Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22571.t1 | XP_013453418.1 | 96.3 | 382 | 9 | 1 | 48 | 429 | 56 | 432 | 5.80E-195 | 690.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22571.t1 | Q8VYY4 | 63.9 | 374 | 125 | 4 | 53 | 419 | 33 | 403 | 1.1e-122 | 441.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22571.t1 | A0A072UCV8 | 96.3 | 382 | 9 | 1 | 48 | 429 | 56 | 432 | 4.2e-195 | 690.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22571 | MS.gene036870 | PPI |
| MS.gene038718 | MS.gene22571 | PPI |
| MS.gene22571 | MS.gene060557 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22571.t1 | MTR_5g011440 | 93.447 | 412 | 22 | 1 | 18 | 429 | 26 | 432 | 0.0 | 726 |
| MS.gene22571.t1 | MTR_5g011440 | 93.447 | 412 | 22 | 1 | 18 | 429 | 19 | 425 | 0.0 | 726 |
| MS.gene22571.t1 | MTR_5g011440 | 92.987 | 385 | 22 | 1 | 18 | 402 | 26 | 405 | 0.0 | 669 |
| MS.gene22571.t1 | MTR_5g011450 | 79.811 | 317 | 64 | 0 | 99 | 415 | 1 | 317 | 0.0 | 509 |
| MS.gene22571.t1 | MTR_7g053090 | 40.453 | 309 | 170 | 5 | 114 | 419 | 97 | 394 | 5.88e-62 | 206 |
| MS.gene22571.t1 | MTR_4g113090 | 36.102 | 313 | 189 | 5 | 108 | 420 | 97 | 398 | 4.94e-53 | 182 |
| MS.gene22571.t1 | MTR_2g073190 | 32.903 | 310 | 198 | 4 | 118 | 427 | 382 | 681 | 6.09e-40 | 152 |
| MS.gene22571.t1 | MTR_2g073070 | 37.445 | 227 | 136 | 3 | 201 | 427 | 20 | 240 | 1.33e-36 | 134 |
| MS.gene22571.t1 | MTR_2g078500 | 66.265 | 83 | 27 | 1 | 142 | 224 | 37 | 118 | 1.36e-30 | 114 |
| MS.gene22571.t1 | MTR_2g078490 | 66.667 | 66 | 21 | 1 | 141 | 206 | 342 | 406 | 1.71e-19 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22571.t1 | AT4G22840 | 63.228 | 378 | 129 | 4 | 53 | 423 | 33 | 407 | 2.31e-163 | 466 |
| MS.gene22571.t1 | AT4G12030 | 58.333 | 384 | 154 | 2 | 44 | 422 | 25 | 407 | 4.09e-152 | 437 |
| MS.gene22571.t1 | AT4G12030 | 65.190 | 316 | 110 | 0 | 107 | 422 | 1 | 316 | 6.26e-150 | 428 |
| MS.gene22571.t1 | AT4G12030 | 67.407 | 270 | 88 | 0 | 150 | 419 | 1 | 270 | 2.14e-130 | 377 |
| MS.gene22571.t1 | AT4G12030 | 67.407 | 270 | 88 | 0 | 150 | 419 | 1 | 270 | 2.14e-130 | 377 |
| MS.gene22571.t1 | AT4G12030 | 67.407 | 270 | 88 | 0 | 150 | 419 | 1 | 270 | 2.14e-130 | 377 |
| MS.gene22571.t1 | AT3G25410 | 39.088 | 307 | 177 | 5 | 114 | 419 | 112 | 409 | 1.08e-60 | 203 |
| MS.gene22571.t1 | AT2G26900 | 33.681 | 383 | 227 | 9 | 38 | 419 | 40 | 396 | 2.01e-55 | 189 |
| MS.gene22571.t1 | AT1G78560 | 29.925 | 401 | 252 | 8 | 28 | 427 | 29 | 401 | 2.21e-46 | 165 |
Find 100 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATACTTTGCACCTGCTTT+AGG | 0.188507 | 5.2:+4149407 | MS.gene22571:intron |
| GTCAACTGCTTCTGCTGTTT+TGG | 0.219751 | 5.2:+4149912 | MS.gene22571:CDS |
| CTCTTATTGCTTCTGCTCAT+TGG | 0.278315 | 5.2:+4149943 | MS.gene22571:CDS |
| ATTATTGCAGTAACTGTCTT+TGG | 0.279697 | 5.2:+4149563 | MS.gene22571:CDS |
| TTTGTTGTGAAGCCTCTTCT+TGG | 0.285277 | 5.2:+4149527 | MS.gene22571:CDS |
| GATACTTTGCACCTGCTTTA+GGG | 0.306509 | 5.2:+4149408 | MS.gene22571:intron |
| ATTATGTCTTTGATGGGATT+TGG | 0.331570 | 5.2:+4150964 | MS.gene22571:CDS |
| ACTTCATTGAGGCATTTAAT+AGG | 0.332847 | 5.2:+4149471 | MS.gene22571:CDS |
| AGAAGCTGCATACTAATATT+AGG | 0.341587 | 5.2:-4148232 | None:intergenic |
| TCTTATTGCTTCTGCTCATT+GGG | 0.352000 | 5.2:+4149944 | MS.gene22571:CDS |
| GGGTATGCCTCCTGCAATTT+CGG | 0.354537 | 5.2:+4150540 | MS.gene22571:CDS |
| TGGGAATTTACCGAAATTGC+AGG | 0.366222 | 5.2:-4150550 | None:intergenic |
