AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22636

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22636.t1 MTR_3g052480 94.837 368 17 1 1 366 1 368 0.0 720
MS.gene22636.t1 MTR_3g052490 83.967 368 55 3 1 366 1 366 0.0 631
MS.gene22636.t1 MTR_3g052580 73.164 354 92 3 11 364 8 358 0.0 542
MS.gene22636.t1 MTR_3g052580 73.164 354 92 3 11 364 9 359 0.0 542
MS.gene22636.t1 MTR_5g093090 67.397 365 115 2 1 365 1 361 0.0 513
MS.gene22636.t1 MTR_5g093090 65.646 294 97 2 1 294 1 290 3.66e-139 398
MS.gene22636.t1 MTR_5g093090 66.190 210 68 1 1 210 1 207 3.04e-93 278
MS.gene22636.t1 MTR_8g074570 38.333 360 207 8 15 364 16 370 1.65e-76 240
MS.gene22636.t1 MTR_1g079540 36.997 373 218 7 1 366 1 363 1.88e-75 238
MS.gene22636.t1 MTR_4g122200 36.096 374 217 9 1 363 3 365 1.12e-73 233
MS.gene22636.t1 MTR_7g116570 35.695 367 215 8 11 366 10 366 5.48e-73 231
MS.gene22636.t1 MTR_1g024890 37.430 358 205 7 17 366 18 364 2.62e-72 229
MS.gene22636.t1 MTR_3g005650 39.437 355 199 8 16 366 15 357 3.65e-72 229
MS.gene22636.t1 MTR_8g079050 38.400 375 205 12 10 366 10 376 1.55e-71 228
MS.gene22636.t1 MTR_2g033920 37.330 367 212 7 6 364 10 366 4.20e-71 226
MS.gene22636.t1 MTR_2g033930 36.628 344 200 8 28 364 29 361 4.77e-71 226
MS.gene22636.t1 MTR_8g074560 37.069 348 203 8 25 363 25 365 6.59e-69 221
MS.gene22636.t1 MTR_0565s0010 37.067 375 214 10 1 366 4 365 1.63e-68 219
MS.gene22636.t1 MTR_4g035353 34.670 349 213 6 24 366 24 363 1.79e-68 219
MS.gene22636.t1 MTR_1g069175 35.756 344 204 8 31 366 33 367 2.76e-67 217
MS.gene22636.t1 MTR_1g079530 36.364 352 201 8 22 366 20 355 2.03e-66 214
MS.gene22636.t1 MTR_3g024510 36.066 366 212 10 13 366 15 370 3.63e-66 214
MS.gene22636.t1 MTR_8g087890 36.968 376 202 12 8 366 6 363 3.96e-66 213
MS.gene22636.t1 MTR_5g078210 34.808 339 198 7 20 349 14 338 9.65e-66 212
MS.gene22636.t1 MTR_4g108690 33.438 320 200 6 33 347 29 340 1.06e-65 213
MS.gene22636.t1 MTR_4g019880 35.946 370 215 8 7 366 9 366 1.87e-65 212
MS.gene22636.t1 MTR_7g116500 34.985 343 206 7 31 366 33 365 6.10e-65 211
MS.gene22636.t1 MTR_8g074580 32.452 416 225 9 2 365 7 418 2.19e-64 211
MS.gene22636.t1 MTR_3g435540 34.375 320 197 5 33 347 25 336 4.68e-64 208
MS.gene22636.t1 MTR_7g008060 33.693 371 213 10 3 366 8 352 4.91e-64 208
MS.gene22636.t1 MTR_3g098270 33.600 375 230 9 1 364 1 367 5.50e-64 209
MS.gene22636.t1 MTR_7g116510 33.514 370 224 7 7 366 1 358 4.67e-63 206
MS.gene22636.t1 MTR_7g116520 34.884 344 205 8 31 366 34 366 5.01e-63 206
MS.gene22636.t1 MTR_6g021530 34.247 365 221 11 12 366 7 362 2.06e-61 201
MS.gene22636.t1 MTR_2g044100 35.345 348 194 9 31 363 43 374 3.61e-61 202
MS.gene22636.t1 MTR_2g084585 35.072 345 208 9 10 347 8 343 6.04e-61 200
MS.gene22636.t1 MTR_3g005660 34.091 352 211 9 25 366 30 370 2.17e-57 191
MS.gene22636.t1 MTR_4g087985 33.148 359 213 8 11 350 16 366 4.45e-57 190
MS.gene22636.t1 MTR_1g025780 34.844 353 209 8 7 347 9 352 5.26e-57 190
MS.gene22636.t1 MTR_2g461580 33.889 360 210 11 11 364 11 348 1.15e-56 189
MS.gene22636.t1 MTR_5g009100 32.353 340 212 7 33 364 48 377 3.89e-56 188
MS.gene22636.t1 MTR_2g015080 34.473 351 206 9 7 339 8 352 9.88e-56 187
MS.gene22636.t1 MTR_1g025720 36.562 320 189 7 30 344 36 346 3.51e-55 185
MS.gene22636.t1 MTR_3g023220 35.756 344 196 10 26 364 28 351 5.85e-55 184
MS.gene22636.t1 MTR_8g075230 35.135 333 197 9 19 343 24 345 1.10e-54 184
MS.gene22636.t1 MTR_1g025760 33.149 362 218 11 1 347 42 394 2.36e-53 181
MS.gene22636.t1 MTR_4g056280 35.494 324 194 8 30 347 29 343 4.85e-53 179
MS.gene22636.t1 MTR_8g014910 33.432 338 208 10 18 347 18 346 5.00e-53 179
MS.gene22636.t1 MTR_3g021460 33.611 360 211 12 11 364 11 348 1.27e-52 178
MS.gene22636.t1 MTR_5g074270 34.365 323 189 9 28 339 30 340 7.14e-52 176
MS.gene22636.t1 MTR_5g084770 33.535 331 194 10 29 347 26 342 7.21e-52 176
MS.gene22636.t1 MTR_3g464730 32.565 347 210 11 11 347 10 342 1.20e-51 176
MS.gene22636.t1 MTR_1g025700 34.483 319 197 6 30 344 49 359 2.64e-51 175
MS.gene22636.t1 MTR_5g084750 32.239 335 208 9 13 337 8 333 2.81e-51 174
MS.gene22636.t1 MTR_0009s0250 34.743 331 188 11 25 348 27 336 1.47e-50 172
MS.gene22636.t1 MTR_5g022630 33.434 332 202 9 27 349 39 360 3.55e-50 172
MS.gene22636.t1 MTR_2g033920 36.486 296 171 6 6 294 10 295 7.19e-50 170
MS.gene22636.t1 MTR_2g100620 33.531 337 205 9 21 347 18 345 1.70e-49 170
MS.gene22636.t1 MTR_3g082830 32.024 331 208 9 24 347 31 351 1.97e-49 170
MS.gene22636.t1 MTR_5g022640 34.091 352 200 12 10 343 16 353 2.45e-49 170
MS.gene22636.t1 MTR_8g087870 31.283 374 210 13 11 366 7 351 2.71e-49 169
MS.gene22636.t1 MTR_5g078210 34.859 284 163 6 20 294 14 284 3.81e-49 168
MS.gene22636.t1 MTR_1g025680 35.385 325 189 7 29 344 32 344 6.95e-49 171
MS.gene22636.t1 MTR_5g084790 33.333 324 199 9 26 342 27 340 6.13e-48 166
MS.gene22636.t1 MTR_4g056160 32.012 328 205 9 29 347 25 343 1.15e-46 162
MS.gene22636.t1 MTR_3g114120 34.049 326 189 10 30 344 46 356 1.52e-46 162
MS.gene22636.t1 MTR_2g017925 31.351 370 220 12 8 364 5 353 2.58e-46 162
MS.gene22636.t1 MTR_8g022790 31.700 347 212 9 27 366 33 361 3.66e-46 161
MS.gene22636.t1 MTR_2g017965 30.749 374 225 12 7 364 4 359 4.45e-46 162
MS.gene22636.t1 MTR_8g031390 32.368 380 218 11 6 364 1 362 1.21e-45 160
MS.gene22636.t1 MTR_8g031430 33.243 367 214 10 11 363 13 362 1.57e-45 160
MS.gene22636.t1 MTR_3g114090 33.019 318 194 7 30 339 35 341 2.27e-45 159
MS.gene22636.t1 MTR_8g031420 32.877 365 216 11 11 363 13 360 2.39e-45 159
MS.gene22636.t1 MTR_2g017875 31.534 352 213 11 25 366 28 361 3.25e-44 156
MS.gene22636.t1 MTR_8g075220 31.532 333 204 10 30 349 39 360 1.17e-43 155
MS.gene22636.t1 MTR_8g075200 30.556 324 210 8 30 347 40 354 2.12e-43 155
MS.gene22636.t1 MTR_8g022810 30.539 334 200 10 31 349 41 357 3.82e-43 154
