AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene22941


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22941.t1 MTR_1g085090 80.055 366 59 2 1 352 1 366 0.0 577
MS.gene22941.t1 MTR_1g085090 60.965 228 7 3 282 431 383 606 9.98e-76 248
MS.gene22941.t1 MTR_7g111260 66.393 366 109 3 1 352 1 366 5.37e-166 479
MS.gene22941.t1 MTR_7g111260 46.875 192 23 3 283 396 384 574 1.89e-37 144
MS.gene22941.t1 MTR_3g100980 38.965 367 200 4 11 355 10 374 7.26e-85 270
MS.gene22941.t1 MTR_4g123537 41.261 349 189 2 17 349 39 387 1.59e-81 263
MS.gene22941.t1 MTR_4g123537 36.628 172 31 3 283 376 408 579 1.32e-16 82.4
MS.gene22941.t1 MTR_3g100980 36.203 395 200 5 11 355 10 402 9.94e-79 255
MS.gene22941.t1 MTR_2g017750 37.294 303 167 6 3 283 8 309 3.93e-59 203
MS.gene22941.t1 MTR_8g087810 37.410 278 163 4 17 283 19 296 5.16e-59 202
MS.gene22941.t1 MTR_8g087780 36.585 287 165 5 14 283 10 296 4.14e-55 192
MS.gene22941.t1 MTR_3g112460 30.919 359 226 7 17 353 21 379 2.09e-53 187
MS.gene22941.t1 MTR_3g112470 31.198 359 225 7 17 353 21 379 4.70e-52 184
MS.gene22941.t1 MTR_3g112450 35.870 276 168 5 17 283 21 296 1.34e-51 182
MS.gene22941.t1 MTR_5g038380 40.167 239 140 2 17 252 26 264 1.63e-48 174
MS.gene22941.t1 MTR_5g055000 37.050 278 160 7 17 283 16 289 5.96e-48 173
MS.gene22941.t1 MTR_4g107670 36.145 249 147 4 11 253 18 260 1.52e-47 172
MS.gene22941.t1 MTR_4g015080 34.432 273 171 4 17 283 32 302 3.30e-46 168
MS.gene22941.t1 MTR_8g469310 38.912 239 143 1 17 252 24 262 2.67e-45 166
MS.gene22941.t1 MTR_7g067010 31.734 271 181 1 17 283 22 292 5.44e-44 162
MS.gene22941.t1 MTR_7g065080 32.601 273 175 3 17 283 29 298 5.96e-44 162
MS.gene22941.t1 MTR_7g051880 29.973 367 243 6 17 380 23 378 1.18e-43 160
MS.gene22941.t1 MTR_2g005130 33.704 270 167 4 18 283 39 300 2.45e-43 160
MS.gene22941.t1 MTR_3g462710 31.985 272 180 2 17 283 22 293 1.01e-42 158
MS.gene22941.t1 MTR_4g019580 34.191 272 172 4 17 283 34 303 1.77e-42 158
MS.gene22941.t1 MTR_5g012270 31.317 281 174 6 17 283 27 302 1.19e-41 155
MS.gene22941.t1 MTR_3g072300 31.724 290 184 5 3 283 10 294 1.58e-41 155
MS.gene22941.t1 MTR_7g052600 30.655 336 222 5 17 349 23 350 2.32e-41 154
MS.gene22941.t1 MTR_1g042310 29.630 270 183 3 3 267 12 279 3.44e-41 154
MS.gene22941.t1 MTR_7g051830 29.086 361 245 5 17 374 23 375 1.37e-40 152
MS.gene22941.t1 MTR_5g012290 32.270 282 171 6 17 283 25 301 2.65e-40 152
MS.gene22941.t1 MTR_3g069500 28.371 356 224 7 17 347 33 382 4.87e-40 151
MS.gene22941.t1 MTR_1g041815 29.720 286 190 4 3 283 13 292 4.90e-40 151
MS.gene22941.t1 MTR_4g101380 32.374 278 177 4 17 283 25 302 6.09e-40 151
MS.gene22941.t1 MTR_7g098040 29.562 274 179 3 3 267 20 288 6.48e-40 151
MS.gene22941.t1 MTR_1g041835 29.720 286 190 4 3 283 13 292 1.14e-39 150
MS.gene22941.t1 MTR_7g006540 32.616 279 174 4 19 283 63 341 4.10e-39 149
MS.gene22941.t1 MTR_7g098180 28.082 292 191 4 3 280 17 303 1.44e-38 147
MS.gene22941.t1 MTR_1g116930 31.387 274 180 4 17 283 21 293 1.49e-38 147
MS.gene22941.t1 MTR_7g098200 28.990 307 198 5 3 300 15 310 1.67e-38 147
MS.gene22941.t1 MTR_7g098090 27.931 290 191 4 3 283 19 299 2.86e-38 146
MS.gene22941.t1 MTR_7g098220 28.912 294 191 4 3 283 16 304 3.46e-38 146
MS.gene22941.t1 MTR_7g098150 27.241 290 193 4 3 283 19 299 3.52e-38 144
MS.gene22941.t1 MTR_7g098200 29.927 274 178 3 3 267 15 283 1.19e-37 144
MS.gene22941.t1 MTR_1g075440 27.368 285 200 3 3 282 14 296 1.74e-37 144
MS.gene22941.t1 MTR_3g069440 28.696 345 223 6 17 340 31 373 5.64e-37 142
MS.gene22941.t1 MTR_7g098160 27.372 274 185 3 3 267 19 287 6.40e-37 142
MS.gene22941.t1 MTR_7g088820 32.226 301 179 9 1 283 3 296 8.05e-37 142
MS.gene22941.t1 MTR_1g042310 30.837 227 152 2 46 267 9 235 1.99e-36 140
MS.gene22941.t1 MTR_1g042310 29.958 237 161 2 36 267 6 242 1.99e-36 140
MS.gene22941.t1 MTR_7g088825 32.374 278 173 8 17 283 20 293 2.48e-36 140
MS.gene22941.t1 MTR_7g010820 29.861 288 192 4 3 283 12 296 4.57e-36 140
MS.gene22941.t1 MTR_1g041875 27.941 272 187 3 17 283 27 294 6.42e-36 139
MS.gene22941.t1 MTR_5g014150 30.464 302 198 4 3 300 30 323 8.11e-36 139
MS.gene22941.t1 MTR_4g098800 31.507 292 183 4 3 287 22 303 9.26e-36 139
MS.gene22941.t1 MTR_3g069420 29.927 274 179 3 17 287 32 295 9.50e-36 139
MS.gene22941.t1 MTR_4g098800 31.507 292 183 4 3 287 87 368 1.71e-35 139
MS.gene22941.t1 MTR_7g098230 28.467 274 179 4 23 283 31 300 2.35e-35 138
MS.gene22941.t1 MTR_7g098220 29.502 261 168 3 36 283 3 260 7.28e-35 136
MS.gene22941.t1 MTR_1g041885 29.956 227 154 2 46 267 9 235 3.37e-34 134
MS.gene22941.t1 MTR_7g005930 30.909 275 179 5 18 283 34 306 5.43e-34 134
MS.gene22941.t1 MTR_7g088790 32.082 293 184 7 1 283 13 300 5.63e-34 134
MS.gene22941.t1 MTR_7g065080 33.178 214 134 3 76 283 1 211 4.64e-33 130
MS.gene22941.t1 MTR_2g101590 31.522 276 178 6 15 283 22 293 6.40e-33 131
MS.gene22941.t1 MTR_4g107510 31.227 269 178 4 22 283 39 307 3.76e-32 129
MS.gene22941.t1 MTR_4g114340 33.333 270 175 3 17 283 22 289 4.05e-32 128
