Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22280.t1 | XP_003610951.1 | 99.2 | 371 | 3 | 0 | 1 | 371 | 1 | 371 | 5.90E-212 | 746.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22280.t1 | Q9T0G0 | 67.7 | 350 | 105 | 4 | 1 | 348 | 2 | 345 | 1.9e-134 | 480.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22280.t1 | G7K984 | 99.2 | 371 | 3 | 0 | 1 | 371 | 1 | 371 | 4.3e-212 | 746.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000539 | MS.gene22280 | PPI |
| MS.gene22280 | MS.gene030460 | PPI |
| MS.gene063266 | MS.gene22280 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22280.t1 | MTR_5g008850 | 99.191 | 371 | 3 | 0 | 1 | 371 | 1 | 371 | 0.0 | 768 |
| MS.gene22280.t1 | MTR_8g096620 | 43.887 | 319 | 162 | 6 | 1 | 311 | 1 | 310 | 1.97e-79 | 248 |
| MS.gene22280.t1 | MTR_8g096580 | 40.000 | 310 | 171 | 4 | 1 | 309 | 1 | 296 | 3.09e-73 | 231 |
| MS.gene22280.t1 | MTR_8g096610 | 31.776 | 214 | 111 | 9 | 103 | 309 | 31 | 216 | 7.37e-16 | 76.6 |
| MS.gene22280.t1 | MTR_1g082760 | 25.210 | 238 | 161 | 6 | 38 | 267 | 33 | 261 | 1.52e-12 | 67.8 |
| MS.gene22280.t1 | MTR_7g113650 | 23.137 | 255 | 179 | 6 | 38 | 284 | 33 | 278 | 1.28e-11 | 65.1 |
| MS.gene22280.t1 | MTR_7g080410 | 27.962 | 211 | 128 | 8 | 43 | 241 | 36 | 234 | 4.75e-11 | 63.5 |
| MS.gene22280.t1 | MTR_7g080410 | 27.962 | 211 | 128 | 8 | 43 | 241 | 36 | 234 | 4.80e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22280.t1 | AT4G10020 | 67.714 | 350 | 105 | 4 | 1 | 348 | 2 | 345 | 2.27e-176 | 496 |
| MS.gene22280.t1 | AT5G50600 | 43.284 | 335 | 172 | 3 | 1 | 332 | 1 | 320 | 3.62e-85 | 262 |
| MS.gene22280.t1 | AT5G50700 | 43.284 | 335 | 172 | 3 | 1 | 332 | 1 | 320 | 3.62e-85 | 262 |
| MS.gene22280.t1 | AT3G47350 | 37.908 | 306 | 175 | 3 | 1 | 306 | 1 | 291 | 2.24e-69 | 220 |
| MS.gene22280.t1 | AT5G50690 | 39.803 | 304 | 171 | 2 | 1 | 304 | 1 | 292 | 8.51e-69 | 218 |
| MS.gene22280.t1 | AT5G50590 | 39.803 | 304 | 171 | 2 | 1 | 304 | 1 | 292 | 8.51e-69 | 218 |
| MS.gene22280.t1 | AT5G50770 | 38.730 | 315 | 185 | 2 | 1 | 312 | 1 | 310 | 2.62e-68 | 219 |
| MS.gene22280.t1 | AT3G47360 | 36.334 | 311 | 184 | 2 | 1 | 311 | 1 | 297 | 4.06e-62 | 202 |
| MS.gene22280.t1 | AT3G47350 | 40.000 | 255 | 147 | 2 | 1 | 255 | 1 | 249 | 5.42e-62 | 202 |
| MS.gene22280.t1 | AT5G50690 | 42.276 | 246 | 137 | 1 | 1 | 246 | 1 | 241 | 2.72e-59 | 192 |
| MS.gene22280.t1 | AT5G50590 | 42.276 | 246 | 137 | 1 | 1 | 246 | 1 | 241 | 2.72e-59 | 192 |
| MS.gene22280.t1 | AT3G47350 | 32.680 | 306 | 147 | 5 | 1 | 306 | 1 | 247 | 1.43e-46 | 160 |
| MS.gene22280.t1 | AT3G05260 | 26.471 | 238 | 157 | 8 | 38 | 267 | 30 | 257 | 9.58e-14 | 71.6 |
| MS.gene22280.t1 | AT3G03330 | 25.758 | 198 | 136 | 6 | 43 | 234 | 39 | 231 | 1.28e-11 | 65.5 |
Find 96 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAGAGTTTCTTCTTATTT+AGG | 0.129280 | 5.3:-2991279 | MS.gene22280:CDS |