MS.gene22636.t1 MTR_5g083040 29.305 331 210 8 28 345 29 348 7.75e-43 152
MS.gene22636.t1 MTR_2g017915 31.267 371 205 15 7 364 4 337 8.63e-43 152
MS.gene22636.t1 MTR_2g017955 29.839 372 230 12 7 364 4 358 1.27e-42 152
MS.gene22636.t1 MTR_8g031400 31.063 367 222 10 11 363 13 362 2.46e-40 146
MS.gene22636.t1 MTR_8g031390 33.538 325 182 10 6 314 1 307 1.96e-36 134
MS.gene22636.t1 MTR_1g079590 41.341 179 92 4 5 183 11 176 3.02e-36 131
MS.gene22636.t1 MTR_1g025910 31.529 314 190 10 36 339 41 339 1.93e-35 133
MS.gene22636.t1 MTR_7g033150 29.526 359 192 13 31 350 35 371 2.79e-32 125
MS.gene22636.t1 MTR_1g030268 30.571 350 195 13 30 350 39 369 5.84e-32 124
MS.gene22636.t1 MTR_6g007090 30.548 347 196 12 30 350 38 365 4.35e-31 121
MS.gene22636.t1 MTR_8g022810 27.795 331 160 10 31 349 41 304 8.32e-31 119
MS.gene22636.t1 MTR_1g030340 28.934 394 209 18 12 360 18 385 1.37e-30 120
MS.gene22636.t1 MTR_1g030275 30.747 348 197 11 30 350 38 368 1.58e-30 120
MS.gene22636.t1 MTR_7g033155 28.610 367 196 14 31 350 38 385 2.21e-30 120
MS.gene22636.t1 MTR_7g033165 28.691 359 205 14 30 357 32 370 4.66e-30 119
MS.gene22636.t1 MTR_0127s0040 30.705 241 151 9 136 366 4 238 6.15e-29 112
MS.gene22636.t1 MTR_1g060490 27.711 332 199 12 29 347 35 338 3.39e-28 113
MS.gene22636.t1 MTR_3g438030 30.747 348 204 14 31 356 30 362 1.27e-26 109
MS.gene22636.t1 MTR_6g007100 27.222 360 214 13 15 350 13 348 2.21e-26 108
MS.gene22636.t1 MTR_3g069780 30.971 381 219 17 1 356 1 362 2.41e-26 108
MS.gene22636.t1 MTR_7g116870 25.562 356 215 13 31 357 33 367 2.42e-26 108
MS.gene22636.t1 MTR_6g007095 28.000 350 201 13 30 350 40 367 2.74e-26 110
MS.gene22636.t1 MTR_6g007095 28.446 341 193 14 35 350 369 683 1.10e-23 103
MS.gene22636.t1 MTR_1g030230 27.451 357 211 12 30 357 31 368 3.63e-26 108
MS.gene22636.t1 MTR_8g028160 29.050 358 192 15 31 350 36 369 4.70e-26 107
MS.gene22636.t1 MTR_5g087690 26.836 354 212 12 31 364 50 376 5.23e-26 107
MS.gene22636.t1 MTR_3g463960 28.940 349 202 14 31 351 44 374 8.76e-26 107
MS.gene22636.t1 MTR_3g463950 28.940 349 202 14 31 351 44 374 8.76e-26 107
MS.gene22636.t1 MTR_3g463970 28.940 349 202 14 31 351 44 374 8.76e-26 107
MS.gene22636.t1 MTR_3g463940 28.940 349 202 14 31 351 44 374 8.76e-26 107
MS.gene22636.t1 MTR_3g463930 28.531 354 204 14 31 351 44 381 9.92e-26 107
MS.gene22636.t1 MTR_2g087292 30.061 326 141 12 25 348 27 267 1.69e-25 104
MS.gene22636.t1 MTR_4g104240 28.021 389 217 16 3 357 8 367 3.35e-25 105
MS.gene22636.t1 MTR_8g038680 29.745 353 196 15 30 350 27 359 1.31e-24 103
MS.gene22636.t1 MTR_1g030220 28.852 357 192 16 31 350 40 371 1.98e-24 103
MS.gene22636.t1 MTR_7g104220 25.532 329 205 14 32 347 43 344 4.17e-24 102
MS.gene22636.t1 MTR_2g015580 28.406 345 208 13 31 351 47 376 4.32e-24 102
MS.gene22636.t1 MTR_2g015630 28.736 348 205 15 36 357 36 366 4.61e-24 102
MS.gene22636.t1 MTR_2g079090 28.919 370 209 17 10 351 2 345 1.16e-23 100
MS.gene22636.t1 MTR_1108s0010 29.245 212 133 5 141 347 3 202 1.43e-23 97.4
MS.gene22636.t1 MTR_4g036375 34.731 167 97 5 16 178 12 170 6.88e-23 95.1
MS.gene22636.t1 MTR_1g060500 27.108 332 203 15 32 347 41 349 8.00e-23 98.6
MS.gene22636.t1 MTR_2g018015 33.482 224 128 8 22 233 27 241 9.08e-23 97.4
MS.gene22636.t1 MTR_2g017925 29.237 236 149 7 136 364 26 250 9.08e-23 96.7
MS.gene22636.t1 MTR_1g030265 29.043 303 172 10 84 357 53 341 9.66e-23 98.2
MS.gene22636.t1 MTR_7g087190 27.198 364 216 14 30 360 42 389 1.46e-22 98.2
MS.gene22636.t1 MTR_7g113860 25.978 358 216 12 30 357 34 372 2.36e-22 97.4
MS.gene22636.t1 MTR_1g092690 26.849 365 206 17 3 337 8 341 2.94e-22 97.1
MS.gene22636.t1 MTR_7g111780 26.124 356 209 16 26 357 31 356 4.10e-22 96.7
MS.gene22636.t1 MTR_2g043980 28.418 373 213 14 1 351 7 347 5.90e-22 95.9
MS.gene22636.t1 MTR_1g082390 26.531 343 198 13 30 339 30 351 6.28e-22 96.3
MS.gene22636.t1 MTR_1g030268 29.508 305 171 12 30 309 39 324 7.28e-22 95.5
MS.gene22636.t1 MTR_1g092740 27.052 329 199 15 32 347 39 339 2.55e-21 94.0
MS.gene22636.t1 MTR_1g092750 27.410 332 199 14 20 337 29 332 2.58e-21 94.0
MS.gene22636.t1 MTR_1g092760 28.349 321 185 12 32 337 40 330 6.34e-21 92.8
MS.gene22636.t1 MTR_7g113860 25.419 358 218 12 30 357 28 366 1.31e-20 92.4
MS.gene22636.t1 MTR_7g033165 28.920 287 164 12 30 294 32 300 1.52e-20 91.3
MS.gene22636.t1 MTR_2g015650 28.609 381 221 18 1 351 1 360 2.48e-20 91.7
MS.gene22636.t1 MTR_8g089805 25.852 352 214 13 30 350 39 374 3.80e-20 91.3
MS.gene22636.t1 MTR_2g015590 28.919 370 217 19 16 357 14 365 6.10e-20 90.5
MS.gene22636.t1 MTR_1g079570 32.414 145 88 4 228 366 1 141 2.04e-19 84.3
MS.gene22636.t1 MTR_6g049220 47.872 94 43 2 30 123 29 116 4.57e-18 81.3
MS.gene22636.t1 MTR_5g074210 31.387 137 83 3 210 339 64 196 1.94e-17 80.9
MS.gene22636.t1 MTR_8g012540 28.662 314 170 14 30 314 27 315 6.96e-17 81.3
MS.gene22636.t1 MTR_7g111780 26.236 263 169 12 110 357 5 257 3.71e-16 78.2
MS.gene22636.t1 MTR_3g069520 28.533 375 220 18 12 356 4 360 7.78e-16 78.6
MS.gene22636.t1 MTR_3g448360 28.108 370 218 18 12 350 4 356 1.72e-15 77.4
MS.gene22636.t1 MTR_2g015670 27.457 346 196 15 31 351 31 346 8.65e-15 75.1
MS.gene22636.t1 MTR_4g036385 28.704 108 75 2 241 347 21 127 7.00e-13 65.9
MS.gene22636.t1 MTR_2g015590 28.425 292 171 14 16 284 14 290 3.14e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22636.t1 AT5G55050 52.212 339 158 3 30 365 38 375 4.21e-115 339
MS.gene22636.t1 AT3G50400 39.607 356 192 12 25 366 28 374 4.23e-73 232
MS.gene22636.t1 AT5G37690 37.231 325 181 7 33 348 29 339 3.68e-71 226
MS.gene22636.t1 AT5G08460 34.530 362 218 6 17 366 31 385 3.80e-68 219
MS.gene22636.t1 AT1G29660 36.740 362 208 10 15 366 14 364 7.24e-68 218
MS.gene22636.t1 AT5G18430 35.200 375 221 9 1 366 1 362 2.99e-66 214
