t1 | XP_003610951.1 | 98.7 | 371 | 5 | 0 | 1 | 371 | 1 | 371 | 3.80E-211 | 743.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21941.t1 | Q9T0G0 | 66.5 | 349 | 109 | 4 | 1 | 347 | 2 | 344 | 1.4e-132 | 474.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21941.t1 | G7K984 | 98.7 | 371 | 5 | 0 | 1 | 371 | 1 | 371 | 2.8e-211 | 743.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene21941 | MS.gene030460 | PPI |
| MS.gene21941 | MS.gene000539 | PPI |
| MS.gene21941 | MS.gene063266 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21941.t1 | MTR_5g008850 | 98.652 | 371 | 5 | 0 | 1 | 371 | 1 | 371 | 0.0 | 764 |
| MS.gene21941.t1 | MTR_8g096620 | 43.887 | 319 | 162 | 6 | 1 | 311 | 1 | 310 | 1.15e-79 | 248 |
| MS.gene21941.t1 | MTR_8g096580 | 40.323 | 310 | 170 | 4 | 1 | 309 | 1 | 296 | 1.17e-73 | 232 |
| MS.gene21941.t1 | MTR_8g096610 | 31.776 | 214 | 111 | 9 | 103 | 309 | 31 | 216 | 9.21e-16 | 76.3 |
| MS.gene21941.t1 | MTR_1g082760 | 25.210 | 238 | 161 | 6 | 38 | 267 | 33 | 261 | 1.47e-12 | 67.8 |
| MS.gene21941.t1 | MTR_7g113650 | 23.529 | 255 | 178 | 6 | 38 | 284 | 33 | 278 | 4.28e-12 | 66.6 |
| MS.gene21941.t1 | MTR_7g080410 | 27.962 | 211 | 128 | 8 | 43 | 241 | 36 | 234 | 3.05e-11 | 63.9 |
| MS.gene21941.t1 | MTR_7g080410 | 27.962 | 211 | 128 | 8 | 43 | 241 | 36 | 234 | 3.77e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21941.t1 | AT4G10020 | 63.784 | 370 | 113 | 5 | 1 | 355 | 2 | 365 | 1.30e-173 | 489 |
| MS.gene21941.t1 | AT5G50600 | 42.985 | 335 | 173 | 3 | 1 | 332 | 1 | 320 | 9.38e-85 | 261 |
| MS.gene21941.t1 | AT5G50700 | 42.985 | 335 | 173 | 3 | 1 | 332 | 1 | 320 | 9.38e-85 | 261 |
| MS.gene21941.t1 | AT5G50690 | 39.803 | 304 | 171 | 2 | 1 | 304 | 1 | 292 | 3.16e-69 | 219 |
| MS.gene21941.t1 | AT5G50590 | 39.803 | 304 | 171 | 2 | 1 | 304 | 1 | 292 | 3.16e-69 | 219 |
| MS.gene21941.t1 | AT3G47350 | 37.582 | 306 | 176 | 3 | 1 | 306 | 1 | 291 | 6.79e-69 | 219 |
| MS.gene21941.t1 | AT5G50770 | 38.730 | 315 | 185 | 2 | 1 | 312 | 1 | 310 | 2.76e-68 | 219 |
| MS.gene21941.t1 | AT3G47360 | 36.013 | 311 | 185 | 2 | 1 | 311 | 1 | 297 | 1.45e-62 | 203 |
| MS.gene21941.t1 | AT3G47350 | 40.000 | 255 | 147 | 2 | 1 | 255 | 1 | 249 | 5.66e-62 | 202 |
| MS.gene21941.t1 | AT5G50690 | 42.276 | 246 | 137 | 1 | 1 | 246 | 1 | 241 | 1.35e-59 | 193 |
| MS.gene21941.t1 | AT5G50590 | 42.276 | 246 | 137 | 1 | 1 | 246 | 1 | 241 | 1.35e-59 | 193 |
| MS.gene21941.t1 | AT3G47350 | 32.353 | 306 | 148 | 5 | 1 | 306 | 1 | 247 | 5.64e-46 | 158 |
| MS.gene21941.t1 | AT3G05260 | 26.471 | 238 | 157 | 8 | 38 | 267 | 30 | 257 | 5.39e-14 | 72.0 |
| MS.gene21941.t1 | AT3G03330 | 25.758 | 198 | 136 | 6 | 43 | 234 | 39 | 231 | 1.31e-11 | 65.5 |
Find 98 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAGAGTTTCTTCTTATTT+AGG | 0.129280 | 5.1:-2834493 | MS.gene21941:CDS |
| ACCACGACCAAAGACATTTA+TGG | 0.185510 | 5.1:+2836182 | None:intergenic |
| GGAGAGTTTCTTCTTATTTA+GGG | 0.241156 | 5.1:-2834492 | MS.gene21941:CDS |
| TGGCTCTTTAACTATAATTA+TGG | 0.280186 | 5.1:-2836518 | MS.gene21941:CDS |