| ACCACGACCAAAGACATTTA+TGG | 0.185510 | 5.3:+2992860 | None:intergenic |
| GGAGAGTTTCTTCTTATTTA+GGG | 0.241156 | 5.3:-2991278 | MS.gene22280:CDS |
| CCTTGTAAATACAGTAAGTT+TGG | 0.278909 | 5.3:-2992452 | MS.gene22280:CDS |
| TGGCTCTTTAACTATAATTA+TGG | 0.280186 | 5.3:-2993196 | MS.gene22280:CDS |
| ATGTTCTCAATTGGGCATTT+AGG | 0.291988 | 5.3:-2991326 | MS.gene22280:CDS |
| AATGAAACCATAAATGTCTT+TGG | 0.311625 | 5.3:-2992867 | MS.gene22280:CDS |
| CGAAGAGAGCATAGGCTAAT+AGG | 0.322565 | 5.3:-2992981 | MS.gene22280:CDS |
| TTGCTCCAAATGTTCTCAAT+TGG | 0.334210 | 5.3:-2991335 | MS.gene22280:CDS |
| CTATAATTATGGTGAAGATA+TGG | 0.336256 | 5.3:-2993185 | MS.gene22280:CDS |
| AGCAAGACATGTTATGATTA+TGG | 0.339422 | 5.3:-2992931 | MS.gene22280:CDS |
| TGATGTATTCTTGCTGTATA+GGG | 0.342416 | 5.3:-2991361 | MS.gene22280:CDS |
| ATGATGTATTCTTGCTGTAT+AGG | 0.353634 | 5.3:-2991362 | MS.gene22280:CDS |
| GCCAATGTGATCAAACTTGC+TGG | 0.376064 | 5.3:+2993259 | None:intergenic |
| TGACACTGTCACTGGTGGTA+TGG | 0.385040 | 5.3:-2991241 | MS.gene22280:CDS |
| AATGCCCAATTGAGAACATT+TGG | 0.386127 | 5.3:+2991330 | None:intergenic |
| GGAGAAGTTCCCTCCAACAT+AGG | 0.395498 | 5.3:+2991213 | None:intergenic |
| ATGGTTCCACTTACATTCTC+TGG | 0.400159 | 5.3:-2991174 | MS.gene22280:CDS |
| GTTGCATCTGGTGACTCAAT+TGG | 0.403327 | 5.3:+2991151 | None:intergenic |
| TGCTCCAAATGTTCTCAATT+GGG | 0.404590 | 5.3:-2991334 | MS.gene22280:CDS |
| TAATAACACGACCGTTGCTT+TGG | 0.410977 | 5.3:+2992190 | None:intergenic |
| TTGCATATGAGTATGCAATA+AGG | 0.412653 | 5.3:-2993028 | MS.gene22280:CDS |
| TTGCCAAGGATGAGTTTGTT+TGG | 0.413187 | 5.3:-2992138 | MS.gene22280:CDS |
| AAACTCTCCTTGTCCCTTGT+GGG | 0.451143 | 5.3:+2991292 | None:intergenic |
| GAAATTCTCACCAAGAGAAC+AGG | 0.452904 | 5.3:+2992385 | None:intergenic |
| GACACTGTCACTGGTGGTAT+GGG | 0.453430 | 5.3:-2991240 | MS.gene22280:CDS |
| TCACCAGATGCAACAAAAGA+TGG | 0.464839 | 5.3:-2991142 | MS.gene22280:CDS |
| CTTGTAAATACAGTAAGTTT+GGG | 0.481490 | 5.3:-2992451 | MS.gene22280:CDS |
| GCTGAGAATGCAAGGCGAAT+CGG | 0.483692 | 5.3:-2992954 | MS.gene22280:CDS |
| GTTTCTTCTTATTTAGGGAC+AGG | 0.486130 | 5.3:-2991273 | MS.gene22280:CDS |
| CATATGTGAAGTTTCCTAGT+TGG | 0.490972 | 5.3:-2991386 | MS.gene22280:CDS |
| CCAAACTTACTGTATTTACA+AGG | 0.495174 | 5.3:+2992452 | None:intergenic |
| TTTGCAAGGTTGATTGTAAG+TGG | 0.495388 | 5.3:-2991426 | MS.gene22280:CDS |
| AGTAAAGTTGTCATCATCAC+TGG | 0.495753 | 5.3:-2993160 | MS.gene22280:CDS |
| ACTGGAGCATCTTCTGCCAT+TGG | 0.496925 | 5.3:-2993142 | MS.gene22280:CDS |
| ATAGCAACACACGGTTGGAT+TGG | 0.504224 | 5.3:-2991898 | MS.gene22280:CDS |
| ACCATAAATGTCTTTGGTCG+TGG | 0.504643 | 5.3:-2992861 | MS.gene22280:intron |
| GAGAGCAAATTTAATGTTGG+TGG | 0.506436 | 5.3:-2993006 | MS.gene22280:CDS |
| CCGTTGCTTTGGTGAAGGTA+AGG | 0.507356 | 5.3:+2992201 | None:intergenic |
| AAGGAGAGCAAATTTAATGT+TGG | 0.513576 | 5.3:-2993009 | MS.gene22280:CDS |
| TGATCACATTGGCTTTCTCA+TGG | 0.514950 | 5.3:-2993249 | MS.gene22280:CDS |
