Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22220.t1 | XP_013459616.1 | 95.9 | 241 | 10 | 0 | 1 | 241 | 1 | 241 | 1.40E-126 | 462.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22220.t1 | Q9SS37 | 56.6 | 249 | 98 | 3 | 1 | 241 | 1 | 247 | 1.4e-77 | 290.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22220.t1 | A0A072UVI7 | 95.9 | 241 | 10 | 0 | 1 | 241 | 1 | 241 | 1.0e-126 | 462.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22220 | MS.gene08330 | PPI |
| MS.gene22220 | MS.gene35007 | PPI |
| MS.gene028160 | MS.gene22220 | PPI |
| MS.gene22220 | MS.gene028158 | PPI |
| MS.gene023287 | MS.gene22220 | PPI |
| MS.gene22220 | MS.gene34943 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22220.t1 | MTR_3g449880 | 95.851 | 241 | 10 | 0 | 1 | 241 | 1 | 241 | 2.81e-162 | 449 |
| MS.gene22220.t1 | MTR_3g449880 | 94.536 | 183 | 10 | 0 | 59 | 241 | 37 | 219 | 4.71e-117 | 333 |
| MS.gene22220.t1 | MTR_5g090340 | 65.975 | 241 | 79 | 2 | 1 | 239 | 49 | 288 | 4.40e-106 | 308 |
| MS.gene22220.t1 | MTR_5g090340 | 65.975 | 241 | 79 | 2 | 1 | 239 | 46 | 285 | 5.23e-106 | 308 |
| MS.gene22220.t1 | MTR_8g099060 | 49.289 | 211 | 103 | 1 | 35 | 241 | 50 | 260 | 3.68e-70 | 216 |
| MS.gene22220.t1 | MTR_8g028450 | 47.196 | 214 | 101 | 1 | 34 | 235 | 53 | 266 | 1.81e-66 | 207 |
| MS.gene22220.t1 | MTR_1g099500 | 46.667 | 195 | 104 | 0 | 37 | 231 | 45 | 239 | 2.12e-59 | 188 |
| MS.gene22220.t1 | MTR_1g109630 | 34.653 | 202 | 122 | 3 | 43 | 240 | 10 | 205 | 4.21e-37 | 129 |
| MS.gene22220.t1 | MTR_3g062910 | 31.839 | 223 | 149 | 2 | 5 | 226 | 10 | 230 | 4.54e-33 | 120 |
| MS.gene22220.t1 | MTR_4g014700 | 34.759 | 187 | 122 | 0 | 41 | 227 | 5 | 191 | 1.88e-31 | 115 |
| MS.gene22220.t1 | MTR_1g107445 | 37.363 | 182 | 114 | 0 | 50 | 231 | 9 | 190 | 3.73e-26 | 101 |
| MS.gene22220.t1 | MTR_5g018250 | 31.638 | 177 | 121 | 0 | 55 | 231 | 29 | 205 | 3.33e-25 | 99.4 |
| MS.gene22220.t1 | MTR_6g012460 | 33.140 | 172 | 115 | 0 | 60 | 231 | 14 | 185 | 5.43e-23 | 92.8 |
| MS.gene22220.t1 | MTR_5g018080 | 34.043 | 141 | 93 | 0 | 59 | 199 | 15 | 155 | 6.21e-21 | 86.3 |
| MS.gene22220.t1 | MTR_5g018190 | 33.562 | 146 | 97 | 0 | 63 | 208 | 284 | 429 | 2.08e-20 | 89.7 |
| MS.gene22220.t1 | MTR_5g018110 | 33.803 | 142 | 94 | 0 | 62 | 203 | 344 | 485 | 1.15e-18 | 84.7 |
| MS.gene22220.t1 | MTR_5g090440 | 60.000 | 55 | 18 | 1 | 189 | 239 | 9 | 63 | 2.84e-15 | 68.6 |
| MS.gene22220.t1 | MTR_6g012460 | 35.115 | 131 | 85 | 0 | 60 | 190 | 14 | 144 | 7.16e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22220.t1 | AT3G10260 | 56.627 | 249 | 98 | 3 | 1 | 241 | 1 | 247 | 9.89e-104 | 301 |
| MS.gene22220.t1 | AT3G10260 | 56.627 | 249 | 98 | 3 | 1 | 241 | 1 | 247 | 9.89e-104 | 301 |
| MS.gene22220.t1 | AT3G10260 | 56.627 | 249 | 98 | 3 | 1 | 241 | 21 | 267 | 1.37e-103 | 301 |
| MS.gene22220.t1 | AT2G46170 | 48.756 | 201 | 103 | 0 | 31 | 231 | 40 | 240 | 1.21e-67 | 209 |
| MS.gene22220.t1 | AT1G64090 | 46.734 | 199 | 106 | 0 | 33 | 231 | 38 | 236 | 4.89e-65 | 202 |
| MS.gene22220.t1 | AT3G61560 | 46.766 | 201 | 107 | 0 | 31 | 231 | 40 | 240 | 9.22e-65 | 202 |
| MS.gene22220.t1 | AT3G61560 | 46.766 | 201 | 107 | 0 | 31 | 231 | 40 | 240 | 9.22e-65 | 202 |
| MS.gene22220.t1 | AT1G64090 | 43.256 | 215 | 106 | 1 | 33 | 231 | 38 | 252 | 5.14e-61 | 193 |