| CCTTGTGAATACAGTAAGTT+TGG | 0.283041 | 5.1:-2835783 | MS.gene21941:CDS |
| TTGTCCCTTGTGGGGAAATA+AGG | 0.286930 | 5.1:+2834515 | None:intergenic |
| ATGTTCTCAATTGGGCATTT+AGG | 0.291988 | 5.1:-2834540 | MS.gene21941:CDS |
| AATGAAACCATAAATGTCTT+TGG | 0.311625 | 5.1:-2836189 | MS.gene21941:CDS |
| CGAAGAGAGCATAGGCTAAT+AGG | 0.322565 | 5.1:-2836303 | MS.gene21941:CDS |
| TTGCTCCAAATGTTCTCAAT+TGG | 0.334210 | 5.1:-2834549 | MS.gene21941:CDS |
| CTATAATTATGGTGAAGATA+TGG | 0.336256 | 5.1:-2836507 | MS.gene21941:CDS |
| AGCAAGACATGTTATGATTA+TGG | 0.339422 | 5.1:-2836253 | MS.gene21941:CDS |
| TGATGTATTCTTGCTGTATA+GGG | 0.342416 | 5.1:-2834575 | MS.gene21941:CDS |
| ATGATGTATTCTTGCTGTAT+AGG | 0.353634 | 5.1:-2834576 | MS.gene21941:CDS |
| GCCAATGTGATCAAACTTGC+TGG | 0.376064 | 5.1:+2836581 | None:intergenic |
| TGACACTGTCACTGGTGGTA+TGG | 0.385040 | 5.1:-2834455 | MS.gene21941:CDS |
| AATGCCCAATTGAGAACATT+TGG | 0.386127 | 5.1:+2834544 | None:intergenic |
| ATGGTTCCACTTACATTCTC+TGG | 0.400159 | 5.1:-2834388 | MS.gene21941:CDS |
| GTTGCATCTGGTGACTCAAT+TGG | 0.403327 | 5.1:+2834365 | None:intergenic |
| TGCTCCAAATGTTCTCAATT+GGG | 0.404590 | 5.1:-2834548 | MS.gene21941:CDS |
| TAATAACACGACCGTTGCTT+TGG | 0.410977 | 5.1:+2835525 | None:intergenic |
| TTGCATATGAGTATGCAATA+AGG | 0.412653 | 5.1:-2836350 | MS.gene21941:CDS |
| TTGCCAAGGATGAGTTTGTT+TGG | 0.413187 | 5.1:-2835473 | MS.gene21941:CDS |
| GACACTGTCACTGGTGGTAT+GGG | 0.429885 | 5.1:-2834454 | MS.gene21941:CDS |
| CATATGTGAAGTTTCCTAGT+TGG | 0.432557 | 5.1:-2834600 | MS.gene21941:CDS |
| GGAGAAGTTCCCTCCAACAT+AGG | 0.445854 | 5.1:+2834427 | None:intergenic |
| AAACTCTCCTTGTCCCTTGT+GGG | 0.451143 | 5.1:+2834506 | None:intergenic |
| GAAATTCTCACCAAGAGAAC+AGG | 0.452904 | 5.1:+2835716 | None:intergenic |
| GTTTCTTCTTATTTAGGGAC+AGG | 0.486130 | 5.1:-2834487 | MS.gene21941:CDS |
| CTTGTGAATACAGTAAGTTT+GGG | 0.492775 | 5.1:-2835782 | MS.gene21941:CDS |
| TTTGCAAGGTTGATTGTAAG+TGG | 0.495388 | 5.1:-2834640 | MS.gene21941:CDS |
| AGTAAAGTTGTCATCATCAC+TGG | 0.495753 | 5.1:-2836482 | MS.gene21941:CDS |
| ACTGGAGCATCTTCTGCCAT+TGG | 0.496925 | 5.1:-2836464 | MS.gene21941:CDS |
| TGCTGAGAATGCAAGGCGAA+TGG | 0.503881 | 5.1:-2836277 | MS.gene21941:CDS |
| ACCATAAATGTCTTTGGTCG+TGG | 0.504643 | 5.1:-2836183 | MS.gene21941:intron |
| GAGAGCAAATTTAATGTTGG+TGG | 0.506436 | 5.1:-2836328 | MS.gene21941:CDS |
| CCGTTGCTTTGGTGAAGGTA+AGG | 0.507356 | 5.1:+2835536 | None:intergenic |
| GCTGAGAATGCAAGGCGAAT+GGG | 0.510761 | 5.1:-2836276 | MS.gene21941:CDS |
| AAGGAGAGCAAATTTAATGT+TGG | 0.513576 | 5.1:-2836331 | MS.gene21941:CDS |
| TGATCACATTGGCTTTCTCA+TGG | 0.514950 | 5.1:-2836571 | MS.gene21941:CDS |
| ATAGCAACACATGGTTGGAT+TGG | 0.526999 | 5.1:-2835243 | MS.gene21941:CDS |
| ACACCAAACAAACTCATCCT+TGG | 0.527782 | 5.1:+2835470 | None:intergenic |
| TCAATGCATCAGTTGAGAGT+TGG | 0.528271 | 5.1:-2835502 | MS.gene21941:CDS |
| AGATCCCTTGACACTGTCAC+TGG | 0.528905 | 5.1:-2834463 | MS.gene21941:CDS |
| TGGTATGGGGAGACCTATGT+TGG | 0.530458 | 5.1:-2834440 | MS.gene21941:CDS |