MS.gene22941.t1 MTR_2g101610 31.597 288 186 6 3 283 11 294 4.52e-32 129
MS.gene22941.t1 MTR_1g026740 29.747 316 206 8 3 307 2 312 9.48e-32 127
MS.gene22941.t1 MTR_7g088820 32.759 232 149 4 59 283 3 234 5.00e-31 125
MS.gene22941.t1 MTR_4g107610 32.812 256 161 6 18 266 30 281 9.22e-31 125
MS.gene22941.t1 MTR_7g013270 29.603 277 182 6 18 283 89 363 1.48e-30 124
MS.gene22941.t1 MTR_4g107580 29.151 271 182 5 22 283 27 296 7.14e-30 122
MS.gene22941.t1 MTR_2g101640 30.072 276 184 5 15 283 19 292 8.29e-30 122
MS.gene22941.t1 MTR_4g011280 28.938 273 183 6 19 281 32 303 9.48e-30 122
MS.gene22941.t1 MTR_1g026750 31.228 285 183 7 6 283 5 283 1.76e-29 120
MS.gene22941.t1 MTR_5g085850 30.072 276 182 4 17 285 28 299 6.93e-29 119
MS.gene22941.t1 MTR_4g033395 30.709 254 165 4 3 254 18 262 1.27e-28 117
MS.gene22941.t1 MTR_4g107530 30.000 270 180 5 22 283 36 304 7.89e-28 116
MS.gene22941.t1 MTR_5g038060 28.826 281 184 5 17 283 29 307 7.44e-27 113
MS.gene22941.t1 MTR_4g033325 30.159 252 165 3 3 252 17 259 8.97e-27 113
MS.gene22941.t1 MTR_4g033315 25.770 357 236 4 17 357 29 372 1.27e-26 112
MS.gene22941.t1 MTR_4g033310 25.770 357 236 4 17 357 29 372 1.27e-26 112
MS.gene22941.t1 MTR_1g009200 29.348 276 181 6 17 283 25 295 2.95e-26 111
MS.gene22941.t1 MTR_3g462710 33.152 184 118 2 105 283 1 184 4.08e-26 110
MS.gene22941.t1 MTR_0294s0020 27.599 279 186 4 17 291 29 295 6.49e-26 110
MS.gene22941.t1 MTR_4g033375 28.740 254 170 3 3 254 18 262 2.18e-25 108
MS.gene22941.t1 MTR_4g033330 29.134 254 169 3 3 254 17 261 5.58e-25 107
MS.gene22941.t1 MTR_8g103233 28.854 253 176 3 17 265 15 267 7.08e-25 107
MS.gene22941.t1 MTR_7g064780 25.540 278 195 6 17 283 24 300 2.45e-24 105
MS.gene22941.t1 MTR_8g469480 27.437 277 187 4 22 285 41 316 5.21e-24 105
MS.gene22941.t1 MTR_7g098200 29.268 205 127 4 105 300 1 196 9.49e-24 103
MS.gene22941.t1 MTR_2g101650 26.545 275 190 6 17 283 22 292 1.37e-23 103
MS.gene22941.t1 MTR_7g064800 25.357 280 195 6 17 283 24 302 3.13e-23 102
MS.gene22941.t1 MTR_2g101560 29.617 287 193 6 3 283 11 294 4.31e-23 102
MS.gene22941.t1 MTR_1g057460 27.675 271 186 6 15 283 40 302 4.69e-23 102
MS.gene22941.t1 MTR_7g088820 32.258 186 119 4 105 283 1 186 5.47e-23 101
MS.gene22941.t1 MTR_3g005010 27.451 255 169 4 3 254 16 257 1.49e-22 100
MS.gene22941.t1 MTR_1g026770 26.523 279 194 5 11 283 7 280 6.15e-22 98.6
MS.gene22941.t1 MTR_3g065350 57.778 90 4 1 282 337 66 155 2.12e-21 90.9
MS.gene22941.t1 MTR_4g024930 37.500 176 102 4 11 181 30 202 2.33e-21 97.1
MS.gene22941.t1 MTR_8g038880 23.342 377 242 8 1 346 1 361 3.56e-21 96.3
MS.gene22941.t1 MTR_3g014790 25.311 241 165 1 15 255 13 238 1.31e-20 94.7
MS.gene22941.t1 MTR_1g057460 27.615 239 163 6 47 283 1 231 1.77e-19 90.9
MS.gene22941.t1 MTR_0236s0050 27.197 239 164 6 47 283 1 231 7.07e-19 89.0
MS.gene22941.t1 MTR_4g033310 30.675 163 106 1 17 179 29 184 1.23e-18 88.2
MS.gene22941.t1 MTR_4g033325 35.099 151 89 2 104 252 18 161 3.59e-18 86.7
MS.gene22941.t1 MTR_4g033325 36.923 130 80 1 125 252 6 135 5.95e-18 85.9
MS.gene22941.t1 MTR_2g093640 26.766 269 179 6 4 265 10 267 3.30e-17 84.3
MS.gene22941.t1 MTR_4g033385 36.923 130 80 1 127 254 32 161 4.26e-17 83.6
MS.gene22941.t1 MTR_4g124330 36.975 119 54 2 122 240 9 106 3.57e-16 75.1
MS.gene22941.t1 MTR_2g093160 25.940 266 182 4 18 276 21 278 4.08e-16 80.9
MS.gene22941.t1 MTR_8g469470 22.348 264 185 4 18 266 31 289 6.95e-16 80.1
MS.gene22941.t1 MTR_5g038190 24.739 287 194 7 3 276 10 287 9.27e-16 79.7
MS.gene22941.t1 MTR_2g093180 24.444 225 160 3 46 265 48 267 1.51e-14 75.9
MS.gene22941.t1 MTR_1g009170 31.034 145 95 2 142 283 9 151 2.42e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene22941.t1 AT3G54140 33.088 272 177 2 17 283 22 293 5.16e-49 176
MS.gene22941.t1 AT3G54140 33.088 272 177 2 17 283 22 293 5.16e-49 176
MS.gene22941.t1 AT1G69850 39.574 235 140 1 17 249 23 257 8.75e-48 172
MS.gene22941.t1 AT3G25280 34.615 260 162 4 19 276 21 274 4.47e-47 169
MS.gene22941.t1 AT2G02020 26.179 424 220 6 17 347 40 463 7.29e-47 169
MS.gene22941.t1 AT1G59740 32.113 355 214 6 18 346 40 393 1.21e-46 169
MS.gene22941.t1 AT1G62200 33.808 281 171 3 17 285 50 327 1.22e-46 170
MS.gene22941.t1 AT1G62200 33.808 281 171 3 17 285 64 341 1.29e-46 170
MS.gene22941.t1 AT1G62200 34.409 279 167 3 17 287 50 320 5.24e-46 167
MS.gene22941.t1 AT5G01180 30.996 271 182 2 17 287 23 288 6.03e-44 162
MS.gene22941.t1 AT5G01180 30.996 271 182 2 17 287 23 288 6.03e-44 162
MS.gene22941.t1 AT5G01180 30.996 271 182 2 17 287 23 288 6.03e-44 162
MS.gene22941.t1 AT2G02020 28.286 350 212 6 17 346 40 370 2.32e-43 160
MS.gene22941.t1 AT2G37900 32.841 271 176 3 17 283 36 304 4.16e-43 159
MS.gene22941.t1 AT2G02040 31.868 273 179 2 17 287 39 306 5.47e-43 159
MS.gene22941.t1 AT1G33440 37.132 272 161 4 19 283 38 306 1.35e-42 158
MS.gene22941.t1 AT1G12110 33.333 294 179 5 17 293 25 318 3.10e-42 157
MS.gene22941.t1 AT3G25260 33.475 236 151 2 19 254 21 250 3.13e-42 156