MS.gene22636.t1 AT5G37690 36.615 325 175 8 33 348 29 331 5.42e-66 213
MS.gene22636.t1 AT4G28780 34.463 354 212 8 23 366 20 363 6.73e-66 213
MS.gene22636.t1 AT2G23540 37.752 347 192 10 31 363 48 384 4.00e-65 212
MS.gene22636.t1 AT3G04290 34.795 365 216 9 11 366 10 361 3.37e-64 209
MS.gene22636.t1 AT5G33370 34.694 343 207 7 31 366 30 362 2.01e-62 204
MS.gene22636.t1 AT1G29670 34.986 363 213 10 16 366 12 363 2.24e-61 201
MS.gene22636.t1 AT1G74460 34.513 339 207 6 15 347 7 336 9.10e-61 200
MS.gene22636.t1 AT1G33811 33.862 378 215 11 13 366 4 370 1.45e-60 199
MS.gene22636.t1 AT1G29670 34.986 363 213 10 16 366 80 431 1.49e-60 201
MS.gene22636.t1 AT1G71250 33.333 345 215 6 28 366 38 373 1.28e-59 197
MS.gene22636.t1 AT5G45670 34.574 376 216 11 7 366 1 362 1.66e-59 196
MS.gene22636.t1 AT4G10950 32.849 344 213 7 29 364 69 402 1.68e-59 197
MS.gene22636.t1 AT1G71691 33.918 342 211 7 29 366 53 383 3.64e-59 196
MS.gene22636.t1 AT4G18970 35.227 352 198 11 29 366 26 361 4.76e-58 192
MS.gene22636.t1 AT5G22810 36.311 347 200 11 12 347 14 350 1.52e-57 191
MS.gene22636.t1 AT4G18970 35.227 352 198 11 29 366 26 361 2.83e-57 192
MS.gene22636.t1 AT1G20120 35.077 325 194 8 30 347 77 391 3.52e-56 189
MS.gene22636.t1 AT4G10950 32.558 344 210 8 29 364 69 398 8.26e-56 188
MS.gene22636.t1 AT1G75890 35.045 331 195 8 27 348 43 362 8.32e-56 187
MS.gene22636.t1 AT3G53100 35.692 325 194 9 29 347 27 342 9.13e-56 186
MS.gene22636.t1 AT1G20132 35.000 340 201 10 27 359 57 383 1.20e-55 187
MS.gene22636.t1 AT1G75890 35.045 331 195 8 27 348 72 391 1.90e-55 187
MS.gene22636.t1 AT5G45960 34.700 317 188 9 31 337 47 354 2.96e-55 186
MS.gene22636.t1 AT5G42170 35.913 323 191 9 30 347 49 360 2.98e-55 186
MS.gene22636.t1 AT5G41890 32.787 366 219 9 16 363 16 372 2.29e-54 183
MS.gene22636.t1 AT5G03820 33.894 357 214 10 1 347 4 348 3.45e-54 182
MS.gene22636.t1 AT3G14820 33.967 368 209 14 1 354 1 348 4.78e-54 182
MS.gene22636.t1 AT5G15720 34.384 349 204 10 30 366 29 364 9.52e-54 181
MS.gene22636.t1 AT5G03820 33.894 357 214 10 1 347 32 376 1.00e-53 182
MS.gene22636.t1 AT1G75890 33.819 343 196 8 27 348 43 375 1.27e-53 181
MS.gene22636.t1 AT5G03810 32.011 353 223 8 1 347 3 344 2.45e-53 180
MS.gene22636.t1 AT1G75880 35.474 327 194 8 30 349 51 367 5.77e-52 177
MS.gene22636.t1 AT2G42990 33.235 340 208 9 17 348 14 342 1.08e-51 176
MS.gene22636.t1 AT1G06990 33.123 317 196 7 30 339 36 343 1.12e-51 176
MS.gene22636.t1 AT5G40990 33.511 376 216 12 12 366 11 373 1.61e-51 176
MS.gene22636.t1 AT1G75880 34.862 327 197 7 30 349 51 368 2.34e-51 176
MS.gene22636.t1 AT3G16370 34.650 329 199 9 26 347 25 344 5.02e-51 174
MS.gene22636.t1 AT1G58430 33.237 346 202 11 13 339 7 342 2.24e-50 172
MS.gene22636.t1 AT2G40250 33.538 325 191 9 31 342 36 348 7.66e-50 171
MS.gene22636.t1 AT1G75900 33.231 325 203 7 30 349 42 357 1.03e-49 171
MS.gene22636.t1 AT1G53920 33.929 336 187 10 31 350 48 364 1.19e-49 171
MS.gene22636.t1 AT2G03980 35.185 324 187 9 30 344 42 351 1.28e-49 171
MS.gene22636.t1 AT2G03980 35.185 324 187 9 30 344 42 351 1.28e-49 171
MS.gene22636.t1 AT2G03980 35.185 324 187 9 30 344 42 351 1.28e-49 171
MS.gene22636.t1 AT2G03980 35.185 324 187 9 30 344 42 351 1.28e-49 171
MS.gene22636.t1 AT1G71120 31.714 350 209 10 26 364 26 356 3.30e-49 169
MS.gene22636.t1 AT2G30310 33.019 318 196 9 30 339 33 341 4.89e-49 169
MS.gene22636.t1 AT1G75920 34.111 343 189 11 18 347 16 334 1.44e-48 167
MS.gene22636.t1 AT2G04570 31.988 347 217 9 11 349 8 343 2.13e-48 167
MS.gene22636.t1 AT1G20130 34.639 332 191 11 25 341 178 498 4.79e-48 170
MS.gene22636.t1 AT1G20130 34.639 332 191 11 25 341 198 518 4.83e-48 170
MS.gene22636.t1 AT2G24560 33.750 320 191 10 30 339 33 341 1.37e-47 165
MS.gene22636.t1 AT1G53990 30.890 382 224 12 7 366 1 364 1.55e-47 165
MS.gene22636.t1 AT4G26790 32.628 331 198 12 28 347 26 342 4.37e-47 164
MS.gene22636.t1 AT4G26790 32.628 331 198 12 28 347 26 342 4.37e-47 164
MS.gene22636.t1 AT1G59406 33.731 335 201 9 30 358 29 348 6.09e-47 163
MS.gene22636.t1 AT1G59030 33.731 335 201 9 30 358 29 348 6.09e-47 163
MS.gene22636.t1 AT1G58725 33.731 335 201 9 30 358 29 348 6.09e-47 163
MS.gene22636.t1 AT2G30220 32.500 320 199 7 30 341 32 342 2.03e-46 162
MS.gene22636.t1 AT3G14225 30.659 349 217 9 31 366 37 373 6.70e-46 161
MS.gene22636.t1 AT3G14225 30.286 350 221 8 31 366 37 377 7.17e-46 161
MS.gene22636.t1 AT2G31540 33.234 334 199 11 30 350 34 356 8.25e-46 160
MS.gene22636.t1 AT4G30140 33.141 347 199 14 25 364 27 347 9.30e-46 160
MS.gene22636.t1 AT2G19060 32.194 351 203 13 24 364 23 348 1.36e-45 159
MS.gene22636.t1 AT5G45950 31.447 318 205 7 31 346 40 346 6.04e-45 158
MS.gene22636.t1 AT1G58520 33.433 335 195 10 30 358 29 341 6.77e-45 157
MS.gene22636.t1 AT1G58525 33.433 335 195 10 30 358 29 341 6.77e-45 157
MS.gene22636.t1 AT3G43570 32.628 331 181 9 30 358 29 319 6.96e-45 157
MS.gene22636.t1 AT1G75920 32.682 358 189 12 18 347 11 344 1.56e-44 157
MS.gene22636.t1 AT1G20135 31.940 335 193 11 17 341 15 324 2.93e-44 155
MS.gene22636.t1 AT4G16230 38.075 239 131 7 17 247 16 245 1.05e-43 152
MS.gene22636.t1 AT1G75910 32.827 329 189 12 30 347 27 334 1.05e-43 154
MS.gene22636.t1 AT2G19010 31.503 346 210 12 11 350 10 334 9.73e-43 152
MS.gene22636.t1 AT2G19010 31.503 346 210 12 11 350 40 364 1.60e-42 152
MS.gene22636.t1 AT1G53940 32.184 348 213 10 31 366 39 375 1.74e-42 152
MS.gene22636.t1 AT1G71691 29.758 289 190 5 82 366 3 282 1.93e-42 149
MS.gene22636.t1 AT1G75930 31.366 322 190 10 31 342 29 329 1.30e-41 149
MS.gene22636.t1 AT5G63170 32.012 328 194 11 19 339 16 321 2.36e-41 148
MS.gene22636.t1 AT1G75920 30.678 339 175 9 18 347 16 303 6.04e-40 144
MS.gene22636.t1 AT2G19050 31.054 351 205 13 26 366 26 349 1.37e-39 144