| GATGTCATTACTATGCTTAA+TGG | 0.367163 | 5.2:-4149886 | None:intergenic |
| GTATTGGTGGCTTGTGTTAG+TGG | 0.378566 | 5.2:+4149814 | MS.gene22571:CDS |
| TGCTTAATGGTGCCATTTGT+GGG | 0.389039 | 5.2:-4149873 | None:intergenic |
| CGTTGTAGTGGCTTTACATC+AGG | 0.390378 | 5.2:-4150359 | None:intergenic |
| GAATGATTCGGTGTCGGGTC+GGG | 0.403998 | 5.2:-4148409 | None:intergenic |
| ATGCTTAATGGTGCCATTTG+TGG | 0.405738 | 5.2:-4149874 | None:intergenic |
| TAGACGGAAGAGTGATGATT+GGG | 0.419992 | 5.2:-4148137 | None:intergenic |
| AGACTGCCTATAGACGTAAA+AGG | 0.420084 | 5.2:+4149970 | MS.gene22571:CDS |
| AGTGTACTAGCAACGATTGC+AGG | 0.421902 | 5.2:-4149037 | None:intergenic |
| AGCACATTTCAGAGGAAGTC+TGG | 0.422299 | 5.2:-4148353 | None:intergenic |
| TTTGGTCTACCAACAGGAAT+AGG | 0.423456 | 5.2:+4149581 | MS.gene22571:CDS |
| CTTTAACATGGTTTACTACA+AGG | 0.424128 | 5.2:+4149083 | MS.gene22571:CDS |
| GCCTCCACTCTCCGTGTTGA+CGG | 0.424878 | 5.2:+4150187 | MS.gene22571:CDS |
| CTGTTGGCCTACTTCTAAAT+CGG | 0.425947 | 5.2:+4150034 | MS.gene22571:CDS |
| GACTGCAATTATGTCTTTGA+TGG | 0.426712 | 5.2:+4150957 | MS.gene22571:intron |
| AGAAGTAGGCCAACAGCAAT+AGG | 0.427037 | 5.2:-4150027 | None:intergenic |
| GAGAAGAATGATTCGGTGTC+GGG | 0.431370 | 5.2:-4148414 | None:intergenic |
| AACAAACTGGCCAAAGTAAC+CGG | 0.432343 | 5.2:-4149510 | None:intergenic |
| GAAATCGCCACCGGTTACTT+TGG | 0.435378 | 5.2:+4149500 | MS.gene22571:CDS |
| CATCTTCATCTTCATCACTC+TGG | 0.437509 | 5.2:-4148101 | None:intergenic |
| GACAGAAAACTTTGCTTCAC+CGG | 0.450309 | 5.2:-4148974 | None:intergenic |
| TTCTTTGAAGATCCAGTTGT+GGG | 0.455510 | 5.2:+4150520 | MS.gene22571:CDS |
| AATTCTACCGATTTAGAAGT+AGG | 0.461585 | 5.2:-4150041 | None:intergenic |
| GCAGGAGGCATACCCACAAC+TGG | 0.468143 | 5.2:-4150532 | None:intergenic |
| ACTGTCTTTGGTCTACCAAC+AGG | 0.470666 | 5.2:+4149575 | MS.gene22571:CDS |
| CATTAGCGTCGTACAGTGGT+GGG | 0.481741 | 5.2:-4148439 | None:intergenic |
| CATTTCTCACCTATTCCTGT+TGG | 0.482415 | 5.2:-4149590 | None:intergenic |
| CGAACAATTTCCTTTGAGAC+AGG | 0.483447 | 5.2:+4150380 | MS.gene22571:CDS |
| TGGGGTCAATTCAAGTGAAA+AGG | 0.486568 | 5.2:+4149448 | MS.gene22571:CDS |
| AAGGAAATTGTTCGTTGTAG+TGG | 0.486811 | 5.2:-4150371 | None:intergenic |
| GAAGAGGCTTCACAACAAAC+TGG | 0.490918 | 5.2:-4149523 | None:intergenic |
| GTAGACGGAAGAGTGATGAT+TGG | 0.492725 | 5.2:-4148138 | None:intergenic |
| TAACCGGTGGCGATTTCTGC+CGG | 0.496289 | 5.2:-4149494 | None:intergenic |
| TTGACGGCAGCTATCTGTGC+TGG | 0.506226 | 5.2:+4150203 | MS.gene22571:CDS |
| ACTGCAATTATGTCTTTGAT+GGG | 0.516372 | 5.2:+4150958 | MS.gene22571:CDS |
| ATCAGGCGCAGGGATGGTAT+TGG | 0.520885 | 5.2:+4149798 | MS.gene22571:intron |
| ATAGCTGGCTATATGCTAAG+TGG | 0.521600 | 5.2:+4150317 | MS.gene22571:CDS |
| GCAAAGTAGCCTCCTTGCCT+TGG | 0.521783 | 5.2:+4150483 | MS.gene22571:CDS |
| GTGGTGGTACCTATTGCTGT+TGG | 0.523359 | 5.2:+4150018 | MS.gene22571:CDS |
| CGGGTCGGGTTGGTGAGAAT+CGG | 0.531942 | 5.2:-4148395 | None:intergenic |
| GTAAACCATGTTAAAGAAGG+TGG | 0.532077 | 5.2:-4149076 | None:intergenic |
| CACTCAACATTAAGAGCAAG+TGG | 0.538447 | 5.2:-4150230 | None:intergenic |
| GATTCGGTGTCGGGTCGGGT+TGG | 0.538982 | 5.2:-4148405 | None:intergenic |
| AGAATGATTCGGTGTCGGGT+CGG | 0.540212 | 5.2:-4148410 | None:intergenic |
| GTAGTAAACCATGTTAAAGA+AGG | 0.543231 | 5.2:-4149079 | None:intergenic |
| GGTGGGAAGTTTGAATGCAA+AGG | 0.543981 | 5.2:-4148211 | None:intergenic |