| TTTGAATTGAAAGACGAGGT+TGG | 0.530727 | 5.1:-2835273 | MS.gene21941:CDS |
| GAAACTCTCCTTGTCCCTTG+TGG | 0.532546 | 5.1:+2834505 | None:intergenic |
| CAAGTTCATGCTAGAGGAGG+GGG | 0.534060 | 5.1:-2835202 | MS.gene21941:CDS |
| GAGTCACCAGATGCAACAAA+AGG | 0.544526 | 5.1:-2834359 | MS.gene21941:CDS |
| TTGGCAACTTGCCTCTCCAA+TGG | 0.547635 | 5.1:+2836448 | None:intergenic |
| TGCAAGGTTGATTGTAAGTG+GGG | 0.547799 | 5.1:-2834638 | MS.gene21941:CDS |
| TTGCAAGGTTGATTGTAAGT+GGG | 0.549501 | 5.1:-2834639 | MS.gene21941:CDS |
| GTTTCCTCAATGCTTGTGAG+TGG | 0.554913 | 5.1:-2836538 | MS.gene21941:CDS |
| TCCAGCAAGTTTGATCACAT+TGG | 0.555899 | 5.1:-2836582 | MS.gene21941:CDS |
| ATTGTAAGTGGGGCATGTAG+AGG | 0.556954 | 5.1:-2834628 | MS.gene21941:CDS |
| AGAGTTGGCTACCTTTGCCA+AGG | 0.557855 | 5.1:-2835487 | MS.gene21941:CDS |
| TTATTTCCCCACAAGGGACA+AGG | 0.559249 | 5.1:-2834513 | MS.gene21941:CDS |
| GGCAAGTTCATGCTAGAGGA+GGG | 0.566062 | 5.1:-2835204 | MS.gene21941:CDS |
| TCACCAGATGCAACAAAAGG+TGG | 0.571602 | 5.1:-2834356 | MS.gene21941:CDS |
| TAGGAATTGCTGAGAATGCA+AGG | 0.574860 | 5.1:-2836284 | MS.gene21941:CDS |
| TAACGATAGCAACACATGGT+TGG | 0.576646 | 5.1:-2835248 | MS.gene21941:CDS |
| AATTGGCCAGAGAATGTAAG+TGG | 0.578070 | 5.1:+2834382 | None:intergenic |
| AACTCTCCTTGTCCCTTGTG+GGG | 0.578247 | 5.1:+2834507 | None:intergenic |
| CACGACCGTTGCTTTGGTGA+AGG | 0.579262 | 5.1:+2835531 | None:intergenic |
| GGGGAATGTTTATCCAACGT+TGG | 0.581313 | 5.1:-2835567 | MS.gene21941:CDS |
| TACCACCAGTGACAGTGTCA+AGG | 0.582504 | 5.1:+2834458 | None:intergenic |
| GCATTGAGGAAACAAAGTGC+TGG | 0.583396 | 5.1:+2836548 | None:intergenic |
| GCAAGTTCATGCTAGAGGAG+GGG | 0.593135 | 5.1:-2835203 | MS.gene21941:CDS |
| GAATGTTTATCCAACGTTGG+TGG | 0.596275 | 5.1:-2835564 | MS.gene21941:CDS |
| AGGCAAGTTCATGCTAGAGG+AGG | 0.598499 | 5.1:-2835205 | MS.gene21941:CDS |
| GGCTCCTTATTTCCCCACAA+GGG | 0.606717 | 5.1:-2834519 | MS.gene21941:CDS |
| AGAGCCACTCACAAGCATTG+AGG | 0.607148 | 5.1:+2836534 | None:intergenic |
| TCCTAGTCATCACACAGGCA+TGG | 0.607181 | 5.1:-2834407 | MS.gene21941:CDS |
| AGGCTCCTTATTTCCCCACA+AGG | 0.610610 | 5.1:-2834520 | MS.gene21941:CDS |
| ACCACCAGTGACAGTGTCAA+GGG | 0.610662 | 5.1:+2834459 | None:intergenic |
| CATGTAATGTAAGGCTGCAA+AGG | 0.613357 | 5.1:-2835328 | MS.gene21941:intron |
| TAAGGAAGAGCCACCAACGT+TGG | 0.613929 | 5.1:+2835554 | None:intergenic |
| AGCATCTTCTGCCATTGGAG+AGG | 0.616348 | 5.1:-2836459 | MS.gene21941:CDS |
| AACAAACTCATCCTTGGCAA+AGG | 0.620180 | 5.1:+2835476 | None:intergenic |
| TATGGCAGCAGATGTTGTCA+AGG | 0.628152 | 5.1:-2836235 | MS.gene21941:CDS |
| AAGAATACATCATACCAACT+AGG | 0.632930 | 5.1:+2834586 | None:intergenic |
| AAGCAGTAGAAGAATTTGCA+AGG | 0.634067 | 5.1:-2834654 | MS.gene21941:CDS |
| CCTTACCTTCACCAAAGCAA+CGG | 0.636544 | 5.1:-2835536 | MS.gene21941:CDS |
| TATGGGGAGACCTATGTTGG+AGG | 0.640356 | 5.1:-2834437 | MS.gene21941:CDS |
| TCCCTTGACACTGTCACTGG+TGG | 0.643537 | 5.1:-2834460 | MS.gene21941:CDS |
| TGGTGGCACGAAGAGAGCAT+AGG | 0.647406 | 5.1:-2836311 | MS.gene21941:CDS |