MS.gene22636.t1 AT1G54030 28.487 337 213 9 32 366 53 363 1.83e-38 142
MS.gene22636.t1 AT1G71691 33.704 270 164 7 29 294 53 311 1.58e-37 137
MS.gene22636.t1 AT1G75920 33.108 296 172 9 60 347 29 306 3.13e-37 137
MS.gene22636.t1 AT5G15720 31.104 299 178 9 83 366 48 333 6.82e-37 136
MS.gene22636.t1 AT1G73610 32.267 344 180 15 16 337 13 325 1.14e-36 136
MS.gene22636.t1 AT5G33370 34.454 238 144 5 31 263 30 260 2.07e-36 135
MS.gene22636.t1 AT2G04020 32.595 316 154 10 30 339 42 304 1.39e-34 130
MS.gene22636.t1 AT1G54020 26.954 371 240 9 1 364 1 347 2.77e-34 130
MS.gene22636.t1 AT5G15720 35.357 280 150 11 30 294 29 292 3.05e-34 129
MS.gene22636.t1 AT1G54000 27.557 352 221 9 24 364 27 355 1.53e-33 128
MS.gene22636.t1 AT1G54010 27.346 373 239 9 2 364 5 355 2.61e-33 127
MS.gene22636.t1 AT2G04020 38.049 205 114 4 30 232 42 235 7.07e-33 124
MS.gene22636.t1 AT3G43550 33.333 270 163 7 30 294 29 286 1.50e-31 120
MS.gene22636.t1 AT2G24560 32.258 279 168 10 30 298 33 300 9.54e-31 119
MS.gene22636.t1 AT2G19050 32.955 264 152 9 26 282 26 271 2.06e-30 117
MS.gene22636.t1 AT1G23500 27.966 354 210 11 15 353 19 342 1.29e-29 117
MS.gene22636.t1 AT3G27950 28.649 370 205 15 17 350 11 357 6.42e-29 115
MS.gene22636.t1 AT5G14450 28.249 354 201 13 30 350 40 373 7.72e-29 115
MS.gene22636.t1 AT1G54790 27.551 392 229 15 7 363 4 375 1.22e-28 115
MS.gene22636.t1 AT1G28610 30.829 386 211 18 4 357 3 364 3.31e-28 114
MS.gene22636.t1 AT1G56670 28.533 375 205 15 4 342 3 350 4.15e-28 113
MS.gene22636.t1 AT1G54030 28.788 264 162 7 32 293 53 292 6.93e-28 111
MS.gene22636.t1 AT2G27360 29.333 375 217 17 7 351 8 364 1.52e-27 112
MS.gene22636.t1 AT3G14210 27.666 347 213 12 31 364 36 357 3.26e-27 111
MS.gene22636.t1 AT3G14220 26.975 367 226 14 13 365 14 352 1.17e-26 109
MS.gene22636.t1 AT1G53940 31.985 272 168 9 31 296 39 299 3.07e-26 107
MS.gene22636.t1 AT3G48460 28.736 348 208 15 32 357 39 368 5.83e-26 107
MS.gene22636.t1 AT1G28660 29.551 379 221 15 7 357 8 368 6.58e-26 107
MS.gene22636.t1 AT1G67830 28.291 357 205 15 30 353 29 367 1.26e-25 106
MS.gene22636.t1 AT1G28660 28.760 379 225 15 7 357 8 369 1.46e-25 106
MS.gene22636.t1 AT1G28640 28.831 385 217 18 7 357 8 369 6.74e-25 104
MS.gene22636.t1 AT3G62280 28.409 352 213 13 25 359 30 359 7.79e-25 104
MS.gene22636.t1 AT1G28650 28.532 361 210 14 25 357 31 371 1.60e-24 103
MS.gene22636.t1 AT5G03610 28.882 322 194 16 32 341 44 342 3.20e-24 102
MS.gene22636.t1 AT1G28670 28.010 382 225 16 7 357 8 370 8.15e-24 101
MS.gene22636.t1 AT1G28580 27.049 366 226 15 12 351 17 367 9.15e-24 101
MS.gene22636.t1 AT2G31550 31.343 201 125 7 156 347 13 209 1.16e-23 97.8
MS.gene22636.t1 AT1G54020 25.882 255 172 5 114 364 20 261 3.61e-23 98.2
MS.gene22636.t1 AT1G54020 25.882 255 172 5 114 364 20 261 3.61e-23 98.2
MS.gene22636.t1 AT1G54020 25.882 255 172 5 114 364 20 261 3.61e-23 98.2
MS.gene22636.t1 AT1G28600 29.060 351 208 15 31 357 31 364 3.85e-23 99.8
MS.gene22636.t1 AT1G54790 26.415 371 210 15 30 363 30 374 1.63e-22 97.8
MS.gene22636.t1 AT1G28570 27.666 347 209 14 31 351 34 364 2.53e-22 97.4
MS.gene22636.t1 AT1G09390 27.381 336 205 12 26 342 32 347 4.63e-22 96.7
MS.gene22636.t1 AT1G28590 28.571 350 202 15 31 351 36 366 7.28e-22 96.3
MS.gene22636.t1 AT1G31550 27.895 380 227 18 1 351 4 365 7.98e-22 96.3
MS.gene22636.t1 AT4G16233 39.370 127 75 2 241 366 5 130 9.09e-22 90.5
MS.gene22636.t1 AT3G05180 25.691 362 221 12 30 360 35 379 3.24e-21 94.4
MS.gene22636.t1 AT4G01130 25.648 347 196 13 31 339 34 356 1.01e-20 92.8
MS.gene22636.t1 AT1G54020 26.341 205 146 3 164 364 9 212 1.15e-20 90.1
MS.gene22636.t1 AT5G03600 26.496 351 207 16 10 341 22 340 7.30e-20 90.1
MS.gene22636.t1 AT5G03600 26.506 332 199 15 23 341 6 305 8.75e-20 89.4
MS.gene22636.t1 AT1G56670 27.329 322 176 13 4 294 3 297 1.52e-19 88.2
MS.gene22636.t1 AT1G31550 27.083 384 222 19 1 351 4 362 3.85e-19 88.2
MS.gene22636.t1 AT3G14210 28.571 210 140 6 164 364 21 229 1.01e-18 85.5
MS.gene22636.t1 AT3G26430 24.352 386 235 15 1 350 1 365 1.58e-18 86.7
MS.gene22636.t1 AT1G54790 25.189 397 208 17 30 363 30 400 7.24e-18 84.7
MS.gene22636.t1 AT2G36325 27.463 335 188 17 28 341 44 344 1.54e-15 77.4
MS.gene22636.t1 AT4G16220 43.269 104 49 4 24 126 23 117 1.54e-14 73.2
MS.gene22636.t1 AT4G01130 24.719 267 152 10 111 339 15 270 3.97e-14 72.8
MS.gene22636.t1 AT1G28580 24.399 291 183 12 84 351 10 286 7.66e-13 68.9
MS.gene22636.t1 AT5G03590 32.911 158 88 7 25 182 29 168 1.32e-12 66.6

Find 63 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCCAGCTATTTATGTATT+TGG 0.105963 3.4:-49299681 MS.gene22636:CDS
TCCAATCACAACAGCAAATA+TGG 0.234293 3.4:+49298277 None:intergenic
ATATTTAATTGACAATAAAT+TGG 0.255835 3.4:+49297705 None:intergenic
ACTAGTTGTTCCATATTAAT+AGG 0.257116 3.4:+49296337 None:intergenic
ATACACATCTCCTATTAATA+TGG 0.267773 3.4:-49296347 MS.gene22636:CDS
TTGTTCTTGAGCCTGCTTAT+TGG 0.276527 3.4:+49297748 None:intergenic
TGTTCTTGAGCCTGCTTATT+GGG 0.281967 3.4:+49297749 None:intergenic
ATTGGAAGCAATGATATATT+TGG 0.284679 3.4:-49298260 MS.gene22636:CDS
TTGTCAATTAAATATAATAA+AGG 0.291828 3.4:-49297697 MS.gene22636:CDS
GGAGGTGCTGGAATATTTAA+TGG 0.318006 3.4:-49298871 MS.gene22636:CDS
GAAATTCCTTATCATAACTA+TGG 0.328037 3.4:+49299755 None:intergenic
AAGGCAATTATTCCTTACTA+TGG 0.329293 3.4:-49299606 MS.gene22636:CDS
CTCCCAGTTGGTTTCTTAGT+TGG 0.330907 3.4:+49299573 None:intergenic
CATGGTGTTAACTTTGCATC+TGG 0.361603 3.4:-49298892 MS.gene22636:CDS
TTTCCAACTAAGAAACCAAC+TGG 0.387725 3.4:-49299576 MS.gene22636:CDS
AATTCTGAATGATGTCTTGT+AGG 0.390013 3.4:+49297596 None:intergenic
TTTGTTGATAGACTTTATAA+TGG 0.392522 3.4:-49296379 MS.gene22636:CDS
TCCATATTTGCTGTTGTGAT+TGG 0.392832 3.4:-49298278 MS.gene22636:CDS
CTTGACTCTTTCTCTTGTAA+AGG 0.417918 3.4:-49299625 MS.gene22636:CDS