| ACACCAAACAAACTCATCCT+TGG | 0.527782 | 5.3:+2992135 | None:intergenic |
| TCAATGCATCAGTTGAGAGT+TGG | 0.528271 | 5.3:-2992167 | MS.gene22280:CDS |
| AGATCCCTTGACACTGTCAC+TGG | 0.528905 | 5.3:-2991249 | MS.gene22280:CDS |
| TTTGAATTGAAAGACGAGGT+TGG | 0.530727 | 5.3:-2991928 | MS.gene22280:CDS |
| GAAACTCTCCTTGTCCCTTG+TGG | 0.532546 | 5.3:+2991291 | None:intergenic |
| CAAGTTCATGCTAGAGGAGG+GGG | 0.534060 | 5.3:-2991857 | MS.gene22280:CDS |
| TTGGCAACTTGCCTCTCCAA+TGG | 0.547635 | 5.3:+2993126 | None:intergenic |
| TGCAAGGTTGATTGTAAGTG+GGG | 0.547799 | 5.3:-2991424 | MS.gene22280:CDS |
| TTGCAAGGTTGATTGTAAGT+GGG | 0.549501 | 5.3:-2991425 | MS.gene22280:CDS |
| GTTTCCTCAATGCCTGTGAG+TGG | 0.552208 | 5.3:-2993216 | MS.gene22280:CDS |
| TCCAGCAAGTTTGATCACAT+TGG | 0.555899 | 5.3:-2993260 | MS.gene22280:CDS |
| ATTGTAAGTGGGGCATGTAG+AGG | 0.556954 | 5.3:-2991414 | MS.gene22280:CDS |
| AGAGTTGGCTACCTTTGCCA+AGG | 0.557855 | 5.3:-2992152 | MS.gene22280:CDS |
| TTATTTCCCCACAAGGGACA+AGG | 0.562417 | 5.3:-2991299 | MS.gene22280:CDS |
| GGCAAGTTCATGCTAGAGGA+GGG | 0.566062 | 5.3:-2991859 | MS.gene22280:CDS |
| GGGGAATGTTTATCCGACGT+TGG | 0.567658 | 5.3:-2992232 | MS.gene22280:CDS |
| GAATGTTTATCCGACGTTGG+TGG | 0.571933 | 5.3:-2992229 | MS.gene22280:CDS |
| TAGGAATTGCTGAGAATGCA+AGG | 0.574860 | 5.3:-2992962 | MS.gene22280:CDS |
| AATTGGCCAGAGAATGTAAG+TGG | 0.578070 | 5.3:+2991168 | None:intergenic |
| AACTCTCCTTGTCCCTTGTG+GGG | 0.578247 | 5.3:+2991293 | None:intergenic |
| AGAGCCACTCACAGGCATTG+AGG | 0.578608 | 5.3:+2993212 | None:intergenic |
| TAACGATAGCAACACACGGT+TGG | 0.578942 | 5.3:-2991903 | MS.gene22280:CDS |
| CACGACCGTTGCTTTGGTGA+AGG | 0.579262 | 5.3:+2992196 | None:intergenic |
| GCATTGAGGAAACAAAGTGC+TGG | 0.580623 | 5.3:+2993226 | None:intergenic |
| TACCACCAGTGACAGTGTCA+AGG | 0.582504 | 5.3:+2991244 | None:intergenic |
| GCAAGTTCATGCTAGAGGAG+GGG | 0.593135 | 5.3:-2991858 | MS.gene22280:CDS |
| TGGTATGGGGAAACCTATGT+TGG | 0.595262 | 5.3:-2991226 | MS.gene22280:CDS |
| AGGCAAGTTCATGCTAGAGG+AGG | 0.598499 | 5.3:-2991860 | MS.gene22280:CDS |
| ATAGTTAAAGAGCCACTCAC+AGG | 0.599128 | 5.3:+2993204 | None:intergenic |
| GGCTTCTTATTTCCCCACAA+GGG | 0.606717 | 5.3:-2991305 | MS.gene22280:CDS |
| ACCACCAGTGACAGTGTCAA+GGG | 0.610662 | 5.3:+2991245 | None:intergenic |
| TATGGGGAAACCTATGTTGG+AGG | 0.613134 | 5.3:-2991223 | MS.gene22280:CDS |
| CATGTAATGTAAGGCTGCAA+AGG | 0.613357 | 5.3:-2991983 | MS.gene22280:intron |
| AGCATCTTCTGCCATTGGAG+AGG | 0.616348 | 5.3:-2993137 | MS.gene22280:CDS |
| AACAAACTCATCCTTGGCAA+AGG | 0.620180 | 5.3:+2992141 | None:intergenic |
| AGGCTTCTTATTTCCCCACA+AGG | 0.623149 | 5.3:-2991306 | MS.gene22280:CDS |
| ACCATGCCTGTGTGATGTCT+AGG | 0.624062 | 5.3:+2991192 | None:intergenic |
| TCCTAGACATCACACAGGCA+TGG | 0.627036 | 5.3:-2991193 | MS.gene22280:CDS |
| TATGGCAGCAGATGTTGTCA+AGG | 0.628152 | 5.3:-2992913 | MS.gene22280:CDS |