| MS.gene22220.t1 | AT4G11220 | 41.262 | 206 | 117 | 1 | 40 | 241 | 66 | 271 | 2.47e-60 | 191 |
| MS.gene22220.t1 | AT4G23630 | 43.689 | 206 | 112 | 1 | 40 | 241 | 70 | 275 | 1.54e-59 | 189 |
| MS.gene22220.t1 | AT4G23630 | 43.689 | 206 | 112 | 1 | 40 | 241 | 70 | 275 | 1.54e-59 | 189 |
| MS.gene22220.t1 | AT5G41600 | 44.560 | 193 | 107 | 0 | 40 | 232 | 49 | 241 | 7.00e-58 | 184 |
| MS.gene22220.t1 | AT3G61560 | 49.057 | 159 | 81 | 0 | 31 | 189 | 40 | 198 | 1.44e-51 | 166 |
| MS.gene22220.t1 | AT3G18260 | 38.049 | 205 | 123 | 1 | 39 | 239 | 19 | 223 | 8.51e-48 | 157 |
| MS.gene22220.t1 | AT4G01230 | 39.303 | 201 | 119 | 1 | 31 | 231 | 42 | 239 | 2.73e-47 | 157 |
| MS.gene22220.t1 | AT4G01230 | 38.308 | 201 | 119 | 2 | 31 | 231 | 42 | 237 | 6.26e-44 | 148 |
| MS.gene22220.t1 | AT2G46170 | 48.905 | 137 | 70 | 0 | 31 | 167 | 40 | 176 | 3.06e-43 | 145 |
| MS.gene22220.t1 | AT3G10915 | 30.198 | 202 | 141 | 0 | 30 | 231 | 12 | 213 | 9.65e-34 | 121 |
| MS.gene22220.t1 | AT3G10915 | 31.282 | 195 | 134 | 0 | 37 | 231 | 44 | 238 | 3.38e-33 | 120 |
| MS.gene22220.t1 | AT3G10915 | 30.049 | 203 | 141 | 1 | 30 | 231 | 12 | 214 | 5.00e-32 | 117 |
| MS.gene22220.t1 | AT2G15280 | 31.500 | 200 | 132 | 1 | 47 | 241 | 2 | 201 | 5.28e-32 | 116 |
| MS.gene22220.t1 | AT3G19460 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 2.64e-29 | 109 |
| MS.gene22220.t1 | AT3G19460 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 2.64e-29 | 109 |
| MS.gene22220.t1 | AT3G19460 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 2.64e-29 | 109 |
| MS.gene22220.t1 | AT3G10915 | 27.083 | 240 | 148 | 3 | 15 | 231 | 1 | 236 | 1.27e-26 | 103 |
| MS.gene22220.t1 | AT1G68230 | 36.025 | 161 | 97 | 2 | 50 | 208 | 22 | 178 | 5.75e-26 | 101 |
| MS.gene22220.t1 | AT3G10915 | 28.090 | 178 | 128 | 0 | 54 | 231 | 4 | 181 | 1.25e-24 | 97.1 |
| MS.gene22220.t1 | AT3G10915 | 28.324 | 173 | 124 | 0 | 59 | 231 | 8 | 180 | 2.47e-24 | 96.3 |
| MS.gene22220.t1 | AT3G54120 | 31.250 | 192 | 132 | 0 | 36 | 227 | 1 | 192 | 6.31e-23 | 92.8 |
| MS.gene22220.t1 | AT3G19460 | 29.817 | 218 | 119 | 3 | 51 | 234 | 14 | 231 | 1.95e-22 | 92.4 |
| MS.gene22220.t1 | AT3G19460 | 29.817 | 218 | 119 | 3 | 51 | 234 | 14 | 231 | 1.95e-22 | 92.4 |
| MS.gene22220.t1 | AT3G19460 | 29.187 | 209 | 114 | 3 | 60 | 234 | 7 | 215 | 3.46e-19 | 83.2 |
| MS.gene22220.t1 | AT3G19460 | 29.187 | 209 | 114 | 3 | 60 | 234 | 7 | 215 | 3.46e-19 | 83.2 |
| MS.gene22220.t1 | AT1G68230 | 34.965 | 143 | 87 | 2 | 50 | 190 | 22 | 160 | 9.83e-19 | 80.9 |
| MS.gene22220.t1 | AT3G10915 | 28.571 | 154 | 106 | 1 | 15 | 168 | 1 | 150 | 4.27e-17 | 76.3 |
| MS.gene22220.t1 | AT2G23640 | 24.294 | 177 | 134 | 0 | 61 | 237 | 18 | 194 | 1.47e-14 | 70.5 |
| MS.gene22220.t1 | AT2G15280 | 26.724 | 116 | 85 | 0 | 47 | 162 | 2 | 117 | 8.91e-12 | 62.0 |
Find 39 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTGGTGCAACAATTATA+TGG | 0.199383 | 3.4:-40126456 | MS.gene22220:CDS |
| AACTTTGTGCTCAAGGTCTT+TGG | 0.269918 | 3.4:-40123914 | MS.gene22220:CDS |
| GCCTGCTTGCTCAATTTCTA+TGG | 0.286324 | 3.4:-40126372 | MS.gene22220:CDS |
| ATGTTCACAAATAACTCTTC+TGG | 0.294981 | 3.4:+40126182 | None:intergenic |
| ATGCTTCTAGCATGTTTAAC+AGG | 0.343523 | 3.4:-40126345 | MS.gene22220:intron |
| CAACCTTGTCGACACATTAT+CGG | 0.356122 | 3.4:-40126755 | MS.gene22220:CDS |
| TCCAGGTTGTCGTAAGTTTG+TGG | 0.393138 | 3.4:-40124851 | MS.gene22220:intron |