| GCGATTTGAATTGAAAGACG+AGG | 0.653464 | 5.1:-2835277 | MS.gene21941:CDS |
| GAGAGGCAAGTTCATGCTAG+AGG | 0.654649 | 5.1:-2835208 | MS.gene21941:CDS |
| ATGTGATCAAACTTGCTGGA+GGG | 0.657173 | 5.1:+2836585 | None:intergenic |
| ACCATGCCTGTGTGATGACT+AGG | 0.657821 | 5.1:+2834406 | None:intergenic |
| ACACTGTCACTGGTGGTATG+GGG | 0.658826 | 5.1:-2834453 | MS.gene21941:CDS |
| CCAAACTTACTGTATTCACA+AGG | 0.664927 | 5.1:+2835783 | None:intergenic |
| ATGGGGAGACCTATGTTGGA+GGG | 0.664995 | 5.1:-2834436 | MS.gene21941:CDS |
| TGAATTTAGATGCATGTGAG+TGG | 0.689132 | 5.1:-2834679 | MS.gene21941:intron |
| AATGTGATCAAACTTGCTGG+AGG | 0.689941 | 5.1:+2836584 | None:intergenic |
| ATTGGAAGTGAAATGACGAG+AGG | 0.705490 | 5.1:-2835225 | MS.gene21941:CDS |
| GGAGTAACGATAGCAACACA+TGG | 0.734647 | 5.1:-2835252 | MS.gene21941:CDS |
| ACTTCTCCTAGTCATCACAC+AGG | 0.770032 | 5.1:-2834412 | MS.gene21941:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAATAGCTTATATAT+AGG | - | chr5.1:2834940-2834959 | MS.gene21941:intron | 10.0% |
| !!! | TTTTTAGGATATTAATTTTT+GGG | - | chr5.1:2835383-2835402 | MS.gene21941:intron | 10.0% |
| !! | ATATACCATATATGTAATTA+TGG | - | chr5.1:2836108-2836127 | MS.gene21941:intron | 15.0% |
| !! | TAACAATTAACATTTAATGT+TGG | - | chr5.1:2835985-2836004 | MS.gene21941:intron | 15.0% |
| !! | TTTATCCATAATTACATATA+TGG | + | chr5.1:2836116-2836135 | None:intergenic | 15.0% |
| !!! | AAACTTTAATACAAACATTT+TGG | + | chr5.1:2834545-2834564 | None:intergenic | 15.0% |
| !!! | CTTTTTAGGATATTAATTTT+TGG | - | chr5.1:2835382-2835401 | MS.gene21941:intron | 15.0% |
| !!! | TGTTATTTTTTCTTTTTTGA+GGG | + | chr5.1:2835944-2835963 | None:intergenic | 15.0% |
| !!! | TTTTAGGATATTAATTTTTG+GGG | - | chr5.1:2835384-2835403 | MS.gene21941:intron | 15.0% |
| !! | ATTGCACATTAATTAACTAA+TGG | - | chr5.1:2835054-2835073 | MS.gene21941:intron | 20.0% |
| !! | CATATTAATATGAGATAATG+TGG | - | chr5.1:2835358-2835377 | MS.gene21941:intron | 20.0% |
| !! | CTTATTAATTTAAAGAGTCA+TGG | + | chr5.1:2835137-2835156 | None:intergenic | 20.0% |
| !!! | GTGTTATTTTTTCTTTTTTG+AGG | + | chr5.1:2835945-2835964 | None:intergenic | 20.0% |
| !!! | TTTAGGATATTAATTTTTGG+GGG | - | chr5.1:2835385-2835404 | MS.gene21941:intron | 20.0% |
| ! | AAATGTGTAAAAAAGTCCAA+CGG | + | chr5.1:2834915-2834934 | None:intergenic | 25.0% |
| ! | AAGCTGTTTATTCAAACATT+AGG | - | chr5.1:2834982-2835001 | MS.gene21941:intron | 25.0% |
| ! | AATGAAACCATAAATGTCTT+TGG | - | chr5.1:2834782-2834801 | MS.gene21941:intron | 25.0% |
| ! | ACACTATAGTTATAGTCAAT+TGG | - | chr5.1:2835855-2835874 | MS.gene21941:intron | 25.0% |
| ! | CAAATTAGTATGTACTACTT+CGG | + | chr5.1:2836253-2836272 | None:intergenic | 25.0% |
| ! | CAATATGAATGATATGTGAA+AGG | + | chr5.1:2835038-2835057 | None:intergenic | 25.0% |
| ! | CTATAATTATGGTGAAGATA+TGG | - | chr5.1:2834464-2834483 | MS.gene21941:CDS | 25.0% |
| ! | TGGCTCTTTAACTATAATTA+TGG | - | chr5.1:2834453-2834472 | MS.gene21941:CDS | 25.0% |
| !!! | GTTTTTTCATGTGTATGATT+TGG | - | chr5.1:2834585-2834604 | MS.gene21941:CDS | 25.0% |
