Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22685.t1 | XP_003626362.1 | 91 | 156 | 3 | 1 | 1 | 156 | 1 | 145 | 2.70E-74 | 288.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22685.t1 | Q02610 | 85.3 | 156 | 12 | 1 | 1 | 156 | 1 | 145 | 6.3e-72 | 271.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22685.t1 | B7FGV9 | 91.0 | 156 | 3 | 1 | 1 | 156 | 1 | 145 | 1.9e-74 | 288.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22685 | MS.gene011492 | PPI |
| MS.gene22685 | MS.gene62862 | PPI |
| MS.gene22685 | MS.gene71901 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22685.t1 | MTR_7g114240 | 91.026 | 156 | 3 | 1 | 1 | 156 | 1 | 145 | 3.45e-97 | 278 |
| MS.gene22685.t1 | MTR_7g114240 | 86.842 | 114 | 4 | 1 | 1 | 114 | 1 | 103 | 2.90e-65 | 196 |
| MS.gene22685.t1 | MTR_6g029200 | 64.516 | 155 | 45 | 1 | 2 | 156 | 8 | 152 | 7.26e-65 | 196 |
| MS.gene22685.t1 | MTR_4g057240 | 64.189 | 148 | 41 | 2 | 9 | 156 | 63 | 198 | 2.40e-61 | 189 |
| MS.gene22685.t1 | MTR_6g029200 | 75.424 | 118 | 29 | 0 | 39 | 156 | 25 | 142 | 3.68e-60 | 184 |
| MS.gene22685.t1 | MTR_4g101820 | 38.298 | 94 | 50 | 2 | 41 | 134 | 182 | 267 | 2.07e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22685.t1 | AT1G08830 | 76.923 | 156 | 25 | 1 | 1 | 156 | 1 | 145 | 9.63e-81 | 236 |
| MS.gene22685.t1 | AT1G08830 | 76.923 | 156 | 25 | 1 | 1 | 156 | 1 | 145 | 9.63e-81 | 236 |
| MS.gene22685.t1 | AT2G28190 | 63.636 | 154 | 45 | 1 | 3 | 156 | 66 | 208 | 1.93e-64 | 197 |
| MS.gene22685.t1 | AT5G18100 | 58.710 | 155 | 53 | 1 | 2 | 156 | 8 | 151 | 1.69e-59 | 183 |
| MS.gene22685.t1 | AT5G18100 | 56.522 | 138 | 49 | 1 | 2 | 139 | 8 | 134 | 2.77e-49 | 156 |
Find 59 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCGACATGCTGGTGATTT+AGG | 0.204339 | 7.4:-3048254 | MS.gene22685:CDS |
| GGCTTCCATATCCATGCCTT+GGG | 0.292332 | 7.4:-3048634 | MS.gene22685:CDS |
| ACTGTGACCGGAAATCTTTC+TGG | 0.298064 | 7.4:-3048676 | MS.gene22685:CDS |
| GCCCTTCCTATGATTGAGTT+TGG | 0.330134 | 7.4:+3047727 | None:intergenic |
| CTTAAGACCAGAAAGATTTC+CGG | 0.340182 | 7.4:+3048669 | None:intergenic |
| GCACCGTGCTCCTTACCATT+AGG | 0.399615 | 7.4:+3048290 | None:intergenic |
| TGGTAAGTTTCAACAGCCTT+TGG | 0.402756 | 7.4:-3048786 | MS.gene22685:CDS |
| GTGAAGGCTGTGGCAGTTCT+TGG | 0.413587 | 7.4:-3048857 | MS.gene22685:CDS |
| GGTCTTAAGCCTGGCCTCCA+TGG | 0.414866 | 7.4:-3048655 | MS.gene22685:CDS |
| TGGCTTCCATATCCATGCCT+TGG | 0.423080 | 7.4:-3048635 | MS.gene22685:CDS |
| ACTGGACCAAACTCAATCAT+AGG | 0.429060 | 7.4:-3047733 | MS.gene22685:CDS |
| GCATGTCGAATCTCATCCTC+AGG | 0.433796 | 7.4:+3048266 | None:intergenic |