AACTTTGCATCTGGAGGTGC+TGG 0.420986 3.4:-49298883 MS.gene22636:CDS
GCAAGGAAATTTGAGATAGT+TGG 0.426946 3.4:-49297793 MS.gene22636:CDS
CTTATTGGGCAGCATCCAAT+TGG 0.428003 3.4:+49297763 None:intergenic
ATTCCTTCAACATGGATTGA+AGG 0.439089 3.4:+49297674 None:intergenic
AAAGATGCTTGTTGTGGACT+TGG 0.443661 3.4:-49296511 MS.gene22636:CDS
ATAGTTGGCGTTGGTCCAAT+TGG 0.456561 3.4:-49297778 MS.gene22636:CDS
ATTCAGAATTCAGTTTCTTA+CGG 0.457554 3.4:-49297583 MS.gene22636:intron
TTGGCACAAAGGCTTGAAAC+TGG 0.466144 3.4:+49296460 None:intergenic
GGAAAATCAATGCCATAGTA+AGG 0.468510 3.4:+49299594 None:intergenic
CAATTTCCATTCCTTCAACA+TGG 0.476866 3.4:+49297666 None:intergenic
ATATTTCCATAGTTATGATA+AGG 0.479736 3.4:-49299761 MS.gene22636:CDS
GAAAACTTGACACAACAAAC+AGG 0.486851 3.4:-49298332 MS.gene22636:CDS
TTCAATCCATGTTGAAGGAA+TGG 0.499636 3.4:-49297672 MS.gene22636:CDS
TCTCCAAATACATAAATAGC+TGG 0.502551 3.4:+49299678 None:intergenic
TTGGATGCTGCCCAATAAGC+AGG 0.504039 3.4:-49297759 MS.gene22636:CDS
GCTGCCTCAGTAGGATGGAC+TGG 0.508685 3.4:+49296412 None:intergenic
AGGCCTTCAATCCATGTTGA+AGG 0.510582 3.4:-49297677 MS.gene22636:CDS
TTAGATACTAAGGAGAGGTA+AGG 0.515848 3.4:+49298949 None:intergenic
AAACACCCCACAACAATATG+TGG 0.527276 3.4:-49298207 MS.gene22636:CDS
CCATTGCTAAACCTCCCAGT+TGG 0.530428 3.4:+49299561 None:intergenic
ATACGCATTGCTGCCTCAGT+AGG 0.537513 3.4:+49296403 None:intergenic
TGGAATCCACATATTGTTGT+GGG 0.537819 3.4:+49298201 None:intergenic
GGAGACTCACTTGTTGATGT+TGG 0.541601 3.4:-49299660 MS.gene22636:CDS
AATATCTTTGACAAAGCAAG+TGG 0.550682 3.4:-49298375 MS.gene22636:CDS
GATACTAAGGAGAGGTAAGG+TGG 0.558579 3.4:+49298952 None:intergenic
ATGGAATCCACATATTGTTG+TGG 0.565462 3.4:+49298200 None:intergenic
ATTCTGAATGATGTCTTGTA+GGG 0.572338 3.4:+49297597 None:intergenic
ACAACAATATGTGGATTCCA+TGG 0.579220 3.4:-49298198 MS.gene22636:CDS
GGAATGGAAATTGCAGAACA+AGG 0.588303 3.4:-49297656 MS.gene22636:CDS
GCATTGCTGCCTCAGTAGGA+TGG 0.589498 3.4:+49296407 None:intergenic
GGTGTTAACTTTGCATCTGG+AGG 0.589960 3.4:-49298889 MS.gene22636:CDS
GGTCTTGTCTATTGGCACAA+AGG 0.605361 3.4:+49296449 None:intergenic
GACTATATAACAATGGTGCA+AGG 0.608673 3.4:-49297810 MS.gene22636:CDS
ATTTGGTTACTATAACTCAA+AGG 0.608949 3.4:-49298243 MS.gene22636:CDS
AAATTTGAGATAGTTGGCGT+TGG 0.610055 3.4:-49297787 MS.gene22636:CDS
AAGAATGTATCATTCTTGCA+TGG 0.617881 3.4:-49298910 MS.gene22636:CDS
TGGCAGAGACTATATAACAA+TGG 0.619822 3.4:-49297817 MS.gene22636:intron
GGAGAGGTAAGGTGGTGACG+TGG 0.671631 3.4:+49298960 None:intergenic
CAACTAAGAAACCAACTGGG+AGG 0.671928 3.4:-49299572 MS.gene22636:CDS
TTCCAACTAAGAAACCAACT+GGG 0.678656 3.4:-49299575 MS.gene22636:CDS
CCAACTGGGAGGTTTAGCAA+TGG 0.692546 3.4:-49299561 MS.gene22636:CDS
GATGTGAAAGATGCTTGTTG+TGG 0.694359 3.4:-49296517 MS.gene22636:CDS
GGAATCCACATATTGTTGTG+GGG 0.712103 3.4:+49298202 None:intergenic
GGATCCAGTCCATCCTACTG+AGG 0.712223 3.4:-49296416 MS.gene22636:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATTGACAATAAAT+TGG + chr3.4:49298390-49298409 None:intergenic 10.0%
!! TTGTCAATTAAATATAATAA+AGG - chr3.4:49298395-49298414 MS.gene22636:intron 10.0%
!!! AATTATTTTATTTCTCTTTT+GGG - chr3.4:49299328-49299347 MS.gene22636:intron 10.0%
!!! ATAACATTTTTTAGTAAAAT+AGG - chr3.4:49297402-49297421 MS.gene22636:intron 10.0%
!! AATGTTAAATAAAATGACTA+AGG - chr3.4:49297611-49297630 MS.gene22636:CDS 15.0%
!! AGAAAAAATATTGTATCAAA+TGG - chr3.4:49298601-49298620 MS.gene22636:intron 15.0%
!! AGTAACTAAAAATAAAAATG+TGG + chr3.4:49298727-49298746 None:intergenic 15.0%
!! ATATGAAGTAAAATGTTTAT+TGG - chr3.4:49299465-49299484 MS.gene22636:intron 15.0%
!! TTACTTCATATATTCTTTAA+TGG + chr3.4:49299456-49299475 None:intergenic 15.0%
!!! CAATTATTTTATTTCTCTTT+TGG - chr3.4:49299327-49299346 MS.gene22636:intron 15.0%
!!! TATTTAACATTTGACTTTTT+TGG + chr3.4:49297602-49297621 None:intergenic 15.0%
!!! TGTAGGTTTTTTTTTTTTTA+GGG + chr3.4:49298995-49299014 None:intergenic 15.0%
!!! TTGTAGGTTTTTTTTTTTTT+AGG + chr3.4:49298996-49299015 None:intergenic 15.0%
!!! TTTTACTATGTTTTCATTTT+TGG + chr3.4:49297495-49297514 None:intergenic 15.0%
!!! TTTTCACAATATAGAATTAT+AGG + chr3.4:49297987-49298006 None:intergenic 15.0%
!!! TTTTCTTTTCATATTATAGT+TGG + chr3.4:49299259-49299278 None:intergenic 15.0%
!! AAAAAGATCATATGCATATT+AGG - chr3.4:49298003-49298022 MS.gene22636:intron 20.0%
!! AAAAGATCATATGCATATTA+GGG - chr3.4:49298004-49298023 MS.gene22636:intron 20.0%
!! ATATTTCCATAGTTATGATA+AGG - chr3.4:49296331-49296350 MS.gene22636:CDS 20.0%
!! ATTGATAAACTAACTAATAC+AGG + chr3.4:49299311-49299330 None:intergenic 20.0%
!! GATATATTATGTAACAATCT+TGG + chr3.4:49299099-49299118 None:intergenic 20.0%
!! GTAATTTCAAAAATGAGTAT+TGG - chr3.4:49298173-49298192 MS.gene22636:CDS 20.0%
!! TAATATAGATCTATCAGTAA+TGG + chr3.4:49298913-49298932 None:intergenic 20.0%
!! TTGATAAACTAACTAATACA+GGG + chr3.4:49299310-49299329 None:intergenic 20.0%
!!! AAGACAATAGCATTAAATTT+TGG + chr3.4:49296937-49296956 None:intergenic 20.0%
!!! AGTGTTTGTTTTAGTATTAT+TGG - chr3.4:49296616-49296635 MS.gene22636:intron 20.0%
!!! GAATTTGATTTTAGATACTA+AGG + chr3.4:49297156-49297175 None:intergenic 20.0%
!!! GCATATTGATTATTGATAAT+TGG - chr3.4:49296977-49296996 MS.gene22636:intron 20.0%
!!! TCAAAATAATAATTTTGGGT+TGG - chr3.4:49298243-49298262 MS.gene22636:CDS 20.0%
!!! TCTTTACATTTTGAGTTTTT+TGG + chr3.4:49297525-49297544 None:intergenic 20.0%
!!! TGATAATTGGTAATAGTAAT+AGG - chr3.4:49296990-49297009 MS.gene22636:intron 20.0%
!!! TTCTTCATTTTTATAAGCTT+AGG - chr3.4:49296369-49296388 MS.gene22636:CDS 20.0%
!!! TTTGTTGATAGACTTTATAA+TGG - chr3.4:49299713-49299732 MS.gene22636:CDS 20.0%
!!! TTTTAAGCTTTTGATTGATA+TGG + chr3.4:49299230-49299249 None:intergenic 20.0%
!!! TTTTGAAAAAAAATGGGATA+AGG + chr3.4:49298229-49298248 None:intergenic 20.0%