| !!! | TTTAATTTTGCTGTTCTGTT+TGG | - | chr5.1:2835604-2835623 | MS.gene21941:intron | 25.0% |
| AAGAATACATCATACCAACT+AGG | + | chr5.1:2836388-2836407 | None:intergenic | 30.0% | |
| AAGGAGAGCAAATTTAATGT+TGG | - | chr5.1:2834640-2834659 | MS.gene21941:CDS | 30.0% | |
| ACATTAGGCTTATTGCATTA+AGG | - | chr5.1:2834997-2835016 | MS.gene21941:intron | 30.0% | |
| AGCAAGACATGTTATGATTA+TGG | - | chr5.1:2834718-2834737 | MS.gene21941:intron | 30.0% | |
| CTTGTGAATACAGTAAGTTT+GGG | - | chr5.1:2835189-2835208 | MS.gene21941:CDS | 30.0% | |
| TAAACACTTGTGAGAATGTT+CGG | - | chr5.1:2834853-2834872 | MS.gene21941:intron | 30.0% | |
| TAGTTATAGTCAATTGGACA+CGG | - | chr5.1:2835861-2835880 | MS.gene21941:intron | 30.0% | |
| TATGAATGATATGTGAAAGG+TGG | + | chr5.1:2835035-2835054 | None:intergenic | 30.0% | |
| TGGATCCTTCAAAATTTGAA+AGG | - | chr5.1:2836005-2836024 | MS.gene21941:intron | 30.0% | |
| TTGCATATGAGTATGCAATA+AGG | - | chr5.1:2834621-2834640 | MS.gene21941:CDS | 30.0% | |
| ! | AGCAAAAAAGTACATGTATG+TGG | - | chr5.1:2836177-2836196 | MS.gene21941:intron | 30.0% |
| ! | AGGAGAGTTTCTTCTTATTT+AGG | - | chr5.1:2836478-2836497 | MS.gene21941:CDS | 30.0% |
| ! | ATGATGTATTCTTGCTGTAT+AGG | - | chr5.1:2836395-2836414 | MS.gene21941:intron | 30.0% |
| ! | GGAGAGTTTCTTCTTATTTA+GGG | - | chr5.1:2836479-2836498 | MS.gene21941:CDS | 30.0% |
| ! | TAGCACCTTTCAAATTTTGA+AGG | + | chr5.1:2836013-2836032 | None:intergenic | 30.0% |
| ! | TGAGATAATGTGGTCTTTTT+AGG | - | chr5.1:2835368-2835387 | MS.gene21941:intron | 30.0% |
| ! | TGATGTATTCTTGCTGTATA+GGG | - | chr5.1:2836396-2836415 | MS.gene21941:intron | 30.0% |
| AAGCAGTAGAAGAATTTGCA+AGG | - | chr5.1:2836317-2836336 | MS.gene21941:CDS | 35.0% | |
| AATGCCCAATTGAGAACATT+TGG | + | chr5.1:2836430-2836449 | None:intergenic | 35.0% | |
| AGTAAAGTTGTCATCATCAC+TGG | - | chr5.1:2834489-2834508 | MS.gene21941:CDS | 35.0% | |
| ATGTTCTCAATTGGGCATTT+AGG | - | chr5.1:2836431-2836450 | MS.gene21941:intron | 35.0% | |
| CATATGTGAAGTTTCCTAGT+TGG | - | chr5.1:2836371-2836390 | MS.gene21941:intron | 35.0% | |
| CCAAACTTACTGTATTCACA+AGG | + | chr5.1:2835191-2835210 | None:intergenic | 35.0% | |
| CCTTGTGAATACAGTAAGTT+TGG | - | chr5.1:2835188-2835207 | MS.gene21941:CDS | 35.0% | |
| GAGAGCAAATTTAATGTTGG+TGG | - | chr5.1:2834643-2834662 | MS.gene21941:CDS | 35.0% | |
| TGAAAATGCAACTTGTAGCA+AGG | + | chr5.1:2835830-2835849 | None:intergenic | 35.0% | |
| TGAATTTAGATGCATGTGAG+TGG | - | chr5.1:2836292-2836311 | MS.gene21941:CDS | 35.0% | |
| TGCTCCAAATGTTCTCAATT+GGG | - | chr5.1:2836423-2836442 | MS.gene21941:intron | 35.0% | |
| TGTCATGTGCATGTAATGTA+AGG | - | chr5.1:2835634-2835653 | MS.gene21941:intron | 35.0% | |
| TTGCTCCAAATGTTCTCAAT+TGG | - | chr5.1:2836422-2836441 | MS.gene21941:intron | 35.0% | |
| TTTGAATTGAAAGACGAGGT+TGG | - | chr5.1:2835698-2835717 | MS.gene21941:intron | 35.0% | |
| ! | GTTTCTTCTTATTTAGGGAC+AGG | - | chr5.1:2836484-2836503 | MS.gene21941:CDS | 35.0% |
| ! | TTGCAAGGTTGATTGTAAGT+GGG | - | chr5.1:2836332-2836351 | MS.gene21941:CDS | 35.0% |