| CTTCACCATTACTGACAATC+AGG | 0.444656 | 7.4:-3048067 | MS.gene22685:intron |
| ACAAATGGTTGCATGTCAAC+TGG | 0.450246 | 7.4:-3048604 | MS.gene22685:intron |
| GGACCACATTTCAATCCTAA+TGG | 0.461674 | 7.4:-3048305 | MS.gene22685:CDS |
| GTACCTTTCCCAAGATCATC+AGG | 0.463574 | 7.4:+3047685 | None:intergenic |
| CATGCCGATCCTGATGATCT+TGG | 0.469419 | 7.4:-3047694 | MS.gene22685:CDS |
| AGCTTCTCTCAGGAGGGAAA+TGG | 0.473090 | 7.4:-3048806 | MS.gene22685:CDS |
| ATGCCGATCCTGATGATCTT+GGG | 0.478164 | 7.4:-3047693 | MS.gene22685:CDS |
| AATGTCACTGTCGGCGATGA+TGG | 0.482153 | 7.4:-3048230 | MS.gene22685:intron |
| TGGTACTATTAGCTTCTCTC+AGG | 0.486454 | 7.4:-3048816 | MS.gene22685:CDS |
| AGTTGACATGCAACCATTTG+TGG | 0.493212 | 7.4:+3048606 | None:intergenic |
| AATCTTTCTGGTCTTAAGCC+TGG | 0.494092 | 7.4:-3048664 | MS.gene22685:CDS |
| AGATTTCCGGTCACAGTGGT+TGG | 0.506019 | 7.4:+3048682 | None:intergenic |
| CATGAGCTTAGCAAGACTAC+TGG | 0.517405 | 7.4:-3047366 | MS.gene22685:CDS |
| ATATGGAAGCCATGGAGGCC+AGG | 0.527324 | 7.4:+3048646 | None:intergenic |
| AGGCATGGATATGGAAGCCA+TGG | 0.529289 | 7.4:+3048638 | None:intergenic |
| AGCAAGACTACTGGAAATGC+TGG | 0.533538 | 7.4:-3047357 | MS.gene22685:CDS |
| GCAGGTCCAACCACTGTGAC+CGG | 0.534164 | 7.4:-3048688 | MS.gene22685:intron |
| GTGAGAAGTTCTGACAATCA+TGG | 0.540997 | 7.4:-3047189 | MS.gene22685:CDS |
| TGTTCACAGATCCCTCTCAC+TGG | 0.549506 | 7.4:-3047751 | MS.gene22685:intron |
| GGTAACAGTAATGATGTCTC+TGG | 0.553348 | 7.4:-3048836 | MS.gene22685:CDS |
| ACATTTCAATCCTAATGGTA+AGG | 0.554760 | 7.4:-3048300 | MS.gene22685:CDS |
| TACTATTAGCTTCTCTCAGG+AGG | 0.557121 | 7.4:-3048813 | MS.gene22685:CDS |
| GACCAAACTCAATCATAGGA+AGG | 0.559020 | 7.4:-3047729 | MS.gene22685:CDS |
| GTCAGTAATGGTGAAGCTTG+CGG | 0.567650 | 7.4:+3048074 | None:intergenic |
| ATTGAGTTTGGTCCAGTGAG+AGG | 0.575707 | 7.4:+3047739 | None:intergenic |
| TTGAGTTTGGTCCAGTGAGA+GGG | 0.579337 | 7.4:+3047740 | None:intergenic |
| GATTTAGGAAATGTCACTGT+CGG | 0.580192 | 7.4:-3048239 | MS.gene22685:CDS |
| TTGAACAATGGTGAAGGCTG+TGG | 0.590785 | 7.4:-3048867 | None:intergenic |
| ACATACCTGATTGTCAGTAA+TGG | 0.594183 | 7.4:+3048062 | None:intergenic |
| GAGGATGAGATTCGACATGC+TGG | 0.598972 | 7.4:-3048263 | MS.gene22685:CDS |
| ATCACATTGAACAATGGTGA+AGG | 0.610273 | 7.4:-3048873 | None:intergenic |
| GATCCTGATGATCTTGGGAA+AGG | 0.612525 | 7.4:-3047688 | MS.gene22685:intron |
| GCTTCCATATCCATGCCTTG+GGG | 0.616548 | 7.4:-3048633 | MS.gene22685:CDS |
| TTACTCTTCGCGGAGACCAA+AGG | 0.617471 | 7.4:+3048770 | None:intergenic |
| AATCCTAATGGTAAGGAGCA+CGG | 0.625283 | 7.4:-3048293 | MS.gene22685:CDS |
| ACCAAACTCAATCATAGGAA+GGG | 0.632037 | 7.4:-3047728 | MS.gene22685:CDS |
