AlfalfaGEDB | MS.gene23173

M. sativa cultivar XinJiangDaYe / MS.gene23173

KEGG: K01148
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: PF04857.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23173.t1	XP_024627337.1	96	623	25	0	2	624	3	625	0.00E+00	1195.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23173.t1	Q8W4C3	51.5	610	280	10	21	624	19	618	7.3e-171	602.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23173.t1	A0A396GX24	96.0	623	25	0	2	624	3	625	0.0e+00	1195.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052926	MS.gene23173	0.804543	2.05E-49	-1.69E-46
MS.gene053054	MS.gene23173	-0.803063	4.17E-49	-1.69E-46
MS.gene056296	MS.gene23173	0.811364	7.26E-51	-1.69E-46
MS.gene05954	MS.gene23173	0.805809	1.12E-49	-1.69E-46
MS.gene060572	MS.gene23173	0.806017	1.01E-49	-1.69E-46
MS.gene06114	MS.gene23173	0.803384	3.58E-49	-1.69E-46
MS.gene061266	MS.gene23173	0.813432	2.57E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23173.t1	MTR_7g051320	95.652	69	3	0	556	624	56	124	9.44e-41	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23173.t1	AT3G25430	51.475	610	280	10	21	624	19	618	0.0	625
MS.gene23173.t1	AT3G25430	50.490	612	266	14	21	624	19	601	0.0	595
MS.gene23173.t1	AT1G55870	28.339	614	378	17	28	591	38	639	4.12e-67	232
MS.gene23173.t1	AT1G55870	23.820	445	284	14	191	591	22	455	2.01e-23	104
MS.gene23173.t1	AT1G55870	24.233	326	210	10	300	591	7	329	2.46e-17	84.7
MS.gene23173.t1	AT1G55870	24.233	326	210	10	300	591	7	329	2.46e-17	84.7

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Find 128 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTATCAGCAACAGT+AGG	0.616660	7.2:-51096227	None:intergenic
AAAAGATGTCATGGGATTCA+CGG	0.510431	7.2:-51098177	None:intergenic
AAAATCGGAATTTGAGATGT+GGG	0.504585	7.2:-51092639	None:intergenic
AAACACCATTAAGGCAATTG+TGG	0.519144	7.2:-51097180	None:intergenic
AAAGGCTGAACACGGTGCCA+CGG	0.617100	7.2:-51092704	None:intergenic
AACACCATTAAGGCAATTGT+GGG	0.530873	7.2:-51097179	None:intergenic
AAGAAGCTGAAACCGCTGAG+CGG	0.698109	7.2:-51092765	None:intergenic
AAGAGAAGATAAGGAAGTGT+TGG	0.449439	7.2:+51096981	MS.gene23173:CDS
AAGCATTGAAATCAAAACCC+TGG	0.650030	7.2:-51095016	None:intergenic
AAGCTAGTCAGTCCGCTCAG+CGG	0.720589	7.2:+51092753	MS.gene23173:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTAAAGTTTACCTGAGT+TGG	+	chr7.2:51093789-51093808	MS.gene23173:intron	30.0%
AACCAGAGTACAAAAGAAAT+AGG	-	chr7.2:51096856-51096875	None:intergenic	30.0%
AACTAAAGTTTACCTGAGTT+GGG	+	chr7.2:51093790-51093809	MS.gene23173:intron	30.0%
AAGTCATCTTGCAAAAATTG+TGG	+	chr7.2:51097577-51097596	MS.gene23173:intron	30.0%
ACAAATTCATCTACTTCTGA+TGG	-	chr7.2:51097336-51097355	None:intergenic	30.0%
ACATGATGATTCTTGGATAT+TGG	-	chr7.2:51098044-51098063	None:intergenic	30.0%
ACCAGAGTACAAAAGAAATA+GGG	-	chr7.2:51096855-51096874	None:intergenic	30.0%
ACCTGTTACACAAATTGAAA+TGG	-	chr7.2:51096114-51096133	None:intergenic	30.0%
ACGAACTTATCAACTCTATT+AGG	+	chr7.2:51096407-51096426	MS.gene23173:CDS	30.0%
ACTAGCACAAATATAAGCAT+AGG	-	chr7.2:51095615-51095634	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	51092506	51098522	51092506	ID=MS.gene23173
chr7.2	mRNA	51092506	51098522	51092506	ID=MS.gene23173.t1;Parent=MS.gene23173
chr7.2	exon	51092506	51092843	51092506	ID=MS.gene23173.t1.exon1;Parent=MS.gene23173.t1
chr7.2	CDS	51092506	51092843	51092506	ID=cds.MS.gene23173.t1;Parent=MS.gene23173.t1
chr7.2	exon	51094920	51095050	51094920	ID=MS.gene23173.t1.exon2;Parent=MS.gene23173.t1
chr7.2	CDS	51094920	51095050	51094920	ID=cds.MS.gene23173.t1;Parent=MS.gene23173.t1
chr7.2	exon	51096132	51096326	51096132	ID=MS.gene23173.t1.exon3;Parent=MS.gene23173.t1
chr7.2	CDS	51096132	51096326	51096132	ID=cds.MS.gene23173.t1;Parent=MS.gene23173.t1
chr7.2	exon	51096407	51096519	51096407	ID=MS.gene23173.t1.exon4;Parent=MS.gene23173.t1
chr7.2	CDS	51096407	51096519	51096407	ID=cds.MS.gene23173.t1;Parent=MS.gene23173.t1
chr7.2	exon	51096889	51097005	51096889	ID=MS.gene23173.t1.exon5;Parent=MS.gene23173.t1
chr7.2	CDS	51096889	51097005	51096889	ID=cds.MS.gene23173.t1;Parent=MS.gene23173.t1
chr7.2	exon	51097082	51097196	51097082	ID=MS.gene23173.t1.exon6;Parent=MS.gene23173.t1
chr7.2	CDS	51097082	51097196	51097082	ID=cds.MS.gene23173.t1;Parent=MS.gene23173.t1
chr7.2	exon	51097295	51097510	51097295	ID=MS.gene23173.t1.exon7;Parent=MS.gene23173.t1
chr7.2	CDS	51097295	51097510	51097295	ID=cds.MS.gene23173.t1;Parent=MS.gene23173.t1
chr7.2	exon	51097873	51098522	51097873	ID=MS.gene23173.t1.exon8;Parent=MS.gene23173.t1
chr7.2	CDS	51097873	51098522	51097873	ID=cds.MS.gene23173.t1;Parent=MS.gene23173.t1