| ! | TTTGCAAGGTTGATTGTAAG+TGG | - | chr5.1:2836331-2836350 | MS.gene21941:CDS | 35.0% |
| !!! | GTGGTCTATATTTTTAGACC+TGG | - | chr5.1:2836196-2836215 | MS.gene21941:CDS | 35.0% |
| AAAGTCCAACGGCTTCATAT+AGG | + | chr5.1:2834904-2834923 | None:intergenic | 40.0% | |
| AACAAACTCATCCTTGGCAA+AGG | + | chr5.1:2835498-2835517 | None:intergenic | 40.0% | |
| AATTGGCCAGAGAATGTAAG+TGG | + | chr5.1:2836592-2836611 | None:intergenic | 40.0% | |
| ACACCAAACAAACTCATCCT+TGG | + | chr5.1:2835504-2835523 | None:intergenic | 40.0% | |
| ACCACGACCAAAGACATTTA+TGG | + | chr5.1:2834792-2834811 | None:intergenic | 40.0% | |
| ACCATAAATGTCTTTGGTCG+TGG | - | chr5.1:2834788-2834807 | MS.gene21941:intron | 40.0% | |
| ATAGCAACACATGGTTGGAT+TGG | - | chr5.1:2835728-2835747 | MS.gene21941:CDS | 40.0% | |
| ATGGTTCCACTTACATTCTC+TGG | - | chr5.1:2836583-2836602 | MS.gene21941:CDS | 40.0% | |
| ATTGGAAGTGAAATGACGAG+AGG | - | chr5.1:2835746-2835765 | MS.gene21941:CDS | 40.0% | |
| CAAGAGAACAGGAAAAACTG+AGG | + | chr5.1:2835247-2835266 | None:intergenic | 40.0% | |
| CATGTAATGTAAGGCTGCAA+AGG | - | chr5.1:2835643-2835662 | MS.gene21941:intron | 40.0% | |
| GAAATTCTCACCAAGAGAAC+AGG | + | chr5.1:2835258-2835277 | None:intergenic | 40.0% | |
| GAATGTTTATCCAACGTTGG+TGG | - | chr5.1:2835407-2835426 | MS.gene21941:intron | 40.0% | |
| GCGATTTGAATTGAAAGACG+AGG | - | chr5.1:2835694-2835713 | MS.gene21941:intron | 40.0% | |
| TAACGATAGCAACACATGGT+TGG | - | chr5.1:2835723-2835742 | MS.gene21941:intron | 40.0% | |
| TAATAACACGACCGTTGCTT+TGG | + | chr5.1:2835449-2835468 | None:intergenic | 40.0% | |
| TAGGAATTGCTGAGAATGCA+AGG | - | chr5.1:2834687-2834706 | MS.gene21941:intron | 40.0% | |
| TATAGCCTATATGAAGCCGT+TGG | - | chr5.1:2834896-2834915 | MS.gene21941:intron | 40.0% | |
| TATAGTCAATTGGACACGGT+TGG | - | chr5.1:2835865-2835884 | MS.gene21941:intron | 40.0% | |
| TCAATGCATCAGTTGAGAGT+TGG | - | chr5.1:2835469-2835488 | MS.gene21941:intron | 40.0% | |
| TCCAGCAAGTTTGATCACAT+TGG | - | chr5.1:2834389-2834408 | MS.gene21941:CDS | 40.0% | |
| TTGGTCGTGGTATGTTTCTT+TGG | - | chr5.1:2834801-2834820 | MS.gene21941:intron | 40.0% | |
| ! | AATCCACCTTTTGTTGCATC+TGG | + | chr5.1:2836621-2836640 | None:intergenic | 40.0% |
| ! | CAAAAAAGTACATGCACACC+AGG | + | chr5.1:2836217-2836236 | None:intergenic | 40.0% |
| ! | CTCAGTTTTTCCTGTTCTCT+TGG | - | chr5.1:2835245-2835264 | MS.gene21941:CDS | 40.0% |
| ! | TGCAAGGTTGATTGTAAGTG+GGG | - | chr5.1:2836333-2836352 | MS.gene21941:CDS | 40.0% |
| ! | TTGCCAAGGATGAGTTTGTT+TGG | - | chr5.1:2835498-2835517 | MS.gene21941:CDS | 40.0% |
| !! | AATGTGATCAAACTTGCTGG+AGG | + | chr5.1:2834390-2834409 | None:intergenic | 40.0% |
| !! | ATGTGATCAAACTTGCTGGA+GGG | + | chr5.1:2834389-2834408 | None:intergenic | 40.0% |
| !! | TGATCACATTGGCTTTCTCA+TGG | - | chr5.1:2834400-2834419 | MS.gene21941:CDS | 40.0% |
| AAACTCTCCTTGTCCCTTGT+GGG | + | chr5.1:2836468-2836487 | None:intergenic | 45.0% | |
| ACTTCTCCTAGTCATCACAC+AGG | - | chr5.1:2836559-2836578 | MS.gene21941:CDS | 45.0% | |