| AAGAATACATCATACCAACT+AGG | 0.632930 | 5.3:+2991372 | None:intergenic |
| AAGCAGTAGAAGAATTTGCA+AGG | 0.634067 | 5.3:-2991440 | MS.gene22280:CDS |
| CCTTACCTTCACCAAAGCAA+CGG | 0.636544 | 5.3:-2992201 | MS.gene22280:CDS |
| ATGGGGAAACCTATGTTGGA+GGG | 0.639328 | 5.3:-2991222 | MS.gene22280:CDS |
| TCCCTTGACACTGTCACTGG+TGG | 0.643537 | 5.3:-2991246 | MS.gene22280:CDS |
| TGGTGGCACGAAGAGAGCAT+AGG | 0.647406 | 5.3:-2992989 | MS.gene22280:CDS |
| GCGATTTGAATTGAAAGACG+AGG | 0.653464 | 5.3:-2991932 | MS.gene22280:CDS |
| GAGAGGCAAGTTCATGCTAG+AGG | 0.654649 | 5.3:-2991863 | MS.gene22280:CDS |
| ATGTGATCAAACTTGCTGGA+GGG | 0.657173 | 5.3:+2993263 | None:intergenic |
| ACACTGTCACTGGTGGTATG+GGG | 0.662350 | 5.3:-2991239 | MS.gene22280:CDS |
| TAAGGAAGAGCCACCAACGT+CGG | 0.674125 | 5.3:+2992219 | None:intergenic |
| TGAATTTAGATGCATGTGAG+TGG | 0.689132 | 5.3:-2991465 | MS.gene22280:intron |
| AATGTGATCAAACTTGCTGG+AGG | 0.689941 | 5.3:+2993262 | None:intergenic |
| ATTGGAAGTGAAATGACGAG+AGG | 0.705490 | 5.3:-2991880 | MS.gene22280:CDS |
| GGAGTAACGATAGCAACACA+CGG | 0.756771 | 5.3:-2991907 | MS.gene22280:CDS |
| ACTTCTCCTAGACATCACAC+AGG | 0.761651 | 5.3:-2991198 | MS.gene22280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAATAGCTTATATAT+AGG | - | chr5.3:2991724-2991743 | MS.gene22280:intron | 10.0% |
| !!! | CTTTTAATTTTAAATGAATT+AGG | + | chr5.3:2992111-2992130 | None:intergenic | 10.0% |
| !!! | TTTTTAGGATATTAATTTTT+GGG | - | chr5.3:2992182-2992201 | MS.gene22280:CDS | 10.0% |
| !! | ATGTAATTATTGCTAAAATT+AGG | - | chr5.3:2992799-2992818 | MS.gene22280:intron | 15.0% |
| !! | TTTATTAATTTAAAGAGTCA+TGG | + | chr5.3:2991925-2991944 | None:intergenic | 15.0% |
| !!! | AAACTTTAATACAAACATTT+TGG | + | chr5.3:2991331-2991350 | None:intergenic | 15.0% |
| !!! | CTTTTTAGGATATTAATTTT+TGG | - | chr5.3:2992181-2992200 | MS.gene22280:CDS | 15.0% |
| !!! | TAATTTTAGCAATAATTACA+TGG | + | chr5.3:2992800-2992819 | None:intergenic | 15.0% |
| !!! | TTTTAGGATATTAATTTTTG+GGG | - | chr5.3:2992183-2992202 | MS.gene22280:CDS | 15.0% |
| !! | CATATTATTATGAGATAATG+TGG | - | chr5.3:2992157-2992176 | MS.gene22280:CDS | 20.0% |
| !! | TAGAATTACAGTATAAACTT+AGG | + | chr5.3:2991882-2991901 | None:intergenic | 20.0% |
| !!! | TTTAGGATATTAATTTTTGG+GGG | - | chr5.3:2992184-2992203 | MS.gene22280:CDS | 20.0% |
| ! | AATGAAACCATAAATGTCTT+TGG | - | chr5.3:2991568-2991587 | MS.gene22280:intron | 25.0% |
| ! | ACACTATAGTTATAGTCAAT+TGG | - | chr5.3:2992664-2992683 | MS.gene22280:intron | 25.0% |
| ! | CAAATTAGTATGTACTACTT+CGG | + | chr5.3:2992931-2992950 | None:intergenic | 25.0% |
| ! | CTATAATTATGGTGAAGATA+TGG | - | chr5.3:2991250-2991269 | MS.gene22280:CDS | 25.0% |
| ! | CTTGTAAATACAGTAAGTTT+GGG | - | chr5.3:2991984-2992003 | MS.gene22280:intron | 25.0% |
| ! | TATTATGTGCATGTAATGTA+AGG | - | chr5.3:2992443-2992462 | MS.gene22280:CDS | 25.0% |