| GCAACAAGATAGAAATTCCA+AGG | 0.546255 | 5.2:-4150265 | None:intergenic |
| TAAAACAGATATCCAAGAAG+AGG | 0.547296 | 5.2:-4149539 | None:intergenic |
| CATTGAGGCATTTAATAGGC+CGG | 0.551828 | 5.2:+4149475 | MS.gene22571:CDS |
| GCCTATAGACGTAAAAGGAA+TGG | 0.559133 | 5.2:+4149975 | MS.gene22571:CDS |
| TGAGAAGAATGATTCGGTGT+CGG | 0.559195 | 5.2:-4148415 | None:intergenic |
| TGAATGCAAAGGAATTGAGA+AGG | 0.560009 | 5.2:-4148200 | None:intergenic |
| GTGAGAATCGGAGAAGTTCG+TGG | 0.561447 | 5.2:-4148383 | None:intergenic |
| AGGCGCAGGGATGGTATTGG+TGG | 0.562527 | 5.2:+4149801 | MS.gene22571:intron |
| TCTTCCCACCTTCTTTAACA+TGG | 0.564423 | 5.2:+4149071 | MS.gene22571:CDS |
| GTTCTTTGAAGATCCAGTTG+TGG | 0.577808 | 5.2:+4150519 | MS.gene22571:CDS |
| TCATTAGCGTCGTACAGTGG+TGG | 0.578045 | 5.2:-4148440 | None:intergenic |
| AAATGAATCAGGCGCAGGGA+TGG | 0.579253 | 5.2:+4149792 | MS.gene22571:intron |
| TATAAAAGCTGACAAATGAA+AGG | 0.582419 | 5.2:-4150297 | None:intergenic |
| TGCAGTTGCAGTATCGTAGA+CGG | 0.584484 | 5.2:-4148153 | None:intergenic |
| GTGGGGTGAGAAGAATGATT+CGG | 0.586579 | 5.2:-4148421 | None:intergenic |
| AAAACTTGTACCTGTCTCAA+AGG | 0.587271 | 5.2:-4150390 | None:intergenic |
| GCTGCCGTCAACACGGAGAG+TGG | 0.594383 | 5.2:-4150191 | None:intergenic |
| TAAACCATGTTAAAGAAGGT+GGG | 0.594566 | 5.2:-4149075 | None:intergenic |
| AGCTGCATACTAATATTAGG+TGG | 0.598399 | 5.2:-4148229 | None:intergenic |
| AAGTGAAAAGGACTTCATTG+AGG | 0.599086 | 5.2:+4149460 | MS.gene22571:CDS |
| GAGTGTATTAAATCTCCCCT+TGG | 0.603743 | 5.2:+4150248 | MS.gene22571:CDS |
| CAACAAGATAGAAATTCCAA+GGG | 0.607845 | 5.2:-4150264 | None:intergenic |
| GAACTTATTAGCAAGAGCCA+AGG | 0.624774 | 5.2:-4150500 | None:intergenic |
| CGAATAGCATTGCAAATACG+AGG | 0.626785 | 5.2:-4150155 | None:intergenic |
| GCCGTCAACACGGAGAGTGG+AGG | 0.627500 | 5.2:-4150188 | None:intergenic |
| GCTGCATACTAATATTAGGT+GGG | 0.627684 | 5.2:-4148228 | None:intergenic |
| GTTTAGCATTACACAGATTG+TGG | 0.628061 | 5.2:+4149999 | MS.gene22571:CDS |
| TATTAGCAAGAGCCAAGGCA+AGG | 0.628931 | 5.2:-4150495 | None:intergenic |
| ATTAGCGTCGTACAGTGGTG+GGG | 0.636150 | 5.2:-4148438 | None:intergenic |
| GATGAAGCAGCACATTTCAG+AGG | 0.638965 | 5.2:-4148361 | None:intergenic |
| GGTGAAATGAATCAGGCGCA+GGG | 0.644484 | 5.2:+4149788 | MS.gene22571:intron |
| TAGCATTACACAGATTGTGG+TGG | 0.644972 | 5.2:+4150002 | MS.gene22571:CDS |
| GAATTTACCGAAATTGCAGG+AGG | 0.656389 | 5.2:-4150547 | None:intergenic |
| ACAGATAGCTGCCGTCAACA+CGG | 0.673704 | 5.2:-4150198 | None:intergenic |
| AGACGGAAGAGTGATGATTG+GGG | 0.677990 | 5.2:-4148136 | None:intergenic |
| ATGAGCAGAAGCAATAAGAG+TGG | 0.680286 | 5.2:-4149940 | None:intergenic |
| GTACTAGCAACGATTGCAGG+AGG | 0.690202 | 5.2:-4149034 | None:intergenic |
| AGGCCGGCAGAAATCGCCAC+CGG | 0.692344 | 5.2:+4149491 | MS.gene22571:CDS |
| TAGCAAGAGCCAAGGCAAGG+AGG | 0.692627 | 5.2:-4150492 | None:intergenic |
| GCTTTACATCAGGAGAATCG+CGG | 0.699620 | 5.2:-4150349 | None:intergenic |
| AAACTGGCCAAAGTAACCGG+TGG | 0.716656 | 5.2:-4149507 | None:intergenic |
| AACAAGATAGAAATTCCAAG+GGG | 0.741788 | 5.2:-4150263 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATTAACCAAGTTA+AGG | - | chr5.2:4148763-4148782 | None:intergenic | 15.0% |
| !! | TTGTTATATTGAAATATAAG+TGG | + | chr5.2:4150919-4150938 | MS.gene22571:intron | 15.0% |
| !!! | CTTAAAATTATCTTTTGTTA+TGG | + | chr5.2:4148701-4148720 | MS.gene22571:intron | 15.0% |