MS.gene22941.t1 AT2G40460 31.379 290 185 5 3 283 10 294 3.13e-41 154
MS.gene22941.t1 AT3G53960 32.031 256 170 2 14 267 32 285 9.01e-41 153
MS.gene22941.t1 AT1G27040 34.874 238 150 1 17 249 21 258 1.32e-40 152
MS.gene22941.t1 AT1G27040 34.874 238 150 1 17 249 25 262 1.48e-40 152
MS.gene22941.t1 AT5G13400 35.374 294 175 7 2 281 48 340 2.63e-40 152
MS.gene22941.t1 AT2G26690 30.769 390 237 6 17 375 22 409 3.70e-40 151
MS.gene22941.t1 AT5G62730 33.209 268 154 2 17 284 54 296 6.63e-40 150
MS.gene22941.t1 AT2G26690 31.746 378 222 7 29 375 4 376 2.15e-39 149
MS.gene22941.t1 AT2G26690 32.044 362 213 6 45 375 5 364 2.77e-38 145
MS.gene22941.t1 AT4G21680 33.217 286 184 4 3 283 14 297 3.24e-38 146
MS.gene22941.t1 AT5G62730 33.462 260 148 2 25 284 3 237 3.94e-38 145
MS.gene22941.t1 AT1G68570 36.364 275 162 6 18 282 22 293 7.43e-38 145
MS.gene22941.t1 AT1G69870 32.852 277 175 3 17 283 49 324 1.27e-37 145
MS.gene22941.t1 AT1G27040 35.909 220 136 1 35 249 11 230 2.29e-37 143
MS.gene22941.t1 AT1G32450 30.909 275 184 2 17 287 35 307 5.58e-37 143
MS.gene22941.t1 AT2G37900 36.406 217 132 3 71 283 11 225 1.36e-36 140
MS.gene22941.t1 AT1G68570 36.293 259 155 5 31 282 8 263 7.67e-36 139
MS.gene22941.t1 AT5G46040 25.781 256 185 2 17 267 25 280 1.16e-33 133
MS.gene22941.t1 AT5G46050 26.087 253 182 2 20 267 28 280 5.41e-32 128
MS.gene22941.t1 AT5G28470 34.252 254 160 4 17 265 15 266 5.78e-32 128
MS.gene22941.t1 AT5G28470 34.252 254 160 4 17 265 15 266 6.45e-32 128
MS.gene22941.t1 AT1G52190 28.832 274 188 3 17 283 19 292 1.91e-30 124
MS.gene22941.t1 AT3G16180 27.431 288 197 5 5 283 9 293 1.24e-28 119
MS.gene22941.t1 AT1G22570 29.478 268 180 3 17 275 28 295 1.63e-28 118
MS.gene22941.t1 AT1G18880 29.167 288 191 8 3 283 7 288 1.77e-28 118
MS.gene22941.t1 AT1G72140 28.862 246 167 1 17 254 32 277 2.28e-28 117
MS.gene22941.t1 AT3G21670 28.125 352 210 8 38 353 51 395 2.77e-28 117
MS.gene22941.t1 AT3G54450 26.062 353 217 7 17 340 10 347 4.13e-28 117
MS.gene22941.t1 AT1G22540 31.967 244 162 2 11 252 24 265 9.51e-28 115
MS.gene22941.t1 AT5G62680 29.927 274 175 8 22 283 46 314 4.28e-27 114
MS.gene22941.t1 AT1G72125 32.645 242 150 5 21 255 31 266 3.95e-26 111
MS.gene22941.t1 AT5G19640 28.854 253 170 5 20 267 60 307 4.79e-26 111
MS.gene22941.t1 AT3G47960 29.091 275 174 8 22 283 64 330 1.07e-25 110
MS.gene22941.t1 AT1G27080 30.466 279 178 5 17 283 12 286 1.59e-25 109
MS.gene22941.t1 AT1G22570 30.544 239 157 3 46 275 20 258 4.14e-25 108
MS.gene22941.t1 AT1G72120 29.630 243 164 2 17 255 27 266 1.34e-24 106
MS.gene22941.t1 AT3G45660 28.033 239 153 6 35 266 40 266 5.72e-24 104
MS.gene22941.t1 AT3G45660 28.033 239 153 6 35 266 40 266 5.72e-24 104
MS.gene22941.t1 AT3G45660 28.033 239 153 6 35 266 61 287 6.08e-24 104
MS.gene22941.t1 AT3G45680 27.698 278 173 10 2 268 7 267 1.39e-23 103
MS.gene22941.t1 AT3G45690 26.538 260 166 8 19 266 18 264 2.97e-23 102
MS.gene22941.t1 AT1G22550 28.244 262 179 2 17 269 28 289 5.47e-23 102
MS.gene22941.t1 AT1G69860 25.271 277 194 6 17 283 16 289 3.99e-22 99.4
MS.gene22941.t1 AT1G72130 25.926 243 171 2 17 256 23 259 8.03e-22 98.2
MS.gene22941.t1 AT1G27080 30.645 248 156 5 48 283 1 244 3.29e-21 96.3
MS.gene22941.t1 AT3G45720 24.370 357 230 12 39 366 42 387 2.86e-20 93.6
MS.gene22941.t1 AT5G46050 27.381 168 117 2 105 267 1 168 4.75e-20 92.4
MS.gene22941.t1 AT3G45650 26.316 228 156 4 44 266 47 267 1.06e-19 92.0
MS.gene22941.t1 AT3G45650 26.316 228 156 4 44 266 47 267 1.13e-19 92.0
MS.gene22941.t1 AT3G45710 27.106 273 179 8 2 266 7 267 1.87e-19 91.3
MS.gene22941.t1 AT3G45700 26.923 286 172 11 2 275 7 267 2.20e-18 87.8
MS.gene22941.t1 AT5G14940 28.571 245 152 5 17 246 5 241 2.19e-17 84.7
MS.gene22941.t1 AT3G01350 28.139 231 145 4 17 235 5 226 7.72e-16 80.1
MS.gene22941.t1 AT5G11570 26.126 222 153 5 20 234 14 231 3.78e-14 74.7
MS.gene22941.t1 AT1G72130 32.000 125 82 1 135 256 17 141 1.17e-12 69.7
MS.gene22941.t1 AT1G72130 32.000 125 82 1 135 256 17 141 1.17e-12 69.7

Find 76 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTCTTCCATTGAATTA+TGG 0.165374 1.2:-58625302 None:intergenic
TGTTTCTTCCATTGAATTAT+GGG 0.210792 1.2:-58625301 None:intergenic
GGATCAGTTATTGGTGTTAC+TGG 0.239958 1.2:+58626196 MS.gene22941:CDS
ATTTCTTTAACTTCCTCTAT+TGG 0.242727 1.2:+58628064 MS.gene22941:CDS
AGGTGAAACACCTCTCTTAA+TGG 0.269533 1.2:+58628152 MS.gene22941:CDS
TCAACTTTGGGATCAGTTAT+TGG 0.272879 1.2:+58626187 MS.gene22941:CDS
CAACACTTTGACAAATTTCA+TGG 0.272897 1.2:+58625555 MS.gene22941:CDS
CAGTATTGGCTTCACTAGTT+TGG 0.275066 1.2:-58628221 None:intergenic
AGCTTAGTACTATACTTTAT+TGG 0.282321 1.2:+58625502 MS.gene22941:CDS
ATCATTGTGTTTGTATGCTT+TGG 0.282815 1.2:+58626051 MS.gene22941:CDS
ACTTTCTTGCTCTCCCTTGT+TGG 0.290210 1.2:+58625583 MS.gene22941:CDS
TTTCTTTAACTTCCTCTATT+GGG 0.299260 1.2:+58628065 MS.gene22941:CDS
CTTGATTTACCACATGCTTT+AGG 0.299383 1.2:-58625992 None:intergenic
AGAGCTTCCATGTTCATCTT+TGG 0.307984 1.2:+58625337 MS.gene22941:CDS