| AACTGGTGCAACAATTATAT+GGG | 0.403050 | 3.4:-40126455 | MS.gene22220:CDS |
| CCAGGTTGTCGTAAGTTTGT+GGG | 0.407558 | 3.4:-40124850 | MS.gene22220:intron |
| TGTGGGCTGGTTCAGTGATC+GGG | 0.419844 | 3.4:-40124833 | MS.gene22220:CDS |
| TGATTTGTCTTCCTCAAAGA+AGG | 0.421270 | 3.4:+40126714 | None:intergenic |
| TGTTCACAAATAACTCTTCT+GGG | 0.437588 | 3.4:+40126183 | None:intergenic |
| TTGTGGGCTGGTTCAGTGAT+CGG | 0.439695 | 3.4:-40124834 | MS.gene22220:CDS |
| TTATATGGGTGCTATTTGAA+TGG | 0.444221 | 3.4:-40126441 | MS.gene22220:CDS |
| CTTCAAGATGTTTCTTGTGA+AGG | 0.447481 | 3.4:-40126116 | MS.gene22220:CDS |
| TCATACCTTTCATAGAGAAC+TGG | 0.464929 | 3.4:+40123950 | None:intergenic |
| AACTATAGAAAGCTGGATGC+TGG | 0.477192 | 3.4:-40123878 | MS.gene22220:CDS |
| TCCGAGATCAACAGACTGTT+CGG | 0.480198 | 3.4:-40126679 | MS.gene22220:CDS |
| CTGGTTCAGTGATCGGGAGT+TGG | 0.488082 | 3.4:-40124827 | MS.gene22220:CDS |
| ACAAAATAACTATAGAAAGC+TGG | 0.495354 | 3.4:-40123885 | MS.gene22220:CDS |
| TCCGAACAGTCTGTTGATCT+CGG | 0.515369 | 3.4:+40126678 | None:intergenic |
| GTTGTCGTAAGTTTGTGGGC+TGG | 0.521608 | 3.4:-40124846 | MS.gene22220:CDS |
| ACCATAGAAATTGAGCAAGC+AGG | 0.524128 | 3.4:+40126371 | None:intergenic |
| CACTTCCAGTTCTCTATGAA+AGG | 0.525840 | 3.4:-40123955 | MS.gene22220:CDS |
| CCTCCTAAAAGATGGTGTAC+AGG | 0.528013 | 3.4:+40126646 | None:intergenic |
| AGTTGACAACTTTGTGCTCA+AGG | 0.544627 | 3.4:-40123921 | MS.gene22220:CDS |
| GTGAACATTGCAACTGTAGT+CGG | 0.551099 | 3.4:-40126167 | MS.gene22220:CDS |
| ATGAGGTTAACCGTGGGTTG+AGG | 0.554577 | 3.4:-40126142 | MS.gene22220:CDS |
| AGTTCTCTATGAAAGGTATG+AGG | 0.559341 | 3.4:-40123948 | MS.gene22220:CDS |
| TGTCGACAAGGTTGTGAAGG+AGG | 0.569674 | 3.4:+40126764 | None:intergenic |
| CTGGATGCTGGTGTGCTCAA+AGG | 0.572299 | 3.4:-40123866 | MS.gene22220:CDS |
| TGCAACTGTAGTCGGAAATG+AGG | 0.572557 | 3.4:-40126159 | MS.gene22220:CDS |
| ATGTGTCGACAAGGTTGTGA+AGG | 0.609913 | 3.4:+40126761 | None:intergenic |
| GCAACACGAGGTACTTGAGA+TGG | 0.628239 | 3.4:+40126209 | None:intergenic |
| GTCGGAAATGAGGTTAACCG+TGG | 0.647375 | 3.4:-40126149 | MS.gene22220:CDS |
| CTTGAAGAAACCTCAACCCA+CGG | 0.663353 | 3.4:+40126132 | None:intergenic |
| TCGGAAATGAGGTTAACCGT+GGG | 0.686665 | 3.4:-40126148 | MS.gene22220:CDS |
| TGTCCGATAATGTGTCGACA+AGG | 0.693508 | 3.4:+40126752 | None:intergenic |
| TCTTCTGGGACAGCAACACG+AGG | 0.706178 | 3.4:+40126197 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTTTATTTTATCTTT+TGG | - | chr3.4:40124086-40124105 | MS.gene22220:intron | 10.0% |
| !! | TTCTAAATTACACATATAAT+TGG | - | chr3.4:40125185-40125204 | MS.gene22220:intron | 15.0% |
| !!! | AATCAATTTTTTTAATGATC+TGG | + | chr3.4:40125151-40125170 | None:intergenic | 15.0% |
| !!! | ATTTAATTTATATACATCGT+CGG | - | chr3.4:40125088-40125107 | MS.gene22220:intron | 15.0% |
| !!! | CTTATTTTCATTTATTTACT+TGG | - | chr3.4:40124568-40124587 | MS.gene22220:intron | 15.0% |
| !!! | GTAGAAATAAATATTTTCTA+AGG | + | chr3.4:40125688-40125707 | None:intergenic | 15.0% |
| !!! | TTTCACTTTTAATTACAAAA+CGG | + | chr3.4:40126337-40126356 | None:intergenic | 15.0% |
| !! | AATTACATGTGCAAATATTT+GGG | + | chr3.4:40125921-40125940 | None:intergenic | 20.0% |
| !! | TAATTACATGTGCAAATATT+TGG | + | chr3.4:40125922-40125941 | None:intergenic | 20.0% |
| !! | TTCAACATTCTATTTGTATT+GGG | + | chr3.4:40125294-40125313 | None:intergenic | 20.0% |