| !! | AGAGTTACTTAAATAACATA+TGG | - | chr5.2:4150446-4150465 | None:intergenic | 20.0% |
| !! | ATTTGTTTGATAGATGAAAA+TGG | - | chr5.2:4150418-4150437 | None:intergenic | 20.0% |
| !! | TCTTAATTAGCATGAATTAA+GGG | + | chr5.2:4148510-4148529 | MS.gene22571:intron | 20.0% |
| !! | TTCTTAATTAGCATGAATTA+AGG | + | chr5.2:4148509-4148528 | MS.gene22571:intron | 20.0% |
| !!! | AAATGCAAAGTTATTGTTTT+TGG | + | chr5.2:4150787-4150806 | MS.gene22571:intron | 20.0% |
| !!! | AAATTATGCTACTTTTCTAA+CGG | + | chr5.2:4149849-4149868 | MS.gene22571:CDS | 20.0% |
| !!! | TATATTTTCATTCTAATACG+AGG | - | chr5.2:4148482-4148501 | None:intergenic | 20.0% |
| ! | AGTATTAGTGTTTCCTTTAA+GGG | + | chr5.2:4150092-4150111 | MS.gene22571:intron | 25.0% |
| ! | CAATAACAATTATATACCCT+GGG | + | chr5.2:4150588-4150607 | MS.gene22571:intron | 25.0% |
| ! | TATAAAAGCTGACAAATGAA+AGG | - | chr5.2:4150300-4150319 | None:intergenic | 25.0% |
| ! | TTACTTAAATAACATATGGC+AGG | - | chr5.2:4150442-4150461 | None:intergenic | 25.0% |
| ! | TTTAGTCAAATTTATGCCTT+CGG | - | chr5.2:4149722-4149741 | None:intergenic | 25.0% |
| ! | TTTGTGTTTCAGATATTAGT+AGG | - | chr5.2:4149307-4149326 | None:intergenic | 25.0% |
| !! | ATCTACTTTCTAACTTTTTG+AGG | + | chr5.2:4149767-4149786 | MS.gene22571:intron | 25.0% |
| !! | TGTGTATTTTCTAGATGAAT+TGG | + | chr5.2:4149108-4149127 | MS.gene22571:intron | 25.0% |
| AAACACGGTCAAACTTAAAA+AGG | - | chr5.2:4149658-4149677 | None:intergenic | 30.0% | |
| AACAAGATAGAAATTCCAAG+GGG | - | chr5.2:4150266-4150285 | None:intergenic | 30.0% | |
| AATATTAGAAAGAGAGCTAG+CGG | + | chr5.2:4149743-4149762 | MS.gene22571:intron | 30.0% | |
| AATTAACCAAGTTAAGGCTT+TGG | - | chr5.2:4148757-4148776 | None:intergenic | 30.0% | |
| ACTGCAATTATGTCTTTGAT+GGG | + | chr5.2:4150958-4150977 | MS.gene22571:CDS | 30.0% | |
| AGAAGCTGCATACTAATATT+AGG | - | chr5.2:4148235-4148254 | None:intergenic | 30.0% | |
| ATAATTACTACGTGATGTAC+TGG | + | chr5.2:4149383-4149402 | MS.gene22571:intron | 30.0% | |
| ATGCAAATGCAAATGCAAAA+TGG | + | chr5.2:4149266-4149285 | MS.gene22571:intron | 30.0% | |
| ATTATGTCTTTGATGGGATT+TGG | + | chr5.2:4150964-4150983 | MS.gene22571:CDS | 30.0% | |
| ATTATTGCAGTAACTGTCTT+TGG | + | chr5.2:4149563-4149582 | MS.gene22571:CDS | 30.0% | |
| ATTGGAGTCTAATCAGAATT+GGG | - | chr5.2:4150572-4150591 | None:intergenic | 30.0% | |
| CAACAAGATAGAAATTCCAA+GGG | - | chr5.2:4150267-4150286 | None:intergenic | 30.0% | |
| CAGTATTAGTGTTTCCTTTA+AGG | + | chr5.2:4150091-4150110 | MS.gene22571:intron | 30.0% | |
| CCAATAACAATTATATACCC+TGG | + | chr5.2:4150587-4150606 | MS.gene22571:intron | 30.0% | |
| CCAGGGTATATAATTGTTAT+TGG | - | chr5.2:4150590-4150609 | None:intergenic | 30.0% | |
| CTTTAACATGGTTTACTACA+AGG | + | chr5.2:4149083-4149102 | MS.gene22571:CDS | 30.0% | |
| GATGTCATTACTATGCTTAA+TGG | - | chr5.2:4149889-4149908 | None:intergenic | 30.0% | |
| GTAGTAAACCATGTTAAAGA+AGG | - | chr5.2:4149082-4149101 | None:intergenic | 30.0% | |
| TAAAACAGATATCCAAGAAG+AGG | - | chr5.2:4149542-4149561 | None:intergenic | 30.0% | |
| TAAACCATGTTAAAGAAGGT+GGG | - | chr5.2:4149078-4149097 | None:intergenic | 30.0% | |
| TAAGAATACAACACCCTTAA+AGG | - | chr5.2:4150108-4150127 | None:intergenic | 30.0% | |
| TATTGGAGTCTAATCAGAAT+TGG | - | chr5.2:4150573-4150592 | None:intergenic | 30.0% | |
| ! | ACTTCATTGAGGCATTTAAT+AGG | + | chr5.2:4149471-4149490 | MS.gene22571:CDS | 30.0% |
| ! | GCATTTGCATTTGCATTTTA+AGG | - | chr5.2:4149262-4149281 | None:intergenic | 30.0% |