| CATGGATATGGAAGCCATGG+AGG | 0.632624 | 7.4:+3048641 | None:intergenic |
| ACTATTAGCTTCTCTCAGGA+GGG | 0.637590 | 7.4:-3048812 | MS.gene22685:CDS |
| CATGTCGAATCTCATCCTCA+GGG | 0.638518 | 7.4:+3048267 | None:intergenic |
| TTTCCCAAGATCATCAGGAT+CGG | 0.641905 | 7.4:+3047690 | None:intergenic |
| TTACCATTAGGATTGAAATG+TGG | 0.656736 | 7.4:+3048302 | None:intergenic |
| CTTCCATATCCATGCCTTGG+GGG | 0.658207 | 7.4:-3048632 | MS.gene22685:CDS |
| TAAGGAGCACGGTGCCCCTG+AGG | 0.679963 | 7.4:-3048282 | MS.gene22685:CDS |
| AAGACTACTGGAAATGCTGG+TGG | 0.685336 | 7.4:-3047354 | MS.gene22685:CDS |
| AGAAAGATTTCCGGTCACAG+TGG | 0.704388 | 7.4:+3048678 | None:intergenic |
| ATGTCGAATCTCATCCTCAG+GGG | 0.738664 | 7.4:+3048268 | None:intergenic |
| GCTGGTGGCAGAGTAGCTTG+TGG | 0.784017 | 7.4:-3047339 | MS.gene22685:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAAAAATAAAATCAAG+TGG | + | chr7.4:3047871-3047890 | None:intergenic | 15.0% |
| !! | ATTTCTAATGAATTATTCTA+GGG | - | chr7.4:3048026-3048045 | MS.gene22685:intron | 15.0% |
| !! | TAACCTATAAAACATATAAA+AGG | + | chr7.4:3047593-3047612 | None:intergenic | 15.0% |
| !!! | GTTTGATTTTAACTTTAAAA+TGG | - | chr7.4:3047916-3047935 | MS.gene22685:intron | 15.0% |
| !!! | TATCCTTTTATATGTTTTAT+AGG | - | chr7.4:3047587-3047606 | MS.gene22685:intron | 15.0% |
| !! | ATTATTCTAAATTGACAACA+AGG | - | chr7.4:3048232-3048251 | MS.gene22685:CDS | 20.0% |
| !! | CATTTCTAATGAATTATTCT+AGG | - | chr7.4:3048025-3048044 | MS.gene22685:intron | 20.0% |
| !! | TTAAATAAATAATAGAAGCG+CGG | + | chr7.4:3047675-3047694 | None:intergenic | 20.0% |
| !!! | AAGAAAATGTTTCCATTTTT+GGG | + | chr7.4:3048090-3048109 | None:intergenic | 20.0% |
| !!! | GATTTTATTTTTTTTGTGAC+CGG | - | chr7.4:3047874-3047893 | MS.gene22685:intron | 20.0% |
| !!! | GTTTCATTTTTAATATCTTG+AGG | - | chr7.4:3047480-3047499 | MS.gene22685:intron | 20.0% |
| !!! | TAAGAAAATGTTTCCATTTT+TGG | + | chr7.4:3048091-3048110 | None:intergenic | 20.0% |
| !!! | TGTTGTCAATTTAGAATAAT+GGG | + | chr7.4:3048232-3048251 | None:intergenic | 20.0% |
| !!! | TTGTTGTCAATTTAGAATAA+TGG | + | chr7.4:3048233-3048252 | None:intergenic | 20.0% |
| ! | ATGAAACAAATTATTGTCCA+AGG | + | chr7.4:3047467-3047486 | None:intergenic | 25.0% |
| !! | CTTTTGAATCTGTTTAATAC+AGG | - | chr7.4:3047713-3047732 | MS.gene22685:CDS | 25.0% |
| !! | TTTTGCATAACATTTCATCT+CGG | - | chr7.4:3048632-3048651 | MS.gene22685:CDS | 25.0% |
| !!! | AACCTTAATTTTTTGCATCA+CGG | + | chr7.4:3048793-3048812 | None:intergenic | 25.0% |
| !!! | AAGCACATTTTAAAGATAAC+CGG | + | chr7.4:3047896-3047915 | None:intergenic | 25.0% |
| !!! | TTTTAGTTATCTTCTTTTCC+AGG | - | chr7.4:3047845-3047864 | MS.gene22685:intron | 25.0% |