| !! | TTCTTAAAAAGACATGATTT+CGG | - | chr3.4:40125971-40125990 | MS.gene22220:intron | 20.0% |
| !! | TTGTAATTAAAAGTGAAAAC+TGG | - | chr3.4:40126339-40126358 | MS.gene22220:intron | 20.0% |
| !! | TTTCAACATTCTATTTGTAT+TGG | + | chr3.4:40125295-40125314 | None:intergenic | 20.0% |
| !!! | AAACTTTTTTTCTTCAAATG+TGG | - | chr3.4:40126016-40126035 | MS.gene22220:intron | 20.0% |
| !!! | CAACTAATCTCTTTTTATAT+GGG | + | chr3.4:40125368-40125387 | None:intergenic | 20.0% |
| !!! | TCATCTACAAATATTTTACA+AGG | + | chr3.4:40126275-40126294 | None:intergenic | 20.0% |
| !!! | TCTTTTATGCTTTAAAATGT+GGG | + | chr3.4:40124973-40124992 | None:intergenic | 20.0% |
| !!! | TTCTCTTGTTTTAATTTATG+TGG | - | chr3.4:40124335-40124354 | MS.gene22220:intron | 20.0% |
| !!! | TTCTTTTATGCTTTAAAATG+TGG | + | chr3.4:40124974-40124993 | None:intergenic | 20.0% |
| ! | AAAAAAATCATCCTTCTTTG+AGG | - | chr3.4:40123903-40123922 | MS.gene22220:CDS | 25.0% |
| ! | ACAAAATAACTATAGAAAGC+TGG | - | chr3.4:40126743-40126762 | MS.gene22220:CDS | 25.0% |
| ! | AGATGAAATACTATGAAAAC+AGG | - | chr3.4:40126289-40126308 | MS.gene22220:intron | 25.0% |
| ! | ATAATGCACATGTTTGATAA+AGG | + | chr3.4:40124621-40124640 | None:intergenic | 25.0% |
| ! | ATTACATGTGCAAATATTTG+GGG | + | chr3.4:40125920-40125939 | None:intergenic | 25.0% |
| ! | ATTTGCACATGTAATTAAGA+GGG | - | chr3.4:40125925-40125944 | MS.gene22220:intron | 25.0% |
| ! | CATGTTATTGATATTTGTCA+TGG | - | chr3.4:40124711-40124730 | MS.gene22220:intron | 25.0% |
| ! | CCATATAAAAAGAGATTAGT+TGG | - | chr3.4:40125366-40125385 | MS.gene22220:intron | 25.0% |
| ! | TAGCTGAAGCATAAAAATAT+GGG | + | chr3.4:40126395-40126414 | None:intergenic | 25.0% |
| ! | TATTTGCACATGTAATTAAG+AGG | - | chr3.4:40125924-40125943 | MS.gene22220:intron | 25.0% |
| ! | TCTAAATTATGAACAAATGC+TGG | - | chr3.4:40126573-40126592 | MS.gene22220:intron | 25.0% |
| ! | TGCTATAATATTAAGTGTCA+AGG | - | chr3.4:40125522-40125541 | MS.gene22220:intron | 25.0% |
| ! | TTGACACTTAATATTATAGC+AGG | + | chr3.4:40125523-40125542 | None:intergenic | 25.0% |
| !! | AATCTCTTTTTATATGGGAT+CGG | + | chr3.4:40125363-40125382 | None:intergenic | 25.0% |
| !! | CCAACTAATCTCTTTTTATA+TGG | + | chr3.4:40125369-40125388 | None:intergenic | 25.0% |
| !! | CTATAGTTCAACATATTTTC+AGG | + | chr3.4:40126437-40126456 | None:intergenic | 25.0% |
| !! | GTCAAAAATGATATGTTTTG+TGG | - | chr3.4:40125560-40125579 | MS.gene22220:intron | 25.0% |
| !!! | ATGTCTTTTTAAGAAATGTG+GGG | + | chr3.4:40125966-40125985 | None:intergenic | 25.0% |
| !!! | ATTTCTGCTAGTTTTTTAAC+TGG | - | chr3.4:40124156-40124175 | MS.gene22220:intron | 25.0% |
| !!! | CATGTCTTTTTAAGAAATGT+GGG | + | chr3.4:40125967-40125986 | None:intergenic | 25.0% |
| !!! | CTTTTATGCTTTAAAATGTG+GGG | + | chr3.4:40124972-40124991 | None:intergenic | 25.0% |
| !!! | TCAAAGAAGGATGATTTTTT+TGG | + | chr3.4:40123904-40123923 | None:intergenic | 25.0% |
| !!! | TCATGTCTTTTTAAGAAATG+TGG | + | chr3.4:40125968-40125987 | None:intergenic | 25.0% |
| !!! | TTTGAAATACTTTTGCAAGT+GGG | - | chr3.4:40126042-40126061 | MS.gene22220:intron | 25.0% |
| !!! | TTTTGAAATACTTTTGCAAG+TGG | - | chr3.4:40126041-40126060 | MS.gene22220:intron | 25.0% |
| !!! | TTTTTGACTGTCATCTATAT+TGG | - | chr3.4:40125830-40125849 | MS.gene22220:intron | 25.0% |
| AACTGGTGCAACAATTATAT+GGG | - | chr3.4:40124173-40124192 | MS.gene22220:intron | 30.0% | |