| !! | AATTCTACCGATTTAGAAGT+AGG | - | chr5.2:4150044-4150063 | None:intergenic | 30.0% |
| !! | GCATTTTAGTGAAATTGATC+TGG | + | chr5.2:4149165-4149184 | MS.gene22571:intron | 30.0% |
| !! | GTTTTGATATGGAACAAAAG+TGG | + | chr5.2:4150991-4151010 | MS.gene22571:CDS | 30.0% |
| !! | TTTTTGGTCAAGAAAGTAGA+AGG | + | chr5.2:4150803-4150822 | MS.gene22571:intron | 30.0% |
| !!! | CTGTGCTTTTTTTTTCAGTT+CGG | + | chr5.2:4148311-4148330 | MS.gene22571:intron | 30.0% |
| !!! | GATTTGGTCTTGTTTTGATA+TGG | + | chr5.2:4150980-4150999 | MS.gene22571:CDS | 30.0% |
| !!! | TCAAGTGATTTTTAGCAATG+AGG | + | chr5.2:4149188-4149207 | MS.gene22571:intron | 30.0% |
| !!! | TTTTTGAGGTGAAATGAATC+AGG | + | chr5.2:4149781-4149800 | MS.gene22571:intron | 30.0% |
| AAAACTTGTACCTGTCTCAA+AGG | - | chr5.2:4150393-4150412 | None:intergenic | 35.0% | |
| AACATCAAAAACCCTAAAGC+AGG | - | chr5.2:4149422-4149441 | None:intergenic | 35.0% | |
| AACTCTTCATTGCAAACACA+CGG | + | chr5.2:4150735-4150754 | MS.gene22571:intron | 35.0% | |
| AAGGAAATTGTTCGTTGTAG+TGG | - | chr5.2:4150374-4150393 | None:intergenic | 35.0% | |
| AAGTGAAAAGGACTTCATTG+AGG | + | chr5.2:4149460-4149479 | MS.gene22571:CDS | 35.0% | |
| AATCAAAAACCAAGTAACGC+AGG | + | chr5.2:4148914-4148933 | MS.gene22571:intron | 35.0% | |
| AGCTGCATACTAATATTAGG+TGG | - | chr5.2:4148232-4148251 | None:intergenic | 35.0% | |
| ATATTAGAAAGAGAGCTAGC+GGG | + | chr5.2:4149744-4149763 | MS.gene22571:intron | 35.0% | |
| GAATAGGTGAGAAATGAGAA+TGG | + | chr5.2:4149597-4149616 | MS.gene22571:intron | 35.0% | |
| GACTGCAATTATGTCTTTGA+TGG | + | chr5.2:4150957-4150976 | MS.gene22571:intron | 35.0% | |
| GCAACAAGATAGAAATTCCA+AGG | - | chr5.2:4150268-4150287 | None:intergenic | 35.0% | |
| GCTGCATACTAATATTAGGT+GGG | - | chr5.2:4148231-4148250 | None:intergenic | 35.0% | |
| GTAAACCATGTTAAAGAAGG+TGG | - | chr5.2:4149079-4149098 | None:intergenic | 35.0% | |
| GTTTAGCATTACACAGATTG+TGG | + | chr5.2:4149999-4150018 | MS.gene22571:CDS | 35.0% | |
| TCTTATTGCTTCTGCTCATT+GGG | + | chr5.2:4149944-4149963 | MS.gene22571:CDS | 35.0% | |
| TGAATGCAAAGGAATTGAGA+AGG | - | chr5.2:4148203-4148222 | None:intergenic | 35.0% | |
| TGCAGACACATACATATAGT+CGG | - | chr5.2:4150657-4150676 | None:intergenic | 35.0% | |
| TTTACACCAAAGCCTTAACT+TGG | + | chr5.2:4148748-4148767 | MS.gene22571:intron | 35.0% | |
| ! | ACCATTCCTTTTACGTCTAT+AGG | - | chr5.2:4149979-4149998 | None:intergenic | 35.0% |
| ! | CATTTGTCAGCTTTTATAGC+TGG | + | chr5.2:4150302-4150321 | MS.gene22571:CDS | 35.0% |
| ! | GGTTTTTGATGTTTGCAGTT+GGG | + | chr5.2:4149429-4149448 | MS.gene22571:CDS | 35.0% |
| ! | GTTTTTGATGTTTGCAGTTG+GGG | + | chr5.2:4149430-4149449 | MS.gene22571:CDS | 35.0% |
| ! | TTCTTTGAAGATCCAGTTGT+GGG | + | chr5.2:4150520-4150539 | MS.gene22571:CDS | 35.0% |
| ! | TTTAAGTTTGACCGTGTTTC+TGG | + | chr5.2:4149659-4149678 | MS.gene22571:intron | 35.0% |
| !! | TAAGCTGTTTTCGTAAGTTG+TGG | - | chr5.2:4148589-4148608 | None:intergenic | 35.0% |
| !!! | GCTTTTTTTTTCAGTTCGGT+TGG | + | chr5.2:4148315-4148334 | MS.gene22571:intron | 35.0% |
| !!! | TTTTTTTTCAGTTCGGTTGG+CGG | + | chr5.2:4148318-4148337 | MS.gene22571:intron | 35.0% |
| AACAAACTGGCCAAAGTAAC+CGG | - | chr5.2:4149513-4149532 | None:intergenic | 40.0% | |
| AGACTGCCTATAGACGTAAA+AGG | + | chr5.2:4149970-4149989 | MS.gene22571:CDS | 40.0% | |
| AGATACTTTGCACCTGCTTT+AGG | + | chr5.2:4149407-4149426 | MS.gene22571:intron | 40.0% | |
