Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22453.t1 | XP_003625596.1 | 97.3 | 184 | 5 | 0 | 1 | 184 | 48 | 231 | 1.80E-108 | 401.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22453.t1 | B4FUS3 | 67.4 | 187 | 52 | 2 | 6 | 183 | 46 | 232 | 3.2e-74 | 279.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22453.t1 | G7L1S3 | 97.3 | 184 | 5 | 0 | 1 | 184 | 48 | 231 | 1.3e-108 | 401.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene22453 | -0.817375 | 3.41E-52 | -1.69E-46 |
| MS.gene052281 | MS.gene22453 | 0.811126 | 8.18E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene22453 | -0.803252 | 3.81E-49 | -1.69E-46 |
| MS.gene059896 | MS.gene22453 | 0.818758 | 1.66E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene22453 | 0.816095 | 6.60E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22453.t1 | MTR_7g100870 | 97.283 | 184 | 5 | 0 | 1 | 184 | 48 | 231 | 8.97e-134 | 374 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22453.t1 | AT2G37110 | 72.527 | 182 | 50 | 0 | 1 | 182 | 60 | 241 | 7.80e-97 | 281 |
| MS.gene22453.t1 | AT2G40935 | 28.571 | 175 | 80 | 6 | 16 | 180 | 47 | 186 | 7.81e-13 | 64.3 |
| MS.gene22453.t1 | AT2G40935 | 28.571 | 175 | 80 | 6 | 16 | 180 | 47 | 186 | 7.81e-13 | 64.3 |
| MS.gene22453.t1 | AT2G40935 | 28.571 | 175 | 80 | 6 | 16 | 180 | 47 | 186 | 7.81e-13 | 64.3 |
| MS.gene22453.t1 | AT2G40935 | 28.571 | 175 | 80 | 6 | 16 | 180 | 47 | 186 | 7.81e-13 | 64.3 |
| MS.gene22453.t1 | AT2G40935 | 28.571 | 175 | 80 | 6 | 16 | 180 | 47 | 186 | 7.81e-13 | 64.3 |
Find 60 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACCCATGGTTTGCTCTCC+TGG | 0.155725 | 7.1:-8365602 | None:intergenic |
| CCGTCGCAGGTTCAATTTAG+AGG | 0.280233 | 7.1:+8363665 | MS.gene22453:CDS |
| AATCACTGTTTGCATTATTC+TGG | 0.315644 | 7.1:+8363564 | MS.gene22453:CDS |
| CATTCTAATCCTGGGACATT+TGG | 0.320185 | 7.1:+8363540 | MS.gene22453:CDS |
| GGATACGTGCTAGGTCTTCT+TGG | 0.336415 | 7.1:+8363471 | MS.gene22453:intron |
| TGGGTGCTGCGGAAGCTATT+TGG | 0.374015 | 7.1:+8365424 | MS.gene22453:CDS |
| AGCCCATTCCTGGTTCTCCT+TGG | 0.384754 | 7.1:+8362531 | MS.gene22453:CDS |
| TCCTCCGTCTGCGCTTGTCT+TGG | 0.401288 | 7.1:+8362557 | MS.gene22453:CDS |
| CTTCAATGCACAACCAGTAT+TGG | 0.404863 | 7.1:+8365568 | MS.gene22453:CDS |
| GAAGTTGTGAGGCATTTAAT+AGG | 0.405597 | 7.1:+8365396 | MS.gene22453:CDS |
| GTCATGGGTCAGCCCATTCC+TGG | 0.407709 | 7.1:+8362521 | MS.gene22453:CDS |
| GACCCATGGTTTGCTCTCCT+GGG | 0.411796 | 7.1:-8365601 | None:intergenic |
| GTGATTGGGAATTCATGCTT+TGG | 0.424535 | 7.1:+8363594 | MS.gene22453:CDS |
| CGCCGTAGAGTGCCTCATCC+TGG | 0.426616 | 7.1:+8365545 | MS.gene22453:CDS |
| TATTCTGGACTGTATGTGAT+TGG | 0.427733 | 7.1:+8363579 | MS.gene22453:CDS |
| GTGGCTCCTTGTGTGCTGTA+TGG | 0.429471 | 7.1:+8363498 | MS.gene22453:CDS |
| GAGAGACTTCATTCTAATCC+TGG | 0.446721 | 7.1:+8363531 | MS.gene22453:CDS |
| TGCTGCAAAAGTGATCGTTT+TGG | 0.456070 | 7.1:-8362580 | None:intergenic |
| TGTGCTGTATGGAAGCAATA+TGG | 0.456712 | 7.1:+8363509 | MS.gene22453:CDS |
| GATACGTGCTAGGTCTTCTT+GGG | 0.460038 | 7.1:+8363472 | MS.gene22453:intron |
| GGAGAGCAAACCATGGGTCG+TGG | 0.465391 | 7.1:+8365605 | MS.gene22453:CDS |
| ATGGGCCATGGAAGCGTCAT+GGG | 0.486800 | 7.1:+8362506 | MS.gene22453:CDS |
| GATGGGCTTCCGATGGGCCA+TGG | 0.493261 | 7.1:+8362494 | None:intergenic |
| GTTGGAATTGTCTTGCACCC+TGG | 0.503169 | 7.1:+8363616 | MS.gene22453:CDS |
| CGGAAGCTATTTGGAAAATG+AGG | 0.509204 | 7.1:+8365433 | MS.gene22453:CDS |
| ACGGCTATGATATGAAAGCC+AGG | 0.511774 | 7.1:-8363634 | None:intergenic |