| AAGGATATTGAAAGATAGCT+GGG | + | chr3.4:40124947-40124966 | None:intergenic | 30.0% | |
| ATCATAACATCATACTGCAT+AGG | - | chr3.4:40124828-40124847 | MS.gene22220:CDS | 30.0% | |
| ATGTTCACAAATAACTCTTC+TGG | + | chr3.4:40124449-40124468 | None:intergenic | 30.0% | |
| CATTAATAAAGTGTGTGTCT+AGG | - | chr3.4:40125051-40125070 | MS.gene22220:intron | 30.0% | |
| CCATAACAGTGAAAAAAATG+AGG | + | chr3.4:40125591-40125610 | None:intergenic | 30.0% | |
| CTACCATATCAACTAAGAAA+AGG | + | chr3.4:40124752-40124771 | None:intergenic | 30.0% | |
| CTAGCTGAAGCATAAAAATA+TGG | + | chr3.4:40126396-40126415 | None:intergenic | 30.0% | |
| GAAGTTACTTAAGAGTCAAT+TGG | - | chr3.4:40124905-40124924 | MS.gene22220:intron | 30.0% | |
| GATTAAAAAAACAAGCACGA+AGG | + | chr3.4:40124644-40124663 | None:intergenic | 30.0% | |
| GTGTCTAGGTTATTTACTAA+GGG | - | chr3.4:40125065-40125084 | MS.gene22220:intron | 30.0% | |
| GTTGAAAACTTCACAAGAAA+AGG | + | chr3.4:40124671-40124690 | None:intergenic | 30.0% | |
| TAACTGGTGCAACAATTATA+TGG | - | chr3.4:40124172-40124191 | MS.gene22220:intron | 30.0% | |
| TATATACTTGAGCTTACCTA+GGG | - | chr3.4:40126170-40126189 | MS.gene22220:CDS | 30.0% | |
| TCAAAAGATGAAAAGAAAGC+CGG | + | chr3.4:40125861-40125880 | None:intergenic | 30.0% | |
| TGTGTCTAGGTTATTTACTA+AGG | - | chr3.4:40125064-40125083 | MS.gene22220:intron | 30.0% | |
| TGTTCACAAATAACTCTTCT+GGG | + | chr3.4:40124448-40124467 | None:intergenic | 30.0% | |
| TGTTTGATAAAGGTTAACTC+TGG | + | chr3.4:40124611-40124630 | None:intergenic | 30.0% | |
| TTAATTCTTCATGTGTGTGA+TGG | - | chr3.4:40125325-40125344 | MS.gene22220:intron | 30.0% | |
| TTATCAGAAAGAACTAAACC+AGG | + | chr3.4:40126526-40126545 | None:intergenic | 30.0% | |
| ! | ACTGGTCTGCAAAAAATATA+TGG | - | chr3.4:40126216-40126235 | MS.gene22220:CDS | 30.0% |
| ! | ATATGCTCTAGTTCATGAAA+TGG | - | chr3.4:40126114-40126133 | MS.gene22220:CDS | 30.0% |
| ! | GAAACAAATGTTTTGTCGAA+AGG | - | chr3.4:40126633-40126652 | MS.gene22220:intron | 30.0% |
| ! | GCTTTCTTTTCATCTTTTGA+TGG | - | chr3.4:40125861-40125880 | MS.gene22220:intron | 30.0% |
| ! | TCAGGAGAAAAGTTTTCATA+GGG | + | chr3.4:40126419-40126438 | None:intergenic | 30.0% |
| ! | TTCAGGAGAAAAGTTTTCAT+AGG | + | chr3.4:40126420-40126439 | None:intergenic | 30.0% |
| ! | TTCTCTACTATGTTTTGTCT+TGG | - | chr3.4:40124227-40124246 | MS.gene22220:intron | 30.0% |
| ! | TTTTCTGCTGTGATTTTATC+AGG | + | chr3.4:40123844-40123863 | None:intergenic | 30.0% |
| !! | CTTTTCTTAGTTGATATGGT+AGG | - | chr3.4:40124750-40124769 | MS.gene22220:intron | 30.0% |
| !! | TGACCTTTTCTTAGTTGATA+TGG | - | chr3.4:40124746-40124765 | MS.gene22220:intron | 30.0% |
| !! | TGTCTTTTTAAGAAATGTGG+GGG | + | chr3.4:40125965-40125984 | None:intergenic | 30.0% |
| !! | TTATATGGGTGCTATTTGAA+TGG | - | chr3.4:40124187-40124206 | MS.gene22220:intron | 30.0% |
| !!! | CCTCATTTTTTTCACTGTTA+TGG | - | chr3.4:40125588-40125607 | MS.gene22220:intron | 30.0% |
| AAAAACTGGCATAAGAAAGC+TGG | + | chr3.4:40126242-40126261 | None:intergenic | 35.0% | |
| AAGGACACAGATTGAAAAAC+TGG | + | chr3.4:40126256-40126275 | None:intergenic | 35.0% | |
| ATAGTAAGATGCAGAGATGA+AGG | - | chr3.4:40126453-40126472 | MS.gene22220:CDS | 35.0% | |
| ATATGGGTCTCTTTACTTTG+AGG | + | chr3.4:40126379-40126398 | None:intergenic | 35.0% | |