| AGTGCTTATGTGTTCAGGTA+AGG | + | chr5.2:4148808-4148827 | MS.gene22571:intron | 40.0% | |
| ATAGCTGGCTATATGCTAAG+TGG | + | chr5.2:4150317-4150336 | MS.gene22571:CDS | 40.0% | |
| ATGAGCAGAAGCAATAAGAG+TGG | - | chr5.2:4149943-4149962 | None:intergenic | 40.0% | |
| CACTCAACATTAAGAGCAAG+TGG | - | chr5.2:4150233-4150252 | None:intergenic | 40.0% | |
| CATCTTCATCTTCATCACTC+TGG | - | chr5.2:4148104-4148123 | None:intergenic | 40.0% | |
| CATTTCTCACCTATTCCTGT+TGG | - | chr5.2:4149593-4149612 | None:intergenic | 40.0% | |
| CCAGAACTAATCCAGAAACA+CGG | - | chr5.2:4149673-4149692 | None:intergenic | 40.0% | |
| CGAATAGCATTGCAAATACG+AGG | - | chr5.2:4150158-4150177 | None:intergenic | 40.0% | |
| CTAGATGACTAGATAAGAGC+TGG | - | chr5.2:4149222-4149241 | None:intergenic | 40.0% | |
| CTCTTATTGCTTCTGCTCAT+TGG | + | chr5.2:4149943-4149962 | MS.gene22571:CDS | 40.0% | |
| GAACTTATTAGCAAGAGCCA+AGG | - | chr5.2:4150503-4150522 | None:intergenic | 40.0% | |
| GAATTTACCGAAATTGCAGG+AGG | - | chr5.2:4150550-4150569 | None:intergenic | 40.0% | |
| GACAGAAAACTTTGCTTCAC+CGG | - | chr5.2:4148977-4148996 | None:intergenic | 40.0% | |
| GAGTAAGTGCTTATGTGTTC+AGG | + | chr5.2:4148803-4148822 | MS.gene22571:intron | 40.0% | |
| GAGTGTATTAAATCTCCCCT+TGG | + | chr5.2:4150248-4150267 | MS.gene22571:CDS | 40.0% | |
| GATACTTTGCACCTGCTTTA+GGG | + | chr5.2:4149408-4149427 | MS.gene22571:intron | 40.0% | |
| GCCTATAGACGTAAAAGGAA+TGG | + | chr5.2:4149975-4149994 | MS.gene22571:CDS | 40.0% | |
| GGTTTATTACCTCGTTGTGT+TGG | + | chr5.2:4150763-4150782 | MS.gene22571:intron | 40.0% | |
| GTCAAATTTATGCCTTCGGT+CGG | - | chr5.2:4149718-4149737 | None:intergenic | 40.0% | |
| GTTTCATTTCTTTCCTCAGC+CGG | + | chr5.2:4148955-4148974 | MS.gene22571:intron | 40.0% | |
| TAGACGGAAGAGTGATGATT+GGG | - | chr5.2:4148140-4148159 | None:intergenic | 40.0% | |
| TAGCATTACACAGATTGTGG+TGG | + | chr5.2:4150002-4150021 | MS.gene22571:CDS | 40.0% | |
| TCTTCCCACCTTCTTTAACA+TGG | + | chr5.2:4149071-4149090 | MS.gene22571:CDS | 40.0% | |
| TGGGAATTTACCGAAATTGC+AGG | - | chr5.2:4150553-4150572 | None:intergenic | 40.0% | |
| TGGGGTCAATTCAAGTGAAA+AGG | + | chr5.2:4149448-4149467 | MS.gene22571:CDS | 40.0% | |
| TTAAGTTTCTAACCGACCGA+AGG | + | chr5.2:4149703-4149722 | MS.gene22571:intron | 40.0% | |
| TTTGGTCTACCAACAGGAAT+AGG | + | chr5.2:4149581-4149600 | MS.gene22571:CDS | 40.0% | |
| ! | AAGGCTTTGGTGTAAAATGC+AGG | - | chr5.2:4148744-4148763 | None:intergenic | 40.0% |
| ! | CATTGAGGCATTTAATAGGC+CGG | + | chr5.2:4149475-4149494 | MS.gene22571:CDS | 40.0% |
| ! | CTGTTGGCCTACTTCTAAAT+CGG | + | chr5.2:4150034-4150053 | MS.gene22571:CDS | 40.0% |
| ! | GGGTTTTTGATGTTTGCAGT+TGG | + | chr5.2:4149428-4149447 | MS.gene22571:CDS | 40.0% |
| ! | GTTCTTTGAAGATCCAGTTG+TGG | + | chr5.2:4150519-4150538 | MS.gene22571:CDS | 40.0% |
| ! | TTGCATTTTCCAACACAACG+AGG | - | chr5.2:4150775-4150794 | None:intergenic | 40.0% |
| ! | TTTGTTGTGAAGCCTCTTCT+TGG | + | chr5.2:4149527-4149546 | MS.gene22571:CDS | 40.0% |
| !! | ATGCTTAATGGTGCCATTTG+TGG | - | chr5.2:4149877-4149896 | None:intergenic | 40.0% |
| !! | CGAACAATTTCCTTTGAGAC+AGG | + | chr5.2:4150380-4150399 | MS.gene22571:CDS | 40.0% |
| !! | TGAGAAGAATGATTCGGTGT+CGG | - | chr5.2:4148418-4148437 | None:intergenic | 40.0% |
| !! | TGCTTAATGGTGCCATTTGT+GGG | - | chr5.2:4149876-4149895 | None:intergenic | 40.0% |
| !! | TTTTCTAACGGACCCACAAA+TGG | + | chr5.2:4149861-4149880 | MS.gene22571:CDS | 40.0% |