| ! | TGGCTCTTTAACTATAATTA+TGG | - | chr5.3:2991239-2991258 | MS.gene22280:CDS | 25.0% |
| !!! | GTTTTTTCATGTGTATGATT+TGG | - | chr5.3:2991371-2991390 | MS.gene22280:CDS | 25.0% |
| !!! | TTTAATTTTGCTGTTCTGTT+TGG | - | chr5.3:2992403-2992422 | MS.gene22280:CDS | 25.0% |
| AAGAATACATCATACCAACT+AGG | + | chr5.3:2993066-2993085 | None:intergenic | 30.0% | |
| AAGGAGAGCAAATTTAATGT+TGG | - | chr5.3:2991426-2991445 | MS.gene22280:CDS | 30.0% | |
| AATATGAATGATGTGAAAGG+TGG | + | chr5.3:2991839-2991858 | None:intergenic | 30.0% | |
| ACATTAAGCTTATTGCACTA+AGG | - | chr5.3:2991801-2991820 | MS.gene22280:intron | 30.0% | |
| AGCAAGACATGTTATGATTA+TGG | - | chr5.3:2991504-2991523 | MS.gene22280:intron | 30.0% | |
| CCAAACTTACTGTATTTACA+AGG | + | chr5.3:2991986-2992005 | None:intergenic | 30.0% | |
| CCTTGTAAATACAGTAAGTT+TGG | - | chr5.3:2991983-2992002 | MS.gene22280:intron | 30.0% | |
| TAAACACTTGTGAGAATGTT+CGG | - | chr5.3:2991639-2991658 | MS.gene22280:intron | 30.0% | |
| TAGTTATAGTCAATTGGACA+TGG | - | chr5.3:2992670-2992689 | MS.gene22280:intron | 30.0% | |
| TATAGCTTATATGAAGCAGT+TGG | - | chr5.3:2991682-2991701 | MS.gene22280:intron | 30.0% | |
| TGCAATATGAATGATGTGAA+AGG | + | chr5.3:2991842-2991861 | None:intergenic | 30.0% | |
| TTGCATATGAGTATGCAATA+AGG | - | chr5.3:2991407-2991426 | MS.gene22280:CDS | 30.0% | |
| ! | AGCAAAAAAGTACATGTATC+AGG | + | chr5.3:2992897-2992916 | None:intergenic | 30.0% |
| ! | AGCAAAAAAGTACATGTATG+TGG | - | chr5.3:2992857-2992876 | MS.gene22280:intron | 30.0% |
| ! | AGGAGAGTTTCTTCTTATTT+AGG | - | chr5.3:2993156-2993175 | MS.gene22280:CDS | 30.0% |
| ! | ATGATGTATTCTTGCTGTAT+AGG | - | chr5.3:2993073-2993092 | MS.gene22280:intron | 30.0% |
| ! | GGAGAGTTTCTTCTTATTTA+GGG | - | chr5.3:2993157-2993176 | MS.gene22280:CDS | 30.0% |
| ! | TGAGATAATGTGGTCTTTTT+AGG | - | chr5.3:2992167-2992186 | MS.gene22280:CDS | 30.0% |
| ! | TGATGTATTCTTGCTGTATA+GGG | - | chr5.3:2993074-2993093 | MS.gene22280:intron | 30.0% |
| AAGCAGTAGAAGAATTTGCA+AGG | - | chr5.3:2992995-2993014 | MS.gene22280:CDS | 35.0% | |
| AATGCCCAATTGAGAACATT+TGG | + | chr5.3:2993108-2993127 | None:intergenic | 35.0% | |
| AGTAAAGTTGTCATCATCAC+TGG | - | chr5.3:2991275-2991294 | MS.gene22280:CDS | 35.0% | |
| ATGTTCTCAATTGGGCATTT+AGG | - | chr5.3:2993109-2993128 | MS.gene22280:intron | 35.0% | |
| CATATGTGAAGTTTCCTAGT+TGG | - | chr5.3:2993049-2993068 | MS.gene22280:intron | 35.0% | |
| GAGAGCAAATTTAATGTTGG+TGG | - | chr5.3:2991429-2991448 | MS.gene22280:CDS | 35.0% | |
| TATAGTCAATTGGACATGGT+TGG | - | chr5.3:2992674-2992693 | MS.gene22280:intron | 35.0% | |
| TGAATTTAGATGCATGTGAG+TGG | - | chr5.3:2992970-2992989 | MS.gene22280:CDS | 35.0% | |
| TGCAAATGCAATTTGTAGCA+AGG | + | chr5.3:2992639-2992658 | None:intergenic | 35.0% | |
| TGCTCCAAATGTTCTCAATT+GGG | - | chr5.3:2993101-2993120 | MS.gene22280:intron | 35.0% | |
| TTGCTCCAAATGTTCTCAAT+TGG | - | chr5.3:2993100-2993119 | MS.gene22280:intron | 35.0% | |