| GATGGGCCATGGAAGCGTCA+TGG | 0.513821 | 7.1:+8362505 | None:intergenic |
| GTCTGTGCTCTTTGTCAAGA+AGG | 0.519013 | 7.1:+8365512 | MS.gene22453:CDS |
| TTGGGAATTCATGCTTTGGT+TGG | 0.519796 | 7.1:+8363598 | MS.gene22453:CDS |
| TTCCAAGGAGAACCAGGAAT+GGG | 0.533389 | 7.1:-8362533 | None:intergenic |
| ATTCTGGACTGTATGTGATT+GGG | 0.533754 | 7.1:+8363580 | MS.gene22453:CDS |
| GCTGACCCATGACGCTTCCA+TGG | 0.535716 | 7.1:-8362511 | None:intergenic |
| GAGAGCAAACCATGGGTCGT+GGG | 0.539054 | 7.1:+8365606 | MS.gene22453:CDS |
| CAGTGATTGCCAAATGTCCC+AGG | 0.539931 | 7.1:-8363549 | None:intergenic |
| TCTTCAAGCCCCACGACCCA+TGG | 0.541687 | 7.1:-8365615 | None:intergenic |
| GAGGAGTTCCAAGGAGAACC+AGG | 0.543465 | 7.1:-8362539 | None:intergenic |
| ACCCATGGTTTGCTCTCCTG+GGG | 0.548999 | 7.1:-8365600 | None:intergenic |
| GCCGTACTGAAATCCGTCGC+AGG | 0.563057 | 7.1:+8363652 | MS.gene22453:CDS |
| TTGGCCAAGACAAGCGCAGA+CGG | 0.569231 | 7.1:-8362561 | None:intergenic |
| GCAGCGTGAACATTATGAGT+TGG | 0.577730 | 7.1:+8365457 | MS.gene22453:CDS |
| GCGCAGACGGAGGAGTTCCA+AGG | 0.578089 | 7.1:-8362548 | None:intergenic |
| AGCCAGGATGAGGCACTCTA+CGG | 0.582573 | 7.1:-8365547 | None:intergenic |
| AGAGACTTCATTCTAATCCT+GGG | 0.586170 | 7.1:+8363532 | MS.gene22453:CDS |
| GCTAGGTCTTCTTGGGAGTG+TGG | 0.589971 | 7.1:+8363479 | MS.gene22453:intron |
| ATGACGCTTCCATGGCCCAT+CGG | 0.595557 | 7.1:-8362503 | None:intergenic |
| ACCTGCGACGGATTTCAGTA+CGG | 0.596489 | 7.1:-8363653 | None:intergenic |
| ACTGGTTGTGCATTGAAGCC+AGG | 0.597364 | 7.1:-8365563 | None:intergenic |
| GTTCCAAGGAGAACCAGGAA+TGG | 0.606980 | 7.1:-8362534 | None:intergenic |
| CCTCTAAATTGAACCTGCGA+CGG | 0.608381 | 7.1:-8363665 | None:intergenic |
| AGAGCAAACCATGGGTCGTG+GGG | 0.610620 | 7.1:+8365607 | MS.gene22453:CDS |
| TGTGCATTGAAGCCAGGATG+AGG | 0.621067 | 7.1:-8365557 | None:intergenic |
| AATAGGTCATGTGGGTGCTG+CGG | 0.621864 | 7.1:+8365413 | MS.gene22453:CDS |
| GAGGCATTTAATAGGTCATG+TGG | 0.624379 | 7.1:+8365404 | MS.gene22453:CDS |
| CAGGATGAGGCACTCTACGG+CGG | 0.641406 | 7.1:-8365544 | None:intergenic |
| CGGCTATGATATGAAAGCCA+GGG | 0.643919 | 7.1:-8363633 | None:intergenic |
| TTGCTTCCATACAGCACACA+AGG | 0.646064 | 7.1:-8363504 | None:intergenic |
| CCCATGGTTTGCTCTCCTGG+GGG | 0.646326 | 7.1:-8365599 | None:intergenic |
| TGAAAATCAGGGAAGTTGTG+AGG | 0.661588 | 7.1:+8365385 | MS.gene22453:intron |
| GCCAAGACAAGCGCAGACGG+AGG | 0.664318 | 7.1:-8362558 | None:intergenic |
| AGGCATTTAATAGGTCATGT+GGG | 0.681035 | 7.1:+8365405 | MS.gene22453:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTATTATAATAAAGTTT+AGG | + | chr7.1:8364088-8364107 | MS.gene22453:intron | 10.0% |
| !! | GATATATAAAAATTCTAATA+TGG | - | chr7.1:8363282-8363301 | None:intergenic | 10.0% |
| !! | TTTATATATCAAAATAACAT+TGG | + | chr7.1:8363292-8363311 | MS.gene22453:intron | 10.0% |
| !!! | TTGTTTTTTTGTATTTTATT+GGG | + | chr7.1:8363315-8363334 | MS.gene22453:intron | 10.0% |
| !! | AACTGTTTATAAAATGATTT+CGG | + | chr7.1:8364876-8364895 | MS.gene22453:intron | 15.0% |
| !! | ATATGAAAAAATTTGGATTA+TGG | - | chr7.1:8364852-8364871 | None:intergenic | 15.0% |
| !! | TCAATTATTGTATTAACTAT+TGG | + | chr7.1:8365355-8365374 | MS.gene22453:intron | 15.0% |
| !! | TTGTTAAATTATATATGAAG+AGG | - | chr7.1:8364693-8364712 | None:intergenic | 15.0% |
| !!! | AATTTTGTCTGTATTTTTTA+TGG | + | chr7.1:8365070-8365089 | MS.gene22453:intron | 15.0% |
| !!! | GTTGTTTTTTTGTATTTTAT+TGG | + | chr7.1:8363314-8363333 | MS.gene22453:intron | 15.0% |
| !!! | TGTTTTTTTGTATTTTATTG+GGG | + | chr7.1:8363316-8363335 | MS.gene22453:intron | 15.0% |