| ACTGTCTTTGGTCTACCAAC+AGG | + | chr5.2:4149575-4149594 | MS.gene22571:CDS | 45.0% | |
| AGAAGTAGGCCAACAGCAAT+AGG | - | chr5.2:4150030-4150049 | None:intergenic | 45.0% | |
| AGACGGAAGAGTGATGATTG+GGG | - | chr5.2:4148139-4148158 | None:intergenic | 45.0% | |
| AGCACATTTCAGAGGAAGTC+TGG | - | chr5.2:4148356-4148375 | None:intergenic | 45.0% | |
| AGTAACTCTTCTCCAACTGC+AGG | + | chr5.2:4150457-4150476 | MS.gene22571:intron | 45.0% | |
| AGTGTACTAGCAACGATTGC+AGG | - | chr5.2:4149040-4149059 | None:intergenic | 45.0% | |
| CAAGAACGCTTATACTCCCA+GGG | - | chr5.2:4150607-4150626 | None:intergenic | 45.0% | |
| CAATCATGTCCTGCGTTACT+TGG | - | chr5.2:4148926-4148945 | None:intergenic | 45.0% | |
| CATTGCAAACACACGGCATT+GGG | + | chr5.2:4150742-4150761 | MS.gene22571:intron | 45.0% | |
| CTACTTTGCATTCCTGCAGT+TGG | - | chr5.2:4150472-4150491 | None:intergenic | 45.0% | |
| GAAGAGGCTTCACAACAAAC+TGG | - | chr5.2:4149526-4149545 | None:intergenic | 45.0% | |
| GATGAAGCAGCACATTTCAG+AGG | - | chr5.2:4148364-4148383 | None:intergenic | 45.0% | |
| GCTTTACATCAGGAGAATCG+CGG | - | chr5.2:4150352-4150371 | None:intergenic | 45.0% | |
| GGTGGGAAGTTTGAATGCAA+AGG | - | chr5.2:4148214-4148233 | None:intergenic | 45.0% | |
| GTAGACGGAAGAGTGATGAT+TGG | - | chr5.2:4148141-4148160 | None:intergenic | 45.0% | |
| GTGGGGTGAGAAGAATGATT+CGG | - | chr5.2:4148424-4148443 | None:intergenic | 45.0% | |
| TATTAGCAAGAGCCAAGGCA+AGG | - | chr5.2:4150498-4150517 | None:intergenic | 45.0% | |
| TCAAGAACGCTTATACTCCC+AGG | - | chr5.2:4150608-4150627 | None:intergenic | 45.0% | |
| TCATTGCAAACACACGGCAT+TGG | + | chr5.2:4150741-4150760 | MS.gene22571:intron | 45.0% | |
| TGATCATTAGCGTCGTACAG+TGG | - | chr5.2:4148446-4148465 | None:intergenic | 45.0% | |
| TGCAGTTGCAGTATCGTAGA+CGG | - | chr5.2:4148156-4148175 | None:intergenic | 45.0% | |
| ! | CGTTGTAGTGGCTTTACATC+AGG | - | chr5.2:4150362-4150381 | None:intergenic | 45.0% |
| ! | GTATTGGTGGCTTGTGTTAG+TGG | + | chr5.2:4149814-4149833 | MS.gene22571:CDS | 45.0% |
| !! | CCGTGTTTCTGGATTAGTTC+TGG | + | chr5.2:4149670-4149689 | MS.gene22571:intron | 45.0% |
| !! | GAGAAGAATGATTCGGTGTC+GGG | - | chr5.2:4148417-4148436 | None:intergenic | 45.0% |
| !! | GTCAACTGCTTCTGCTGTTT+TGG | + | chr5.2:4149912-4149931 | MS.gene22571:CDS | 45.0% |
| !! | TAGTAATTATAATAAATTAA+TGG | - | chr5.2:4149373-4149392 | None:intergenic | 5.0% |
| AAACTGGCCAAAGTAACCGG+TGG | - | chr5.2:4149510-4149529 | None:intergenic | 50.0% | |
| AAATGAATCAGGCGCAGGGA+TGG | + | chr5.2:4149792-4149811 | MS.gene22571:intron | 50.0% | |
| ACAGATAGCTGCCGTCAACA+CGG | - | chr5.2:4150201-4150220 | None:intergenic | 50.0% | |
| ACGGAGAGTGGAGGCAAAAA+TGG | - | chr5.2:4150182-4150201 | None:intergenic | 50.0% | |
| AGGTGAAATGAATCAGGCGC+AGG | + | chr5.2:4149787-4149806 | MS.gene22571:intron | 50.0% | |
| ATTAGCGTCGTACAGTGGTG+GGG | - | chr5.2:4148441-4148460 | None:intergenic | 50.0% | |
| CATTAGCGTCGTACAGTGGT+GGG | - | chr5.2:4148442-4148461 | None:intergenic | 50.0% | |
| GGGTATGCCTCCTGCAATTT+CGG | + | chr5.2:4150540-4150559 | MS.gene22571:CDS | 50.0% | |
| GGTGAAATGAATCAGGCGCA+GGG | + | chr5.2:4149788-4149807 | MS.gene22571:intron | 50.0% | |
| GTACTAGCAACGATTGCAGG+AGG | - | chr5.2:4149037-4149056 | None:intergenic | 50.0% | |
| GTGAGAATCGGAGAAGTTCG+TGG | - | chr5.2:4148386-4148405 | None:intergenic | 50.0% | |
| GTGGTGGTACCTATTGCTGT+TGG | + | chr5.2:4150018-4150037 | MS.gene22571:CDS | 50.0% | |