| ATTGTAAGTGGGGCATGTAG+AGG | - | chr5.1:2836343-2836362 | MS.gene21941:CDS | 45.0% | |
| CCTTACCTTCACCAAAGCAA+CGG | - | chr5.1:2835435-2835454 | MS.gene21941:intron | 45.0% | |
| GAGTCACCAGATGCAACAAA+AGG | - | chr5.1:2836612-2836631 | MS.gene21941:CDS | 45.0% | |
| GCATTGAGGAAACAAAGTGC+TGG | + | chr5.1:2834426-2834445 | None:intergenic | 45.0% | |
| GCCAATGTGATCAAACTTGC+TGG | + | chr5.1:2834393-2834412 | None:intergenic | 45.0% | |
| GGAGTAACGATAGCAACACA+TGG | - | chr5.1:2835719-2835738 | MS.gene21941:intron | 45.0% | |
| GGGGAATGTTTATCCAACGT+TGG | - | chr5.1:2835404-2835423 | MS.gene21941:intron | 45.0% | |
| GTTGCATCTGGTGACTCAAT+TGG | + | chr5.1:2836609-2836628 | None:intergenic | 45.0% | |
| GTTTCCTCAATGCTTGTGAG+TGG | - | chr5.1:2834433-2834452 | MS.gene21941:CDS | 45.0% | |
| TATGGCAGCAGATGTTGTCA+AGG | - | chr5.1:2834736-2834755 | MS.gene21941:intron | 45.0% | |
| TCACCAGATGCAACAAAAGG+TGG | - | chr5.1:2836615-2836634 | MS.gene21941:CDS | 45.0% | |
| TTATTTCCCCACAAGGGACA+AGG | - | chr5.1:2836458-2836477 | MS.gene21941:CDS | 45.0% | |
| TTGTCCCTTGTGGGGAAATA+AGG | + | chr5.1:2836459-2836478 | None:intergenic | 45.0% | |
| ! | CAATTGGACACGGTTGGTAT+TGG | - | chr5.1:2835871-2835890 | MS.gene21941:intron | 45.0% |
| ! | CGAAGAGAGCATAGGCTAAT+AGG | - | chr5.1:2834668-2834687 | MS.gene21941:CDS | 45.0% |
| !! | TTTAAATTAATAAGAAAATT+TGG | - | chr5.1:2835143-2835162 | MS.gene21941:intron | 5.0% |
| !!! | ATATTAATTTTAAATGAATT+AGG | + | chr5.1:2835316-2835335 | None:intergenic | 5.0% |
| !!! | TATTAATTTTAAATGAATTA+GGG | + | chr5.1:2835315-2835334 | None:intergenic | 5.0% |
| AACTCTCCTTGTCCCTTGTG+GGG | + | chr5.1:2836467-2836486 | None:intergenic | 50.0% | |
| ACACTGTCACTGGTGGTATG+GGG | - | chr5.1:2836518-2836537 | MS.gene21941:CDS | 50.0% | |
| ACCACCAGTGACAGTGTCAA+GGG | + | chr5.1:2836515-2836534 | None:intergenic | 50.0% | |
| ACCATGCCTGTGTGATGACT+AGG | + | chr5.1:2836568-2836587 | None:intergenic | 50.0% | |
| AGAGTTGGCTACCTTTGCCA+AGG | - | chr5.1:2835484-2835503 | MS.gene21941:CDS | 50.0% | |
| AGATCCCTTGACACTGTCAC+TGG | - | chr5.1:2836508-2836527 | MS.gene21941:CDS | 50.0% | |
| AGCATCTTCTGCCATTGGAG+AGG | - | chr5.1:2834512-2834531 | MS.gene21941:CDS | 50.0% | |
| AGGCAAGTTCATGCTAGAGG+AGG | - | chr5.1:2835766-2835785 | MS.gene21941:CDS | 50.0% | |
| ATGGGGAGACCTATGTTGGA+GGG | - | chr5.1:2836535-2836554 | MS.gene21941:CDS | 50.0% | |
| CAAGTTCATGCTAGAGGAGG+GGG | - | chr5.1:2835769-2835788 | MS.gene21941:CDS | 50.0% | |
| GAAACTCTCCTTGTCCCTTG+TGG | + | chr5.1:2836469-2836488 | None:intergenic | 50.0% | |
| GACACTGTCACTGGTGGTAT+GGG | - | chr5.1:2836517-2836536 | MS.gene21941:CDS | 50.0% | |
| GAGAGGCAAGTTCATGCTAG+AGG | - | chr5.1:2835763-2835782 | MS.gene21941:CDS | 50.0% | |
| GCAAGTTCATGCTAGAGGAG+GGG | - | chr5.1:2835768-2835787 | MS.gene21941:CDS | 50.0% | |
| GCTGAGAATGCAAGGCGAAT+GGG | - | chr5.1:2834695-2834714 | MS.gene21941:intron | 50.0% | |
| GGAGAAGTTCCCTCCAACAT+AGG | + | chr5.1:2836547-2836566 | None:intergenic | 50.0% | |