!!! TTTTGCATGCATTTTAATAT+TGG - chr3.4:49298042-49298061 MS.gene22636:intron 20.0%
! ACTAGTTGTTCCATATTAAT+AGG + chr3.4:49299758-49299777 None:intergenic 25.0%
! ACTATATTTCATTCCTTTCT+TGG + chr3.4:49297568-49297587 None:intergenic 25.0%
! ATACACATCTCCTATTAATA+TGG - chr3.4:49299745-49299764 MS.gene22636:CDS 25.0%
! ATATTAAAATGCATGCTCAA+TGG - chr3.4:49298135-49298154 MS.gene22636:intron 25.0%
! ATATTATGTAACAATCTTGG+AGG + chr3.4:49299096-49299115 None:intergenic 25.0%
! ATTCAGAATTCAGTTTCTTA+CGG - chr3.4:49298509-49298528 MS.gene22636:intron 25.0%
! ATTGCTTTACATATATCTCT+TGG - chr3.4:49298563-49298582 MS.gene22636:intron 25.0%
! ATTGGAAGCAATGATATATT+TGG - chr3.4:49297832-49297851 MS.gene22636:intron 25.0%
! ATTTGGTTACTATAACTCAA+AGG - chr3.4:49297849-49297868 MS.gene22636:intron 25.0%
! CAAACATGTAAATACAGAAT+TGG + chr3.4:49297296-49297315 None:intergenic 25.0%
! CTCACTAAAAATACAATTAC+AGG - chr3.4:49297921-49297940 MS.gene22636:intron 25.0%
! CTGTTCAAGCAAAATATAAT+GGG - chr3.4:49298748-49298767 MS.gene22636:intron 25.0%
! CTTTAAACCTAAATAAAGTC+GGG + chr3.4:49297647-49297666 None:intergenic 25.0%
! GAAATTCCTTATCATAACTA+TGG + chr3.4:49296340-49296359 None:intergenic 25.0%
! TATGTAAAGCAATGAGATAT+AGG + chr3.4:49298556-49298575 None:intergenic 25.0%
! TCTAATATGCACAAACAAAA+TGG - chr3.4:49296769-49296788 MS.gene22636:intron 25.0%
! TCTGTTCAAGCAAAATATAA+TGG - chr3.4:49298747-49298766 MS.gene22636:intron 25.0%
! TGTGTTTACCTATATAGTAT+AGG + chr3.4:49298075-49298094 None:intergenic 25.0%
! TGTTCAAGCAAAATATAATG+GGG - chr3.4:49298749-49298768 MS.gene22636:intron 25.0%
!! AGAACTACACTTACAATTTT+TGG + chr3.4:49297254-49297273 None:intergenic 25.0%
!! GCTTTAAACCTAAATAAAGT+CGG + chr3.4:49297648-49297667 None:intergenic 25.0%
!! TATATCTCTCATTTCCTTTT+TGG - chr3.4:49299418-49299437 MS.gene22636:intron 25.0%
!! TTACAAATTGAACTTTGAGA+AGG - chr3.4:49296741-49296760 MS.gene22636:intron 25.0%
!! TTTTCTCTTAAATACTGTCT+AGG - chr3.4:49298694-49298713 MS.gene22636:intron 25.0%
!!! AAAAATATGGTCTTGTCTAT+TGG + chr3.4:49299654-49299673 None:intergenic 25.0%
!!! ATAGACAAGACCATATTTTT+TGG - chr3.4:49299654-49299673 MS.gene22636:CDS 25.0%
!!! CATGCATTTTAATATTGGAT+CGG - chr3.4:49298047-49298066 MS.gene22636:intron 25.0%
!!! CATGCATTTTAATATTGGAT+CGG + chr3.4:49298066-49298047 None:intergenic 25.0%
!!! CTGTAATTGTATTTTTAGTG+AGG + chr3.4:49297923-49297942 None:intergenic 25.0%
!!! CTTTTTTCCATGTTAAATCA+TGG + chr3.4:49297354-49297373 None:intergenic 25.0%
!!! TAGACAAGACCATATTTTTT+GGG - chr3.4:49299655-49299674 MS.gene22636:CDS 25.0%
!!! TTGAGCATGCATTTTAATAT+TGG + chr3.4:49298135-49298154 None:intergenic 25.0%
!!! TTTTGATTGATATGGTTACT+AGG + chr3.4:49299222-49299241 None:intergenic 25.0%
AAAGCAAAAGAAGATTGCAA+AGG + chr3.4:49296694-49296713 None:intergenic 30.0%
AAGAATGTATCATTCTTGCA+TGG - chr3.4:49297182-49297201 MS.gene22636:intron 30.0%
AAGGCAATTATTCCTTACTA+TGG - chr3.4:49296486-49296505 MS.gene22636:CDS 30.0%
AATATCTTTGACAAAGCAAG+TGG - chr3.4:49297717-49297736 MS.gene22636:CDS 30.0%
AATTCTGAATGATGTCTTGT+AGG + chr3.4:49298499-49298518 None:intergenic 30.0%
ACTAGGAGTTGTAAGTTTAA+TGG + chr3.4:49299205-49299224 None:intergenic 30.0%
ACTCCAGCTATTTATGTATT+TGG - chr3.4:49296411-49296430 MS.gene22636:CDS 30.0%
ATCTATCAGTAATGGTTCAA+AGG + chr3.4:49298905-49298924 None:intergenic 30.0%
ATGTTTATTGGATTGTTGTG+AGG - chr3.4:49299477-49299496 MS.gene22636:intron 30.0%
ATTCTGAATGATGTCTTGTA+GGG + chr3.4:49298498-49298517 None:intergenic 30.0%
TATATAGTCTCTGCCAAAAA+AGG + chr3.4:49298271-49298290 None:intergenic 30.0%
TATATCTCTCATTTCCTTTC+AGG - chr3.4:49299545-49299564 MS.gene22636:CDS 30.0%
TCACATCTTTAAATCCTGAA+AGG + chr3.4:49299562-49299581 None:intergenic 30.0%
TCTCCAAATACATAAATAGC+TGG + chr3.4:49296417-49296436 None:intergenic 30.0%
TGGGCTAATATGTACTATAA+AGG - chr3.4:49296910-49296929 MS.gene22636:intron 30.0%
TGTAAATACAGAATTGGAGA+AGG + chr3.4:49297290-49297309 None:intergenic 30.0%
! ACTAGCTTATGCATCAAAAT+TGG - chr3.4:49296873-49296892 MS.gene22636:intron 30.0%
! CTAATTGTAGTCTTAGTTAG+AGG + chr3.4:49299121-49299140 None:intergenic 30.0%
! TGATTTTAGATACTAAGGAG+AGG + chr3.4:49297151-49297170 None:intergenic 30.0%
! TGTCATCAAAGAAGAGATTT+TGG - chr3.4:49299054-49299073 MS.gene22636:intron 30.0%
!! AAAAATGCTGCTGATTTGAT+TGG - chr3.4:49296555-49296574 MS.gene22636:intron 30.0%
!! AAAATTTGTTTGACTTGCCA+TGG - chr3.4:49297076-49297095 MS.gene22636:intron 30.0%
!! AAATGTTAGTGTAGCTTTGT+AGG + chr3.4:49299012-49299031 None:intergenic 30.0%
!! ATAGGAGATGTGTATTTTGA+AGG + chr3.4:49299740-49299759 None:intergenic 30.0%
AAAATGACTAAGGTTGCGTT+TGG - chr3.4:49297621-49297640 MS.gene22636:CDS 35.0%
AACATTACACAACCACATGT+TGG - chr3.4:49296667-49296686 MS.gene22636:intron 35.0%
AATTGGAAGACAAGAGGAAA+TGG - chr3.4:49296890-49296909 MS.gene22636:intron 35.0%
ACAACAATATGTGGATTCCA+TGG - chr3.4:49297894-49297913 MS.gene22636:intron 35.0%
ACAATTACAGGTAAACACAC+TGG - chr3.4:49297933-49297952 MS.gene22636:intron 35.0%
ATGGAATCCACATATTGTTG+TGG + chr3.4:49297895-49297914 None:intergenic 35.0%
ATTGATTGTCTCTGCAAGAA+AGG + chr3.4:49297700-49297719 None:intergenic 35.0%
ATTGGAAGACAAGAGGAAAT+GGG - chr3.4:49296891-49296910 MS.gene22636:intron 35.0%
CAATTTCCATTCCTTCAACA+TGG + chr3.4:49298429-49298448 None:intergenic 35.0%
CATCAAAATTGGAAGACAAG+AGG - chr3.4:49296884-49296903 MS.gene22636:intron 35.0%
CTTGACTCTTTCTCTTGTAA+AGG - chr3.4:49296467-49296486 MS.gene22636:CDS 35.0%
GAAAACTTGACACAACAAAC+AGG - chr3.4:49297760-49297779 MS.gene22636:CDS 35.0%
GACTATATAACAATGGTGCA+AGG - chr3.4:49298282-49298301 MS.gene22636:CDS 35.0%
GAGATTTATTGATCCGATGA+TGG - chr3.4:49296848-49296867 MS.gene22636:intron 35.0%
GATCGGTACCTATACTATAT+AGG - chr3.4:49298064-49298083 MS.gene22636:intron 35.0%