| !!! | TTTTTTAAACATTGACTGTG+CGG | - | chr7.4:3048754-3048773 | MS.gene22685:intron | 25.0% |
| AAAAATAAAATCAAGTGGCC+TGG | + | chr7.4:3047866-3047885 | None:intergenic | 30.0% | |
| AAACAAAAACTTACTCTTCG+CGG | + | chr7.4:3047282-3047301 | None:intergenic | 30.0% | |
| AACTTCCCTCAACAATAAAT+GGG | + | chr7.4:3048413-3048432 | None:intergenic | 30.0% | |
| AAGGTTCAAATGATCTTTAG+AGG | - | chr7.4:3048807-3048826 | MS.gene22685:CDS | 30.0% | |
| AATTGTCCCATTTATTGTTG+AGG | - | chr7.4:3048404-3048423 | MS.gene22685:intron | 30.0% | |
| ACATTTCAATCCTAATGGTA+AGG | - | chr7.4:3047739-3047758 | MS.gene22685:CDS | 30.0% | |
| AGATTCATTCAAGCAAATTG+AGG | + | chr7.4:3047540-3047559 | None:intergenic | 30.0% | |
| ATTGTCCCATTTATTGTTGA+GGG | - | chr7.4:3048405-3048424 | MS.gene22685:intron | 30.0% | |
| ATTTGTGACGATCACTTTAT+AGG | + | chr7.4:3048498-3048517 | None:intergenic | 30.0% | |
| GATTAAAAGTTGAAACTCTC+AGG | + | chr7.4:3048258-3048277 | None:intergenic | 30.0% | |
| GATTCATTCAAGCAAATTGA+GGG | + | chr7.4:3047539-3047558 | None:intergenic | 30.0% | |
| GCAATACATGTTAATCGATT+TGG | + | chr7.4:3047324-3047343 | None:intergenic | 30.0% | |
| TAACTTCCCTCAACAATAAA+TGG | + | chr7.4:3048414-3048433 | None:intergenic | 30.0% | |
| TTACCATTAGGATTGAAATG+TGG | + | chr7.4:3047740-3047759 | None:intergenic | 30.0% | |
| TTGCTTGAATGAATCTAAAG+TGG | - | chr7.4:3047544-3047563 | MS.gene22685:intron | 30.0% | |
| !! | AACTTTAAAATGGTTTCCTC+TGG | - | chr7.4:3047926-3047945 | MS.gene22685:intron | 30.0% |
| !! | TTGGAAACACTTTTTGTGTT+TGG | - | chr7.4:3048444-3048463 | MS.gene22685:intron | 30.0% |
| AACACAATTCATTCTCGACT+TGG | + | chr7.4:3047630-3047649 | None:intergenic | 35.0% | |
| AAGTGATCGTCACAAATTCA+AGG | - | chr7.4:3048501-3048520 | MS.gene22685:intron | 35.0% | |
| ACATACCTGATTGTCAGTAA+TGG | + | chr7.4:3047980-3047999 | None:intergenic | 35.0% | |
| ACCAAACTCAATCATAGGAA+GGG | - | chr7.4:3048311-3048330 | MS.gene22685:intron | 35.0% | |
| AGTGATCGTCACAAATTCAA+GGG | - | chr7.4:3048502-3048521 | MS.gene22685:intron | 35.0% | |
| CATGTTAAGCAACCCAAAAA+TGG | - | chr7.4:3048075-3048094 | MS.gene22685:CDS | 35.0% | |
| CTTAAGACCAGAAAGATTTC+CGG | + | chr7.4:3047373-3047392 | None:intergenic | 35.0% | |
| GACTGTGCGGTATAAAAAAA+AGG | - | chr7.4:3048767-3048786 | MS.gene22685:intron | 35.0% | |
| GATTTAGGAAATGTCACTGT+CGG | - | chr7.4:3047800-3047819 | MS.gene22685:intron | 35.0% | |
| TGTCATATTATGCTAGAGCT+AGG | + | chr7.4:3048557-3048576 | None:intergenic | 35.0% | |
| ! | GGGAAGTTAACACAATCTTT+TGG | - | chr7.4:3048425-3048444 | MS.gene22685:intron | 35.0% |