| !!! | TTTTTATCTAAATTTTGTTC+AGG | + | chr7.1:8365127-8365146 | MS.gene22453:intron | 15.0% |
| !! | AAAGTAATTCATAGATGAAA+AGG | + | chr7.1:8365213-8365232 | MS.gene22453:intron | 20.0% |
| !! | AAATAAAATAGCTGTATAGA+GGG | + | chr7.1:8364331-8364350 | MS.gene22453:intron | 20.0% |
| !! | ATATATGATATCCATTGTAA+CGG | - | chr7.1:8364965-8364984 | None:intergenic | 20.0% |
| !! | ATGAACATTATAAAATCGTT+TGG | - | chr7.1:8362918-8362937 | None:intergenic | 20.0% |
| !! | GTTATGCATATGAAAAAATT+TGG | - | chr7.1:8364859-8364878 | None:intergenic | 20.0% |
| !! | TAAAAAAATATCCCAATGAT+AGG | - | chr7.1:8365113-8365132 | None:intergenic | 20.0% |
| !! | TAGAAGAGAAATAAAAGAAA+GGG | - | chr7.1:8362627-8362646 | None:intergenic | 20.0% |
| !! | TATACTCTTTAAATATGAGA+AGG | + | chr7.1:8365328-8365347 | MS.gene22453:intron | 20.0% |
| !! | TTAGAAGAGAAATAAAAGAA+AGG | - | chr7.1:8362628-8362647 | None:intergenic | 20.0% |
| !! | TTTCATCTATGAATTACTTT+GGG | - | chr7.1:8365213-8365232 | None:intergenic | 20.0% |
| !!! | AATAATCAAACTTTTGAACA+CGG | - | chr7.1:8364153-8364172 | None:intergenic | 20.0% |
| !!! | ATTATAAAATCGTTTGGTTT+AGG | - | chr7.1:8362912-8362931 | None:intergenic | 20.0% |
| !!! | ATTTGTGAGTTGATAAAATT+GGG | + | chr7.1:8362684-8362703 | MS.gene22453:intron | 20.0% |
| !!! | CACATTTTAAATATTTTGAG+AGG | - | chr7.1:8364602-8364621 | None:intergenic | 20.0% |
| !!! | GAATTATTTTTCCTAACAAA+GGG | - | chr7.1:8362762-8362781 | None:intergenic | 20.0% |
| !!! | TATCATAAGAATTTTGACTT+TGG | + | chr7.1:8362826-8362845 | MS.gene22453:intron | 20.0% |
| !!! | TATTTGATATGTTTTCGATA+TGG | + | chr7.1:8363408-8363427 | MS.gene22453:intron | 20.0% |
| !!! | TGAATTATTTTTCCTAACAA+AGG | - | chr7.1:8362763-8362782 | None:intergenic | 20.0% |
| !!! | TTATAAAATCGTTTGGTTTA+GGG | - | chr7.1:8362911-8362930 | None:intergenic | 20.0% |
| !!! | TTTTCATCTATGAATTACTT+TGG | - | chr7.1:8365214-8365233 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAGGAGAATTTTA+GGG | + | chr7.1:8362709-8362728 | MS.gene22453:intron | 20.0% |
| ! | AATGTTGTAATGAAACTAGT+TGG | - | chr7.1:8363888-8363907 | None:intergenic | 25.0% |
| ! | ATCAAAAGTGAATTCTATTG+TGG | + | chr7.1:8362941-8362960 | MS.gene22453:intron | 25.0% |
| ! | ATGAAAATAGTCCTATCATT+GGG | + | chr7.1:8365099-8365118 | MS.gene22453:intron | 25.0% |
| ! | ATTCTATGTTTATTATGTGC+AGG | + | chr7.1:8362849-8362868 | MS.gene22453:intron | 25.0% |
| ! | GAAATAAAATAGCTGTATAG+AGG | + | chr7.1:8364330-8364349 | MS.gene22453:intron | 25.0% |
| ! | TAACTGTCATAAAAATACCA+CGG | + | chr7.1:8364257-8364276 | MS.gene22453:intron | 25.0% |
| ! | TACAGACAAAATTATCTTCA+TGG | - | chr7.1:8365063-8365082 | None:intergenic | 25.0% |
| ! | TATCATCACTACATAATAAG+AGG | - | chr7.1:8363713-8363732 | None:intergenic | 25.0% |
| ! | TCAAAATCCACAACATAATA+AGG | - | chr7.1:8362879-8362898 | None:intergenic | 25.0% |
| ! | TGAACAAACTGATATCAATT+AGG | + | chr7.1:8363120-8363139 | MS.gene22453:intron | 25.0% |
| ! | TTAAGCAAATACAAAGTTGA+TGG | - | chr7.1:8365171-8365190 | None:intergenic | 25.0% |
| !! | AAAAGCGGATAAATGTTTTA+GGG | - | chr7.1:8363436-8363455 | None:intergenic | 25.0% |
| !! | ATAATTTTACGTATTGTCCA+TGG | - | chr7.1:8362988-8363007 | None:intergenic | 25.0% |
| !! | CATATTTAAAGAGTATAACG+TGG | - | chr7.1:8365325-8365344 | None:intergenic | 25.0% |
| !! | TAAAAGCGGATAAATGTTTT+AGG | - | chr7.1:8363437-8363456 | None:intergenic | 25.0% |
| !! | TATCAGTTTGTTCAAAACAT+CGG | - | chr7.1:8363114-8363133 | None:intergenic | 25.0% |
| !!! | GATTATTTTATAATGCAGTG+CGG | + | chr7.1:8364166-8364185 | MS.gene22453:intron | 25.0% |