| GGCAAGTTCATGCTAGAGGA+GGG | - | chr5.1:2835767-2835786 | MS.gene21941:CDS | 50.0% | |
| TAAGGAAGAGCCACCAACGT+TGG | + | chr5.1:2835420-2835439 | None:intergenic | 50.0% | |
| TACCACCAGTGACAGTGTCA+AGG | + | chr5.1:2836516-2836535 | None:intergenic | 50.0% | |
| TATGGGGAGACCTATGTTGG+AGG | - | chr5.1:2836534-2836553 | MS.gene21941:CDS | 50.0% | |
| TCCTAGTCATCACACAGGCA+TGG | - | chr5.1:2836564-2836583 | MS.gene21941:CDS | 50.0% | |
| TGACACTGTCACTGGTGGTA+TGG | - | chr5.1:2836516-2836535 | MS.gene21941:CDS | 50.0% | |
| TGCTGAGAATGCAAGGCGAA+TGG | - | chr5.1:2834694-2834713 | MS.gene21941:intron | 50.0% | |
| TGGTATGGGGAGACCTATGT+TGG | - | chr5.1:2836531-2836550 | MS.gene21941:CDS | 50.0% | |
| TTGGCAACTTGCCTCTCCAA+TGG | + | chr5.1:2834526-2834545 | None:intergenic | 50.0% | |
| ! | ACTGGAGCATCTTCTGCCAT+TGG | - | chr5.1:2834507-2834526 | MS.gene21941:CDS | 50.0% |
| ! | AGAGCCACTCACAAGCATTG+AGG | + | chr5.1:2834440-2834459 | None:intergenic | 50.0% |
| ! | AGGCTCCTTATTTCCCCACA+AGG | - | chr5.1:2836451-2836470 | MS.gene21941:CDS | 50.0% |
| ! | CCGTTGCTTTGGTGAAGGTA+AGG | + | chr5.1:2835438-2835457 | None:intergenic | 50.0% |
| ! | GGCTCCTTATTTCCCCACAA+GGG | - | chr5.1:2836452-2836471 | MS.gene21941:CDS | 50.0% |
| TCCCTTGACACTGTCACTGG+TGG | - | chr5.1:2836511-2836530 | MS.gene21941:CDS | 55.0% | |
| ! | CACGACCGTTGCTTTGGTGA+AGG | + | chr5.1:2835443-2835462 | None:intergenic | 55.0% |
| ! | TGGTGGCACGAAGAGAGCAT+AGG | - | chr5.1:2834660-2834679 | MS.gene21941:CDS | 55.0% |
| AGGAGGGGGCTGACATGCAG+TGG | - | chr5.1:2835783-2835802 | MS.gene21941:CDS | 65.0% | |
| GGGGGCTGACATGCAGTGGA+AGG | - | chr5.1:2835787-2835806 | MS.gene21941:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 2834351 | 2836642 | 2834351 | ID=MS.gene21941 |
| chr5.1 | mRNA | 2834351 | 2836642 | 2834351 | ID=MS.gene21941.t1;Parent=MS.gene21941 |
| chr5.1 | exon | 2836445 | 2836642 | 2836445 | ID=MS.gene21941.t1.exon1;Parent=MS.gene21941.t1 |
| chr5.1 | CDS | 2836445 | 2836642 | 2836445 | ID=cds.MS.gene21941.t1;Parent=MS.gene21941.t1 |
| chr5.1 | exon | 2836184 | 2836376 | 2836184 | ID=MS.gene21941.t1.exon2;Parent=MS.gene21941.t1 |
| chr5.1 | CDS | 2836184 | 2836376 | 2836184 | ID=cds.MS.gene21941.t1;Parent=MS.gene21941.t1 |
| chr5.1 | exon | 2835727 | 2835812 | 2835727 | ID=MS.gene21941.t1.exon3;Parent=MS.gene21941.t1 |
| chr5.1 | CDS | 2835727 | 2835812 | 2835727 | ID=cds.MS.gene21941.t1;Parent=MS.gene21941.t1 |
| chr5.1 | exon | 2835472 | 2835603 | 2835472 | ID=MS.gene21941.t1.exon4;Parent=MS.gene21941.t1 |
| chr5.1 | CDS | 2835472 | 2835603 | 2835472 | ID=cds.MS.gene21941.t1;Parent=MS.gene21941.t1 |
| chr5.1 | exon | 2835173 | 2835337 | 2835173 | ID=MS.gene21941.t1.exon5;Parent=MS.gene21941.t1 |
| chr5.1 | CDS | 2835173 | 2835337 | 2835173 | ID=cds.MS.gene21941.t1;Parent=MS.gene21941.t1 |
| chr5.1 | exon | 2834351 | 2834692 | 2834351 | ID=MS.gene21941.t1.exon6;Parent=MS.gene21941.t1 |
| chr5.1 | CDS | 2834351 | 2834692 | 2834351 | ID=cds.MS.gene21941.t1;Parent=MS.gene21941.t1 |
| Gene Sequence |
| Protein sequence |