ATGGAGAATACAAAGGAATT+AGG 0.323607 1.2:+58628132 MS.gene22941:CDS
TTGGTGTTACTGGTATTGTT+TGG 0.332141 1.2:+58626206 MS.gene22941:CDS
TCATTGTGTTTGTATGCTTT+GGG 0.336923 1.2:+58626052 MS.gene22941:CDS
GCAGACATGTTCACTCTTGT+TGG 0.342817 1.2:+58627808 MS.gene22941:intron
TAAAGTTGTTCATTAGATTC+TGG 0.349322 1.2:-58626492 None:intergenic
AGAGGTTCATTAACAGCATT+TGG 0.351216 1.2:+58626088 MS.gene22941:CDS
TGGTGTTACTGGTATTGTTT+GGG 0.373138 1.2:+58626207 MS.gene22941:CDS
ACCTGAATAATCCTCAAAAT+AGG 0.374787 1.2:-58626349 None:intergenic
AGAAGAAGAATAACCTCATT+TGG 0.377972 1.2:-58626560 None:intergenic
TGCTAACCAATTTGATGAAA+AGG 0.379188 1.2:+58626111 MS.gene22941:CDS
ATAACAGTAGCTTCTTCAAT+TGG 0.385104 1.2:+58626268 MS.gene22941:CDS
AAAATCACTCACCACCCTTC+AGG 0.386975 1.2:+58627622 MS.gene22941:CDS
TGAAGTAGAAAGTGATTTCA+TGG 0.400504 1.2:-58627866 None:intergenic
TGTTTGTATGCTTTGGGAAT+GGG 0.403406 1.2:+58626058 MS.gene22941:CDS
GCCATTTCAATGACAATAGC+TGG 0.413834 1.2:+58627688 MS.gene22941:CDS
ACCAGCTATTGTCATTGAAA+TGG 0.417173 1.2:-58627689 None:intergenic
ACTTCCTCTATTGGGCCTCT+TGG 0.427686 1.2:+58628073 MS.gene22941:CDS
GTGTTTGTATGCTTTGGGAA+TGG 0.428271 1.2:+58626057 MS.gene22941:CDS
CAACAGATTCACCACATGTC+TGG 0.446255 1.2:+58625630 MS.gene22941:CDS
TTGGGAATGGGTGGAGTAAG+AGG 0.455587 1.2:+58626070 MS.gene22941:CDS
GAAAGTGATTTCATGGTTGA+AGG 0.467352 1.2:-58627859 None:intergenic
AATTCAATGGAAGAAACAAA+AGG 0.488343 1.2:+58625306 MS.gene22941:CDS
GATCACAGTTCAAGCTGCAT+TGG 0.495046 1.2:+58625958 MS.gene22941:CDS
AACACTTTGACAAATTTCAT+GGG 0.510777 1.2:+58625556 MS.gene22941:CDS
AACTCAAACCCATAATTCAA+TGG 0.515700 1.2:+58625293 MS.gene22941:CDS
TTGTATGCTTTGGGAATGGG+TGG 0.519214 1.2:+58626061 MS.gene22941:CDS
TTTGTCAGCATTGGATAACA+TGG 0.520721 1.2:+58625459 MS.gene22941:CDS
GAGGTAAGTATCTGAGATGA+AGG 0.523013 1.2:-58625608 None:intergenic
AGAAGAGGGTCCCTCAGTAT+TGG 0.526736 1.2:-58628235 None:intergenic
TCTTCTGATGAAACAGATGA+TGG 0.532640 1.2:+58628255 MS.gene22941:CDS
TGTTCATTAGATTCTGGCAG+TGG 0.534338 1.2:-58626486 None:intergenic
ATTCAATGGAAGAAACAAAA+GGG 0.537445 1.2:+58625307 MS.gene22941:CDS
ACACCTCTCTTAATGGTTGG+TGG 0.538286 1.2:+58628159 MS.gene22941:CDS
AGATAGTAACAATTCAATGA+TGG 0.541244 1.2:+58628113 MS.gene22941:CDS
ATCTGTTTCATCAGAAGAAG+AGG 0.542967 1.2:-58628250 None:intergenic
CATGAAATTTGTCAAAGTGT+TGG 0.551927 1.2:-58625554 None:intergenic
GTTACACAGCTTCAAAGAGT+TGG 0.552152 1.2:+58627646 MS.gene22941:CDS
TGTACCAAGAGGCCCAATAG+AGG 0.556413 1.2:-58628077 None:intergenic
TGAAGCTGTGTAACACCTGA+AGG 0.572853 1.2:-58627637 None:intergenic
AAAACATGATGATAAAGCTA+AGG 0.573309 1.2:+58628185 MS.gene22941:CDS
TGAGATGAAGGCACCAACAA+GGG 0.577394 1.2:-58625596 None:intergenic
CAGCTTCAAAGAGTTGGTGT+TGG 0.586012 1.2:+58627652 MS.gene22941:CDS
TTGCACACACTAACCAAATG+AGG 0.588659 1.2:+58626547 MS.gene22941:CDS
CTGAGATGAAGGCACCAACA+AGG 0.591772 1.2:-58625597 None:intergenic
CTTCCACCAACCATTAAGAG+AGG 0.596589 1.2:-58628162 None:intergenic
AAATCAAGTTGTGTGGAAGG+AGG 0.597719 1.2:+58626007 MS.gene22941:CDS
TTGTCAGCATTGGATAACAT+GGG 0.598817 1.2:+58625460 MS.gene22941:CDS
CAAGAAGTAACCAAGTGACA+TGG 0.600735 1.2:-58627902 None:intergenic
CTCAAAATAGGACTTTCACC+AGG 0.610110 1.2:-58626337 None:intergenic
GAAACACCTCTCTTAATGGT+TGG 0.612482 1.2:+58628156 MS.gene22941:CDS
TTCAATGATGGAGAATACAA+AGG 0.626874 1.2:+58628125 MS.gene22941:CDS
TCTGTTTCATCAGAAGAAGA+GGG 0.647970 1.2:-58628249 None:intergenic
AATTTACATCCTAAAGCATG+TGG 0.649108 1.2:+58625983 MS.gene22941:CDS
GGTAAATCAAGTTGTGTGGA+AGG 0.653776 1.2:+58626004 MS.gene22941:CDS
CAATGGAAGAAACAAAAGGG+TGG 0.662396 1.2:+58625310 MS.gene22941:CDS
ACTAGTGAAGCCAATACTGA+GGG 0.666695 1.2:+58628225 MS.gene22941:CDS
AACTAGTGAAGCCAATACTG+AGG 0.674814 1.2:+58628224 MS.gene22941:CDS
GAAGCTGTGTAACACCTGAA+GGG 0.679710 1.2:-58627636 None:intergenic
GTACTTACCAAAGATGAACA+TGG 0.689840 1.2:-58625344 None:intergenic
ATGTGGTAAATCAAGTTGTG+TGG 0.691318 1.2:+58626000 MS.gene22941:CDS
GACATGTGGTGAATCTGTTG+AGG 0.692585 1.2:-58625627 None:intergenic
GCTGTGTAACACCTGAAGGG+TGG 0.734299 1.2:-58627633 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAGAAAAAAAAACATT+TGG + chr1.2:58625760-58625779 MS.gene22941:intron 15.0%
!! TTATCACAAAATGTTAATTA+AGG - chr1.2:58626600-58626619 None:intergenic 15.0%
!! TTATTAATACTGTTACTAAA+AGG + chr1.2:58627944-58627963 MS.gene22941:intron 15.0%
!!! CTTTCTTTATTTTATGTAAT+TGG - chr1.2:58625747-58625766 None:intergenic 15.0%
!!! GTTATTTATTTATTTTGAGA+GGG + chr1.2:58627115-58627134 MS.gene22941:intron 15.0%
!! ACAAAGAAAAGTTCATAAAT+TGG - chr1.2:58627589-58627608 None:intergenic 20.0%
!! ATGGTTCCAAAATAAATAAT+TGG - chr1.2:58626991-58627010 None:intergenic 20.0%
!!! AAAAACAAAGAGTGTTAATT+TGG - chr1.2:58625380-58625399 None:intergenic 20.0%
!!! ACAATTTGAACTTGTTTTAT+TGG + chr1.2:58628016-58628035 MS.gene22941:intron 20.0%
!!! AGTTTGAAATATGTTACTAT+AGG + chr1.2:58625249-58625268 MS.gene22941:intron 20.0%
!!! CAAGTACCAATTATTTATTT+TGG + chr1.2:58626982-58627001 MS.gene22941:intron 20.0%