| ATGCTTCTAGCATGTTTAAC+AGG | - | chr3.4:40124283-40124302 | MS.gene22220:intron | 35.0% | |
| CAAGGATATTGAAAGATAGC+TGG | + | chr3.4:40124948-40124967 | None:intergenic | 35.0% | |
| CATAAAAGAAGTTGAAGCCA+TGG | - | chr3.4:40124984-40125003 | MS.gene22220:intron | 35.0% | |
| CTTCAAGATGTTTCTTGTGA+AGG | - | chr3.4:40124512-40124531 | MS.gene22220:intron | 35.0% | |
| GGATGTCAGCAGAATAAATA+TGG | + | chr3.4:40124860-40124879 | None:intergenic | 35.0% | |
| GGTTAACTCTGGATGATAAA+TGG | + | chr3.4:40124600-40124619 | None:intergenic | 35.0% | |
| GTATATACTTGAGCTTACCT+AGG | - | chr3.4:40126169-40126188 | MS.gene22220:CDS | 35.0% | |
| TACTCCATTTACATACACCA+TGG | + | chr3.4:40125004-40125023 | None:intergenic | 35.0% | |
| TCATACCTTTCATAGAGAAC+TGG | + | chr3.4:40126681-40126700 | None:intergenic | 35.0% | |
| TTTAGGAGGTGGAAAATGTA+CGG | - | chr3.4:40123996-40124015 | MS.gene22220:intron | 35.0% | |
| ! | AAACCTGTACACCATCTTTT+AGG | - | chr3.4:40123979-40123998 | MS.gene22220:intron | 35.0% |
| ! | AGTTCTCTATGAAAGGTATG+AGG | - | chr3.4:40126680-40126699 | MS.gene22220:CDS | 35.0% |
| ! | ATTTTCCACCTCCTAAAAGA+TGG | + | chr3.4:40123993-40124012 | None:intergenic | 35.0% |
| ! | CATTATTGTGCAAAGTGTCA+AGG | - | chr3.4:40125624-40125643 | MS.gene22220:intron | 35.0% |
| ! | TGATTTGTCTTCCTCAAAGA+AGG | + | chr3.4:40123917-40123936 | None:intergenic | 35.0% |
| !! | CTATGTTTTGTCTTGGTTCT+TGG | - | chr3.4:40124234-40124253 | MS.gene22220:intron | 35.0% |
| !! | TTTTTAAGAAATGTGGGGGT+GGG | + | chr3.4:40125961-40125980 | None:intergenic | 35.0% |
| AACTATAGAAAGCTGGATGC+TGG | - | chr3.4:40126750-40126769 | MS.gene22220:CDS | 40.0% | |
| AACTTTGTGCTCAAGGTCTT+TGG | - | chr3.4:40126714-40126733 | MS.gene22220:CDS | 40.0% | |
| ACCATAGAAATTGAGCAAGC+AGG | + | chr3.4:40124260-40124279 | None:intergenic | 40.0% | |
| AGTTGACAACTTTGTGCTCA+AGG | - | chr3.4:40126707-40126726 | MS.gene22220:CDS | 40.0% | |
| ATACTGCTAGTGCTAGGTAT+GGG | + | chr3.4:40126096-40126115 | None:intergenic | 40.0% | |
| ATGAGGTCTGCTAATACACT+AGG | - | chr3.4:40125496-40125515 | MS.gene22220:intron | 40.0% | |
| ATGGGGAAGCAACCTTAATA+GGG | + | chr3.4:40126078-40126097 | None:intergenic | 40.0% | |
| CAACCTTGTCGACACATTAT+CGG | - | chr3.4:40123873-40123892 | MS.gene22220:CDS | 40.0% | |
| CACTTCCAGTTCTCTATGAA+AGG | - | chr3.4:40126673-40126692 | MS.gene22220:CDS | 40.0% | |
| CAGGAAGCAGATTGAAAACA+AGG | - | chr3.4:40126308-40126327 | MS.gene22220:intron | 40.0% | |
| GAAGCCATGGTGTATGTAAA+TGG | - | chr3.4:40124997-40125016 | MS.gene22220:intron | 40.0% | |
| GGAAGATTTCCTCCCTATTA+AGG | - | chr3.4:40126063-40126082 | MS.gene22220:intron | 40.0% | |
| GTCATCTATATTGGTGAGTC+CGG | - | chr3.4:40125839-40125858 | MS.gene22220:intron | 40.0% | |
| GTGAACATTGCAACTGTAGT+CGG | - | chr3.4:40124461-40124480 | MS.gene22220:intron | 40.0% | |
| TATACTGCTAGTGCTAGGTA+TGG | + | chr3.4:40126097-40126116 | None:intergenic | 40.0% | |
| TATGGGGAAGCAACCTTAAT+AGG | + | chr3.4:40126079-40126098 | None:intergenic | 40.0% | |
| TCGCAAAGATGATTCTGTGA+TGG | + | chr3.4:40124881-40124900 | None:intergenic | 40.0% | |
| TGAAAGTTGAAACACTCTCC+AGG | - | chr3.4:40125760-40125779 | MS.gene22220:intron | 40.0% | |
| !! | CTTTTTAAGAAATGTGGGGG+TGG | + | chr3.4:40125962-40125981 | None:intergenic | 40.0% |
| !! | GGCTTTAAATGCTATAGCTG+CGG | - | chr3.4:40124107-40124126 | MS.gene22220:intron | 40.0% |