| TTTGAATTGAAAGACGAGGT+TGG | - | chr5.3:2992507-2992526 | MS.gene22280:intron | 35.0% | |
| ! | AATCCATCTTTTGTTGCATC+TGG | + | chr5.3:2993299-2993318 | None:intergenic | 35.0% |
| ! | CATGGTTGGTATTGGAAAAA+TGG | - | chr5.3:2992688-2992707 | MS.gene22280:intron | 35.0% |
| ! | GTTTCTTCTTATTTAGGGAC+AGG | - | chr5.3:2993162-2993181 | MS.gene22280:CDS | 35.0% |
| ! | TTGCAAGGTTGATTGTAAGT+GGG | - | chr5.3:2993010-2993029 | MS.gene22280:CDS | 35.0% |
| ! | TTTGCAAGGTTGATTGTAAG+TGG | - | chr5.3:2993009-2993028 | MS.gene22280:CDS | 35.0% |
| AACAAACTCATCCTTGGCAA+AGG | + | chr5.3:2992297-2992316 | None:intergenic | 40.0% | |
| AATTGGCCAGAGAATGTAAG+TGG | + | chr5.3:2993270-2993289 | None:intergenic | 40.0% | |
| ACACCAAACAAACTCATCCT+TGG | + | chr5.3:2992303-2992322 | None:intergenic | 40.0% | |
| ACCACGACCAAAGACATTTA+TGG | + | chr5.3:2991578-2991597 | None:intergenic | 40.0% | |
| ACCATAAATGTCTTTGGTCG+TGG | - | chr5.3:2991574-2991593 | MS.gene22280:intron | 40.0% | |
| ATAGTTAAAGAGCCACTCAC+AGG | + | chr5.3:2991234-2991253 | None:intergenic | 40.0% | |
| ATGGTTCCACTTACATTCTC+TGG | - | chr5.3:2993261-2993280 | MS.gene22280:CDS | 40.0% | |
| ATTGGAAGTGAAATGACGAG+AGG | - | chr5.3:2992555-2992574 | MS.gene22280:intron | 40.0% | |
| CAAGAGAACAGGAAAAACTG+AGG | + | chr5.3:2992042-2992061 | None:intergenic | 40.0% | |
| CATGTAATGTAAGGCTGCAA+AGG | - | chr5.3:2992452-2992471 | MS.gene22280:CDS | 40.0% | |
| GAAATTCTCACCAAGAGAAC+AGG | + | chr5.3:2992053-2992072 | None:intergenic | 40.0% | |
| GCGATTTGAATTGAAAGACG+AGG | - | chr5.3:2992503-2992522 | MS.gene22280:intron | 40.0% | |
| GTGTTATGATCTCGTTTCTC+TGG | - | chr5.3:2992823-2992842 | MS.gene22280:intron | 40.0% | |
| TAATAACACGACCGTTGCTT+TGG | + | chr5.3:2992248-2992267 | None:intergenic | 40.0% | |
| TAGGAATTGCTGAGAATGCA+AGG | - | chr5.3:2991473-2991492 | MS.gene22280:intron | 40.0% | |
| TCAATGCATCAGTTGAGAGT+TGG | - | chr5.3:2992268-2992287 | MS.gene22280:intron | 40.0% | |
| TCACCAGATGCAACAAAAGA+TGG | - | chr5.3:2993293-2993312 | MS.gene22280:CDS | 40.0% | |
| TCCAGCAAGTTTGATCACAT+TGG | - | chr5.3:2991175-2991194 | MS.gene22280:CDS | 40.0% | |
| TTGGTCGTGGTATGTTTCTT+TGG | - | chr5.3:2991587-2991606 | MS.gene22280:intron | 40.0% | |
| ! | CAATTGGACATGGTTGGTAT+TGG | - | chr5.3:2992680-2992699 | MS.gene22280:intron | 40.0% |
| ! | CTCAGTTTTTCCTGTTCTCT+TGG | - | chr5.3:2992040-2992059 | MS.gene22280:intron | 40.0% |
| ! | TGCAAGGTTGATTGTAAGTG+GGG | - | chr5.3:2993011-2993030 | MS.gene22280:CDS | 40.0% |
| ! | TTGCCAAGGATGAGTTTGTT+TGG | - | chr5.3:2992297-2992316 | MS.gene22280:intron | 40.0% |
| !! | AATGTGATCAAACTTGCTGG+AGG | + | chr5.3:2991176-2991195 | None:intergenic | 40.0% |
| !! | ATGTGATCAAACTTGCTGGA+GGG | + | chr5.3:2991175-2991194 | None:intergenic | 40.0% |
| !! | TGATCACATTGGCTTTCTCA+TGG | - | chr5.3:2991186-2991205 | MS.gene22280:CDS | 40.0% |
| AAACTCTCCTTGTCCCTTGT+GGG | + | chr5.3:2993146-2993165 | None:intergenic | 45.0% | |