!!! GGTTATTTATTTATTTTGAG+AGG + chr1.2:58627114-58627133 MS.gene22941:intron 20.0%
!!! GTTTGAAATATGTTACTATA+GGG + chr1.2:58625250-58625269 MS.gene22941:intron 20.0%
!!! TATCACTTTTTCTTATGTTT+TGG - chr1.2:58626843-58626862 None:intergenic 20.0%
!!! TATTTTATGTAATTGGAACA+TGG - chr1.2:58625740-58625759 None:intergenic 20.0%
!!! TCTTTTCAATATGCTATATT+TGG + chr1.2:58627781-58627800 MS.gene22941:intron 20.0%
!!! TGAGTGATTTTTCTAATAAA+TGG - chr1.2:58627613-58627632 None:intergenic 20.0%
!!! TGTAACAAAACATATTGATT+TGG + chr1.2:58625409-58625428 MS.gene22941:intron 20.0%
! AAAACATGATGATAAAGCTA+AGG + chr1.2:58628185-58628204 MS.gene22941:CDS 25.0%
! AAATACCACAAAGAAAAAGA+GGG - chr1.2:58626917-58626936 None:intergenic 25.0%
! AACAAGAATGTTACCTATAT+TGG + chr1.2:58627414-58627433 MS.gene22941:intron 25.0%
! AACACTTTGACAAATTTCAT+GGG + chr1.2:58625556-58625575 MS.gene22941:CDS 25.0%
! AATACTTGTATGTATTGTGT+AGG + chr1.2:58625925-58625944 MS.gene22941:intron 25.0%
! AATGTGCATAAGAAAATTAG+TGG - chr1.2:58627562-58627581 None:intergenic 25.0%
! AATTCAATGGAAGAAACAAA+AGG + chr1.2:58625306-58625325 MS.gene22941:CDS 25.0%
! AGATAGTAACAATTCAATGA+TGG + chr1.2:58628113-58628132 MS.gene22941:CDS 25.0%
! AGCTTAGTACTATACTTTAT+TGG + chr1.2:58625502-58625521 MS.gene22941:CDS 25.0%
! ATATAGGTAACATTCTTGTT+AGG - chr1.2:58627414-58627433 None:intergenic 25.0%
! ATGTGCATAAGAAAATTAGT+GGG - chr1.2:58627561-58627580 None:intergenic 25.0%
! ATTAAGTAATGCCAAGAATT+TGG + chr1.2:58626725-58626744 MS.gene22941:intron 25.0%
! ATTCAATGGAAGAAACAAAA+GGG + chr1.2:58625307-58625326 MS.gene22941:CDS 25.0%
! CATGCATTTATTTGTGTAAA+GGG - chr1.2:58627258-58627277 None:intergenic 25.0%
! CTATGTTATCTACAAAGTAA+AGG - chr1.2:58626951-58626970 None:intergenic 25.0%
! GATAACCAAAATAAGCTTAT+TGG - chr1.2:58627763-58627782 None:intergenic 25.0%
! GCATTTATACTCAAATGTTA+TGG + chr1.2:58627277-58627296 MS.gene22941:intron 25.0%
! TAAAGTTGTTCATTAGATTC+TGG - chr1.2:58626495-58626514 None:intergenic 25.0%
! TAACCTGCATAAAACAATAA+TGG - chr1.2:58626437-58626456 None:intergenic 25.0%
! TGTTTCTTCCATTGAATTAT+GGG - chr1.2:58625304-58625323 None:intergenic 25.0%
! TTAAGTAATGCCAAGAATTT+GGG + chr1.2:58626726-58626745 MS.gene22941:intron 25.0%
! TTGTGTAAAGGGAAATAAAT+GGG - chr1.2:58627247-58627266 None:intergenic 25.0%
! TTTGTGTAAAGGGAAATAAA+TGG - chr1.2:58627248-58627267 None:intergenic 25.0%
!! AAAAAACATTTGGTTTAGAG+AGG + chr1.2:58625770-58625789 MS.gene22941:intron 25.0%
!! ATTTCTTTAACTTCCTCTAT+TGG + chr1.2:58628064-58628083 MS.gene22941:CDS 25.0%
!! CAAAACCAATAAGCTTATTT+TGG + chr1.2:58627755-58627774 MS.gene22941:intron 25.0%
!! CTTTTACTTAGTTCAACTTT+GGG + chr1.2:58626175-58626194 MS.gene22941:CDS 25.0%
!! TTGTTTCTTCCATTGAATTA+TGG - chr1.2:58625305-58625324 None:intergenic 25.0%
!! TTTCTTTAACTTCCTCTATT+GGG + chr1.2:58628065-58628084 MS.gene22941:CDS 25.0%
!! TTTTGTCTGGTACAAAATTA+CGG + chr1.2:58625834-58625853 MS.gene22941:intron 25.0%
!!! AACATTTTGTGATAATGTGT+TGG + chr1.2:58626605-58626624 MS.gene22941:intron 25.0%
!!! AATAAGCTTATTGGTTTTGA+AGG - chr1.2:58627754-58627773 None:intergenic 25.0%
!!! ATAAGCTTATTGGTTTTGAA+GGG - chr1.2:58627753-58627772 None:intergenic 25.0%
!!! TAACCATTATTGTTTTATGC+AGG + chr1.2:58626431-58626450 MS.gene22941:intron 25.0%
!!! TTATTTATTTTGAGAGGGTA+GGG + chr1.2:58627120-58627139 MS.gene22941:intron 25.0%
!!! TTTATTTATTTTGAGAGGGT+AGG + chr1.2:58627119-58627138 MS.gene22941:intron 25.0%
AAACATTCTCAGTACAACAA+GGG + chr1.2:58627476-58627495 MS.gene22941:intron 30.0%
AAAGAATCTTAACAATGTGC+TGG - chr1.2:58626688-58626707 None:intergenic 30.0%
AACTCAAACCCATAATTCAA+TGG + chr1.2:58625293-58625312 MS.gene22941:CDS 30.0%
AAGAAAATTAGTGGGATAAC+AGG - chr1.2:58627553-58627572 None:intergenic 30.0%
AATGCAATGAACCTTAAACT+TGG + chr1.2:58627499-58627518 MS.gene22941:intron 30.0%
AATTGCTAAGGTGAAATTGA+AGG + chr1.2:58627150-58627169 MS.gene22941:intron 30.0%
AATTTACATCCTAAAGCATG+TGG + chr1.2:58625983-58626002 MS.gene22941:CDS 30.0%
ACAATTGTACTTGCCAATAT+AGG - chr1.2:58627430-58627449 None:intergenic 30.0%
ACCTGAATAATCCTCAAAAT+AGG - chr1.2:58626352-58626371 None:intergenic 30.0%
AGAAGAAGAATAACCTCATT+TGG - chr1.2:58626563-58626582 None:intergenic 30.0%
ATAACAGTAGCTTCTTCAAT+TGG + chr1.2:58626268-58626287 MS.gene22941:CDS 30.0%
ATAATGTGTTGGACTAACTT+AGG + chr1.2:58626616-58626635 MS.gene22941:intron 30.0%
ATCATTGTGTTTGTATGCTT+TGG + chr1.2:58626051-58626070 MS.gene22941:CDS 30.0%
ATGGAGAATACAAAGGAATT+AGG + chr1.2:58628132-58628151 MS.gene22941:CDS 30.0%
CAAACTGTTACAAAAGAGAA+GGG - chr1.2:58625235-58625254 None:intergenic 30.0%
CAAATACCACAAAGAAAAAG+AGG - chr1.2:58626918-58626937 None:intergenic 30.0%
CAACACTTTGACAAATTTCA+TGG + chr1.2:58625555-58625574 MS.gene22941:CDS 30.0%
CATGAAATTTGTCAAAGTGT+TGG - chr1.2:58625557-58625576 None:intergenic 30.0%
GATGACAAAGATATTGTTTG+TGG + chr1.2:58627197-58627216 MS.gene22941:intron 30.0%
GCATGCATTTATTTGTGTAA+AGG - chr1.2:58627259-58627278 None:intergenic 30.0%