| !!! | GATTTGTGAGTTGATAAAAT+TGG | + | chr7.1:8362683-8362702 | MS.gene22453:intron | 25.0% |
| !!! | GGACTTGAAATATTTTTATG+TGG | + | chr7.1:8364897-8364916 | MS.gene22453:intron | 25.0% |
| !!! | GTCACACATTCATTTTTATA+GGG | + | chr7.1:8364524-8364543 | MS.gene22453:intron | 25.0% |
| !!! | GTTTTTTTGAGGAGAATTTT+AGG | + | chr7.1:8362708-8362727 | MS.gene22453:intron | 25.0% |
| !!! | TGTCACACATTCATTTTTAT+AGG | + | chr7.1:8364523-8364542 | MS.gene22453:intron | 25.0% |
| !!! | TTAAATATTTTGAGAGGATC+TGG | - | chr7.1:8364596-8364615 | None:intergenic | 25.0% |
| !!! | TTTGTGAGTTGATAAAATTG+GGG | + | chr7.1:8362685-8362704 | MS.gene22453:intron | 25.0% |
| AAAATACCACGGTGATAAAT+TGG | + | chr7.1:8364268-8364287 | MS.gene22453:intron | 30.0% | |
| AAATACCACGGTGATAAATT+GGG | + | chr7.1:8364269-8364288 | MS.gene22453:intron | 30.0% | |
| AACATATCAAATAGAGCAAG+AGG | - | chr7.1:8363401-8363420 | None:intergenic | 30.0% | |
| AATCACTGTTTGCATTATTC+TGG | + | chr7.1:8363564-8363583 | MS.gene22453:CDS | 30.0% | |
| AATTAGAACACTGAACTGAA+GGG | - | chr7.1:8364475-8364494 | None:intergenic | 30.0% | |
| ACAAAGTCAAGAAAACAACA+AGG | - | chr7.1:8364642-8364661 | None:intergenic | 30.0% | |
| ACAATTGAATTCCAGATTAG+TGG | + | chr7.1:8365239-8365258 | MS.gene22453:intron | 30.0% | |
| ACTGTTCAGAAAAATAGTTC+AGG | - | chr7.1:8364001-8364020 | None:intergenic | 30.0% | |
| AGGTTAACCTTATTATGTTG+TGG | + | chr7.1:8362869-8362888 | MS.gene22453:intron | 30.0% | |
| AGTAGACTAGTAGATGTTAA+TGG | - | chr7.1:8363176-8363195 | None:intergenic | 30.0% | |
| AGTTCAACCATAAGTAAAAG+CGG | - | chr7.1:8363451-8363470 | None:intergenic | 30.0% | |
| ATAAATTGGGGAAAATTCTC+TGG | + | chr7.1:8364282-8364301 | MS.gene22453:intron | 30.0% | |
| CATGAAAATAGTCCTATCAT+TGG | + | chr7.1:8365098-8365117 | MS.gene22453:intron | 30.0% | |
| CTGATTTCAAACTAATAGCT+CGG | + | chr7.1:8364119-8364138 | MS.gene22453:intron | 30.0% | |
| GAGAAATGTATAGTAGCATA+GGG | - | chr7.1:8364453-8364472 | None:intergenic | 30.0% | |
| GATAGAGAATAAAAAATGCG+AGG | - | chr7.1:8364818-8364837 | None:intergenic | 30.0% | |
| GGAAATAGACGAAAGAAAAT+GGG | + | chr7.1:8363337-8363356 | MS.gene22453:intron | 30.0% | |
| GTAATGAAACTAGTTGGATT+CGG | - | chr7.1:8363882-8363901 | None:intergenic | 30.0% | |
| TGGACCATAGAAAGATTATT+GGG | - | chr7.1:8365305-8365324 | None:intergenic | 30.0% | |
| TGGATATCATATATCAACTG+TGG | + | chr7.1:8364971-8364990 | MS.gene22453:intron | 30.0% | |
| TTATGACAGTTAGCTATTGA+TGG | - | chr7.1:8364249-8364268 | None:intergenic | 30.0% | |
| TTGATTGCAATCCATCTATA+TGG | + | chr7.1:8364493-8364512 | MS.gene22453:intron | 30.0% | |
| ! | AGTTTACACTTTGGTTCATT+CGG | - | chr7.1:8363847-8363866 | None:intergenic | 30.0% |
| ! | ATGAAGAGGTTTAAAGTACA+AGG | - | chr7.1:8364679-8364698 | None:intergenic | 30.0% |
| ! | CAATGATAGGACTATTTTCA+TGG | - | chr7.1:8365100-8365119 | None:intergenic | 30.0% |
| ! | CACGACTTTTCTCATATTTA+CGG | + | chr7.1:8363048-8363067 | MS.gene22453:intron | 30.0% |
| ! | TGAAGAGGTTTAAAGTACAA+GGG | - | chr7.1:8364678-8364697 | None:intergenic | 30.0% |
| ! | TTGTCTTTTGGTATTTGATC+TGG | + | chr7.1:8364569-8364588 | MS.gene22453:intron | 30.0% |
| !! | CATTTATCCGCTTTTACTTA+TGG | + | chr7.1:8363441-8363460 | MS.gene22453:intron | 30.0% |
| !! | TTGTGAGTTGATAAAATTGG+GGG | + | chr7.1:8362686-8362705 | MS.gene22453:intron | 30.0% |
| !!! | TAAAATTGGGGGTTTTTTTG+AGG | + | chr7.1:8362697-8362716 | MS.gene22453:intron | 30.0% |
| AAACTAAAACGACTCAGTAC+AGG | - | chr7.1:8365001-8365020 | None:intergenic | 35.0% | |
| AAGGGACATATTCTTGTACA+TGG | - | chr7.1:8362744-8362763 | None:intergenic | 35.0% | |