| !! | TGCTTTAAAATGTGGGGACA+AGG | + | chr3.4:40124966-40124985 | None:intergenic | 40.0% |
| ACAAGTCGATAACTCTCAGG+GGG | + | chr3.4:40126145-40126164 | None:intergenic | 45.0% | |
| ACCACAAGTCGATAACTCTC+AGG | + | chr3.4:40126148-40126167 | None:intergenic | 45.0% | |
| CACAAGTCGATAACTCTCAG+GGG | + | chr3.4:40126146-40126165 | None:intergenic | 45.0% | |
| CCACAAGTCGATAACTCTCA+GGG | + | chr3.4:40126147-40126166 | None:intergenic | 45.0% | |
| CCAGGTTGTCGTAAGTTTGT+GGG | - | chr3.4:40125778-40125797 | MS.gene22220:intron | 45.0% | |
| CCTCCTAAAAGATGGTGTAC+AGG | + | chr3.4:40123985-40124004 | None:intergenic | 45.0% | |
| CTTGAAGAAACCTCAACCCA+CGG | + | chr3.4:40124499-40124518 | None:intergenic | 45.0% | |
| GAGCATATACTGCTAGTGCT+AGG | + | chr3.4:40126102-40126121 | None:intergenic | 45.0% | |
| GCCTGCTTGCTCAATTTCTA+TGG | - | chr3.4:40124256-40124275 | MS.gene22220:intron | 45.0% | |
| TACTGCTAGTGCTAGGTATG+GGG | + | chr3.4:40126095-40126114 | None:intergenic | 45.0% | |
| TCCAGGTTGTCGTAAGTTTG+TGG | - | chr3.4:40125777-40125796 | MS.gene22220:intron | 45.0% | |
| TCCGAACAGTCTGTTGATCT+CGG | + | chr3.4:40123953-40123972 | None:intergenic | 45.0% | |
| TCCGAGATCAACAGACTGTT+CGG | - | chr3.4:40123949-40123968 | MS.gene22220:CDS | 45.0% | |
| TCGGAAATGAGGTTAACCGT+GGG | - | chr3.4:40124480-40124499 | MS.gene22220:intron | 45.0% | |
| TCTATGCCTCCACATACGTT+GGG | + | chr3.4:40125446-40125465 | None:intergenic | 45.0% | |
| TGCAACTGTAGTCGGAAATG+AGG | - | chr3.4:40124469-40124488 | MS.gene22220:intron | 45.0% | |
| TTACCTAGGGCCCCAAAAAA+GGG | - | chr3.4:40126183-40126202 | MS.gene22220:CDS | 45.0% | |
| ! | ATGTGTCGACAAGGTTGTGA+AGG | + | chr3.4:40123870-40123889 | None:intergenic | 45.0% |
| ! | CCTGTACACCATCTTTTAGG+AGG | - | chr3.4:40123982-40124001 | MS.gene22220:intron | 45.0% |
| ! | TAGCTGCGGATGTTTTGCTA+TGG | - | chr3.4:40124121-40124140 | MS.gene22220:intron | 45.0% |
| ! | TGCGCACAGTATTTTGTCGT+AGG | - | chr3.4:40124789-40124808 | MS.gene22220:intron | 45.0% |
| ! | TGTCCGATAATGTGTCGACA+AGG | + | chr3.4:40123879-40123898 | None:intergenic | 45.0% |
| !! | GTACACCATCTTTTAGGAGG+TGG | - | chr3.4:40123985-40124004 | MS.gene22220:intron | 45.0% |
| ACTAAATCTCACGAGCCAGC+TGG | - | chr3.4:40125415-40125434 | MS.gene22220:intron | 50.0% | |
| CCAGGCGTGTCTTTGTGAAT+AGG | + | chr3.4:40126508-40126527 | None:intergenic | 50.0% | |
| CCCACAAACTTACGACAACC+TGG | + | chr3.4:40125781-40125800 | None:intergenic | 50.0% | |
| CCTATTCACAAAGACACGCC+TGG | - | chr3.4:40126505-40126524 | MS.gene22220:CDS | 50.0% | |
| CTAAATCTCACGAGCCAGCT+GGG | - | chr3.4:40125416-40125435 | MS.gene22220:intron | 50.0% | |
| CTCTATGCCTCCACATACGT+TGG | + | chr3.4:40125447-40125466 | None:intergenic | 50.0% | |
| CTTACCTAGGGCCCCAAAAA+AGG | - | chr3.4:40126182-40126201 | MS.gene22220:CDS | 50.0% | |
| GGGAAGCAACCTTAATAGGG+AGG | + | chr3.4:40126075-40126094 | None:intergenic | 50.0% | |
| GTCGGAAATGAGGTTAACCG+TGG | - | chr3.4:40124479-40124498 | MS.gene22220:intron | 50.0% | |
| GTTGTCGTAAGTTTGTGGGC+TGG | - | chr3.4:40125782-40125801 | MS.gene22220:intron | 50.0% | |
| TGTCGACAAGGTTGTGAAGG+AGG | + | chr3.4:40123867-40123886 | None:intergenic | 50.0% | |
| TGTTGACCTCTGTTCGGATG+AGG | - | chr3.4:40125479-40125498 | MS.gene22220:intron | 50.0% | |
| ! | ATGAGGTTAACCGTGGGTTG+AGG | - | chr3.4:40124486-40124505 | MS.gene22220:intron | 50.0% |