GTTAACTAAAAAGCAAAGAG+AGG - chr1.2:58626819-58626838 None:intergenic 30.0%
TCAAACTGTTACAAAAGAGA+AGG - chr1.2:58625236-58625255 None:intergenic 30.0%
TCATTGTGTTTGTATGCTTT+GGG + chr1.2:58626052-58626071 MS.gene22941:CDS 30.0%
TGAAGTAGAAAGTGATTTCA+TGG - chr1.2:58627869-58627888 None:intergenic 30.0%
TGCTAACCAATTTGATGAAA+AGG + chr1.2:58626111-58626130 MS.gene22941:CDS 30.0%
TTATGAGTTTGACAGAATCA+CGG + chr1.2:58625803-58625822 MS.gene22941:intron 30.0%
! ACTCAAATGTTATGGTTTGT+TGG + chr1.2:58627285-58627304 MS.gene22941:intron 30.0%
! CTCTTTTTCTTTGTGGTATT+TGG + chr1.2:58626916-58626935 MS.gene22941:intron 30.0%
! GCTTTTACTTAGTTCAACTT+TGG + chr1.2:58626174-58626193 MS.gene22941:CDS 30.0%
! TTCAATGATGGAGAATACAA+AGG + chr1.2:58628125-58628144 MS.gene22941:CDS 30.0%
! TTGGATCCTTTTCATCAAAT+TGG - chr1.2:58626120-58626139 None:intergenic 30.0%
! TTTTATGCAGGTTATTGTTG+TGG + chr1.2:58626443-58626462 MS.gene22941:intron 30.0%
! TTTTTCCCTCTTTTTCTTTG+TGG + chr1.2:58626909-58626928 MS.gene22941:intron 30.0%
!! TCCTATTTTGAGGATTATTC+AGG + chr1.2:58626348-58626367 MS.gene22941:CDS 30.0%
!!! CACTTGCAACTTTTTTCAAT+TGG + chr1.2:58626152-58626171 MS.gene22941:CDS 30.0%
!!! TATTTATTTTGAGAGGGTAG+GGG + chr1.2:58627121-58627140 MS.gene22941:intron 30.0%
AATTAGTGGGATAACAGGAA+TGG - chr1.2:58627548-58627567 None:intergenic 35.0%
ACCAGCTATTGTCATTGAAA+TGG - chr1.2:58627692-58627711 None:intergenic 35.0%
AGACTTACAGAGAATGATCA+TGG + chr1.2:58626784-58626803 MS.gene22941:intron 35.0%
AGAGGTTCATTAACAGCATT+TGG + chr1.2:58626088-58626107 MS.gene22941:CDS 35.0%
ATCTGTTTCATCAGAAGAAG+AGG - chr1.2:58628253-58628272 None:intergenic 35.0%
ATGTAATTGGAACATGGCAT+TGG - chr1.2:58625734-58625753 None:intergenic 35.0%
CAAACATTCTCAGTACAACA+AGG + chr1.2:58627475-58627494 MS.gene22941:intron 35.0%
CGATTAGGTCATACTTTCTA+TGG - chr1.2:58627010-58627029 None:intergenic 35.0%
CTGATTTCACAACGAAATCA+GGG + chr1.2:58627042-58627061 MS.gene22941:intron 35.0%
CTGATTTCGTTGTGAAATCA+GGG - chr1.2:58627043-58627062 None:intergenic 35.0%
CTGTGAAAGAACCAAGTTTA+AGG - chr1.2:58627513-58627532 None:intergenic 35.0%
CTTGATTTACCACATGCTTT+AGG - chr1.2:58625995-58626014 None:intergenic 35.0%
GAAAGTGATTTCATGGTTGA+AGG - chr1.2:58627862-58627881 None:intergenic 35.0%
GAAGTTAAAAGAAGAGACCA+AGG + chr1.2:58627718-58627737 MS.gene22941:intron 35.0%
GTACTTACCAAAGATGAACA+TGG - chr1.2:58625347-58625366 None:intergenic 35.0%
TACACAAAAAGCTTGGCATT+GGG + chr1.2:58626234-58626253 MS.gene22941:CDS 35.0%
TCTGTTTCATCAGAAGAAGA+GGG - chr1.2:58628252-58628271 None:intergenic 35.0%
TCTTCTGATGAAACAGATGA+TGG + chr1.2:58628255-58628274 MS.gene22941:CDS 35.0%
TGATTCAAAACACACGCTAA+GGG + chr1.2:58627093-58627112 MS.gene22941:intron 35.0%
TGTAATTGGAACATGGCATT+GGG - chr1.2:58625733-58625752 None:intergenic 35.0%
TGTATGTATTGTGTAGGCTT+TGG + chr1.2:58625931-58625950 MS.gene22941:intron 35.0%
! AGTAAACAAGGTTGGTTACA+AGG + chr1.2:58627976-58627995 MS.gene22941:intron 35.0%
! ATGTGGTAAATCAAGTTGTG+TGG + chr1.2:58626000-58626019 MS.gene22941:CDS 35.0%
! TAGAAAGTATGACCTAATCG+CGG + chr1.2:58627010-58627029 MS.gene22941:intron 35.0%
! TGTAACCAACCTTGTTTACT+TGG - chr1.2:58627976-58627995 None:intergenic 35.0%
! TGTTTTGTACTTGTACCAAG+AGG - chr1.2:58628091-58628110 None:intergenic 35.0%
! TTGTCAGCATTGGATAACAT+GGG + chr1.2:58625460-58625479 MS.gene22941:CDS 35.0%
! TTTGTCAGCATTGGATAACA+TGG + chr1.2:58625459-58625478 MS.gene22941:CDS 35.0%
! TTTTACCGTATCAAAACTCC+TGG + chr1.2:58626319-58626338 MS.gene22941:CDS 35.0%
!! ATGGTTTGTTGGATTGAATC+AGG + chr1.2:58627296-58627315 MS.gene22941:intron 35.0%
!! GGAGTTTTGATACGGTAAAA+AGG - chr1.2:58626319-58626338 None:intergenic 35.0%
!! TCAACTTTGGGATCAGTTAT+TGG + chr1.2:58626187-58626206 MS.gene22941:CDS 35.0%
!! TGGTGTTACTGGTATTGTTT+GGG + chr1.2:58626207-58626226 MS.gene22941:CDS 35.0%
!! TGTTTGTATGCTTTGGGAAT+GGG + chr1.2:58626058-58626077 MS.gene22941:CDS 35.0%
!! TTGGTGTTACTGGTATTGTT+TGG + chr1.2:58626206-58626225 MS.gene22941:CDS 35.0%
!! TTTCACCAGGAGTTTTGATA+CGG - chr1.2:58626327-58626346 None:intergenic 35.0%
!! TTTTTCAGTGAGTTTGTGTC+AGG - chr1.2:58626877-58626896 None:intergenic 35.0%
!!! GGTTTTGTAACACTTGCTAT+TGG + chr1.2:58626289-58626308 MS.gene22941:CDS 35.0%
AACTAGTGAAGCCAATACTG+AGG + chr1.2:58628224-58628243 MS.gene22941:CDS 40.0%
ACACAAAAAGCTTGGCATTG+GGG + chr1.2:58626235-58626254 MS.gene22941:CDS 40.0%
ACTAGTGAAGCCAATACTGA+GGG + chr1.2:58628225-58628244 MS.gene22941:CDS 40.0%
AGAGCTTCCATGTTCATCTT+TGG + chr1.2:58625337-58625356 MS.gene22941:CDS 40.0%
AGGATCACACCAAGTAAACA+AGG + chr1.2:58627964-58627983 MS.gene22941:intron 40.0%
AGGTGAAACACCTCTCTTAA+TGG + chr1.2:58628152-58628171 MS.gene22941:CDS 40.0%
ATAACAGGAATGGATGATGC+AGG - chr1.2:58627538-58627557 None:intergenic 40.0%
ATCACTCACTTCTACACGTT+CGG + chr1.2:58626755-58626774 MS.gene22941:intron 40.0%
ATTCTGAACCTCAACAACCA+TGG + chr1.2:58627350-58627369 MS.gene22941:intron 40.0%
ATTTCGTTGTGAAATCAGGG+TGG - chr1.2:58627040-58627059 None:intergenic 40.0%