| ACTTCTCCTAGACATCACAC+AGG | - | chr5.3:2993237-2993256 | MS.gene22280:CDS | 45.0% | |
| ATAGCAACACACGGTTGGAT+TGG | - | chr5.3:2992537-2992556 | MS.gene22280:intron | 45.0% | |
| ATGGGGAAACCTATGTTGGA+GGG | - | chr5.3:2993213-2993232 | MS.gene22280:CDS | 45.0% | |
| ATTGTAAGTGGGGCATGTAG+AGG | - | chr5.3:2993021-2993040 | MS.gene22280:CDS | 45.0% | |
| CCTTACCTTCACCAAAGCAA+CGG | - | chr5.3:2992234-2992253 | MS.gene22280:CDS | 45.0% | |
| GAATGTTTATCCGACGTTGG+TGG | - | chr5.3:2992206-2992225 | MS.gene22280:CDS | 45.0% | |
| GCATTGAGGAAACAAAGTGC+TGG | + | chr5.3:2991212-2991231 | None:intergenic | 45.0% | |
| GCCAATGTGATCAAACTTGC+TGG | + | chr5.3:2991179-2991198 | None:intergenic | 45.0% | |
| GGAGTAACGATAGCAACACA+CGG | - | chr5.3:2992528-2992547 | MS.gene22280:intron | 45.0% | |
| GTTGCATCTGGTGACTCAAT+TGG | + | chr5.3:2993287-2993306 | None:intergenic | 45.0% | |
| TAACGATAGCAACACACGGT+TGG | - | chr5.3:2992532-2992551 | MS.gene22280:intron | 45.0% | |
| TATGGCAGCAGATGTTGTCA+AGG | - | chr5.3:2991522-2991541 | MS.gene22280:intron | 45.0% | |
| TATGGGGAAACCTATGTTGG+AGG | - | chr5.3:2993212-2993231 | MS.gene22280:CDS | 45.0% | |
| TGGTATGGGGAAACCTATGT+TGG | - | chr5.3:2993209-2993228 | MS.gene22280:CDS | 45.0% | |
| TTATTTCCCCACAAGGGACA+AGG | - | chr5.3:2993136-2993155 | MS.gene22280:CDS | 45.0% | |
| ! | AGGCTTCTTATTTCCCCACA+AGG | - | chr5.3:2993129-2993148 | MS.gene22280:CDS | 45.0% |
| ! | CGAAGAGAGCATAGGCTAAT+AGG | - | chr5.3:2991454-2991473 | MS.gene22280:CDS | 45.0% |
| ! | GGCTTCTTATTTCCCCACAA+GGG | - | chr5.3:2993130-2993149 | MS.gene22280:CDS | 45.0% |
| !!! | TTTTAATTTTAAATGAATTA+GGG | + | chr5.3:2992110-2992129 | None:intergenic | 5.0% |
| AACTCTCCTTGTCCCTTGTG+GGG | + | chr5.3:2993145-2993164 | None:intergenic | 50.0% | |
| ACACTGTCACTGGTGGTATG+GGG | - | chr5.3:2993196-2993215 | MS.gene22280:CDS | 50.0% | |
| ACCACCAGTGACAGTGTCAA+GGG | + | chr5.3:2993193-2993212 | None:intergenic | 50.0% | |
| ACCATGCCTGTGTGATGTCT+AGG | + | chr5.3:2993246-2993265 | None:intergenic | 50.0% | |
| AGAGTTGGCTACCTTTGCCA+AGG | - | chr5.3:2992283-2992302 | MS.gene22280:intron | 50.0% | |
| AGATCCCTTGACACTGTCAC+TGG | - | chr5.3:2993186-2993205 | MS.gene22280:CDS | 50.0% | |
| AGCATCTTCTGCCATTGGAG+AGG | - | chr5.3:2991298-2991317 | MS.gene22280:CDS | 50.0% | |
| AGGCAAGTTCATGCTAGAGG+AGG | - | chr5.3:2992575-2992594 | MS.gene22280:intron | 50.0% | |
| CAAGTTCATGCTAGAGGAGG+GGG | - | chr5.3:2992578-2992597 | MS.gene22280:intron | 50.0% | |
| GAAACTCTCCTTGTCCCTTG+TGG | + | chr5.3:2993147-2993166 | None:intergenic | 50.0% | |
| GACACTGTCACTGGTGGTAT+GGG | - | chr5.3:2993195-2993214 | MS.gene22280:CDS | 50.0% | |
| GAGAGGCAAGTTCATGCTAG+AGG | - | chr5.3:2992572-2992591 | MS.gene22280:intron | 50.0% | |
| GCAAGTTCATGCTAGAGGAG+GGG | - | chr5.3:2992577-2992596 | MS.gene22280:intron | 50.0% | |
| GCTGAGAATGCAAGGCGAAT+CGG | - | chr5.3:2991481-2991500 | MS.gene22280:intron | 50.0% | |