| AATACCACGGTGATAAATTG+GGG | + | chr7.1:8364270-8364289 | MS.gene22453:intron | 35.0% | |
| ACCATAGAAAGATTATTGGG+GGG | - | chr7.1:8365302-8365321 | None:intergenic | 35.0% | |
| AGAGACTTCATTCTAATCCT+GGG | + | chr7.1:8363532-8363551 | MS.gene22453:CDS | 35.0% | |
| AGGCATTTAATAGGTCATGT+GGG | + | chr7.1:8365405-8365424 | MS.gene22453:CDS | 35.0% | |
| ATTCTGGACTGTATGTGATT+GGG | + | chr7.1:8363580-8363599 | MS.gene22453:CDS | 35.0% | |
| CAAGAATATGTCCCTTTGTT+AGG | + | chr7.1:8362748-8362767 | MS.gene22453:intron | 35.0% | |
| CAATTAGAACACTGAACTGA+AGG | - | chr7.1:8364476-8364495 | None:intergenic | 35.0% | |
| GACCATAGAAAGATTATTGG+GGG | - | chr7.1:8365303-8365322 | None:intergenic | 35.0% | |
| GGACCATAGAAAGATTATTG+GGG | - | chr7.1:8365304-8365323 | None:intergenic | 35.0% | |
| GGAGAAATGTATAGTAGCAT+AGG | - | chr7.1:8364454-8364473 | None:intergenic | 35.0% | |
| GGGAAATAGACGAAAGAAAA+TGG | + | chr7.1:8363336-8363355 | MS.gene22453:intron | 35.0% | |
| GTGGACCATAGAAAGATTAT+TGG | - | chr7.1:8365306-8365325 | None:intergenic | 35.0% | |
| TATTCTGGACTGTATGTGAT+TGG | + | chr7.1:8363579-8363598 | MS.gene22453:CDS | 35.0% | |
| TCTCATATTTACGGCTAAGA+CGG | + | chr7.1:8363057-8363076 | MS.gene22453:intron | 35.0% | |
| TTTGAATAGTATCGTGTCGT+TGG | - | chr7.1:8363019-8363038 | None:intergenic | 35.0% | |
| ! | AAGACCTAATTTGCATGTTG+GGG | - | chr7.1:8364766-8364785 | None:intergenic | 35.0% |
| ! | AATCGTTTGGTTTAGGGTTA+TGG | - | chr7.1:8362905-8362924 | None:intergenic | 35.0% |
| ! | ACCTATTGTGATTTGTGATG+TGG | + | chr7.1:8363742-8363761 | MS.gene22453:intron | 35.0% |
| ! | AGAAGACCTAATTTGCATGT+TGG | - | chr7.1:8364768-8364787 | None:intergenic | 35.0% |
| ! | ATTGGTGATCCTTGAAAATC+AGG | + | chr7.1:8365373-8365392 | MS.gene22453:intron | 35.0% |
| ! | ATTTTACGTATTGTCCATGG+TGG | - | chr7.1:8362985-8363004 | None:intergenic | 35.0% |
| ! | CAAACTTTTGAACACGGTTT+GGG | - | chr7.1:8364147-8364166 | None:intergenic | 35.0% |
| ! | GAAGACCTAATTTGCATGTT+GGG | - | chr7.1:8364767-8364786 | None:intergenic | 35.0% |
| ! | GAAGTTGTGAGGCATTTAAT+AGG | + | chr7.1:8365396-8365415 | MS.gene22453:CDS | 35.0% |
| ! | GCACATGTACTTTTGTCTTT+TGG | + | chr7.1:8364557-8364576 | MS.gene22453:intron | 35.0% |
| ! | GCTTTTACTTATGGTTGAAC+TGG | + | chr7.1:8363450-8363469 | MS.gene22453:intron | 35.0% |
| ! | TCAAACTTTTGAACACGGTT+TGG | - | chr7.1:8364148-8364167 | None:intergenic | 35.0% |
| ! | TTGGTGATCCTTGAAAATCA+GGG | + | chr7.1:8365374-8365393 | MS.gene22453:intron | 35.0% |
| !! | TTTTAAGTACTAGTCCACGT+TGG | + | chr7.1:8363238-8363257 | MS.gene22453:intron | 35.0% |
| AAAATAGCTGTATAGAGGGC+AGG | + | chr7.1:8364335-8364354 | MS.gene22453:intron | 40.0% | |
| AATACCTTGCCCACTCAATA+CGG | - | chr7.1:8364219-8364238 | None:intergenic | 40.0% | |
| ACCAAACCAGTTGTTCAGTT+TGG | + | chr7.1:8363914-8363933 | MS.gene22453:intron | 40.0% | |
| ACCAAACTGAACAACTGGTT+TGG | - | chr7.1:8363918-8363937 | None:intergenic | 40.0% | |
| AGAACTAGCATATAGAGCGT+AGG | + | chr7.1:8364375-8364394 | MS.gene22453:intron | 40.0% | |
| AGACTGATGTCGTTCATCAT+TGG | + | chr7.1:8363202-8363221 | MS.gene22453:intron | 40.0% | |
| AGGTAAGTAAGTGGTGTCTA+AGG | + | chr7.1:8364395-8364414 | MS.gene22453:intron | 40.0% | |
| ATAGAAAGATTATTGGGGGG+GGG | - | chr7.1:8365299-8365318 | None:intergenic | 40.0% | |
| ATAGAGCGTAGGTAAGTAAG+TGG | + | chr7.1:8364386-8364405 | MS.gene22453:intron | 40.0% | |
| ATCTCATTGCTCCACTAATC+TGG | - | chr7.1:8365253-8365272 | None:intergenic | 40.0% | |
| CATAGAAAGATTATTGGGGG+GGG | - | chr7.1:8365300-8365319 | None:intergenic | 40.0% | |