CAAGAAGTAACCAAGTGACA+TGG - chr1.2:58627905-58627924 None:intergenic 40.0%
CAATGGAAGAAACAAAAGGG+TGG + chr1.2:58625310-58625329 MS.gene22941:CDS 40.0%
CCTGATTTCACAACGAAATC+AGG + chr1.2:58627041-58627060 MS.gene22941:intron 40.0%
CCTGATTTCGTTGTGAAATC+AGG - chr1.2:58627044-58627063 None:intergenic 40.0%
CTCAAAATAGGACTTTCACC+AGG - chr1.2:58626340-58626359 None:intergenic 40.0%
GAAACACCTCTCTTAATGGT+TGG + chr1.2:58628156-58628175 MS.gene22941:CDS 40.0%
GCCATTTCAATGACAATAGC+TGG + chr1.2:58627688-58627707 MS.gene22941:CDS 40.0%
GTACACAAAAAGCTTGGCAT+TGG + chr1.2:58626233-58626252 MS.gene22941:CDS 40.0%
GTGATTCAAAACACACGCTA+AGG + chr1.2:58627092-58627111 MS.gene22941:intron 40.0%
GTGTAGAAGTGAGTGATAGT+AGG - chr1.2:58626752-58626771 None:intergenic 40.0%
GTTACACAGCTTCAAAGAGT+TGG + chr1.2:58627646-58627665 MS.gene22941:CDS 40.0%
TCACACCAAGTAAACAAGGT+TGG + chr1.2:58627968-58627987 MS.gene22941:intron 40.0%
TGATAGTAGGCCCAAATTCT+TGG - chr1.2:58626739-58626758 None:intergenic 40.0%
TGATCCAAAAACCAGACATG+TGG - chr1.2:58625644-58625663 None:intergenic 40.0%
TGTTCATTAGATTCTGGCAG+TGG - chr1.2:58626489-58626508 None:intergenic 40.0%
TTGCACACACTAACCAAATG+AGG + chr1.2:58626547-58626566 MS.gene22941:CDS 40.0%
! AAATCAAGTTGTGTGGAAGG+AGG + chr1.2:58626007-58626026 MS.gene22941:CDS 40.0%
! ACGTTTTTGTCCATGTCACT+TGG + chr1.2:58627892-58627911 MS.gene22941:CDS 40.0%
! CTGGTGAAAGTCCTATTTTG+AGG + chr1.2:58626338-58626357 MS.gene22941:CDS 40.0%
! GAGGTAAGTATCTGAGATGA+AGG - chr1.2:58625611-58625630 None:intergenic 40.0%
! GCAAGTGCTTTTGCTTCATT+TGG - chr1.2:58626139-58626158 None:intergenic 40.0%
! GGGTTAGTACACAAAAAGCT+TGG + chr1.2:58626227-58626246 MS.gene22941:CDS 40.0%
! GGTAAATCAAGTTGTGTGGA+AGG + chr1.2:58626004-58626023 MS.gene22941:CDS 40.0%
! TGGCATTGGGATTTGGAATT+TGG - chr1.2:58625720-58625739 None:intergenic 40.0%
! TTGAAGGGTCTTTTCTTCCT+TGG - chr1.2:58627738-58627757 None:intergenic 40.0%
!! CAGTATTGGCTTCACTAGTT+TGG - chr1.2:58628224-58628243 None:intergenic 40.0%
!! CATGGGTTTTGTGACAAACA+TGG + chr1.2:58625477-58625496 MS.gene22941:CDS 40.0%
!! GGATCAGTTATTGGTGTTAC+TGG + chr1.2:58626196-58626215 MS.gene22941:CDS 40.0%
!! GTGTTTGTATGCTTTGGGAA+TGG + chr1.2:58626057-58626076 MS.gene22941:CDS 40.0%
!! TGATGCAGTTTTGTCAGCAT+TGG + chr1.2:58625450-58625469 MS.gene22941:intron 40.0%
!!! TTCACCACATGTCTGGTTTT+TGG + chr1.2:58625637-58625656 MS.gene22941:CDS 40.0%
AAAATCACTCACCACCCTTC+AGG + chr1.2:58627622-58627641 MS.gene22941:CDS 45.0%
ACACCTCTCTTAATGGTTGG+TGG + chr1.2:58628159-58628178 MS.gene22941:CDS 45.0%
ACTTTCTTGCTCTCCCTTGT+TGG + chr1.2:58625583-58625602 MS.gene22941:CDS 45.0%
CAAACCTTCCATGGTTGTTG+AGG - chr1.2:58627361-58627380 None:intergenic 45.0%
CAACAGATTCACCACATGTC+TGG + chr1.2:58625630-58625649 MS.gene22941:CDS 45.0%
CTTCCACCAACCATTAAGAG+AGG - chr1.2:58628165-58628184 None:intergenic 45.0%
GAAGCTGTGTAACACCTGAA+GGG - chr1.2:58627639-58627658 None:intergenic 45.0%
GACATGTGGTGAATCTGTTG+AGG - chr1.2:58625630-58625649 None:intergenic 45.0%
GATCACAGTTCAAGCTGCAT+TGG + chr1.2:58625958-58625977 MS.gene22941:CDS 45.0%
GCAGACATGTTCACTCTTGT+TGG + chr1.2:58627808-58627827 MS.gene22941:intron 45.0%
TCACTCACTTCTACACGTTC+GGG + chr1.2:58626756-58626775 MS.gene22941:intron 45.0%
TGAACCTCAACAACCATGGA+AGG + chr1.2:58627354-58627373 MS.gene22941:intron 45.0%
TGAAGCTGTGTAACACCTGA+AGG - chr1.2:58627640-58627659 None:intergenic 45.0%
! TGGAACATGGCATTGGGATT+TGG - chr1.2:58625727-58625746 None:intergenic 45.0%
!! CACGGTGAATCACTTTTGTC+TGG + chr1.2:58625821-58625840 MS.gene22941:intron 45.0%
!! CAGCTTCAAAGAGTTGGTGT+TGG + chr1.2:58627652-58627671 MS.gene22941:CDS 45.0%
!! TGAGATGAAGGCACCAACAA+GGG - chr1.2:58625599-58625618 None:intergenic 45.0%
!! TTGTATGCTTTGGGAATGGG+TGG + chr1.2:58626061-58626080 MS.gene22941:CDS 45.0%
!!! TTATTTTGAGAGGGTAGGGG+AGG + chr1.2:58627124-58627143 MS.gene22941:intron 45.0%
ACTTCCTCTATTGGGCCTCT+TGG + chr1.2:58628073-58628092 MS.gene22941:CDS 50.0%
AGAAGAGGGTCCCTCAGTAT+TGG - chr1.2:58628238-58628257 None:intergenic 50.0%
CACTCACTTCTACACGTTCG+GGG + chr1.2:58626757-58626776 MS.gene22941:intron 50.0%
GTCACTGTGCAAACCTTCCA+TGG - chr1.2:58627370-58627389 None:intergenic 50.0%
TAGGGGAGGTGGAATTGCTA+AGG + chr1.2:58627138-58627157 MS.gene22941:intron 50.0%
TGTACCAAGAGGCCCAATAG+AGG - chr1.2:58628080-58628099 None:intergenic 50.0%
TTGGGAATGGGTGGAGTAAG+AGG + chr1.2:58626070-58626089 MS.gene22941:CDS 50.0%
!! CTGAGATGAAGGCACCAACA+AGG - chr1.2:58625600-58625619 None:intergenic 50.0%
GCTGTGTAACACCTGAAGGG+TGG - chr1.2:58627636-58627655 None:intergenic 55.0%
!! TTTTGAGAGGGTAGGGGAGG+TGG + chr1.2:58627127-58627146 MS.gene22941:intron 55.0%
CAGGGTGGCTCACCGCGATT+AGG - chr1.2:58627025-58627044 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 58625185 58628302 58625185 ID=MS.gene22941
chr1.2 mRNA 58625185 58628302 58625185 ID=MS.gene22941.t1;Parent=MS.gene22941
chr1.2 exon 58625185 58625187 58625185 ID=MS.gene22941.t1.exon1;Parent=MS.gene22941.t1