| ! | GCAACACGAGGTACTTGAGA+TGG | + | chr3.4:40124422-40124441 | None:intergenic | 50.0% |
| ! | TTTTTGCAGACCAGTGCTCG+TGG | + | chr3.4:40126211-40126230 | None:intergenic | 50.0% |
| !! | CCCTGAGAGTTATCGACTTG+TGG | - | chr3.4:40126144-40126163 | MS.gene22220:CDS | 50.0% |
| !! | CTGCGGATGTTTTGCTATGG+AGG | - | chr3.4:40124124-40124143 | MS.gene22220:intron | 50.0% |
| !! | TTGTGGGCTGGTTCAGTGAT+CGG | - | chr3.4:40125794-40125813 | MS.gene22220:intron | 50.0% |
| !!! | TGCTCGTGGCTCCCTTTTTT+GGG | + | chr3.4:40126197-40126216 | None:intergenic | 50.0% |
| AAAAAGGGAGCCACGAGCAC+TGG | - | chr3.4:40126198-40126217 | MS.gene22220:CDS | 55.0% | |
| AGAGGTCAACACACCGGAGT+TGG | + | chr3.4:40125470-40125489 | None:intergenic | 55.0% | |
| AGCAGACCTCATCCGAACAG+AGG | + | chr3.4:40125488-40125507 | None:intergenic | 55.0% | |
| CCGAACAGAGGTCAACACAC+CGG | + | chr3.4:40125476-40125495 | None:intergenic | 55.0% | |
| CTGGATGCTGGTGTGCTCAA+AGG | - | chr3.4:40126762-40126781 | MS.gene22220:CDS | 55.0% | |
| CTGGTTCAGTGATCGGGAGT+TGG | - | chr3.4:40125801-40125820 | MS.gene22220:intron | 55.0% | |
| ! | CCGGTGTGTTGACCTCTGTT+CGG | - | chr3.4:40125473-40125492 | MS.gene22220:intron | 55.0% |
| ! | TGGAGGCATAGAGCCAACTC+CGG | - | chr3.4:40125454-40125473 | MS.gene22220:intron | 55.0% |
| !! | TCTTCTGGGACAGCAACACG+AGG | + | chr3.4:40124434-40124453 | None:intergenic | 55.0% |
| !! | TGTGGGCTGGTTCAGTGATC+GGG | - | chr3.4:40125795-40125814 | MS.gene22220:intron | 55.0% |
| !!! | GCTCGTGGCTCCCTTTTTTG+GGG | + | chr3.4:40126196-40126215 | None:intergenic | 55.0% |
| !!! | GTGCTCGTGGCTCCCTTTTT+TGG | + | chr3.4:40126198-40126217 | None:intergenic | 55.0% |
| !!! | GCTCCCTTTTTTGGGGCCCT+AGG | + | chr3.4:40126189-40126208 | None:intergenic | 60.0% |
| ATACGTTGGGCCAGCCCAGC+TGG | + | chr3.4:40125433-40125452 | None:intergenic | 65.0% | |
| ATCTCACGAGCCAGCTGGGC+TGG | - | chr3.4:40125420-40125439 | MS.gene22220:intron | 65.0% | |
| ! | GGCTGGCCCAACGTATGTGG+AGG | - | chr3.4:40125437-40125456 | MS.gene22220:intron | 65.0% |
| !! | CTGGGCTGGCCCAACGTATG+TGG | - | chr3.4:40125434-40125453 | MS.gene22220:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 40123838 | 40126812 | 40123838 | ID=MS.gene22220 |
| chr3.4 | mRNA | 40123838 | 40126812 | 40123838 | ID=MS.gene22220.t1;Parent=MS.gene22220 |
| chr3.4 | exon | 40126638 | 40126812 | 40126638 | ID=MS.gene22220.t1.exon1;Parent=MS.gene22220.t1 |
| chr3.4 | CDS | 40126638 | 40126812 | 40126638 | ID=cds.MS.gene22220.t1;Parent=MS.gene22220.t1 |
| chr3.4 | exon | 40126346 | 40126526 | 40126346 | ID=MS.gene22220.t1.exon2;Parent=MS.gene22220.t1 |
| chr3.4 | CDS | 40126346 | 40126526 | 40126346 | ID=cds.MS.gene22220.t1;Parent=MS.gene22220.t1 |
| chr3.4 | exon | 40126094 | 40126235 | 40126094 | ID=MS.gene22220.t1.exon3;Parent=MS.gene22220.t1 |
| chr3.4 | CDS | 40126094 | 40126235 | 40126094 | ID=cds.MS.gene22220.t1;Parent=MS.gene22220.t1 |
| chr3.4 | exon | 40124799 | 40124868 | 40124799 | ID=MS.gene22220.t1.exon4;Parent=MS.gene22220.t1 |
| chr3.4 | CDS | 40124799 | 40124868 | 40124799 | ID=cds.MS.gene22220.t1;Parent=MS.gene22220.t1 |
| chr3.4 | exon | 40123838 | 40123995 | 40123838 | ID=MS.gene22220.t1.exon5;Parent=MS.gene22220.t1 |
| chr3.4 | CDS | 40123838 | 40123995 | 40123838 | ID=cds.MS.gene22220.t1;Parent=MS.gene22220.t1 |
| Gene Sequence |
| Protein sequence |