Gene Sequence

>MS.gene23173

ATGGCTTCTTCACTCTTCAATTTCCTACTACATCACCAAAAACGTCCCCTCTGCACCAAAATCTCCTCTTCGAAATGGAAAGTAAAACAAGTCACAATCTCCAACTTCAACGAATCACTACAAGAAATCAAAACCCACATCTCAAATTCCGATTTTATCGCCATTTCAATGGAGAAAACAGGTTCTTCTTCAACAACTCCGTGGCACCGTGTTCAGCCTTTCGATACGGCGGAAACCGCTTATCTGAAAGCTAGTCAGTCCGCTCAGCGGTTTCAGCTTCTTCAGTTCGCTGTCTGCCCGTTTTCTGTTACGGATTCTAACAACCTCGTTGCTCATCCGTGAGTTCTTCTAACTACAACACTCAGAACCGTTTTTTTATTTTAAGTTGATTATTAGAATATTTATTATTGGAAAGTGTGAATCATAGTATTAATTACGAAATGCTAGTTTTTGTTGATTATCTAAAGTTTAGAGGAGTTGGGTCTCCCGGCGTTGAATGACTCAACTTGTTCGAGCTAAGGGATAAGTAGTTGGAGGTCCTGGGCCGATCGAACAACGATAAAAAATCTAATCTAACAACTAATTACTAACATTTGTATCCCCGTGAACTTAACTCAGTTGTTAGGGATATTGCATATTTTATGCAGGGTCTGGGGTTCGAACCCAGGACACCCTACTTCTCCACATTTAAAATGTGTGAGCTTTAGCCACTACGCTATTTGATAAAAAAAAATTACTAACATTTGTCAATCAACAAAAAAAAAAAAAGATGAGTTGGGTCTCGGGGCTCACCAACTAAAGCTGACAGCAGGAGTTAAACTCATTTCTTGTGTTAAACTCATTTCTTGTGGGATATGAACCAACTCGTTATCAACTGGATTAACCTCATTTGAATGGAAATGGTAGTTTTCTTTTGTTGTTGTACTTTTTCGAATAAAATTGTAAAAATGTGGAGTACATGCATTGCTTATAGAGTGTAATGGAAATAAATTAGTTTTACACTGACATTTAATTGGAGTCTTTATATTGTGAAATTATATTATCAATTGTATAAAGTAGTTACATGAGTGCGATGCTGCTATGAAGCAGAGACACATGCATCGTACATGCATTGATACCATTTGAATAAACCTTAAAGAATGTTTCAGCGCAGGCATTATTCTTGGACTTTAATGGCCGTAAACTTAACTTAAGTACATTAGTTTTACACTAACATCTTAAATGAGAAGTATTTTTGTCGTATAATATCATCAATTTTATAGGAAATGCTAGTTTTTGTTGATAAACTAAAGTTTACCTGAGTTGGGTCTCGGACGCTCACTAGTGTCACAGCAGGTTTCAGAGCTCAGACAGGGGTACTTACTTACATATTACCCACTAACCAAGTCTTAATGTTGGCAGAGGGAGTTGAACTCATGCTCTTGTGGGGTATGAACCAACTGCTAACCTCTTGTGACAGGAAATGATAGTTTTCTTTTGTTGTTATACCTTTTTGAATAAACTTGAAAAAATGTGTGCATGCACAGTTCTTTCTTAGAGCTTAATAGACATATAATGATAGTTAATTAGTTTTACACTGACATCCAATAGGAGTTTTTATTTTGTATTATTATGTCATCAATTGTATGAACTATGATGCAGTTACAAACGTGGGATGCTATGTTGTGTCACATGTCACATACACACACAATACTGACATTGATACGTTGAAACCAATAATAATGGGCGACAATAAACATTTTTTGTTGTAATACCATTTTGAGTAAACCTTACAGAATGTTTCAGCGCAGACATTATTCTTGGACTTTAATGGCCGTACACTTGAGTACATTAGTCTTACACTAACATCTTAAATGAGCAGTTCCTTTTTTTGTCATAGAATATCATCAGTTTTATAATGTTAGTTAGAAGAGTGGGATACTATGTAGTGACAGAGACACAACATTGACACTAACATGTCGACACCAGTACTAATTTAAAAAATAGAAGTAACTGAATATAACCATGAGTGTGTGACTGTGTTAGTACGTGTCGATACCAGACAAACCTTCAATATGAATTTTCGGTCATGCATAGGTGGGATGACATGAGAAAACAATGAATTTTCATTGGATGTCAGTGTAAAAACCGGGTTACAATGACGGTTCATATCTTTTAAATCCTTATTCTTGAGAATGTAAAAAGTTTTAAAGTTCACCTAATTTCTAATAATCACAAATGTTGATGATATTGATCCATAGCTAGCAGATACATTGGTTGTGATAAAAATCAATGACCTGGACTATTTGTTGTTTAAAAGAATCAAAGTGCAGTTTTTGCATTCTTTGAAATGAATTTATTGTTGCCAAATTTTCTAGTAGTTAATTTATGCTTCACTTTTTCTTTGTTTTTTCAAAATTGTGTTTTTTATGCAGGTATAATTTCCTTTTGTTTCCAAGGGATGAGTTAAAGCTTGGTATGCCTGCTTACAGTTTTTTGTGCCAGACGTCTCATTTGACAACCATGGCTCGCCAGGGTTTTGATTTCAATGCTTGTATATATGAAGGTGCGAGGTTTTGTTGTACTTTGTGTTTTTGTTTATGTTTCTAATGGGATTTTTTTAATTTTAAAGTAACTATTACCATGAATTTGTATGTAGGTTTGTTGTTTTCCTTTGTAGGCGTAATTTAGATCGTGTTTTGTTGCTCTACAAATACAATACATTCATTTGCCCAAATTGGAACTGTTGTTCTGTTACCAATAAAAACTGGAACTGTTGAATTTCTGTGAAATTTATTTGGTTATTGTTTTACCTTCTGTTTAGTAATTATTGGGTACTAATAAGAATTTATTTGAACTTATCTTATCACATAAATATCTGTTTAAGTGTTTAGAAGAGCTTTTGATGATACGTCCTTAACCTTAAGCTGTTGTGAGCTTATTTTCATAAGCTTTGTAGGATAGTTTATAGAAACGACCTATAAAGAGCTTATGTAAGTTTTCTCTCATTATATCTTCCATTAGAGAAACAACTTATAAGTAAGCACTTAATAAGTTGTATTAATTAAGCTATTTACTCAAACTCCTCATGAGATTTATTAACAACGTCACATTTATCTTTTACGGTCCTATGCTTATATTTGTGCTAGTTTTCTTTTAAATTTGACGAGCCAGCGAGCAAAAATAGAACTTTCATTTATGTGTTTTCTGACGTTGTTTGTTTCAAATATGGATACTTTGGAGAAAGGAGTTGGGTTTGTGTGGGTACTGTATTGCTGTAATGTTTTGTTGCGCTTGCATGTTAATATCCATGCTACTTTAGTTGCCTATGTGATGTGAGTCAGTAAAAACTAAATTGGAAGGTTTTTCTGTTTCTTCTGGTATGTGTTAAGGCAAGGTGAAAAAGAAAAAGAAGGGTTACCATCATGTATCAGTTTCTTAAGCTTATTTTGCCATAAATTCAAAGTAGTGATTTCTTACTTGCTAGACACCTGAACAGACAATCTCTTCGACTACATACGAAAATGTTTTAGAATTCTATTATATGCAGAAAAATGTATGTTATGCTATGTGAAATGTGAGTTGAGGGTCTATGGTTCTGTTACTTATATCCTAAGACCTCTGATCCATTTCAATTTGTGTAACAGGTATATCGTATTTATCTAGAGCACAAGAGTCAGTTGCTAAAATTCGTTTAGGGACCAGTTCTCCATCTCTTGGTGTGATGAAATCTTCTTCACCTCCTACTGTTGCTGATACAGTTTTTATTGAGAGGATTAAATCACGGATTAAACATTGGAGAAATACATGTAAAAACTCAGGCACAAAGACAAGCAAAGATGGTAAGAAAATATTTGGTAATTTTGTACAATGAGATTTTTCTTAGGTCCTCCTTTTATTCTTTATCACTCATTTTGTGCAGACGAACTTATCAACTCTATTAGGAATATTATCTCGGGTAGTGAACAGTTCAAATCAAGACCATGCTTGAATGTAGATGTTTGCAGTGACCGCCAAGTGCAACTAATTCTGCAGGTATAGCAGACTTAATATAGTTGTAACTTCTTTAATTTGATTGATACAATTTTGGGTCCTGTTTGGATAAGCCACTTAATTAAATGTATATATAAACTAGTTTTATAACAAAATATAAAATAAAGTCAAACTGTTTTCATATAAACTATAATTGTCTTCATAAGCTATCCTGAAGAGCTTTTGAAAATAACAGCTTAGACACGTCATAAGTTATTTTCGTATGCGCTCCCAAACAATATCACAAGTGATTATGCAAGTAGATAAGCTCAAATAAGTTAATCCAAACAAACCCTTGATCTCGTCACAATAGATAGAATTGAATTAACATTTTTCCCTATTTCTTTTGTACTCTGGTTTCTCTGCATGTAGATGGTAGTAAACTTCTCAGATGACTTGCTTCCTTTAGTGATACCTTCAAAGGGTGGAACAACTCAGGCAGTACGTGTCGTTTTGACGAAATCAAGAGAAGATAAGGAAGTGTTGGAGGTAACAAGAGTCTTTCGCTGTTTGTCTCTTCCTCATTAGGTTTTACTTCGGATATAACTCTAGATCTACACTGCAGAGAGAGCTTCGTAGTTTAGAAGAGGAGGAGAGCAAGAAAATTCGTGGATTTCGAGAGGTGATCGATTTGATTTCCGCTTCAGAGAAACCTGTTATCTCCCACAATTGCCTTAATGGTGTTTCTCTTAAATGGAAATCTATCAACTTAGTTCTAGTTTACTGACTTGGTTTACTCTCTTCCATTTATTAACCCTGATTTGATTTATTTATGTAGACTGTACACTTATTCATTCAAAATTCATCGCACCACTGCCATCAGAAGTAGATGAATTTGTGAGCTCCTTGTGCAAATTTTTCCCCAAAGTACTTGACGTGAATTATTTAATGAAGAAAAGTGGAACCATGAAAAAAGTGACCAACATCCGTAATGCTTTATCCTACGTGAATACTCATTTCCTTGCACCAGTTGACATGGAAATTCCTGACCAAGGTCAGTCACTCTACCTCTTGATGTCCAATGCAAAATTCAGAAGTTTGCTTATTGATTGTTTCATCCAAGTCATCTTGCAAAAATTGTGGAAAGCAGCACGACAAATCCTTTATAACTTGCAGAATTTTGATTGCATGCAGTCAGCAATCCCACACATTCATACATTTAGCACATCAGTGGCAGTTGAATCAATATTAGACGGTCACCGATGTATTGACTGTATATGCATGGGATTGTTTGTGACTGGAGACAATCTGAATACGAAGTTTTGTTCTTATTCCTTTAATGATTTCTGTCAGCATGATATAAAGTTAATTTTACTAGCTGCTTAGTCTTCCTTTCTGTTTTTGTTTTGTTTACAGATACAATAAACAAAGGCAAGATTGATGGACTTGATGCTCTAAGGCTATCCTGTTTATTTATGAAGCTCTGCTCTGTATTGAAAATTTCCCCTGTTGTAACTGAATCTGGAAACAGGCAATTGGCCCCGCAGCTTGAAGACTTCACTAATGTATTCCATTCATGGTCAGCCAATATCCAAGAATCATCATGTAACGAGGATGTTAGTGTGTGGACCAATAATACAAGGAAAGCAAATTGCGAACATTTAGTATTCTTATGGGGATTTAAGTTTGGTATGACGGCCGGCATGTTGAAGAGTGTTCTCCGTGAATCCCATGACATCTTTTTAGAAGAGTTTGATGTTAAATTCGTGGACAAGAGTTGTGCCTTTGTCGTTTTCTGGGAACCTGGCTTGTCGAAAGATTTTCTAAATGTAATGAATGGTGAACAAATTAGTGGAGGCTTAAAGGAGTTAGTATCAGATGGCTTGAGGGTAACAGGTTATGAGACCTATAGAACAATGTGTAGGCTAGGTTTGTGGGAGATAGATCTTGCTGAGTCTTTAGAGAAAACCTTGGAGTGTTCTCTCAATGATACAGAGATTCATAGTGAAAAAAAACCAGATATTCAATGGTGTAATGACAATGTAATCAACCTGGATGATCTTTAA