| CATTCTAATCCTGGGACATT+TGG | + | chr7.1:8363540-8363559 | MS.gene22453:CDS | 40.0% | |
| CCATAGAAAGATTATTGGGG+GGG | - | chr7.1:8365301-8365320 | None:intergenic | 40.0% | |
| CGGAAGCTATTTGGAAAATG+AGG | + | chr7.1:8365433-8365452 | MS.gene22453:CDS | 40.0% | |
| CTTCAATGCACAACCAGTAT+TGG | + | chr7.1:8365568-8365587 | MS.gene22453:CDS | 40.0% | |
| GAGAGACTTCATTCTAATCC+TGG | + | chr7.1:8363531-8363550 | MS.gene22453:CDS | 40.0% | |
| GCCACATCACAAATCACAAT+AGG | - | chr7.1:8363746-8363765 | None:intergenic | 40.0% | |
| GGTCTTCTACTATGTTAAGC+TGG | + | chr7.1:8364780-8364799 | MS.gene22453:intron | 40.0% | |
| GTCAAGAAAACAACAAGGCA+AGG | - | chr7.1:8364637-8364656 | None:intergenic | 40.0% | |
| GTGATTGGGAATTCATGCTT+TGG | + | chr7.1:8363594-8363613 | MS.gene22453:CDS | 40.0% | |
| TCCAAGTAGTTCCGTTACAA+TGG | + | chr7.1:8364951-8364970 | MS.gene22453:intron | 40.0% | |
| TGAAAATCAGGGAAGTTGTG+AGG | + | chr7.1:8365385-8365404 | MS.gene22453:intron | 40.0% | |
| TGTGCTGTATGGAAGCAATA+TGG | + | chr7.1:8363509-8363528 | MS.gene22453:CDS | 40.0% | |
| TTGGGAATTCATGCTTTGGT+TGG | + | chr7.1:8363598-8363617 | MS.gene22453:CDS | 40.0% | |
| ! | AGTAGCATAGGGCATTCTAA+AGG | - | chr7.1:8364442-8364461 | None:intergenic | 40.0% |
| ! | CACAACTTCCCTGATTTTCA+AGG | - | chr7.1:8365385-8365404 | None:intergenic | 40.0% |
| ! | CAGTTAGCTATTGATGGTCA+TGG | - | chr7.1:8364243-8364262 | None:intergenic | 40.0% |
| ! | GAGGCATTTAATAGGTCATG+TGG | + | chr7.1:8365404-8365423 | MS.gene22453:CDS | 40.0% |
| ! | TCCATTGTAACGGAACTACT+TGG | - | chr7.1:8364955-8364974 | None:intergenic | 40.0% |
| ! | TGCTGCAAAAGTGATCGTTT+TGG | - | chr7.1:8362583-8362602 | None:intergenic | 40.0% |
| ! | TTTTCCCCAATTTATCACCG+TGG | - | chr7.1:8364277-8364296 | None:intergenic | 40.0% |
| !! | ACTGAACAACTGGTTTGGTT+CGG | - | chr7.1:8363913-8363932 | None:intergenic | 40.0% |
| !! | AGTATGAAGCGAAAGTGCTT+TGG | + | chr7.1:8363367-8363386 | MS.gene22453:intron | 40.0% |
| ACGGCTATGATATGAAAGCC+AGG | - | chr7.1:8363637-8363656 | None:intergenic | 45.0% | |
| AGTGCACCAAACTGAACAAC+TGG | - | chr7.1:8363923-8363942 | None:intergenic | 45.0% | |
| ATACCTTGCCCACTCAATAC+GGG | - | chr7.1:8364218-8364237 | None:intergenic | 45.0% | |
| CACTCCCCAACATGCAAATT+AGG | + | chr7.1:8364759-8364778 | MS.gene22453:intron | 45.0% | |
| CCACGTTGGACTGCTTATTA+AGG | + | chr7.1:8363252-8363271 | MS.gene22453:intron | 45.0% | |
| CCCCCCCAATAATCTTTCTA+TGG | + | chr7.1:8365298-8365317 | MS.gene22453:intron | 45.0% | |
| CCTCTAAATTGAACCTGCGA+CGG | - | chr7.1:8363668-8363687 | None:intergenic | 45.0% | |
| CCTTAATAAGCAGTCCAACG+TGG | - | chr7.1:8363255-8363274 | None:intergenic | 45.0% | |
| CGGCTATGATATGAAAGCCA+GGG | - | chr7.1:8363636-8363655 | None:intergenic | 45.0% | |
| CTGGTAACATGTACGCTACA+AGG | + | chr7.1:8364301-8364320 | MS.gene22453:intron | 45.0% | |
| GACAACAGCAGCCATATAGA+TGG | - | chr7.1:8364507-8364526 | None:intergenic | 45.0% | |
| GAGCGAACGAGTTTACACTT+TGG | - | chr7.1:8363856-8363875 | None:intergenic | 45.0% | |
| GATACGTGCTAGGTCTTCTT+GGG | + | chr7.1:8363472-8363491 | MS.gene22453:intron | 45.0% | |
| GATGAACGACATCAGTCTCT+TGG | - | chr7.1:8363200-8363219 | None:intergenic | 45.0% | |
| GCAGCGTGAACATTATGAGT+TGG | + | chr7.1:8365457-8365476 | MS.gene22453:CDS | 45.0% | |
| GGGGGAATCATAACCAATAC+TGG | - | chr7.1:8365584-8365603 | None:intergenic | 45.0% | |
| GTCTAAGGAGTAGAGTACAG+AGG | + | chr7.1:8364410-8364429 | MS.gene22453:intron | 45.0% | |
| GTCTGTGCTCTTTGTCAAGA+AGG | + | chr7.1:8365512-8365531 | MS.gene22453:CDS | 45.0% | |