| !! | AATCATTAACTTGTGCCTTG+AGG | - | chr7.4:3048190-3048209 | MS.gene22685:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | - | chr7.4:3048191-3048210 | MS.gene22685:intron | 35.0% |
| AATCCTAATGGTAAGGAGCA+CGG | - | chr7.4:3047746-3047765 | MS.gene22685:intron | 40.0% | |
| ACAAATGGTTGCATGTCAAC+TGG | - | chr7.4:3047435-3047454 | MS.gene22685:intron | 40.0% | |
| ACATGTATTGCGAATTGTGC+AGG | - | chr7.4:3047333-3047352 | MS.gene22685:intron | 40.0% | |
| ACTGGACCAAACTCAATCAT+AGG | - | chr7.4:3048306-3048325 | MS.gene22685:CDS | 40.0% | |
| AGGCACTATTGAGTATGAGT+CGG | - | chr7.4:3047500-3047519 | MS.gene22685:intron | 40.0% | |
| AGTTGACATGCAACCATTTG+TGG | + | chr7.4:3047436-3047455 | None:intergenic | 40.0% | |
| ATGTCAACTGGTAAAGTCCT+TGG | - | chr7.4:3047447-3047466 | MS.gene22685:intron | 40.0% | |
| ATTCGACATGCTGGTGATTT+AGG | - | chr7.4:3047785-3047804 | MS.gene22685:intron | 40.0% | |
| CTTCACCATTACTGACAATC+AGG | - | chr7.4:3047972-3047991 | MS.gene22685:intron | 40.0% | |
| GACCAAACTCAATCATAGGA+AGG | - | chr7.4:3048310-3048329 | MS.gene22685:intron | 40.0% | |
| GGACCACATTTCAATCCTAA+TGG | - | chr7.4:3047734-3047753 | MS.gene22685:CDS | 40.0% | |
| GGCCGTGATGCAAAAAATTA+AGG | - | chr7.4:3048788-3048807 | MS.gene22685:CDS | 40.0% | |
| GGTAACAGTAATGATGTCTC+TGG | - | chr7.4:3047203-3047222 | MS.gene22685:CDS | 40.0% | |
| TGGTAAGTTTCAACAGCCTT+TGG | - | chr7.4:3047253-3047272 | MS.gene22685:intron | 40.0% | |
| TTGCTTAACATGTGCCCTAA+GGG | + | chr7.4:3048067-3048086 | None:intergenic | 40.0% | |
| TTTCCCAAGATCATCAGGAT+CGG | + | chr7.4:3048352-3048371 | None:intergenic | 40.0% | |
| ! | ACTATTAGCTTCTCTCAGGA+GGG | - | chr7.4:3047227-3047246 | MS.gene22685:intron | 40.0% |
| ! | GTGAGAAGTTCTGACAATCA+TGG | - | chr7.4:3048850-3048869 | MS.gene22685:CDS | 40.0% |
| ! | TACTATTAGCTTCTCTCAGG+AGG | - | chr7.4:3047226-3047245 | MS.gene22685:intron | 40.0% |
| ! | TGGTACTATTAGCTTCTCTC+AGG | - | chr7.4:3047223-3047242 | MS.gene22685:intron | 40.0% |
| !! | AATCTTTCTGGTCTTAAGCC+TGG | - | chr7.4:3047375-3047394 | MS.gene22685:intron | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | + | chr7.4:3048208-3048227 | None:intergenic | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | - | chr7.4:3048050-3048069 | MS.gene22685:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | - | chr7.4:3048049-3048068 | MS.gene22685:intron | 40.0% |
| AAGACTACTGGAAATGCTGG+TGG | - | chr7.4:3048685-3048704 | MS.gene22685:CDS | 45.0% | |
| ACTGTGACCGGAAATCTTTC+TGG | - | chr7.4:3047363-3047382 | MS.gene22685:CDS | 45.0% | |
| AGAAAGATTTCCGGTCACAG+TGG | + | chr7.4:3047364-3047383 | None:intergenic | 45.0% | |
| AGCAAGACTACTGGAAATGC+TGG | - | chr7.4:3048682-3048701 | MS.gene22685:CDS | 45.0% | |