chr1.2 CDS 58625185 58625187 58625185 ID=cds.MS.gene22941.t1;Parent=MS.gene22941.t1
chr1.2 exon 58625271 58625358 58625271 ID=MS.gene22941.t1.exon2;Parent=MS.gene22941.t1
chr1.2 CDS 58625271 58625358 58625271 ID=cds.MS.gene22941.t1;Parent=MS.gene22941.t1
chr1.2 exon 58625458 58625675 58625458 ID=MS.gene22941.t1.exon3;Parent=MS.gene22941.t1
chr1.2 CDS 58625458 58625675 58625458 ID=cds.MS.gene22941.t1;Parent=MS.gene22941.t1
chr1.2 exon 58625947 58626369 58625947 ID=MS.gene22941.t1.exon4;Parent=MS.gene22941.t1
chr1.2 CDS 58625947 58626369 58625947 ID=cds.MS.gene22941.t1;Parent=MS.gene22941.t1
chr1.2 exon 58626453 58626568 58626453 ID=MS.gene22941.t1.exon5;Parent=MS.gene22941.t1
chr1.2 CDS 58626453 58626568 58626453 ID=cds.MS.gene22941.t1;Parent=MS.gene22941.t1
chr1.2 exon 58627621 58627709 58627621 ID=MS.gene22941.t1.exon6;Parent=MS.gene22941.t1
chr1.2 CDS 58627621 58627709 58627621 ID=cds.MS.gene22941.t1;Parent=MS.gene22941.t1
chr1.2 exon 58627812 58627913 58627812 ID=MS.gene22941.t1.exon7;Parent=MS.gene22941.t1
chr1.2 CDS 58627812 58627913 58627812 ID=cds.MS.gene22941.t1;Parent=MS.gene22941.t1
chr1.2 exon 58628046 58628302 58628046 ID=MS.gene22941.t1.exon8;Parent=MS.gene22941.t1
chr1.2 CDS 58628046 58628302 58628046 ID=cds.MS.gene22941.t1;Parent=MS.gene22941.t1
Gene Sequence

>MS.gene22941

ATGGTAAGCTAGCTAAACAATTCAATGCATTATTCACAATTTTTTTTCCCTTCTCTTTTGTAACAGTTTGAAATATGTTACTATAGGGAGACAAAGAAGTAAAAGAAGAACTCAAACCCATAATTCAATGGAAGAAACAAAAGGGTGGATTTAGAGCTTCCATGTTCATCTTTGGTAAGTACAAGTTTTTCACCAAATTAACACTCTTTGTTTTTATGAGCTTATGTAACAAAACATATTGATTTGGTAACATTTTGTTCATTGTTGATGCAGTTTTGTCAGCATTGGATAACATGGGTTTTGTGACAAACATGGTGAGCTTAGTACTATACTTTATTGGAGTGATGCACTTTGATCTTTCAAGCTCTGCCAACACTTTGACAAATTTCATGGGCTCAACTTTCTTGCTCTCCCTTGTTGGTGCCTTCATCTCAGATACTTACCTCAACAGATTCACCACATGTCTGGTTTTTGGATCACTCGAAGTTATTGTAAGTATTTACTTACTAATCATTATTATATTTCAAACACTCCAAATTCCAAATCCCAATGCCATGTTCCAATTACATAAAATAAAGAAAGAAAAAAAAACATTTGGTTTAGAGAGGTTAAACTCGCTTATGAGTTTGACAGAATCACGGTGAATCACTTTTGTCTGGTACAAAATTACGGTGACACTGTGATTTTGTCATTTCGTCAAAACATGTACTATTTTTGTTTATGATTTTAATTTTAATTTTAATACTTGTATGTATTGTGTAGGCTTTGGTAATGATCACAGTTCAAGCTGCATTGGATAATTTACATCCTAAAGCATGTGGTAAATCAAGTTGTGTGGAAGGAGGTATAGCAGTGATGTTTTACTCATCATTGTGTTTGTATGCTTTGGGAATGGGTGGAGTAAGAGGTTCATTAACAGCATTTGGTGCTAACCAATTTGATGAAAAGGATCCAAATGAAGCAAAAGCACTTGCAACTTTTTTCAATTGGCTTTTACTTAGTTCAACTTTGGGATCAGTTATTGGTGTTACTGGTATTGTTTGGGTTAGTACACAAAAAGCTTGGCATTGGGGATTTTTCATCATAACAGTAGCTTCTTCAATTGGTTTTGTAACACTTGCTATTGGTAAACCTTTTTACCGTATCAAAACTCCTGGTGAAAGTCCTATTTTGAGGATTATTCAGGTCTGTAATTAATTATTCTCTAATCATTTTAACTAGTTCATTGATTCATTCATGAGTTTATTAACCATTATTGTTTTATGCAGGTTATTGTTGTGGCTTTTAAGAATAGAAAGCTACCACTGCCAGAATCTAATGAACAACTTTATGAAGTGTATAAAGATGCTACTCTAGAGAAGATTGCACACACTAACCAAATGAGGTTATTCTTCTTCTACATATTCATCATGCCTTAATTAACATTTTGTGATAATGTGTTGGACTAACTTAGGCTAATAATGTTGATATGCATGATGACAATTATGAATTACATTGTGTCCAGCACATTGTTAAGATTCTTTTTCTTCAAGTACGACTAATTAAGTAATGCCAAGAATTTGGGCCTACTATCACTCACTTCTACACGTTCGGGGTAGCAGACTTACAGAGAATGATCATGGAAAATATGTCCTCTCTTTGCTTTTTAGTTAACACCAAAACATAAGAAAAAGTGATAATAATAAATTTCCTGACACAAACTCACTGAAAAAGTTTTTCACACTTTTTTCCCTCTTTTTCTTTGTGGTATTTGGCTTAGTACACCTTTACTTTGTAGATAACATAGAAAGTGAAAATCAAGTACCAATTATTTATTTTGGAACCATAGAAAGTATGACCTAATCGCGGTGAGCCACCCTGATTTCACAACGAAATCAGGGTGCTGCTACGATTTTGTCAAACTCGTTGTGATTCAAAACACACGCTAAGGGTTATTTATTTATTTTGAGAGGGTAGGGGAGGTGGAATTGCTAAGGTGAAATTGAAGGACAAACTTCACATGCACAATAATTGATGACAAAGATATTGTTTGTGGTTGTGAAAACTGAAAACATTTATTCCCATTTATTTCCCTTTACACAAATAAATGCATGCATTTATACTCAAATGTTATGGTTTGTTGGATTGAATCAGGTTTCTAGATAAAGCAGCAATTCTTCAAGAAAATTCTGAACCTCAACAACCATGGAAGGTTTGCACAGTGACACAAGTTGAAGAAGTAAAAATCCTAACAAGAATGTTACCTATATTGGCAAGTACAATTGTAATGAACACATGTTTAGCACAACTTCAAACATTCTCAGTACAACAAGGGAATGCAATGAACCTTAAACTTGGTTCTTTCACAGTACCTGCATCATCCATTCCTGTTATCCCACTAATTTTCTTATGCACATTGATTCCAATTTATGAACTTTTCTTTGTACCATTTATTAGAAAAATCACTCACCACCCTTCAGGTGTTACACAGCTTCAAAGAGTTGGTGTTGGACTAGTACTCTCAGCCATTTCAATGACAATAGCTGGTTTTATAGAAGTTAAAAGAAGAGACCAAGGAAGAAAAGACCCTTCAAAACCAATAAGCTTATTTTGGTTATCTTTTCAATATGCTATATTTGGTATTGCAGACATGTTCACTCTTGTTGGACTATTAGAATTCTTCTACAGAGAAGCACCTTCAACCATGAAATCACTTTCTACTTCATTCACGTTTTTGTCCATGTCACTTGGTTACTTCTTGAGTACTGTTTTTGTTAATGTTATTAATACTGTTACTAAAAGGATCACACCAAGTAAACAAGGTTGGTTACAAGGTTTTGATTTAAATCAAAACAATTTGAACTTGTTTTATTGGTTCTTAGCTATCTTAAGCTGTCTTAATTTCTTTAACTTCCTCTATTGGGCCTCTTGGTACAAGTACAAAACAGAAGATAGTAACAATTCAATGATGGAGAATACAAAGGAATTAGGTGAAACACCTCTCTTAATGGTTGGTGGAAGAAAACATGATGATAAAGCTAAGGCAAAAGAAAGTAGCCAAACTAGTGAAGCCAATACTGAGGGACCCTCTTCTTCTGATGAAACAGATGATGGCAAAGAGAAAGAAAGACATAGATGA

Protein sequence

>MS.gene22941.t1

MGDKEVKEELKPIIQWKKQKGGFRASMFIFVLSALDNMGFVTNMVSLVLYFIGVMHFDLSSSANTLTNFMGSTFLLSLVGAFISDTYLNRFTTCLVFGSLEVIALVMITVQAALDNLHPKACGKSSCVEGGIAVMFYSSLCLYALGMGGVRGSLTAFGANQFDEKDPNEAKALATFFNWLLLSSTLGSVIGVTGIVWVSTQKAWHWGFFIITVASSIGFVTLAIGKPFYRIKTPGESPILRIIQVIVVAFKNRKLPLPESNEQLYEVYKDATLEKIAHTNQMRKITHHPSGVTQLQRVGVGLVLSAISMTIADMFTLVGLLEFFYREAPSTMKSLSTSFTFLSMSLAILSCLNFFNFLYWASWYKYKTEDSNNSMMENTKELGETPLLMVGGRKHDDKAKAKESSQTSEANTEGPSSSDETDDGKEKERHR