GGAAAATCAATGCCATAGTA+AGG + chr3.4:49296501-49296520 None:intergenic 35.0%
GGTCTGTTTAAACTCCAAAA+AGG + chr3.4:49299435-49299454 None:intergenic 35.0%
TCAACCTTATTGACCAAGAA+AGG - chr3.4:49297444-49297463 MS.gene22636:intron 35.0%
TCCAATCACAACAGCAAATA+TGG + chr3.4:49297818-49297837 None:intergenic 35.0%
TGGAATCCACATATTGTTGT+GGG + chr3.4:49297894-49297913 None:intergenic 35.0%
TGGCAGAGACTATATAACAA+TGG - chr3.4:49298275-49298294 MS.gene22636:CDS 35.0%
TTAGATACTAAGGAGAGGTA+AGG + chr3.4:49297146-49297165 None:intergenic 35.0%
TTCAATCCATGTTGAAGGAA+TGG - chr3.4:49298420-49298439 MS.gene22636:intron 35.0%
TTCCAACTAAGAAACCAACT+GGG - chr3.4:49296517-49296536 MS.gene22636:CDS 35.0%
TTGTGCACCATGATTTAACA+TGG - chr3.4:49297344-49297363 MS.gene22636:intron 35.0%
TTTCCAACTAAGAAACCAAC+TGG - chr3.4:49296516-49296535 MS.gene22636:CDS 35.0%
! AAATTTGAGATAGTTGGCGT+TGG - chr3.4:49298305-49298324 MS.gene22636:CDS 35.0%
! ATCATCTTCTGTGCTCTTTT+TGG - chr3.4:49298951-49298970 MS.gene22636:CDS 35.0%
! ATTCCTTCAACATGGATTGA+AGG + chr3.4:49298421-49298440 None:intergenic 35.0%
! CAGCAAATATGGATTTTGAG+AGG + chr3.4:49297807-49297826 None:intergenic 35.0%
! CATAAGCTAGTTTCCATCAT+CGG + chr3.4:49296864-49296883 None:intergenic 35.0%
! CTCTTCTTTGATGACATGTT+CGG + chr3.4:49299050-49299069 None:intergenic 35.0%
! GCAAGGAAATTTGAGATAGT+TGG - chr3.4:49298299-49298318 MS.gene22636:CDS 35.0%
! TATAATGGGGTCGTCTAATA+TGG - chr3.4:49298762-49298781 MS.gene22636:intron 35.0%
! TCTTCTTTGATGACATGTTC+GGG + chr3.4:49299049-49299068 None:intergenic 35.0%
! TGTCTTGTTGATGTTATGTC+AGG - chr3.4:49296951-49296970 MS.gene22636:intron 35.0%
!! GCTCTTTTTGGTGAAAAAAG+AGG - chr3.4:49298963-49298982 MS.gene22636:CDS 35.0%
!! TCCATATTTGCTGTTGTGAT+TGG - chr3.4:49297814-49297833 MS.gene22636:CDS 35.0%
!! TTGACTTGCCATGGTATATT+TGG - chr3.4:49297085-49297104 MS.gene22636:intron 35.0%
!!! AAGAGATTTTGGAGTTCTCT+AGG - chr3.4:49299065-49299084 MS.gene22636:intron 35.0%
!!! TATTTTTAGTGAGGAAGCCA+TGG + chr3.4:49297914-49297933 None:intergenic 35.0%
AAACACCCCACAACAATATG+TGG - chr3.4:49297885-49297904 MS.gene22636:intron 40.0%
AGCTGCAACCAAATATACCA+TGG + chr3.4:49297096-49297115 None:intergenic 40.0%
CTCTCCTTTCTTGGTCAATA+AGG + chr3.4:49297451-49297470 None:intergenic 40.0%
GGAATCCACATATTGTTGTG+GGG + chr3.4:49297893-49297912 None:intergenic 40.0%
GGAATGGAAATTGCAGAACA+AGG - chr3.4:49298436-49298455 MS.gene22636:intron 40.0%
GGACTGGATCCCAAAAAATA+TGG + chr3.4:49299667-49299686 None:intergenic 40.0%
TATCTCATGCTCTCCTTTCT+TGG + chr3.4:49297460-49297479 None:intergenic 40.0%
TGACTTTCGACATTTGTGCA+TGG + chr3.4:49296802-49296821 None:intergenic 40.0%
TGTTCTTGAGCCTGCTTATT+GGG + chr3.4:49298346-49298365 None:intergenic 40.0%
TTGGTTGCAGCTGAAAAAGT+AGG - chr3.4:49297104-49297123 MS.gene22636:intron 40.0%
TTGTTCTTGAGCCTGCTTAT+TGG + chr3.4:49298347-49298366 None:intergenic 40.0%
! CATGGTGTTAACTTTGCATC+TGG - chr3.4:49297200-49297219 MS.gene22636:intron 40.0%
! GATGTGAAAGATGCTTGTTG+TGG - chr3.4:49299575-49299594 MS.gene22636:CDS 40.0%
!! AAAGATGCTTGTTGTGGACT+TGG - chr3.4:49299581-49299600 MS.gene22636:CDS 40.0%
!! GAAAAGTGCTTGACCAAGAA+AGG - chr3.4:49297552-49297571 MS.gene22636:intron 40.0%
!! GGAGGTGCTGGAATATTTAA+TGG - chr3.4:49297221-49297240 MS.gene22636:intron 40.0%
!!! AGATTTTGGAGTTCTCTAGG+AGG - chr3.4:49299068-49299087 MS.gene22636:intron 40.0%
!!! TTTTGGGTTGGCACCTTTTT+TGG - chr3.4:49298255-49298274 MS.gene22636:CDS 40.0%
ACATGAAGGAGACATATGCG+TGG + chr3.4:49299153-49299172 None:intergenic 45.0%
AGGCCTTCAATCCATGTTGA+AGG - chr3.4:49298415-49298434 MS.gene22636:intron 45.0%
CAACTAAGAAACCAACTGGG+AGG - chr3.4:49296520-49296539 MS.gene22636:CDS 45.0%
CTAATATGGACCCGGTCTAA+AGG - chr3.4:49298776-49298795 MS.gene22636:intron 45.0%
CTTATTGGGCAGCATCCAAT+TGG + chr3.4:49298332-49298351 None:intergenic 45.0%
GATACTAAGGAGAGGTAAGG+TGG + chr3.4:49297143-49297162 None:intergenic 45.0%
GATTGCAAAGGACCAACATG+TGG + chr3.4:49296682-49296701 None:intergenic 45.0%
GGTGTTAACTTTGCATCTGG+AGG - chr3.4:49297203-49297222 MS.gene22636:intron 45.0%
GTTTCCTCCGGATCAATGTA+GGG - chr3.4:49299173-49299192 MS.gene22636:intron 45.0%
TCTCCTTCATGTGTTTCCTC+CGG - chr3.4:49299161-49299180 MS.gene22636:intron 45.0%
TGTTTCCTCCGGATCAATGT+AGG - chr3.4:49299172-49299191 MS.gene22636:intron 45.0%
TTGGCACAAAGGCTTGAAAC+TGG + chr3.4:49299635-49299654 None:intergenic 45.0%
TTTCCTCCGGATCAATGTAG+GGG - chr3.4:49299174-49299193 MS.gene22636:intron 45.0%
! CGTTTGGCCCGACTTTATTT+AGG - chr3.4:49297637-49297656 MS.gene22636:CDS 45.0%
! CTCCCAGTTGGTTTCTTAGT+TGG + chr3.4:49296522-49296541 None:intergenic 45.0%
! GGAGACTCACTTGTTGATGT+TGG - chr3.4:49296432-49296451 MS.gene22636:CDS 45.0%
! GGTCTTGTCTATTGGCACAA+AGG + chr3.4:49299646-49299665 None:intergenic 45.0%
!! ATAGTTGGCGTTGGTCCAAT+TGG - chr3.4:49298314-49298333 MS.gene22636:CDS 45.0%
!! AATATTTACTAAAATTAAAT+AGG + chr3.4:49298810-49298829 None:intergenic 5.0%
!! ATATTTACTAAAATTAAATA+GGG + chr3.4:49298809-49298828 None:intergenic 5.0%
!!! ATTATTATTTTGAAAAAAAA+TGG + chr3.4:49298236-49298255 None:intergenic 5.0%
!!! TTATTATTTTGAAAAAAAAT+GGG + chr3.4:49298235-49298254 None:intergenic 5.0%
!!! TTTTTCAAAATAATAATTTT+GGG - chr3.4:49298239-49298258 MS.gene22636:CDS 5.0%
!!! TTTTTTCAAAATAATAATTT+TGG - chr3.4:49298238-49298257 MS.gene22636:CDS 5.0%
AGGGAGATCCACCTTTAGAC+CGG + chr3.4:49298790-49298809 None:intergenic 50.0%
ATACGCATTGCTGCCTCAGT+AGG + chr3.4:49299692-49299711 None:intergenic 50.0%
ATATGGACCCGGTCTAAAGG+TGG - chr3.4:49298779-49298798 MS.gene22636:intron 50.0%
CCAACTGGGAGGTTTAGCAA+TGG - chr3.4:49296531-49296550 MS.gene22636:intron 50.0%
CCATTGCTAAACCTCCCAGT+TGG + chr3.4:49296534-49296553 None:intergenic 50.0%
GACACACCCCTACATTGATC+CGG + chr3.4:49299183-49299202 None:intergenic 50.0%