| TCATTAGCGTCGTACAGTGG+TGG | - | chr5.2:4148443-4148462 | None:intergenic | 50.0% | |
| ! | AAACTTTGCTTCACCGGCTG+AGG | - | chr5.2:4148971-4148990 | None:intergenic | 50.0% |
| ! | GAAATCGCCACCGGTTACTT+TGG | + | chr5.2:4149500-4149519 | MS.gene22571:CDS | 50.0% |
| !! | AGAATGATTCGGTGTCGGGT+CGG | - | chr5.2:4148413-4148432 | None:intergenic | 50.0% |
| !! | TTTTTCAGTTCGGTTGGCGG+TGG | + | chr5.2:4148321-4148340 | MS.gene22571:intron | 50.0% |
| ATCAGGCGCAGGGATGGTAT+TGG | + | chr5.2:4149798-4149817 | MS.gene22571:intron | 55.0% | |
| GCAAAGTAGCCTCCTTGCCT+TGG | + | chr5.2:4150483-4150502 | MS.gene22571:CDS | 55.0% | |
| TAACCGGTGGCGATTTCTGC+CGG | - | chr5.2:4149497-4149516 | None:intergenic | 55.0% | |
| TAGCAAGAGCCAAGGCAAGG+AGG | - | chr5.2:4150495-4150514 | None:intergenic | 55.0% | |
| TTGACGGCAGCTATCTGTGC+TGG | + | chr5.2:4150203-4150222 | MS.gene22571:CDS | 55.0% | |
| !! | GAATGATTCGGTGTCGGGTC+GGG | - | chr5.2:4148412-4148431 | None:intergenic | 55.0% |
| GCCTCCACTCTCCGTGTTGA+CGG | + | chr5.2:4150187-4150206 | MS.gene22571:CDS | 60.0% | |
| ! | AGGCGCAGGGATGGTATTGG+TGG | + | chr5.2:4149801-4149820 | MS.gene22571:intron | 60.0% |
| ! | GCAGGAGGCATACCCACAAC+TGG | - | chr5.2:4150535-4150554 | None:intergenic | 60.0% |
| !! | CGGGTCGGGTTGGTGAGAAT+CGG | - | chr5.2:4148398-4148417 | None:intergenic | 60.0% |
| AGGCCGGCAGAAATCGCCAC+CGG | + | chr5.2:4149491-4149510 | MS.gene22571:CDS | 65.0% | |
| GCCGTCAACACGGAGAGTGG+AGG | - | chr5.2:4150191-4150210 | None:intergenic | 65.0% | |
| GCTGCCGTCAACACGGAGAG+TGG | - | chr5.2:4150194-4150213 | None:intergenic | 65.0% | |
| !! | GATTCGGTGTCGGGTCGGGT+TGG | - | chr5.2:4148408-4148427 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 4148070 | 4151041 | 4148070 | ID=MS.gene22571 |
| chr5.2 | mRNA | 4148070 | 4151041 | 4148070 | ID=MS.gene22571.t1;Parent=MS.gene22571 |
| chr5.2 | exon | 4148070 | 4148241 | 4148070 | ID=MS.gene22571.t1.exon1;Parent=MS.gene22571.t1 |
| chr5.2 | CDS | 4148070 | 4148241 | 4148070 | ID=cds.MS.gene22571.t1;Parent=MS.gene22571.t1 |
| chr5.2 | exon | 4148329 | 4148447 | 4148329 | ID=MS.gene22571.t1.exon2;Parent=MS.gene22571.t1 |
| chr5.2 | CDS | 4148329 | 4148447 | 4148329 | ID=cds.MS.gene22571.t1;Parent=MS.gene22571.t1 |
| chr5.2 | exon | 4148974 | 4149104 | 4148974 | ID=MS.gene22571.t1.exon3;Parent=MS.gene22571.t1 |
| chr5.2 | CDS | 4148974 | 4149104 | 4148974 | ID=cds.MS.gene22571.t1;Parent=MS.gene22571.t1 |
| chr5.2 | exon | 4149409 | 4149602 | 4149409 | ID=MS.gene22571.t1.exon4;Parent=MS.gene22571.t1 |
| chr5.2 | CDS | 4149409 | 4149602 | 4149409 | ID=cds.MS.gene22571.t1;Parent=MS.gene22571.t1 |
| chr5.2 | exon | 4149803 | 4150055 | 4149803 | ID=MS.gene22571.t1.exon5;Parent=MS.gene22571.t1 |
| chr5.2 | CDS | 4149803 | 4150055 | 4149803 | ID=cds.MS.gene22571.t1;Parent=MS.gene22571.t1 |
| chr5.2 | exon | 4150148 | 4150401 | 4150148 | ID=MS.gene22571.t1.exon6;Parent=MS.gene22571.t1 |
| chr5.2 | CDS | 4150148 | 4150401 | 4150148 | ID=cds.MS.gene22571.t1;Parent=MS.gene22571.t1 |
| chr5.2 | exon | 4150479 | 4150561 | 4150479 | ID=MS.gene22571.t1.exon7;Parent=MS.gene22571.t1 |
| chr5.2 | CDS | 4150479 | 4150561 | 4150479 | ID=cds.MS.gene22571.t1;Parent=MS.gene22571.t1 |
| chr5.2 | exon | 4150958 | 4151041 | 4150958 | ID=MS.gene22571.t1.exon8;Parent=MS.gene22571.t1 |
| chr5.2 | CDS | 4150958 | 4151041 | 4150958 | ID=cds.MS.gene22571.t1;Parent=MS.gene22571.t1 |
| Gene Sequence |
| Protein sequence |