| GGAGAAGTTCCCTCCAACAT+AGG | + | chr5.3:2993225-2993244 | None:intergenic | 50.0% | |
| GGCAAGTTCATGCTAGAGGA+GGG | - | chr5.3:2992576-2992595 | MS.gene22280:intron | 50.0% | |
| GGGGAATGTTTATCCGACGT+TGG | - | chr5.3:2992203-2992222 | MS.gene22280:CDS | 50.0% | |
| GTTTCCTCAATGCCTGTGAG+TGG | - | chr5.3:2991219-2991238 | MS.gene22280:CDS | 50.0% | |
| TAAGGAAGAGCCACCAACGT+CGG | + | chr5.3:2992219-2992238 | None:intergenic | 50.0% | |
| TACCACCAGTGACAGTGTCA+AGG | + | chr5.3:2993194-2993213 | None:intergenic | 50.0% | |
| TCCTAGACATCACACAGGCA+TGG | - | chr5.3:2993242-2993261 | MS.gene22280:CDS | 50.0% | |
| TGACACTGTCACTGGTGGTA+TGG | - | chr5.3:2993194-2993213 | MS.gene22280:CDS | 50.0% | |
| TTGGCAACTTGCCTCTCCAA+TGG | + | chr5.3:2991312-2991331 | None:intergenic | 50.0% | |
| ! | ACTGGAGCATCTTCTGCCAT+TGG | - | chr5.3:2991293-2991312 | MS.gene22280:CDS | 50.0% |
| ! | CCGTTGCTTTGGTGAAGGTA+AGG | + | chr5.3:2992237-2992256 | None:intergenic | 50.0% |
| TCCCTTGACACTGTCACTGG+TGG | - | chr5.3:2993189-2993208 | MS.gene22280:CDS | 55.0% | |
| ! | AGAGCCACTCACAGGCATTG+AGG | + | chr5.3:2991226-2991245 | None:intergenic | 55.0% |
| ! | CACGACCGTTGCTTTGGTGA+AGG | + | chr5.3:2992242-2992261 | None:intergenic | 55.0% |
| ! | TGGTGGCACGAAGAGAGCAT+AGG | - | chr5.3:2991446-2991465 | MS.gene22280:CDS | 55.0% |
| AGGAGGGGGCTGACATGCAG+TGG | - | chr5.3:2992592-2992611 | MS.gene22280:intron | 65.0% | |
| GGGGGCTGACATGCAGTGGA+AGG | - | chr5.3:2992596-2992615 | MS.gene22280:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 2991137 | 2993320 | 2991137 | ID=MS.gene22280 |
| chr5.3 | mRNA | 2991137 | 2993320 | 2991137 | ID=MS.gene22280.t1;Parent=MS.gene22280 |
| chr5.3 | exon | 2993123 | 2993320 | 2993123 | ID=MS.gene22280.t1.exon1;Parent=MS.gene22280.t1 |
| chr5.3 | CDS | 2993123 | 2993320 | 2993123 | ID=cds.MS.gene22280.t1;Parent=MS.gene22280.t1 |
| chr5.3 | exon | 2992862 | 2993054 | 2992862 | ID=MS.gene22280.t1.exon2;Parent=MS.gene22280.t1 |
| chr5.3 | CDS | 2992862 | 2993054 | 2992862 | ID=cds.MS.gene22280.t1;Parent=MS.gene22280.t1 |
| chr5.3 | exon | 2992396 | 2992481 | 2992396 | ID=MS.gene22280.t1.exon3;Parent=MS.gene22280.t1 |
| chr5.3 | CDS | 2992396 | 2992481 | 2992396 | ID=cds.MS.gene22280.t1;Parent=MS.gene22280.t1 |
| chr5.3 | exon | 2992137 | 2992268 | 2992137 | ID=MS.gene22280.t1.exon4;Parent=MS.gene22280.t1 |
| chr5.3 | CDS | 2992137 | 2992268 | 2992137 | ID=cds.MS.gene22280.t1;Parent=MS.gene22280.t1 |
| chr5.3 | exon | 2991828 | 2991992 | 2991828 | ID=MS.gene22280.t1.exon5;Parent=MS.gene22280.t1 |
| chr5.3 | CDS | 2991828 | 2991992 | 2991828 | ID=cds.MS.gene22280.t1;Parent=MS.gene22280.t1 |
| chr5.3 | exon | 2991137 | 2991478 | 2991137 | ID=MS.gene22280.t1.exon6;Parent=MS.gene22280.t1 |
| chr5.3 | CDS | 2991137 | 2991478 | 2991137 | ID=cds.MS.gene22280.t1;Parent=MS.gene22280.t1 |
| Gene Sequence |
| Protein sequence |