| TAGAAAGATTATTGGGGGGG+GGG | - | chr7.1:8365298-8365317 | None:intergenic | 45.0% | |
| TGGCTGCGAAGAAGAATTGT+AGG | + | chr7.1:8363762-8363781 | MS.gene22453:intron | 45.0% | |
| TTCCAAGGAGAACCAGGAAT+GGG | - | chr7.1:8362536-8362555 | None:intergenic | 45.0% | |
| TTGCTTCCATACAGCACACA+AGG | - | chr7.1:8363507-8363526 | None:intergenic | 45.0% | |
| TTTGAACGCCCGTATTGAGT+GGG | + | chr7.1:8364207-8364226 | MS.gene22453:intron | 45.0% | |
| ! | ACACTTTGGTTCATTCGGCT+TGG | - | chr7.1:8363842-8363861 | None:intergenic | 45.0% |
| ! | GTAACGGAACTACTTGGACA+AGG | - | chr7.1:8364949-8364968 | None:intergenic | 45.0% |
| ! | TTTTGAACGCCCGTATTGAG+TGG | + | chr7.1:8364206-8364225 | MS.gene22453:intron | 45.0% |
| !! | GTATTGGTTATGATTCCCCC+AGG | + | chr7.1:8365584-8365603 | MS.gene22453:CDS | 45.0% |
| ACTGGTTGTGCATTGAAGCC+AGG | - | chr7.1:8365566-8365585 | None:intergenic | 50.0% | |
| AGAAAGATTATTGGGGGGGG+GGG | - | chr7.1:8365297-8365316 | None:intergenic | 50.0% | |
| AGGCAGGGGTGGTCAAAATT+TGG | + | chr7.1:8363802-8363821 | MS.gene22453:intron | 50.0% | |
| ATAGAGGGCAGGCAAGTAAG+TGG | + | chr7.1:8364346-8364365 | MS.gene22453:intron | 50.0% | |
| CAGTGATTGCCAAATGTCCC+AGG | - | chr7.1:8363552-8363571 | None:intergenic | 50.0% | |
| CCGTCGCAGGTTCAATTTAG+AGG | + | chr7.1:8363665-8363684 | MS.gene22453:CDS | 50.0% | |
| GGAGTAGAGTACAGAGGTCA+AGG | + | chr7.1:8364416-8364435 | MS.gene22453:intron | 50.0% | |
| GGATACGTGCTAGGTCTTCT+TGG | + | chr7.1:8363471-8363490 | MS.gene22453:intron | 50.0% | |
| GGTTGAACTGGATACGTGCT+AGG | + | chr7.1:8363462-8363481 | MS.gene22453:intron | 50.0% | |
| GTTCCAAGGAGAACCAGGAA+TGG | - | chr7.1:8362537-8362556 | None:intergenic | 50.0% | |
| GTTGGAATTGTCTTGCACCC+TGG | + | chr7.1:8363616-8363635 | MS.gene22453:CDS | 50.0% | |
| TGTGCATTGAAGCCAGGATG+AGG | - | chr7.1:8365560-8365579 | None:intergenic | 50.0% | |
| ! | AATAGGTCATGTGGGTGCTG+CGG | + | chr7.1:8365413-8365432 | MS.gene22453:CDS | 50.0% |
| ! | ACCTGCGACGGATTTCAGTA+CGG | - | chr7.1:8363656-8363675 | None:intergenic | 50.0% |
| AAAGATTATTGGGGGGGGGG+GGG | - | chr7.1:8365295-8365314 | None:intergenic | 55.0% | |
| AGAGCAAACCATGGGTCGTG+GGG | + | chr7.1:8365607-8365626 | MS.gene22453:CDS | 55.0% | |
| GAAAGATTATTGGGGGGGGG+GGG | - | chr7.1:8365296-8365315 | None:intergenic | 55.0% | |
| GAGAGCAAACCATGGGTCGT+GGG | + | chr7.1:8365606-8365625 | MS.gene22453:CDS | 55.0% | |
| GAGGAGTTCCAAGGAGAACC+AGG | - | chr7.1:8362542-8362561 | None:intergenic | 55.0% | |
| GCTAGGTCTTCTTGGGAGTG+TGG | + | chr7.1:8363479-8363498 | MS.gene22453:intron | 55.0% | |
| GTGGCTCCTTGTGTGCTGTA+TGG | + | chr7.1:8363498-8363517 | MS.gene22453:CDS | 55.0% | |
| TTGGCCAAGACAAGCGCAGA+CGG | - | chr7.1:8362564-8362583 | None:intergenic | 55.0% | |
| TTGTGGACCTCCTTCGTACG+TGG | + | chr7.1:8362958-8362977 | MS.gene22453:intron | 55.0% | |
| ! | AGCCAGGATGAGGCACTCTA+CGG | - | chr7.1:8365550-8365569 | None:intergenic | 55.0% |
| ! | AGCCCATTCCTGGTTCTCCT+TGG | + | chr7.1:8362531-8362550 | MS.gene22453:CDS | 55.0% |
| ! | TGGGTGCTGCGGAAGCTATT+TGG | + | chr7.1:8365424-8365443 | MS.gene22453:CDS | 55.0% |
| !! | ACCCATGGTTTGCTCTCCTG+GGG | - | chr7.1:8365603-8365622 | None:intergenic | 55.0% |
| !! | ATGGGCCATGGAAGCGTCAT+GGG | + | chr7.1:8362506-8362525 | MS.gene22453:CDS | 55.0% |
| !! | GACCCATGGTTTGCTCTCCT+GGG | - | chr7.1:8365604-8365623 | None:intergenic | 55.0% |
| AAGATTATTGGGGGGGGGGG+GGG | - | chr7.1:8365294-8365313 | None:intergenic | 60.0% | |
| ACCAGAAGCCCTGAGAGGCA+GGG | + | chr7.1:8363787-8363806 | MS.gene22453:intron | 60.0% | |
| ACGCCCGTATTGAGTGGGCA+AGG | + | chr7.1:8364212-8364231 | MS.gene22453:intron | 60.0% | |