Protein sequence

>MS.gene23173.t1

MASSLFNFLLHHQKRPLCTKISSSKWKVKQVTISNFNESLQEIKTHISNSDFIAISMEKTGSSSTTPWHRVQPFDTAETAYLKASQSAQRFQLLQFAVCPFSVTDSNNLVAHPYNFLLFPRDELKLGMPAYSFLCQTSHLTTMARQGFDFNACIYEGISYLSRAQESVAKIRLGTSSPSLGVMKSSSPPTVADTVFIERIKSRIKHWRNTCKNSGTKTSKDDELINSIRNIISGSEQFKSRPCLNVDVCSDRQVQLILQMVVNFSDDLLPLVIPSKGGTTQAVRVVLTKSREDKEVLERELRSLEEEESKKIRGFREVIDLISASEKPVISHNCLNDCTLIHSKFIAPLPSEVDEFVSSLCKFFPKVLDVNYLMKKSGTMKKVTNIRNALSYVNTHFLAPVDMEIPDQDTINKGKIDGLDALRLSCLFMKLCSVLKISPVVTESGNRQLAPQLEDFTNVFHSWSANIQESSCNEDVSVWTNNTRKANCEHLVFLWGFKFGMTAGMLKSVLRESHDIFLEEFDVKFVDKSCAFVVFWEPGLSKDFLNVMNGEQISGGLKELVSDGLRVTGYETYRTMCRLGLWEIDLAESLEKTLECSLNDTEIHSEKKPDIQWCNDNVINLDDL