| ATGCCGATCCTGATGATCTT+GGG | - | chr7.4:3048346-3048365 | MS.gene22685:intron | 45.0% | |
| ATGTCGAATCTCATCCTCAG+GGG | + | chr7.4:3047774-3047793 | None:intergenic | 45.0% | |
| ATTGAGTTTGGTCCAGTGAG+AGG | + | chr7.4:3048303-3048322 | None:intergenic | 45.0% | |
| CATGAGCTTAGCAAGACTAC+TGG | - | chr7.4:3048673-3048692 | MS.gene22685:CDS | 45.0% | |
| CATGTCGAATCTCATCCTCA+GGG | + | chr7.4:3047775-3047794 | None:intergenic | 45.0% | |
| GATCCTGATGATCTTGGGAA+AGG | - | chr7.4:3048351-3048370 | MS.gene22685:intron | 45.0% | |
| GCCCTTCCTATGATTGAGTT+TGG | + | chr7.4:3048315-3048334 | None:intergenic | 45.0% | |
| GGCACTATTGAGTATGAGTC+GGG | - | chr7.4:3047501-3047520 | MS.gene22685:intron | 45.0% | |
| GTACCTTTCCCAAGATCATC+AGG | + | chr7.4:3048357-3048376 | None:intergenic | 45.0% | |
| GTCAGTAATGGTGAAGCTTG+CGG | + | chr7.4:3047968-3047987 | None:intergenic | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | + | chr7.4:3048068-3048087 | None:intergenic | 45.0% | |
| TCATCTCGGTACTGCTGTAT+AGG | - | chr7.4:3048646-3048665 | MS.gene22685:CDS | 45.0% | |
| TTCCTCTGGTTGTGTAACTC+AGG | - | chr7.4:3047940-3047959 | MS.gene22685:intron | 45.0% | |
| TTCCTGAGTTACACAACCAG+AGG | + | chr7.4:3047945-3047964 | None:intergenic | 45.0% | |
| TTGAGTTTGGTCCAGTGAGA+GGG | + | chr7.4:3048302-3048321 | None:intergenic | 45.0% | |
| AATGTCACTGTCGGCGATGA+TGG | - | chr7.4:3047809-3047828 | MS.gene22685:intron | 50.0% | |
| AGATTTCCGGTCACAGTGGT+TGG | + | chr7.4:3047360-3047379 | None:intergenic | 50.0% | |
| AGCTTCTCTCAGGAGGGAAA+TGG | - | chr7.4:3047233-3047252 | MS.gene22685:intron | 50.0% | |
| AGGCATGGATATGGAAGCCA+TGG | + | chr7.4:3047404-3047423 | None:intergenic | 50.0% | |
| CATGCCGATCCTGATGATCT+TGG | - | chr7.4:3048345-3048364 | MS.gene22685:intron | 50.0% | |
| CATGGATATGGAAGCCATGG+AGG | + | chr7.4:3047401-3047420 | None:intergenic | 50.0% | |
| CTTCCATATCCATGCCTTGG+GGG | - | chr7.4:3047407-3047426 | MS.gene22685:intron | 50.0% | |
| GAGGATGAGATTCGACATGC+TGG | - | chr7.4:3047776-3047795 | MS.gene22685:intron | 50.0% | |
| GCATGTCGAATCTCATCCTC+AGG | + | chr7.4:3047776-3047795 | None:intergenic | 50.0% | |
| GCTTCCATATCCATGCCTTG+GGG | - | chr7.4:3047406-3047425 | MS.gene22685:intron | 50.0% | |
| GGCTTCCATATCCATGCCTT+GGG | - | chr7.4:3047405-3047424 | MS.gene22685:intron | 50.0% | |
| TCTCGGTACTGCTGTATAGG+TGG | - | chr7.4:3048649-3048668 | MS.gene22685:CDS | 50.0% | |
| TGGCTTCCATATCCATGCCT+TGG | - | chr7.4:3047404-3047423 | MS.gene22685:intron | 50.0% | |
| TGTTCACAGATCCCTCTCAC+TGG | - | chr7.4:3048288-3048307 | MS.gene22685:CDS | 50.0% | |
| TTACTCTTCGCGGAGACCAA+AGG | + | chr7.4:3047272-3047291 | None:intergenic | 50.0% | |