GATCCGGAGGAAACACATGA+AGG + chr3.4:49299167-49299186 None:intergenic 50.0%
TTGGATGCTGCCCAATAAGC+AGG - chr3.4:49298333-49298352 MS.gene22636:CDS 50.0%
! AACTTTGCATCTGGAGGTGC+TGG - chr3.4:49297209-49297228 MS.gene22636:intron 50.0%
ACACCCCTACATTGATCCGG+AGG + chr3.4:49299180-49299199 None:intergenic 55.0%
GCATTGCTGCCTCAGTAGGA+TGG + chr3.4:49299688-49299707 None:intergenic 55.0%
GGATCCAGTCCATCCTACTG+AGG - chr3.4:49299676-49299695 MS.gene22636:CDS 55.0%
GGGAGATCCACCTTTAGACC+GGG + chr3.4:49298789-49298808 None:intergenic 55.0%
GGGGTCGTCTAATATGGACC+CGG - chr3.4:49298768-49298787 MS.gene22636:intron 55.0%
GCTGCCTCAGTAGGATGGAC+TGG + chr3.4:49299683-49299702 None:intergenic 60.0%
! GGAGAGGTAAGGTGGTGACG+TGG + chr3.4:49297135-49297154 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 49296327 49299787 49296327 ID=MS.gene22636
chr3.4 mRNA 49296327 49299787 49296327 ID=MS.gene22636.t1;Parent=MS.gene22636
chr3.4 exon 49299538 49299787 49299538 ID=MS.gene22636.t1.exon1;Parent=MS.gene22636.t1
chr3.4 CDS 49299538 49299787 49299538 ID=cds.MS.gene22636.t1;Parent=MS.gene22636.t1
chr3.4 exon 49298855 49299000 49298855 ID=MS.gene22636.t1.exon2;Parent=MS.gene22636.t1
chr3.4 CDS 49298855 49299000 49298855 ID=cds.MS.gene22636.t1;Parent=MS.gene22636.t1
chr3.4 exon 49298172 49298405 49298172 ID=MS.gene22636.t1.exon3;Parent=MS.gene22636.t1
chr3.4 CDS 49298172 49298405 49298172 ID=cds.MS.gene22636.t1;Parent=MS.gene22636.t1
chr3.4 exon 49297584 49297833 49297584 ID=MS.gene22636.t1.exon4;Parent=MS.gene22636.t1
chr3.4 CDS 49297584 49297833 49297584 ID=cds.MS.gene22636.t1;Parent=MS.gene22636.t1
chr3.4 exon 49296327 49296547 49296327 ID=MS.gene22636.t1.exon5;Parent=MS.gene22636.t1
chr3.4 CDS 49296327 49296547 49296327 ID=cds.MS.gene22636.t1;Parent=MS.gene22636.t1
Gene Sequence

>MS.gene22636

ATGGATATTTCCATAGTTATGATAAGGAATTTCTTTCTATCTTTCTTCATTTTTATAAGCTTAGGATTCTTAGAAGCTCAAAAGACTCCAGCTATTTATGTATTTGGAGACTCACTTGTTGATGTTGGCAACAACAATCACTTGACTCTTTCTCTTGTAAAGGCAATTATTCCTTACTATGGCATTGATTTTCCAACTAAGAAACCAACTGGGAGGTTTAGCAATGGCAAAAATGCTGCTGATTTGATTGGTAAGTTATTCAAAGTTCACTCTCTTTGATTTTCAAACAAGTGTTTGTTTTAGTATTATTGGAAGATGACAAATTTACACTCTTTTTTTGAACATTACACAACCACATGTTGGTCCTTTGCAATCTTCTTTTGCTTTAATATTATTAGCTTCTTTGTTTGTCTATTACAAATTGAACTTTGAGAAGGTTTTGTCTAATATGCACAAACAAAATGGTCTTGCACCATGCACAAATGTCGAAAGTCACATCATATTTCATTTAATTTAATGATGAGATTTATTGATCCGATGATGGAAACTAGCTTATGCATCAAAATTGGAAGACAAGAGGAAATGGGCTAATATGTACTATAAAGGACCAAAATTTAATGCTATTGTCTTGTTGATGTTATGTCAGGCATGCATATTGATTATTGATAATTGGTAATAGTAATAGGCTTTGTGTAATATTGCATATGTTAAAGTAATAAAAGTAAGTTTTTCAACTGCAATAATCTTACAAAATTTGTTTGACTTGCCATGGTATATTTGGTTGCAGCTGAAAAAGTAGGTCTTGCCACGTCACCACCTTACCTCTCCTTAGTATCTAAAATCAAATTCAACAAGAAGAATGTATCATTCTTGCATGGTGTTAACTTTGCATCTGGAGGTGCTGGAATATTTAATGGCACAGATCCAAAAATTGTAAGTGTAGTTCTAATTCTTTCTTTTCCTTCTCCAATTCTGTATTTACATGTTTGTACAATAAATTTGTAGTCGAAAAATAAATTGTGCACCATGATTTAACATGGAAAAAAGTGATGATTTAGATTAATTGATAAATTTGATAACATTTTTTAGTAAAATAGGTCTAGATCTTAACTTATTCTCAACCTTATTGACCAAGAAAGGAGAGCATGAGATAAAATGAAAAATGCCAAAAATGAAAACATAGTAAAAGTAACAACCAAAAAACTCAAAATGTAAAGAAATGAAAGAAAAGTGCTTGACCAAGAAAGGAATGAAATATAGTAAAAGTATCAACCAAAAAAGTCAAATGTTAAATAAAATGACTAAGGTTGCGTTTGGCCCGACTTTATTTAGGTTTAAAGCTACTTTATTTTAGTAATGAAAGAATATTACCTTTCTTGCAGAGACAATCAATATCTTTGACAAAGCAAGTGGACTATTATTCACAAGTGCATGAAAACTTGACACAACAAACAGGAGCATCTACACTTCAGAAACACCTCTCAAAATCCATATTTGCTGTTGTGATTGGAAGCAATGATATATTTGGTTACTATAACTCAAAGGATCTTCAAAAGAAAAACACCCCACAACAATATGTGGATTCCATGGCTTCCTCACTAAAAATACAATTACAGGTAAACACACTGGTTTTTAAATTGTTATTAAGTTACTATTTCCTATAATTCTATATTGTGAAAAAGATCATATGCATATTAGGGTTAAAATTTATGTTATTTTGCATGCATTTTAATATTGGATCGGTACCTATACTATATAGGTAAACACATACAGTAATTTTATTCATGTAAAGTATACGTACCGATCCAATATTAAAATGCATGCTCAATGGTAAACACATGATCTAGTAATTTCAAAAATGAGTATTGGTTTCATTTTAATTTTATAAATAATAAGTTACCTTATCCCATTTTTTTTCAAAATAATAATTTTGGGTTGGCACCTTTTTTGGCAGAGACTATATAACAATGGTGCAAGGAAATTTGAGATAGTTGGCGTTGGTCCAATTGGATGCTGCCCAATAAGCAGGCTCAAGAACAAAACAGAATGTTTTTCACAAACCAATTTATTGTCAATTAAATATAATAAAGGCCTTCAATCCATGTTGAAGGAATGGAAATTGCAGAACAAGGACTTAATAAGTTACTCGTATTTTGATAGTTTTGCTGCCCTACAAGACATCATTCAGAATTCAGTTTCTTACGGTATGATTCATCATCACATAATCCTATATCTCATTGCTTTACATATATCTCTTGGAAGAAAATAAAAATGAGAAAAAATATTGTATCAAATGGAAAATTTATCTCTTTATCATCTACTGTTATTTGAAAATAAAATATTAAACTAATTATAAATAAATACATTTTTTCTCTTAAATACTGTCTAGGAGAGTATCCACATTTTTATTTTTAGTTACTTCTGTTCAAGCAAAATATAATGGGGTCGTCTAATATGGACCCGGTCTAAAGGTGGATCTCCCTATTTAATTTTAGTAAATATTACTAATTTTTTTGTTTTTTGCTTTATTAATATAAAATTCTTTTTTTATTTTTCTAAAAATGATAAAGATCAACCTTTGAACCATTACTGATAGATCTATATTAGACACGCTTAAATATAATATCATCTTCTGTGCTCTTTTTGGTGAAAAAAGAGGTCAAAGCCCTAAAAAAAAAAAAACCTACAAAGCTACACTAACATTTCTAAGCATACAAGTCCCGAACATGTCATCAAAGAAGAGATTTTGGAGTTCTCTAGGAGGAACCTCCAAGATTGTTACATAATATATCCTCTAACTAAGACTACAATTAGCTAGTTAATCCACGCATATGTCTCCTTCATGTGTTTCCTCCGGATCAATGTAGGGGTGTGTCCATTAAACTTACAACTCCTAGTAACCATATCAATCAAAAGCTTAAAATCATTTCCAACTATAATATGAAAAGAAAATAAAATTTTGTTCTCTAGTAATTTGCAACCCTGTATTAGTTAGTTTATCAATTATTTTATTTCTCTTTTGGGTAGAGTTTATCACTTATTTATTGTTTCTTGTCAAATAGAGCTTTTATTTTTCTTTCTATTAACTTTCTATATCTCTCATTTCCTTTTTGGAGTTTAAACAGACCATTAAAGAATATATGAAGTAAAATGTTTATTGGATTGTTGTGAGGAGAATGACATTTGTATGACTTTGATTTTTCTTTCTATTAACTTTCTATATCTCTCATTTCCTTTCAGGATTTAAAGATGTGAAAGATGCTTGTTGTGGACTTGGTGAGCTGAATGCTCAATTTTTTTGTACACCAGTTTCAAGCCTTTGTGCCAATAGACAAGACCATATTTTTTGGGATCCAGTCCATCCTACTGAGGCAGCAATGCGTATCTTTGTTGATAGACTTTATAATGGACCTTCAAAATACACATCTCCTATTAATATGGAACAACTAGTAGCTCTTTGA
Protein sequence

>MS.gene22636.t1

MDISIVMIRNFFLSFFIFISLGFLEAQKTPAIYVFGDSLVDVGNNNHLTLSLVKAIIPYYGIDFPTKKPTGRFSNGKNAADLIAEKVGLATSPPYLSLVSKIKFNKKNVSFLHGVNFASGGAGIFNGTDPKIRQSISLTKQVDYYSQVHENLTQQTGASTLQKHLSKSIFAVVIGSNDIFGYYNSKDLQKKNTPQQYVDSMASSLKIQLQRLYNNGARKFEIVGVGPIGCCPISRLKNKTECFSQTNLLSIKYNKGLQSMLKEWKLQNKDLISYSYFDSFAALQDIIQNSVSYGFKDVKDACCGLGELNAQFFCTPVSSLCANRQDHIFWDPVHPTEAAMRIFVDRLYNGPSKYTSPINMEQLVAL