| AGGTGACCAGAAGCCCTGAG+AGG | + | chr7.1:8363782-8363801 | MS.gene22453:intron | 60.0% | |
| CCCCCAGGAGAGCAAACCAT+GGG | + | chr7.1:8365599-8365618 | MS.gene22453:CDS | 60.0% | |
| CCTTCGTACGTGGTCCACCA+TGG | + | chr7.1:8362968-8362987 | MS.gene22453:intron | 60.0% | |
| GCCGTACTGAAATCCGTCGC+AGG | + | chr7.1:8363652-8363671 | MS.gene22453:CDS | 60.0% | |
| GCTGACCCATGACGCTTCCA+TGG | - | chr7.1:8362514-8362533 | None:intergenic | 60.0% | |
| GGAGAGCAAACCATGGGTCG+TGG | + | chr7.1:8365605-8365624 | MS.gene22453:CDS | 60.0% | |
| GTCATGGGTCAGCCCATTCC+TGG | + | chr7.1:8362521-8362540 | MS.gene22453:CDS | 60.0% | |
| TCCCCCAGGAGAGCAAACCA+TGG | + | chr7.1:8365598-8365617 | MS.gene22453:CDS | 60.0% | |
| TCCTCCGTCTGCGCTTGTCT+TGG | + | chr7.1:8362557-8362576 | MS.gene22453:CDS | 60.0% | |
| TTGACCACCCCTGCCTCTCA+GGG | - | chr7.1:8363798-8363817 | None:intergenic | 60.0% | |
| TTTGACCACCCCTGCCTCTC+AGG | - | chr7.1:8363799-8363818 | None:intergenic | 60.0% | |
| ! | CAGGATGAGGCACTCTACGG+CGG | - | chr7.1:8365547-8365566 | None:intergenic | 60.0% |
| ! | TGGTGGACCACGTACGAAGG+AGG | - | chr7.1:8362968-8362987 | None:intergenic | 60.0% |
| !! | CCATGGTGGACCACGTACGA+AGG | - | chr7.1:8362971-8362990 | None:intergenic | 60.0% |
| !! | CCCATGGTTTGCTCTCCTGG+GGG | - | chr7.1:8365602-8365621 | None:intergenic | 60.0% |
| !! | CGACCCATGGTTTGCTCTCC+TGG | - | chr7.1:8365605-8365624 | None:intergenic | 60.0% |
| AGATTATTGGGGGGGGGGGG+GGG | - | chr7.1:8365293-8365312 | None:intergenic | 65.0% | |
| CCAGAAGCCCTGAGAGGCAG+GGG | + | chr7.1:8363788-8363807 | MS.gene22453:intron | 65.0% | |
| GACCAGAAGCCCTGAGAGGC+AGG | + | chr7.1:8363786-8363805 | MS.gene22453:intron | 65.0% | |
| GCCAAGACAAGCGCAGACGG+AGG | - | chr7.1:8362561-8362580 | None:intergenic | 65.0% | |
| GCGCAGACGGAGGAGTTCCA+AGG | - | chr7.1:8362551-8362570 | None:intergenic | 65.0% | |
| ! | CGCCGTAGAGTGCCTCATCC+TGG | + | chr7.1:8365545-8365564 | MS.gene22453:CDS | 65.0% |
| ATTATTGGGGGGGGGGGGGG+GGG | - | chr7.1:8365291-8365310 | None:intergenic | 70.0% | |
| CCCCTGCCTCTCAGGGCTTC+TGG | - | chr7.1:8363791-8363810 | None:intergenic | 70.0% | |
| GAAGCCCTGAGAGGCAGGGG+TGG | + | chr7.1:8363791-8363810 | MS.gene22453:intron | 70.0% | |
| GATTATTGGGGGGGGGGGGG+GGG | - | chr7.1:8365292-8365311 | None:intergenic | 70.0% | |
| TTATTGGGGGGGGGGGGGGG+GGG | - | chr7.1:8365290-8365309 | None:intergenic | 75.0% | |
| ! | TATTGGGGGGGGGGGGGGGG+GGG | - | chr7.1:8365289-8365308 | None:intergenic | 80.0% |
| ! | ATTGGGGGGGGGGGGGGGGG+GGG | - | chr7.1:8365288-8365307 | None:intergenic | 85.0% |
| ! | GGGGGGGGGGGGGGGCAGAA+AGG | - | chr7.1:8365279-8365298 | None:intergenic | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | - | chr7.1:8365287-8365306 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 8362506 | 8365634 | 8362506 | ID=MS.gene22453 |
| chr7.1 | mRNA | 8362506 | 8365634 | 8362506 | ID=MS.gene22453.t1;Parent=MS.gene22453 |
| chr7.1 | exon | 8362506 | 8362617 | 8362506 | ID=MS.gene22453.t1.exon1;Parent=MS.gene22453.t1 |
| chr7.1 | CDS | 8362506 | 8362617 | 8362506 | ID=cds.MS.gene22453.t1;Parent=MS.gene22453.t1 |
| chr7.1 | exon | 8363484 | 8363686 | 8363484 | ID=MS.gene22453.t1.exon2;Parent=MS.gene22453.t1 |
| chr7.1 | CDS | 8363484 | 8363686 | 8363484 | ID=cds.MS.gene22453.t1;Parent=MS.gene22453.t1 |
| chr7.1 | exon | 8365395 | 8365634 | 8365395 | ID=MS.gene22453.t1.exon3;Parent=MS.gene22453.t1 |
| chr7.1 | CDS | 8365395 | 8365634 | 8365395 | ID=cds.MS.gene22453.t1;Parent=MS.gene22453.t1 |
| Gene Sequence |
| Protein sequence |