| ACCATTTGTGGTGTCCCCCA+AGG | + | chr7.4:3047424-3047443 | None:intergenic | 55.0% | |
| ATATGGAAGCCATGGAGGCC+AGG | + | chr7.4:3047396-3047415 | None:intergenic | 55.0% | |
| GCACCGTGCTCCTTACCATT+AGG | + | chr7.4:3047752-3047771 | None:intergenic | 55.0% | |
| GTGAAGGCTGTGGCAGTTCT+TGG | - | chr7.4:3047182-3047201 | MS.gene22685:CDS | 55.0% | |
| TGTCCCCCAAGGCATGGATA+TGG | + | chr7.4:3047413-3047432 | None:intergenic | 55.0% | |
| ! | CACTGTCGGCGATGATGGTA+TGG | - | chr7.4:3047814-3047833 | MS.gene22685:intron | 55.0% |
| GCAGGTCCAACCACTGTGAC+CGG | - | chr7.4:3047351-3047370 | MS.gene22685:CDS | 60.0% | |
| GCCTTGGGGGACACCACAAA+TGG | - | chr7.4:3047420-3047439 | MS.gene22685:intron | 60.0% | |
| GCTGGTGGCAGAGTAGCTTG+TGG | - | chr7.4:3048700-3048719 | MS.gene22685:intron | 60.0% | |
| GGTCTTAAGCCTGGCCTCCA+TGG | - | chr7.4:3047384-3047403 | MS.gene22685:intron | 60.0% | |
| TTGTGGTGTCCCCCAAGGCA+TGG | + | chr7.4:3047419-3047438 | None:intergenic | 60.0% | |
| ! | TAAGGAGCACGGTGCCCCTG+AGG | - | chr7.4:3047757-3047776 | MS.gene22685:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3047179 | 3048882 | 3047179 | ID=MS.gene22685 |
| chr7.4 | mRNA | 3047179 | 3048882 | 3047179 | ID=MS.gene22685.t1;Parent=MS.gene22685 |
| chr7.4 | exon | 3048774 | 3048882 | 3048774 | ID=MS.gene22685.t1.exon1;Parent=MS.gene22685.t1 |
| chr7.4 | CDS | 3048774 | 3048882 | 3048774 | ID=cds.MS.gene22685.t1;Parent=MS.gene22685.t1 |
| chr7.4 | exon | 3048605 | 3048706 | 3048605 | ID=MS.gene22685.t1.exon2;Parent=MS.gene22685.t1 |
| chr7.4 | CDS | 3048605 | 3048706 | 3048605 | ID=cds.MS.gene22685.t1;Parent=MS.gene22685.t1 |
| chr7.4 | exon | 3048231 | 3048326 | 3048231 | ID=MS.gene22685.t1.exon3;Parent=MS.gene22685.t1 |
| chr7.4 | CDS | 3048231 | 3048326 | 3048231 | ID=cds.MS.gene22685.t1;Parent=MS.gene22685.t1 |
| chr7.4 | exon | 3048068 | 3048099 | 3048068 | ID=MS.gene22685.t1.exon4;Parent=MS.gene22685.t1 |
| chr7.4 | CDS | 3048068 | 3048099 | 3048068 | ID=cds.MS.gene22685.t1;Parent=MS.gene22685.t1 |
| chr7.4 | exon | 3047689 | 3047764 | 3047689 | ID=MS.gene22685.t1.exon5;Parent=MS.gene22685.t1 |
| chr7.4 | CDS | 3047689 | 3047764 | 3047689 | ID=cds.MS.gene22685.t1;Parent=MS.gene22685.t1 |
| chr7.4 | exon | 3047340 | 3047393 | 3047340 | ID=MS.gene22685.t1.exon6;Parent=MS.gene22685.t1 |
| chr7.4 | CDS | 3047340 | 3047393 | 3047340 | ID=cds.MS.gene22685.t1;Parent=MS.gene22685.t1 |
| chr7.4 | exon | 3047179 | 3047234 | 3047179 | ID=MS.gene22685.t1.exon7;Parent=MS.gene22685.t1 |
| chr7.4 | CDS | 3047179 | 3047234 | 3047179 | ID=cds.MS.gene22685.t1;Parent=MS.gene22685.t1 |
| Gene Sequence |
| Protein sequence |
